AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832250 MtrunA17_Chr5g0393641 98.000 100 1 1 130 229 125 223 4.68e-25 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 146 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAATGGTGGAGGTGAGGC+AGG 0.243796 5_4:+5298817 None:intergenic
GGTGGTGCTGGAGATGAGTT+TGG 0.260123 5_4:+5299090 None:intergenic
ATGATGGTTGGATTAGTATT+TGG 0.266614 5_4:-5298056 Msa0832250:CDS
CGTTTGTGACATTCCATTAT+CGG 0.278164 5_4:-5299488 Msa0832250:five_prime_UTR
GGAGGAGTGAGTGGGGTTGG+AGG 0.298635 5_4:+5298877 None:intergenic
CTCACTGTGATAACCGATAA+TGG 0.317247 5_4:+5299475 None:intergenic
GACTTAAGAGTTTGTTGGTA+TGG 0.320423 5_4:+5299349 None:intergenic
TGGTATGGGAGAGGTTAAAT+AGG 0.322468 5_4:+5299364 None:intergenic
GGGAGGTGGATGGAGCTTGT+TGG 0.323002 5_4:+5299112 None:intergenic
GTGGTGCTGGAGATGAGTTT+GGG 0.326325 5_4:+5299091 None:intergenic
TACATACATAATTACATATA+CGG 0.335636 5_4:-5299400 Msa0832250:five_prime_UTR
ATTCTTGAGACATTCATTTC+AGG 0.339733 5_4:-5297898 Msa0832250:three_prime_UTR
GTTGCTGGAGGTGGAGTTGC+GGG 0.342550 5_4:+5298772 None:intergenic
GGGGAGGCTTGAGGAGTGGT+TGG 0.345280 5_4:+5299045 None:intergenic
AGTGGACTGAGCTGGTGGAG+GGG 0.345641 5_4:+5298963 None:intergenic
GCGGGAGCTGGAGTGGTTGC+TGG 0.347245 5_4:+5298709 None:intergenic
GGAGGTGGATGGAGCTTGTT+GGG 0.351801 5_4:+5299113 None:intergenic
GTTGCGGGAGGTGGAGTAGC+AGG 0.362408 5_4:+5298787 None:intergenic
GGAGGTGGAGTTGCGGGAGG+TGG 0.365057 5_4:+5298778 None:intergenic
GGGCACACATCATATAGTTT+TGG 0.373727 5_4:-5299175 Msa0832250:CDS
TGGAGATGAGTTTGGGGAGG+TGG 0.375955 5_4:+5299098 None:intergenic
GGTGGAGGAGTGAGTGGGGT+TGG 0.384797 5_4:+5298874 None:intergenic
GGAGTGGACTGAGCTGGTGG+AGG 0.388176 5_4:+5298961 None:intergenic
CTCTTAAGCTTGGCAGGAGC+GGG 0.396891 5_4:+5298691 None:intergenic
ATATAACCTGCGCATGCAAC+TGG 0.397299 5_4:+5299262 None:intergenic
GGAGGAGGAGATTGCTGAAC+TGG 0.403376 5_4:+5298895 None:intergenic
GAGATTAAGCTGGAAATGTT+TGG 0.403651 5_4:-5299455 Msa0832250:five_prime_UTR
GGTGGAGGGGAGGACTGAAC+TGG 0.408526 5_4:+5298976 None:intergenic
AATGGTGGAGGTGAGGCAGG+GGG 0.411793 5_4:+5298820 None:intergenic
GGAGTGAGTGGGGTTGGAGG+AGG 0.412037 5_4:+5298880 None:intergenic
AGAGAAGAGAGTCCGGGAGC+GGG 0.413239 5_4:+5298625 None:intergenic
GAGTGGACTGAGCTGGTGGA+GGG 0.415952 5_4:+5298962 None:intergenic
GGTGTATTAGCAGGAGGAGT+GGG 0.419095 5_4:+5299069 None:intergenic
GCTTTACTCTTAAGCTTGGC+AGG 0.421108 5_4:+5298685 None:intergenic
TTGAAGACTTAAGAGTTTGT+TGG 0.421189 5_4:+5299344 None:intergenic
GCAGGAGGAGTGGGTGGTGC+TGG 0.425989 5_4:+5299078 None:intergenic
AGCTTGGCAGGAGCGGGAGC+TGG 0.429818 5_4:+5298697 None:intergenic
GAGGCTTGAGGAGTGGTTGG+AGG 0.431331 5_4:+5299048 None:intergenic
AGCTTGTTGGGCTCCTACGC+TGG 0.431825 5_4:+5299125 None:intergenic
GTGGTTGGAGGTGTATTAGC+AGG 0.434184 5_4:+5299060 None:intergenic
AGAAGATTGAACAGGTGGAG+GGG 0.439354 5_4:+5299026 None:intergenic
GGAGGAGATGAGAGAGGAGT+AGG 0.444838 5_4:+5298730 None:intergenic
GAATGGTGGAGGTGAGGCAG+GGG 0.448327 5_4:+5298819 None:intergenic
ACTGGTGGTGGAGCGGATAC+AGG 0.448600 5_4:+5298913 None:intergenic
TTCTTGAGACATTCATTTCA+GGG 0.448618 5_4:-5297897 Msa0832250:three_prime_UTR
AGGAGAGAATGGTGGAGGTG+AGG 0.448761 5_4:+5298813 None:intergenic
GAGAAGATTGAACAGGTGGA+GGG 0.453077 5_4:+5299025 None:intergenic
ATGGGAGAGGTTAAATAGGC+AGG 0.454141 5_4:+5299368 None:intergenic
ACTTAAGAGTTTGTTGGTAT+GGG 0.454230 5_4:+5299350 None:intergenic
ATAAACATGGTTGTGGTAAA+GGG 0.460444 5_4:+5297652 None:intergenic
GGAGGAGGAGTTGCTGGAGG+TGG 0.464095 5_4:+5298763 None:intergenic
CCATCAGATGCTCCCGCTCC+CGG 0.465627 5_4:-5298637 Msa0832250:CDS
AGTACCAGATGGAGAGATAG+AGG 0.465651 5_4:+5298597 None:intergenic
GGAGAAGATTGAACAGGTGG+AGG 0.466956 5_4:+5299024 None:intergenic
GATGAGTTTGGGGAGGTGGA+TGG 0.470184 5_4:+5299102 None:intergenic
AGAGTACAGGTGCCAATGTA+GGG 0.471479 5_4:+5298662 None:intergenic
AGAATGGTGGAGGTGAGGCA+GGG 0.471635 5_4:+5298818 None:intergenic
AGGTTAAATAGGCAGGATAT+AGG 0.475253 5_4:+5299375 None:intergenic
ATAAATCAAGACAATTAAGA+TGG 0.490920 5_4:-5299196 Msa0832250:exon
GCGGGAGGTGGAGTAGCAGG+GGG 0.491257 5_4:+5298790 None:intergenic
AGTGCCGGAGGAGGAGTTGC+TGG 0.491583 5_4:+5298757 None:intergenic
GAGAGTACAGGTGCCAATGT+AGG 0.499124 5_4:+5298661 None:intergenic
ACCTCCAGCAACTCCTCCTC+CGG 0.499715 5_4:-5298761 Msa0832250:CDS
GGCAGGAGCGGGAGCTGGAG+TGG 0.502540 5_4:+5298702 None:intergenic
GCATCTGATGGCGAGAGTAC+AGG 0.502597 5_4:+5298649 None:intergenic
GGAGAAGACTGAACGGGAGG+GGG 0.504581 5_4:+5298940 None:intergenic
GGGGAGAGAGAAGAGAGTCC+GGG 0.504838 5_4:+5298619 None:intergenic
GGGGAGGACTGAACTGGAGG+TGG 0.505376 5_4:+5298982 None:intergenic
ACGTGGGGAGACTCTACAAC+AGG 0.507489 5_4:-5297711 Msa0832250:three_prime_UTR
GGAGAAGACTGCACGGGTGG+AGG 0.508426 5_4:+5299003 None:intergenic
TGCGGGAGGTGGAGTAGCAG+GGG 0.516905 5_4:+5298789 None:intergenic
GGACTGAGCTGGTGGAGGGG+AGG 0.519909 5_4:+5298966 None:intergenic
TGGAGGGGAGGCTTGAGGAG+TGG 0.522970 5_4:+5299041 None:intergenic
AGAGTTTGTTGGTATGGGAG+AGG 0.525739 5_4:+5299355 None:intergenic
GGATCCACCAGGGGTGAAAG+AGG 0.526733 5_4:-5299533 None:intergenic
TTTACGTAGTTCTGTAACGT+GGG 0.527539 5_4:-5297727 Msa0832250:three_prime_UTR
AACCTGCGCATGCAACTGGC+AGG 0.529095 5_4:+5299266 None:intergenic
GAGAGAAGAGAGTCCGGGAG+CGG 0.529145 5_4:+5298624 None:intergenic
GGAGGGGAGGACTGAACTGG+AGG 0.529701 5_4:+5298979 None:intergenic
TGGTGCTGGAGATGAGTTTG+GGG 0.531907 5_4:+5299092 None:intergenic
GAGAAAATAATAATATATAG+AGG 0.534434 5_4:+5297962 None:intergenic
AGGAGAAGACTGAACGGGAG+GGG 0.536416 5_4:+5298939 None:intergenic
GGTGGAGAAGACTGCACGGG+TGG 0.537106 5_4:+5299000 None:intergenic
AAAAGAAAGCAACGAATGGA+TGG 0.538134 5_4:+5297815 None:intergenic
GGAGGAGAAGATTGAACAGG+TGG 0.538673 5_4:+5299021 None:intergenic
GGAGGAGAAGACTGAACGGG+AGG 0.539000 5_4:+5298937 None:intergenic
CGATCTAGAACAGCAAGGAC+AGG 0.539363 5_4:+5298024 None:intergenic
GGTGGAGGAGAAGACTGAAC+GGG 0.540730 5_4:+5298934 None:intergenic
GGAGTAGGTGTGAGTGCCGG+AGG 0.541820 5_4:+5298745 None:intergenic
ACTCTTAAGCTTGGCAGGAG+CGG 0.544295 5_4:+5298690 None:intergenic
TTGCGGGAGGTGGAGTAGCA+GGG 0.544392 5_4:+5298788 None:intergenic
GGTGGAGGAGAAGATTGAAC+AGG 0.545453 5_4:+5299018 None:intergenic
AGTTGCTGGAGGTGGAGTTG+CGG 0.545853 5_4:+5298771 None:intergenic
GTAGGTGTGAGTGCCGGAGG+AGG 0.550735 5_4:+5298748 None:intergenic
CTGAGTTCTGAAGAGAAGAC+AGG 0.554865 5_4:+5297998 None:intergenic
AGGTGTATTAGCAGGAGGAG+TGG 0.554875 5_4:+5299068 None:intergenic
GGTGGTGGAGTAGACTGAAC+AGG 0.557587 5_4:+5298853 None:intergenic
TGAACAGGTGGAGGAGTGAG+TGG 0.558370 5_4:+5298868 None:intergenic
GAGGAGAAGACTGAACGGGA+GGG 0.560092 5_4:+5298938 None:intergenic
TGCTGGAGATGAGTTTGGGG+AGG 0.562310 5_4:+5299095 None:intergenic
TTATCACAGTGAGATTAAGC+TGG 0.562741 5_4:-5299465 Msa0832250:five_prime_UTR
GTTGCTGGAGGAGATGAGAG+AGG 0.564896 5_4:+5298724 None:intergenic
GTACCAGATGGAGAGATAGA+GGG 0.566886 5_4:+5298598 None:intergenic
TGAGACATTCATTTCAGGGG+AGG 0.568142 5_4:-5297893 Msa0832250:three_prime_UTR
AGAGGAGTAGGTGTGAGTGC+CGG 0.568247 5_4:+5298742 None:intergenic
ACAATGACCTCTTTCACCCC+TGG 0.570301 5_4:+5299526 None:intergenic
TGGTCACATAAGATGATGGT+TGG 0.571238 5_4:-5298068 Msa0832250:CDS
GCTGGAGGTGGAGTTGCGGG+AGG 0.571892 5_4:+5298775 None:intergenic
AGGGGCTTTACTCTTAAGCT+TGG 0.573619 5_4:+5298681 None:intergenic
CCGGGAGCGGGAGCATCTGA+TGG 0.577356 5_4:+5298637 None:intergenic
TACCAGATGGAGAGATAGAG+GGG 0.577669 5_4:+5298599 None:intergenic
GTTGGAGGTGTATTAGCAGG+AGG 0.581176 5_4:+5299063 None:intergenic
TAAATCAAGACAATTAAGAT+GGG 0.584084 5_4:-5299195 Msa0832250:exon
ACAGGTGGAGGGGAGGCTTG+AGG 0.584481 5_4:+5299036 None:intergenic
GGAGATTGCTGAACTGGTGG+TGG 0.584891 5_4:+5298901 None:intergenic
ATGACCTCTTTCACCCCTGG+TGG 0.588469 5_4:+5299529 None:intergenic
ATTCAAAAGAAAGCAACGAA+TGG 0.591030 5_4:+5297811 None:intergenic
AGATTGAACAGGTGGAGGGG+AGG 0.591929 5_4:+5299029 None:intergenic
GAACAGGTGGAGGAGTGAGT+GGG 0.591944 5_4:+5298869 None:intergenic
GAGGCGGTGGGATCCACCAG+GGG 0.592519 5_4:-5299542 None:intergenic
GGTGGAGCGGATACAGGTGG+AGG 0.597066 5_4:+5298919 None:intergenic
GGAGTAGACTGAACAGGTGG+AGG 0.602159 5_4:+5298859 None:intergenic
TAAGAGTAAAGCCCCTACAT+TGG 0.608658 5_4:-5298674 Msa0832250:CDS
GGTGGTGGAGCGGATACAGG+TGG 0.611309 5_4:+5298916 None:intergenic
TCTTGAGACATTCATTTCAG+GGG 0.612581 5_4:-5297896 Msa0832250:three_prime_UTR
CTTACATCATCAGTACCAGA+TGG 0.612844 5_4:+5298586 None:intergenic
GGAGCTGGAGTGGTTGCTGG+AGG 0.617650 5_4:+5298712 None:intergenic
TGAGGCGGTGGGATCCACCA+GGG 0.622667 5_4:-5299543 None:intergenic
GCCGGAGGAGGAGTTGCTGG+AGG 0.626597 5_4:+5298760 None:intergenic
AGGTGGAGGAGAAGACTGAA+CGG 0.627967 5_4:+5298933 None:intergenic
GTATTAGCAGGAGGAGTGGG+TGG 0.629272 5_4:+5299072 None:intergenic
ATTTACGTAGTTCTGTAACG+TGG 0.629666 5_4:-5297728 Msa0832250:three_prime_UTR
GACCTGCCAGTTGCATGCGC+AGG 0.636482 5_4:-5299268 Msa0832250:five_prime_UTR
GTTGTGGTCACATAAGATGA+TGG 0.642053 5_4:-5298072 Msa0832250:CDS
TGGAGGTGGAGAAGACTGCA+CGG 0.644717 5_4:+5298996 None:intergenic
GGAGGTGGAGAAGACTGCAC+GGG 0.646719 5_4:+5298997 None:intergenic
AGAGTGGGGCAGAGAAGTTG+TGG 0.650807 5_4:-5298088 Msa0832250:CDS
GAGTACAGGTGCCAATGTAG+GGG 0.651058 5_4:+5298663 None:intergenic
GGAGGAGATTGCTGAACTGG+TGG 0.653228 5_4:+5298898 None:intergenic
AACAGGTGGAGGAGTGAGTG+GGG 0.663660 5_4:+5298870 None:intergenic
ACCAGATGGAGAGATAGAGG+GGG 0.666744 5_4:+5298600 None:intergenic
TTGCTGAACTGGTGGTGGAG+CGG 0.669656 5_4:+5298906 None:intergenic
ATGTATATATCATGAGCATG+AGG 0.675773 5_4:+5299418 None:intergenic
GGTGGAGTAGACTGAACAGG+TGG 0.681346 5_4:+5298856 None:intergenic
TTACGTAGTTCTGTAACGTG+GGG 0.688815 5_4:-5297726 Msa0832250:three_prime_UTR
GGTGTCGATCTAGAACAGCA+AGG 0.731219 5_4:+5298019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATATTAATATGACA+TGG + chr5_4:5298740-5298759 None:intergenic 10.0%
!!! TTAAACATGTTTTTTTAATT+AGG + chr5_4:5298961-5298980 None:intergenic 10.0%
!! TAAAAAATATTAATATGACA+TGG + chr5_4:5298740-5298759 None:intergenic 10.0%
!!! TTAAACATGTTTTTTTAATT+AGG + chr5_4:5298961-5298980 None:intergenic 10.0%
!! TACATACATAATTACATATA+CGG - chr5_4:5297795-5297814 Msa0832250:three_prime_UTR 15.0%
!! GAGAAAATAATAATATATAG+AGG + chr5_4:5299236-5299255 None:intergenic 15.0%
!! TACATACATAATTACATATA+CGG - chr5_4:5297795-5297814 Msa0832250:three_prime_UTR 15.0%
!! GAGAAAATAATAATATATAG+AGG + chr5_4:5299236-5299255 None:intergenic 15.0%
!! ATAAATCAAGACAATTAAGA+TGG - chr5_4:5297999-5298018 Msa0832250:three_prime_UTR 20.0%
!! TAAATCAAGACAATTAAGAT+GGG - chr5_4:5298000-5298019 Msa0832250:three_prime_UTR 20.0%
!!! ACTAACTAGGTTTTTAATAT+TGG - chr5_4:5298671-5298690 Msa0832250:CDS 20.0%
!! AAAATCAAATTGTAAGGTAA+CGG - chr5_4:5298711-5298730 Msa0832250:CDS 20.0%
!!! TGGTATTTTCAATACTAATA+AGG - chr5_4:5298835-5298854 Msa0832250:CDS 20.0%
!! TTTGGAGATCAAATATATTT+CGG - chr5_4:5298911-5298930 Msa0832250:CDS 20.0%
!!! CATGTTTTTTTAATTAGGAA+AGG + chr5_4:5298956-5298975 None:intergenic 20.0%
!! AATAGATAAAGTAGAAGAAA+AGG + chr5_4:5299002-5299021 None:intergenic 20.0%
!!! TTAGACTAATTAAGTTTTGT+GGG - chr5_4:5299066-5299085 Msa0832250:CDS 20.0%
!!! ACAACTTAGTTTTAATCTAA+TGG + chr5_4:5299512-5299531 None:intergenic 20.0%
!! ATAAATCAAGACAATTAAGA+TGG - chr5_4:5297999-5298018 Msa0832250:three_prime_UTR 20.0%
!! TAAATCAAGACAATTAAGAT+GGG - chr5_4:5298000-5298019 Msa0832250:three_prime_UTR 20.0%
!!! ACTAACTAGGTTTTTAATAT+TGG - chr5_4:5298671-5298690 Msa0832250:CDS 20.0%
!! AAAATCAAATTGTAAGGTAA+CGG - chr5_4:5298711-5298730 Msa0832250:CDS 20.0%
!!! TGGTATTTTCAATACTAATA+AGG - chr5_4:5298835-5298854 Msa0832250:CDS 20.0%
!! TTTGGAGATCAAATATATTT+CGG - chr5_4:5298911-5298930 Msa0832250:CDS 20.0%
!!! CATGTTTTTTTAATTAGGAA+AGG + chr5_4:5298956-5298975 None:intergenic 20.0%
!! AATAGATAAAGTAGAAGAAA+AGG + chr5_4:5299002-5299021 None:intergenic 20.0%
!!! TTAGACTAATTAAGTTTTGT+GGG - chr5_4:5299066-5299085 Msa0832250:CDS 20.0%
!!! ACAACTTAGTTTTAATCTAA+TGG + chr5_4:5299512-5299531 None:intergenic 20.0%
! ATCACTACTAATTACTAACT+AGG - chr5_4:5298658-5298677 Msa0832250:CDS 25.0%
!!! CCTTACAATTTGATTTTGTA+AGG + chr5_4:5298708-5298727 None:intergenic 25.0%
! CCTTACAAAATCAAATTGTA+AGG - chr5_4:5298705-5298724 Msa0832250:CDS 25.0%
! AAATCAAATTGTAAGGTAAC+GGG - chr5_4:5298712-5298731 Msa0832250:CDS 25.0%
! TTGATATGAGTCAAACTAAA+GGG + chr5_4:5298884-5298903 None:intergenic 25.0%
! TTTGATATGAGTCAAACTAA+AGG + chr5_4:5298885-5298904 None:intergenic 25.0%
!!! ACTCATATCAAAGCTTTATT+TGG - chr5_4:5298893-5298912 Msa0832250:CDS 25.0%
! AGATCAAATATATTTCGGTT+CGG - chr5_4:5298916-5298935 Msa0832250:CDS 25.0%
!! GTTAGACTAATTAAGTTTTG+TGG - chr5_4:5299065-5299084 Msa0832250:CDS 25.0%
!! ATTATTTTCTCGATGTGATA+TGG - chr5_4:5299245-5299264 Msa0832250:five_prime_UTR 25.0%
!! TTATTTTCTCGATGTGATAT+GGG - chr5_4:5299246-5299265 Msa0832250:five_prime_UTR 25.0%
! ATCACTACTAATTACTAACT+AGG - chr5_4:5298658-5298677 Msa0832250:CDS 25.0%
!!! CCTTACAATTTGATTTTGTA+AGG + chr5_4:5298708-5298727 None:intergenic 25.0%
! CCTTACAAAATCAAATTGTA+AGG - chr5_4:5298705-5298724 Msa0832250:CDS 25.0%
! AAATCAAATTGTAAGGTAAC+GGG - chr5_4:5298712-5298731 Msa0832250:CDS 25.0%
! TTGATATGAGTCAAACTAAA+GGG + chr5_4:5298884-5298903 None:intergenic 25.0%
! TTTGATATGAGTCAAACTAA+AGG + chr5_4:5298885-5298904 None:intergenic 25.0%
!!! ACTCATATCAAAGCTTTATT+TGG - chr5_4:5298893-5298912 Msa0832250:CDS 25.0%
! AGATCAAATATATTTCGGTT+CGG - chr5_4:5298916-5298935 Msa0832250:CDS 25.0%
!! GTTAGACTAATTAAGTTTTG+TGG - chr5_4:5299065-5299084 Msa0832250:CDS 25.0%
!! ATTATTTTCTCGATGTGATA+TGG - chr5_4:5299245-5299264 Msa0832250:five_prime_UTR 25.0%
!! TTATTTTCTCGATGTGATAT+GGG - chr5_4:5299246-5299265 Msa0832250:five_prime_UTR 25.0%
ATGTATATATCATGAGCATG+AGG + chr5_4:5297780-5297799 None:intergenic 30.0%
!! ACTTAAGAGTTTGTTGGTAT+GGG + chr5_4:5297848-5297867 None:intergenic 30.0%
TTGAAGACTTAAGAGTTTGT+TGG + chr5_4:5297854-5297873 None:intergenic 30.0%
TGATATGAGTCAAACTAAAG+GGG + chr5_4:5298883-5298902 None:intergenic 30.0%
TATTATATTGCATTGCAGAG+TGG - chr5_4:5299091-5299110 Msa0832250:CDS 30.0%
ATTATATTGCATTGCAGAGT+GGG - chr5_4:5299092-5299111 Msa0832250:CDS 30.0%
!! ATGATGGTTGGATTAGTATT+TGG - chr5_4:5299139-5299158 Msa0832250:CDS 30.0%
ATTCTTGAGACATTCATTTC+AGG - chr5_4:5299297-5299316 Msa0832250:five_prime_UTR 30.0%
TTCTTGAGACATTCATTTCA+GGG - chr5_4:5299298-5299317 Msa0832250:five_prime_UTR 30.0%
ATTCAAAAGAAAGCAACGAA+TGG + chr5_4:5299387-5299406 None:intergenic 30.0%
ATGTATATATCATGAGCATG+AGG + chr5_4:5297780-5297799 None:intergenic 30.0%
!! ACTTAAGAGTTTGTTGGTAT+GGG + chr5_4:5297848-5297867 None:intergenic 30.0%
TTGAAGACTTAAGAGTTTGT+TGG + chr5_4:5297854-5297873 None:intergenic 30.0%
TGATATGAGTCAAACTAAAG+GGG + chr5_4:5298883-5298902 None:intergenic 30.0%
TATTATATTGCATTGCAGAG+TGG - chr5_4:5299091-5299110 Msa0832250:CDS 30.0%
ATTATATTGCATTGCAGAGT+GGG - chr5_4:5299092-5299111 Msa0832250:CDS 30.0%
!! ATGATGGTTGGATTAGTATT+TGG - chr5_4:5299139-5299158 Msa0832250:CDS 30.0%
ATTCTTGAGACATTCATTTC+AGG - chr5_4:5299297-5299316 Msa0832250:five_prime_UTR 30.0%
TTCTTGAGACATTCATTTCA+GGG - chr5_4:5299298-5299317 Msa0832250:five_prime_UTR 30.0%
ATTCAAAAGAAAGCAACGAA+TGG + chr5_4:5299387-5299406 None:intergenic 30.0%
CGTTTGTGACATTCCATTAT+CGG - chr5_4:5297707-5297726 Msa0832250:three_prime_UTR 35.0%
TTATCACAGTGAGATTAAGC+TGG - chr5_4:5297730-5297749 Msa0832250:three_prime_UTR 35.0%
GAGATTAAGCTGGAAATGTT+TGG - chr5_4:5297740-5297759 Msa0832250:three_prime_UTR 35.0%
AGGTTAAATAGGCAGGATAT+AGG + chr5_4:5297823-5297842 None:intergenic 35.0%
!! GACTTAAGAGTTTGTTGGTA+TGG + chr5_4:5297849-5297868 None:intergenic 35.0%
!!! CACACATCATATAGTTTTGG+TGG - chr5_4:5298023-5298042 Msa0832250:exon 35.0%
!!! CATCATATAGTTTTGGTGGT+TGG - chr5_4:5298027-5298046 Msa0832250:exon 35.0%
! TGATTTTGTAAGGACGTGTT+AGG + chr5_4:5298698-5298717 None:intergenic 35.0%
AAAGGGGTTGTGTATGATAT+GGG + chr5_4:5298867-5298886 None:intergenic 35.0%
TAAAGGGGTTGTGTATGATA+TGG + chr5_4:5298868-5298887 None:intergenic 35.0%
TTATATTGCATTGCAGAGTG+GGG - chr5_4:5299093-5299112 Msa0832250:CDS 35.0%
TCTTGAGACATTCATTTCAG+GGG - chr5_4:5299299-5299318 Msa0832250:five_prime_UTR 35.0%
!! GGGAGGTTTTGTATTAATTG+AGG - chr5_4:5299319-5299338 Msa0832250:five_prime_UTR 35.0%
AAAAGAAAGCAACGAATGGA+TGG + chr5_4:5299383-5299402 None:intergenic 35.0%
! ATTTACGTAGTTCTGTAACG+TGG - chr5_4:5299467-5299486 Msa0832250:five_prime_UTR 35.0%
! TTTACGTAGTTCTGTAACGT+GGG - chr5_4:5299468-5299487 Msa0832250:five_prime_UTR 35.0%
CGTTTGTGACATTCCATTAT+CGG - chr5_4:5297707-5297726 Msa0832250:three_prime_UTR 35.0%
TTATCACAGTGAGATTAAGC+TGG - chr5_4:5297730-5297749 Msa0832250:three_prime_UTR 35.0%
GAGATTAAGCTGGAAATGTT+TGG - chr5_4:5297740-5297759 Msa0832250:three_prime_UTR 35.0%
AGGTTAAATAGGCAGGATAT+AGG + chr5_4:5297823-5297842 None:intergenic 35.0%
!! GACTTAAGAGTTTGTTGGTA+TGG + chr5_4:5297849-5297868 None:intergenic 35.0%
!!! CACACATCATATAGTTTTGG+TGG - chr5_4:5298023-5298042 Msa0832250:exon 35.0%
!!! CATCATATAGTTTTGGTGGT+TGG - chr5_4:5298027-5298046 Msa0832250:exon 35.0%
! TGATTTTGTAAGGACGTGTT+AGG + chr5_4:5298698-5298717 None:intergenic 35.0%
AAAGGGGTTGTGTATGATAT+GGG + chr5_4:5298867-5298886 None:intergenic 35.0%
TAAAGGGGTTGTGTATGATA+TGG + chr5_4:5298868-5298887 None:intergenic 35.0%
TTATATTGCATTGCAGAGTG+GGG - chr5_4:5299093-5299112 Msa0832250:CDS 35.0%
TCTTGAGACATTCATTTCAG+GGG - chr5_4:5299299-5299318 Msa0832250:five_prime_UTR 35.0%
!! GGGAGGTTTTGTATTAATTG+AGG - chr5_4:5299319-5299338 Msa0832250:five_prime_UTR 35.0%
AAAAGAAAGCAACGAATGGA+TGG + chr5_4:5299383-5299402 None:intergenic 35.0%
! ATTTACGTAGTTCTGTAACG+TGG - chr5_4:5299467-5299486 Msa0832250:five_prime_UTR 35.0%
! TTTACGTAGTTCTGTAACGT+GGG - chr5_4:5299468-5299487 Msa0832250:five_prime_UTR 35.0%
CTCACTGTGATAACCGATAA+TGG + chr5_4:5297723-5297742 None:intergenic 40.0%
TGGTATGGGAGAGGTTAAAT+AGG + chr5_4:5297834-5297853 None:intergenic 40.0%
! GGGCACACATCATATAGTTT+TGG - chr5_4:5298020-5298039 Msa0832250:exon 40.0%
TAAGAGTAAAGCCCCTACAT+TGG - chr5_4:5298521-5298540 Msa0832250:intron 40.0%
CTTACATCATCAGTACCAGA+TGG + chr5_4:5298612-5298631 None:intergenic 40.0%
ATGCGTGCATCTCTCTATAA+AGG - chr5_4:5298809-5298828 Msa0832250:CDS 40.0%
GCATCTCTCTATAAAGGTCT+TGG - chr5_4:5298815-5298834 Msa0832250:CDS 40.0%
AAGGGGTTGTGTATGATATG+GGG + chr5_4:5298866-5298885 None:intergenic 40.0%
GTTGTGGTCACATAAGATGA+TGG - chr5_4:5299123-5299142 Msa0832250:CDS 40.0%
! TGGTCACATAAGATGATGGT+TGG - chr5_4:5299127-5299146 Msa0832250:CDS 40.0%
! TTACGTAGTTCTGTAACGTG+GGG - chr5_4:5299469-5299488 Msa0832250:five_prime_UTR 40.0%
CTCACTGTGATAACCGATAA+TGG + chr5_4:5297723-5297742 None:intergenic 40.0%
TGGTATGGGAGAGGTTAAAT+AGG + chr5_4:5297834-5297853 None:intergenic 40.0%
! GGGCACACATCATATAGTTT+TGG - chr5_4:5298020-5298039 Msa0832250:exon 40.0%
TAAGAGTAAAGCCCCTACAT+TGG - chr5_4:5298521-5298540 Msa0832250:intron 40.0%
CTTACATCATCAGTACCAGA+TGG + chr5_4:5298612-5298631 None:intergenic 40.0%
ATGCGTGCATCTCTCTATAA+AGG - chr5_4:5298809-5298828 Msa0832250:CDS 40.0%
GCATCTCTCTATAAAGGTCT+TGG - chr5_4:5298815-5298834 Msa0832250:CDS 40.0%
AAGGGGTTGTGTATGATATG+GGG + chr5_4:5298866-5298885 None:intergenic 40.0%
GTTGTGGTCACATAAGATGA+TGG - chr5_4:5299123-5299142 Msa0832250:CDS 40.0%
! TGGTCACATAAGATGATGGT+TGG - chr5_4:5299127-5299146 Msa0832250:CDS 40.0%
! TTACGTAGTTCTGTAACGTG+GGG - chr5_4:5299469-5299488 Msa0832250:five_prime_UTR 40.0%
ATGGGAGAGGTTAAATAGGC+AGG + chr5_4:5297830-5297849 None:intergenic 45.0%
!! AGAGTTTGTTGGTATGGGAG+AGG + chr5_4:5297843-5297862 None:intergenic 45.0%
ATATAACCTGCGCATGCAAC+TGG + chr5_4:5297936-5297955 None:intergenic 45.0%
AGAAGATTGAACAGGTGGAG+GGG + chr5_4:5298172-5298191 None:intergenic 45.0%
GAGAAGATTGAACAGGTGGA+GGG + chr5_4:5298173-5298192 None:intergenic 45.0%
GCTTTACTCTTAAGCTTGGC+AGG + chr5_4:5298513-5298532 None:intergenic 45.0%
AGGGGCTTTACTCTTAAGCT+TGG + chr5_4:5298517-5298536 None:intergenic 45.0%
AGAGTACAGGTGCCAATGTA+GGG + chr5_4:5298536-5298555 None:intergenic 45.0%
TACCAGATGGAGAGATAGAG+GGG + chr5_4:5298599-5298618 None:intergenic 45.0%
GTACCAGATGGAGAGATAGA+GGG + chr5_4:5298600-5298619 None:intergenic 45.0%
AGTACCAGATGGAGAGATAG+AGG + chr5_4:5298601-5298620 None:intergenic 45.0%
!! CTGAGTTCTGAAGAGAAGAC+AGG + chr5_4:5299200-5299219 None:intergenic 45.0%
TGAGACATTCATTTCAGGGG+AGG - chr5_4:5299302-5299321 Msa0832250:five_prime_UTR 45.0%
ATGGGAGAGGTTAAATAGGC+AGG + chr5_4:5297830-5297849 None:intergenic 45.0%
!! AGAGTTTGTTGGTATGGGAG+AGG + chr5_4:5297843-5297862 None:intergenic 45.0%
ATATAACCTGCGCATGCAAC+TGG + chr5_4:5297936-5297955 None:intergenic 45.0%
AGAAGATTGAACAGGTGGAG+GGG + chr5_4:5298172-5298191 None:intergenic 45.0%
GAGAAGATTGAACAGGTGGA+GGG + chr5_4:5298173-5298192 None:intergenic 45.0%
GCTTTACTCTTAAGCTTGGC+AGG + chr5_4:5298513-5298532 None:intergenic 45.0%
AGGGGCTTTACTCTTAAGCT+TGG + chr5_4:5298517-5298536 None:intergenic 45.0%
AGAGTACAGGTGCCAATGTA+GGG + chr5_4:5298536-5298555 None:intergenic 45.0%
TACCAGATGGAGAGATAGAG+GGG + chr5_4:5298599-5298618 None:intergenic 45.0%
GTACCAGATGGAGAGATAGA+GGG + chr5_4:5298600-5298619 None:intergenic 45.0%
AGTACCAGATGGAGAGATAG+AGG + chr5_4:5298601-5298620 None:intergenic 45.0%
!! CTGAGTTCTGAAGAGAAGAC+AGG + chr5_4:5299200-5299219 None:intergenic 45.0%
TGAGACATTCATTTCAGGGG+AGG - chr5_4:5299302-5299321 Msa0832250:five_prime_UTR 45.0%
ACAATGACCTCTTTCACCCC+TGG + chr5_4:5297672-5297691 None:intergenic 50.0%
! TGGTGCTGGAGATGAGTTTG+GGG + chr5_4:5298106-5298125 None:intergenic 50.0%
! GTGGTGCTGGAGATGAGTTT+GGG + chr5_4:5298107-5298126 None:intergenic 50.0%
GGTGTATTAGCAGGAGGAGT+GGG + chr5_4:5298129-5298148 None:intergenic 50.0%
AGGTGTATTAGCAGGAGGAG+TGG + chr5_4:5298130-5298149 None:intergenic 50.0%
! GTTGGAGGTGTATTAGCAGG+AGG + chr5_4:5298135-5298154 None:intergenic 50.0%
! GTGGTTGGAGGTGTATTAGC+AGG + chr5_4:5298138-5298157 None:intergenic 50.0%
GGAGAAGATTGAACAGGTGG+AGG + chr5_4:5298174-5298193 None:intergenic 50.0%
GGAGGAGAAGATTGAACAGG+TGG + chr5_4:5298177-5298196 None:intergenic 50.0%
GGTGGAGGAGAAGATTGAAC+AGG + chr5_4:5298180-5298199 None:intergenic 50.0%
AGGTGGAGGAGAAGACTGAA+CGG + chr5_4:5298265-5298284 None:intergenic 50.0%
ACTCTTAAGCTTGGCAGGAG+CGG + chr5_4:5298508-5298527 None:intergenic 50.0%
GAGTACAGGTGCCAATGTAG+GGG + chr5_4:5298535-5298554 None:intergenic 50.0%
! GAGAGTACAGGTGCCAATGT+AGG + chr5_4:5298537-5298556 None:intergenic 50.0%
ACCAGATGGAGAGATAGAGG+GGG + chr5_4:5298598-5298617 None:intergenic 50.0%
CCATGCGCGCACACAAAATT+TGG + chr5_4:5299031-5299050 None:intergenic 50.0%
! CCAAATTTTGTGTGCGCGCA+TGG - chr5_4:5299028-5299047 Msa0832250:CDS 50.0%
! CGATCTAGAACAGCAAGGAC+AGG + chr5_4:5299174-5299193 None:intergenic 50.0%
!! GGTGTCGATCTAGAACAGCA+AGG + chr5_4:5299179-5299198 None:intergenic 50.0%
ACAATGACCTCTTTCACCCC+TGG + chr5_4:5297672-5297691 None:intergenic 50.0%
! TGGTGCTGGAGATGAGTTTG+GGG + chr5_4:5298106-5298125 None:intergenic 50.0%
! GTGGTGCTGGAGATGAGTTT+GGG + chr5_4:5298107-5298126 None:intergenic 50.0%
GGTGTATTAGCAGGAGGAGT+GGG + chr5_4:5298129-5298148 None:intergenic 50.0%
AGGTGTATTAGCAGGAGGAG+TGG + chr5_4:5298130-5298149 None:intergenic 50.0%
! GTTGGAGGTGTATTAGCAGG+AGG + chr5_4:5298135-5298154 None:intergenic 50.0%
! GTGGTTGGAGGTGTATTAGC+AGG + chr5_4:5298138-5298157 None:intergenic 50.0%
GGAGAAGATTGAACAGGTGG+AGG + chr5_4:5298174-5298193 None:intergenic 50.0%
GGAGGAGAAGATTGAACAGG+TGG + chr5_4:5298177-5298196 None:intergenic 50.0%
GGTGGAGGAGAAGATTGAAC+AGG + chr5_4:5298180-5298199 None:intergenic 50.0%
AGGTGGAGGAGAAGACTGAA+CGG + chr5_4:5298265-5298284 None:intergenic 50.0%
ACTCTTAAGCTTGGCAGGAG+CGG + chr5_4:5298508-5298527 None:intergenic 50.0%
GAGTACAGGTGCCAATGTAG+GGG + chr5_4:5298535-5298554 None:intergenic 50.0%
! GAGAGTACAGGTGCCAATGT+AGG + chr5_4:5298537-5298556 None:intergenic 50.0%
ACCAGATGGAGAGATAGAGG+GGG + chr5_4:5298598-5298617 None:intergenic 50.0%
CCATGCGCGCACACAAAATT+TGG + chr5_4:5299031-5299050 None:intergenic 50.0%
! CCAAATTTTGTGTGCGCGCA+TGG - chr5_4:5299028-5299047 Msa0832250:CDS 50.0%
! CGATCTAGAACAGCAAGGAC+AGG + chr5_4:5299174-5299193 None:intergenic 50.0%
!! GGTGTCGATCTAGAACAGCA+AGG + chr5_4:5299179-5299198 None:intergenic 50.0%
! TGCGCTGTGTTTTCCAGCGT+AGG - chr5_4:5298057-5298076 Msa0832250:CDS 55.0%
! GGAGGTGGATGGAGCTTGTT+GGG + chr5_4:5298085-5298104 None:intergenic 55.0%
GATGAGTTTGGGGAGGTGGA+TGG + chr5_4:5298096-5298115 None:intergenic 55.0%
TGGAGATGAGTTTGGGGAGG+TGG + chr5_4:5298100-5298119 None:intergenic 55.0%
TGCTGGAGATGAGTTTGGGG+AGG + chr5_4:5298103-5298122 None:intergenic 55.0%
! GGTGGTGCTGGAGATGAGTT+TGG + chr5_4:5298108-5298127 None:intergenic 55.0%
GTATTAGCAGGAGGAGTGGG+TGG + chr5_4:5298126-5298145 None:intergenic 55.0%
AGATTGAACAGGTGGAGGGG+AGG + chr5_4:5298169-5298188 None:intergenic 55.0%
TGGAGGTGGAGAAGACTGCA+CGG + chr5_4:5298202-5298221 None:intergenic 55.0%
AGGAGAAGACTGAACGGGAG+GGG + chr5_4:5298259-5298278 None:intergenic 55.0%
GAGGAGAAGACTGAACGGGA+GGG + chr5_4:5298260-5298279 None:intergenic 55.0%
GGTGGAGGAGAAGACTGAAC+GGG + chr5_4:5298264-5298283 None:intergenic 55.0%
!! TTGCTGAACTGGTGGTGGAG+CGG + chr5_4:5298292-5298311 None:intergenic 55.0%
GGAGATTGCTGAACTGGTGG+TGG + chr5_4:5298297-5298316 None:intergenic 55.0%
GGAGGAGATTGCTGAACTGG+TGG + chr5_4:5298300-5298319 None:intergenic 55.0%
GGAGGAGGAGATTGCTGAAC+TGG + chr5_4:5298303-5298322 None:intergenic 55.0%
AACAGGTGGAGGAGTGAGTG+GGG + chr5_4:5298328-5298347 None:intergenic 55.0%
GAACAGGTGGAGGAGTGAGT+GGG + chr5_4:5298329-5298348 None:intergenic 55.0%
TGAACAGGTGGAGGAGTGAG+TGG + chr5_4:5298330-5298349 None:intergenic 55.0%
GGAGTAGACTGAACAGGTGG+AGG + chr5_4:5298339-5298358 None:intergenic 55.0%
GGTGGAGTAGACTGAACAGG+TGG + chr5_4:5298342-5298361 None:intergenic 55.0%
!! GGTGGTGGAGTAGACTGAAC+AGG + chr5_4:5298345-5298364 None:intergenic 55.0%
! AGAATGGTGGAGGTGAGGCA+GGG + chr5_4:5298380-5298399 None:intergenic 55.0%
! AGGAGAGAATGGTGGAGGTG+AGG + chr5_4:5298385-5298404 None:intergenic 55.0%
AGTTGCTGGAGGTGGAGTTG+CGG + chr5_4:5298427-5298446 None:intergenic 55.0%
AGAGGAGTAGGTGTGAGTGC+CGG + chr5_4:5298456-5298475 None:intergenic 55.0%
GGAGGAGATGAGAGAGGAGT+AGG + chr5_4:5298468-5298487 None:intergenic 55.0%
GTTGCTGGAGGAGATGAGAG+AGG + chr5_4:5298474-5298493 None:intergenic 55.0%
CTCTTAAGCTTGGCAGGAGC+GGG + chr5_4:5298507-5298526 None:intergenic 55.0%
! GCATCTGATGGCGAGAGTAC+AGG + chr5_4:5298549-5298568 None:intergenic 55.0%
TCCCCCTCTATCTCTCCATC+TGG - chr5_4:5298594-5298613 Msa0832250:CDS 55.0%
AGAGTGGGGCAGAGAAGTTG+TGG - chr5_4:5299107-5299126 Msa0832250:CDS 55.0%
ACGTGGGGAGACTCTACAAC+AGG - chr5_4:5299484-5299503 Msa0832250:five_prime_UTR 55.0%
ATGACCTCTTTCACCCCTGG+TGG + chr5_4:5297669-5297688 None:intergenic 55.0%
! TGCGCTGTGTTTTCCAGCGT+AGG - chr5_4:5298057-5298076 Msa0832250:CDS 55.0%
! GGAGGTGGATGGAGCTTGTT+GGG + chr5_4:5298085-5298104 None:intergenic 55.0%
GATGAGTTTGGGGAGGTGGA+TGG + chr5_4:5298096-5298115 None:intergenic 55.0%
TGGAGATGAGTTTGGGGAGG+TGG + chr5_4:5298100-5298119 None:intergenic 55.0%
TGCTGGAGATGAGTTTGGGG+AGG + chr5_4:5298103-5298122 None:intergenic 55.0%
! GGTGGTGCTGGAGATGAGTT+TGG + chr5_4:5298108-5298127 None:intergenic 55.0%
GTATTAGCAGGAGGAGTGGG+TGG + chr5_4:5298126-5298145 None:intergenic 55.0%
AGATTGAACAGGTGGAGGGG+AGG + chr5_4:5298169-5298188 None:intergenic 55.0%
TGGAGGTGGAGAAGACTGCA+CGG + chr5_4:5298202-5298221 None:intergenic 55.0%
AGGAGAAGACTGAACGGGAG+GGG + chr5_4:5298259-5298278 None:intergenic 55.0%
GAGGAGAAGACTGAACGGGA+GGG + chr5_4:5298260-5298279 None:intergenic 55.0%
GGTGGAGGAGAAGACTGAAC+GGG + chr5_4:5298264-5298283 None:intergenic 55.0%
!! TTGCTGAACTGGTGGTGGAG+CGG + chr5_4:5298292-5298311 None:intergenic 55.0%
GGAGATTGCTGAACTGGTGG+TGG + chr5_4:5298297-5298316 None:intergenic 55.0%
GGAGGAGATTGCTGAACTGG+TGG + chr5_4:5298300-5298319 None:intergenic 55.0%
GGAGGAGGAGATTGCTGAAC+TGG + chr5_4:5298303-5298322 None:intergenic 55.0%
AACAGGTGGAGGAGTGAGTG+GGG + chr5_4:5298328-5298347 None:intergenic 55.0%
GAACAGGTGGAGGAGTGAGT+GGG + chr5_4:5298329-5298348 None:intergenic 55.0%
TGAACAGGTGGAGGAGTGAG+TGG + chr5_4:5298330-5298349 None:intergenic 55.0%
GGAGTAGACTGAACAGGTGG+AGG + chr5_4:5298339-5298358 None:intergenic 55.0%
GGTGGAGTAGACTGAACAGG+TGG + chr5_4:5298342-5298361 None:intergenic 55.0%
!! GGTGGTGGAGTAGACTGAAC+AGG + chr5_4:5298345-5298364 None:intergenic 55.0%
! AGAATGGTGGAGGTGAGGCA+GGG + chr5_4:5298380-5298399 None:intergenic 55.0%
! AGGAGAGAATGGTGGAGGTG+AGG + chr5_4:5298385-5298404 None:intergenic 55.0%
AGTTGCTGGAGGTGGAGTTG+CGG + chr5_4:5298427-5298446 None:intergenic 55.0%
AGAGGAGTAGGTGTGAGTGC+CGG + chr5_4:5298456-5298475 None:intergenic 55.0%
GGAGGAGATGAGAGAGGAGT+AGG + chr5_4:5298468-5298487 None:intergenic 55.0%
GTTGCTGGAGGAGATGAGAG+AGG + chr5_4:5298474-5298493 None:intergenic 55.0%
CTCTTAAGCTTGGCAGGAGC+GGG + chr5_4:5298507-5298526 None:intergenic 55.0%
! GCATCTGATGGCGAGAGTAC+AGG + chr5_4:5298549-5298568 None:intergenic 55.0%
TCCCCCTCTATCTCTCCATC+TGG - chr5_4:5298594-5298613 Msa0832250:CDS 55.0%
AGAGTGGGGCAGAGAAGTTG+TGG - chr5_4:5299107-5299126 Msa0832250:CDS 55.0%
ACGTGGGGAGACTCTACAAC+AGG - chr5_4:5299484-5299503 Msa0832250:five_prime_UTR 55.0%
AACCTGCGCATGCAACTGGC+AGG + chr5_4:5297932-5297951 None:intergenic 60.0%
!! AGCTTGTTGGGCTCCTACGC+TGG + chr5_4:5298073-5298092 None:intergenic 60.0%
GGGAGGTGGATGGAGCTTGT+TGG + chr5_4:5298086-5298105 None:intergenic 60.0%
GAGGCTTGAGGAGTGGTTGG+AGG + chr5_4:5298150-5298169 None:intergenic 60.0%
GGAGGTGGAGAAGACTGCAC+GGG + chr5_4:5298201-5298220 None:intergenic 60.0%
!! AGTGGACTGAGCTGGTGGAG+GGG + chr5_4:5298235-5298254 None:intergenic 60.0%
!! GAGTGGACTGAGCTGGTGGA+GGG + chr5_4:5298236-5298255 None:intergenic 60.0%
GGAGAAGACTGAACGGGAGG+GGG + chr5_4:5298258-5298277 None:intergenic 60.0%
GGAGGAGAAGACTGAACGGG+AGG + chr5_4:5298261-5298280 None:intergenic 60.0%
!! ACTGGTGGTGGAGCGGATAC+AGG + chr5_4:5298285-5298304 None:intergenic 60.0%
! AATGGTGGAGGTGAGGCAGG+GGG + chr5_4:5298378-5298397 None:intergenic 60.0%
! GAATGGTGGAGGTGAGGCAG+GGG + chr5_4:5298379-5298398 None:intergenic 60.0%
! GAGAATGGTGGAGGTGAGGC+AGG + chr5_4:5298381-5298400 None:intergenic 60.0%
GTAGCAGGGGGAGGAGAGAA+TGG + chr5_4:5298396-5298415 None:intergenic 60.0%
TTGCGGGAGGTGGAGTAGCA+GGG + chr5_4:5298410-5298429 None:intergenic 60.0%
GTTGCTGGAGGTGGAGTTGC+GGG + chr5_4:5298426-5298445 None:intergenic 60.0%
ACCTCCAGCAACTCCTCCTC+CGG - chr5_4:5298434-5298453 Msa0832250:intron 60.0%
AGAGAAGAGAGTCCGGGAGC+GGG + chr5_4:5298573-5298592 None:intergenic 60.0%
GAGAGAAGAGAGTCCGGGAG+CGG + chr5_4:5298574-5298593 None:intergenic 60.0%
GGGGAGAGAGAAGAGAGTCC+GGG + chr5_4:5298579-5298598 None:intergenic 60.0%
GGGGGAGAGAGAAGAGAGTC+CGG + chr5_4:5298580-5298599 None:intergenic 60.0%
AACCTGCGCATGCAACTGGC+AGG + chr5_4:5297932-5297951 None:intergenic 60.0%
!! AGCTTGTTGGGCTCCTACGC+TGG + chr5_4:5298073-5298092 None:intergenic 60.0%
GGGAGGTGGATGGAGCTTGT+TGG + chr5_4:5298086-5298105 None:intergenic 60.0%
GAGGCTTGAGGAGTGGTTGG+AGG + chr5_4:5298150-5298169 None:intergenic 60.0%
GGAGGTGGAGAAGACTGCAC+GGG + chr5_4:5298201-5298220 None:intergenic 60.0%
!! AGTGGACTGAGCTGGTGGAG+GGG + chr5_4:5298235-5298254 None:intergenic 60.0%
!! GAGTGGACTGAGCTGGTGGA+GGG + chr5_4:5298236-5298255 None:intergenic 60.0%
GGAGAAGACTGAACGGGAGG+GGG + chr5_4:5298258-5298277 None:intergenic 60.0%
GGAGGAGAAGACTGAACGGG+AGG + chr5_4:5298261-5298280 None:intergenic 60.0%
!! ACTGGTGGTGGAGCGGATAC+AGG + chr5_4:5298285-5298304 None:intergenic 60.0%
! AATGGTGGAGGTGAGGCAGG+GGG + chr5_4:5298378-5298397 None:intergenic 60.0%
! GAATGGTGGAGGTGAGGCAG+GGG + chr5_4:5298379-5298398 None:intergenic 60.0%
! GAGAATGGTGGAGGTGAGGC+AGG + chr5_4:5298381-5298400 None:intergenic 60.0%
GTAGCAGGGGGAGGAGAGAA+TGG + chr5_4:5298396-5298415 None:intergenic 60.0%
TTGCGGGAGGTGGAGTAGCA+GGG + chr5_4:5298410-5298429 None:intergenic 60.0%
GTTGCTGGAGGTGGAGTTGC+GGG + chr5_4:5298426-5298445 None:intergenic 60.0%
ACCTCCAGCAACTCCTCCTC+CGG - chr5_4:5298434-5298453 Msa0832250:intron 60.0%
AGAGAAGAGAGTCCGGGAGC+GGG + chr5_4:5298573-5298592 None:intergenic 60.0%
GAGAGAAGAGAGTCCGGGAG+CGG + chr5_4:5298574-5298593 None:intergenic 60.0%
GGGGAGAGAGAAGAGAGTCC+GGG + chr5_4:5298579-5298598 None:intergenic 60.0%
GGGGGAGAGAGAAGAGAGTC+CGG + chr5_4:5298580-5298599 None:intergenic 60.0%
GACCTGCCAGTTGCATGCGC+AGG - chr5_4:5297927-5297946 Msa0832250:three_prime_UTR 65.0%
GGGGAGGCTTGAGGAGTGGT+TGG + chr5_4:5298153-5298172 None:intergenic 65.0%
TGGAGGGGAGGCTTGAGGAG+TGG + chr5_4:5298157-5298176 None:intergenic 65.0%
ACAGGTGGAGGGGAGGCTTG+AGG + chr5_4:5298162-5298181 None:intergenic 65.0%
GGAGAAGACTGCACGGGTGG+AGG + chr5_4:5298195-5298214 None:intergenic 65.0%
GGTGGAGAAGACTGCACGGG+TGG + chr5_4:5298198-5298217 None:intergenic 65.0%
GGGGAGGACTGAACTGGAGG+TGG + chr5_4:5298216-5298235 None:intergenic 65.0%
GGAGGGGAGGACTGAACTGG+AGG + chr5_4:5298219-5298238 None:intergenic 65.0%
GGTGGAGGGGAGGACTGAAC+TGG + chr5_4:5298222-5298241 None:intergenic 65.0%
!! GGAGTGGACTGAGCTGGTGG+AGG + chr5_4:5298237-5298256 None:intergenic 65.0%
AGACTGAACGGGAGGGGGAG+TGG + chr5_4:5298253-5298272 None:intergenic 65.0%
GGTGGAGCGGATACAGGTGG+AGG + chr5_4:5298279-5298298 None:intergenic 65.0%
!! GGTGGTGGAGCGGATACAGG+TGG + chr5_4:5298282-5298301 None:intergenic 65.0%
GGAGTGAGTGGGGTTGGAGG+AGG + chr5_4:5298318-5298337 None:intergenic 65.0%
GGAGGAGTGAGTGGGGTTGG+AGG + chr5_4:5298321-5298340 None:intergenic 65.0%
GGTGGAGGAGTGAGTGGGGT+TGG + chr5_4:5298324-5298343 None:intergenic 65.0%
GGGGGAGGAGAGAATGGTGG+AGG + chr5_4:5298390-5298409 None:intergenic 65.0%
GCAGGGGGAGGAGAGAATGG+TGG + chr5_4:5298393-5298412 None:intergenic 65.0%
TGCGGGAGGTGGAGTAGCAG+GGG + chr5_4:5298409-5298428 None:intergenic 65.0%
GTTGCGGGAGGTGGAGTAGC+AGG + chr5_4:5298411-5298430 None:intergenic 65.0%
GGAGGAGGAGTTGCTGGAGG+TGG + chr5_4:5298435-5298454 None:intergenic 65.0%
! AGTGCCGGAGGAGGAGTTGC+TGG + chr5_4:5298441-5298460 None:intergenic 65.0%
!! GTAGGTGTGAGTGCCGGAGG+AGG + chr5_4:5298450-5298469 None:intergenic 65.0%
!! GGAGTAGGTGTGAGTGCCGG+AGG + chr5_4:5298453-5298472 None:intergenic 65.0%
GGAGCTGGAGTGGTTGCTGG+AGG + chr5_4:5298486-5298505 None:intergenic 65.0%
CCATCAGATGCTCCCGCTCC+CGG - chr5_4:5298558-5298577 Msa0832250:intron 65.0%
GACCTGCCAGTTGCATGCGC+AGG - chr5_4:5297927-5297946 Msa0832250:three_prime_UTR 65.0%
GGGGAGGCTTGAGGAGTGGT+TGG + chr5_4:5298153-5298172 None:intergenic 65.0%
TGGAGGGGAGGCTTGAGGAG+TGG + chr5_4:5298157-5298176 None:intergenic 65.0%
ACAGGTGGAGGGGAGGCTTG+AGG + chr5_4:5298162-5298181 None:intergenic 65.0%
GGAGAAGACTGCACGGGTGG+AGG + chr5_4:5298195-5298214 None:intergenic 65.0%
GGTGGAGAAGACTGCACGGG+TGG + chr5_4:5298198-5298217 None:intergenic 65.0%
GGGGAGGACTGAACTGGAGG+TGG + chr5_4:5298216-5298235 None:intergenic 65.0%
GGAGGGGAGGACTGAACTGG+AGG + chr5_4:5298219-5298238 None:intergenic 65.0%
GGTGGAGGGGAGGACTGAAC+TGG + chr5_4:5298222-5298241 None:intergenic 65.0%
!! GGAGTGGACTGAGCTGGTGG+AGG + chr5_4:5298237-5298256 None:intergenic 65.0%
AGACTGAACGGGAGGGGGAG+TGG + chr5_4:5298253-5298272 None:intergenic 65.0%
GGTGGAGCGGATACAGGTGG+AGG + chr5_4:5298279-5298298 None:intergenic 65.0%
!! GGTGGTGGAGCGGATACAGG+TGG + chr5_4:5298282-5298301 None:intergenic 65.0%
GGAGTGAGTGGGGTTGGAGG+AGG + chr5_4:5298318-5298337 None:intergenic 65.0%
GGAGGAGTGAGTGGGGTTGG+AGG + chr5_4:5298321-5298340 None:intergenic 65.0%
GGTGGAGGAGTGAGTGGGGT+TGG + chr5_4:5298324-5298343 None:intergenic 65.0%
GGGGGAGGAGAGAATGGTGG+AGG + chr5_4:5298390-5298409 None:intergenic 65.0%
GCAGGGGGAGGAGAGAATGG+TGG + chr5_4:5298393-5298412 None:intergenic 65.0%
TGCGGGAGGTGGAGTAGCAG+GGG + chr5_4:5298409-5298428 None:intergenic 65.0%
GTTGCGGGAGGTGGAGTAGC+AGG + chr5_4:5298411-5298430 None:intergenic 65.0%
GGAGGAGGAGTTGCTGGAGG+TGG + chr5_4:5298435-5298454 None:intergenic 65.0%
! AGTGCCGGAGGAGGAGTTGC+TGG + chr5_4:5298441-5298460 None:intergenic 65.0%
!! GTAGGTGTGAGTGCCGGAGG+AGG + chr5_4:5298450-5298469 None:intergenic 65.0%
!! GGAGTAGGTGTGAGTGCCGG+AGG + chr5_4:5298453-5298472 None:intergenic 65.0%
GGAGCTGGAGTGGTTGCTGG+AGG + chr5_4:5298486-5298505 None:intergenic 65.0%
CCATCAGATGCTCCCGCTCC+CGG - chr5_4:5298558-5298577 Msa0832250:intron 65.0%
GCAGGAGGAGTGGGTGGTGC+TGG + chr5_4:5298120-5298139 None:intergenic 70.0%
GGACTGAGCTGGTGGAGGGG+AGG + chr5_4:5298232-5298251 None:intergenic 70.0%
!! GGGGGAGTGGACTGAGCTGG+TGG + chr5_4:5298240-5298259 None:intergenic 70.0%
!! GGAGGGGGAGTGGACTGAGC+TGG + chr5_4:5298243-5298262 None:intergenic 70.0%
! GGGGGTGGTGATGCAGGTGG+TGG + chr5_4:5298360-5298379 None:intergenic 70.0%
! GCAGGGGGTGGTGATGCAGG+TGG + chr5_4:5298363-5298382 None:intergenic 70.0%
! GAGGCAGGGGGTGGTGATGC+AGG + chr5_4:5298366-5298385 None:intergenic 70.0%
GGAGGTGGAGTAGCAGGGGG+AGG + chr5_4:5298405-5298424 None:intergenic 70.0%
GCGGGAGGTGGAGTAGCAGG+GGG + chr5_4:5298408-5298427 None:intergenic 70.0%
GGAGGTGGAGTTGCGGGAGG+TGG + chr5_4:5298420-5298439 None:intergenic 70.0%
GCTGGAGGTGGAGTTGCGGG+AGG + chr5_4:5298423-5298442 None:intergenic 70.0%
GCCGGAGGAGGAGTTGCTGG+AGG + chr5_4:5298438-5298457 None:intergenic 70.0%
GCGGGAGCTGGAGTGGTTGC+TGG + chr5_4:5298489-5298508 None:intergenic 70.0%
AGCTTGGCAGGAGCGGGAGC+TGG + chr5_4:5298501-5298520 None:intergenic 70.0%
!! CCGGGAGCGGGAGCATCTGA+TGG + chr5_4:5298561-5298580 None:intergenic 70.0%
GCAGGAGGAGTGGGTGGTGC+TGG + chr5_4:5298120-5298139 None:intergenic 70.0%
GGACTGAGCTGGTGGAGGGG+AGG + chr5_4:5298232-5298251 None:intergenic 70.0%
!! GGGGGAGTGGACTGAGCTGG+TGG + chr5_4:5298240-5298259 None:intergenic 70.0%
!! GGAGGGGGAGTGGACTGAGC+TGG + chr5_4:5298243-5298262 None:intergenic 70.0%
! GGGGGTGGTGATGCAGGTGG+TGG + chr5_4:5298360-5298379 None:intergenic 70.0%
! GCAGGGGGTGGTGATGCAGG+TGG + chr5_4:5298363-5298382 None:intergenic 70.0%
! GAGGCAGGGGGTGGTGATGC+AGG + chr5_4:5298366-5298385 None:intergenic 70.0%
GGAGGTGGAGTAGCAGGGGG+AGG + chr5_4:5298405-5298424 None:intergenic 70.0%
GCGGGAGGTGGAGTAGCAGG+GGG + chr5_4:5298408-5298427 None:intergenic 70.0%
GGAGGTGGAGTTGCGGGAGG+TGG + chr5_4:5298420-5298439 None:intergenic 70.0%
GCTGGAGGTGGAGTTGCGGG+AGG + chr5_4:5298423-5298442 None:intergenic 70.0%
GCCGGAGGAGGAGTTGCTGG+AGG + chr5_4:5298438-5298457 None:intergenic 70.0%
GCGGGAGCTGGAGTGGTTGC+TGG + chr5_4:5298489-5298508 None:intergenic 70.0%
AGCTTGGCAGGAGCGGGAGC+TGG + chr5_4:5298501-5298520 None:intergenic 70.0%
!! CCGGGAGCGGGAGCATCTGA+TGG + chr5_4:5298561-5298580 None:intergenic 70.0%
GGTGGAGGTGAGGCAGGGGG+TGG + chr5_4:5298375-5298394 None:intergenic 75.0%
GGCAGGAGCGGGAGCTGGAG+TGG + chr5_4:5298496-5298515 None:intergenic 75.0%
GGTGGAGGTGAGGCAGGGGG+TGG + chr5_4:5298375-5298394 None:intergenic 75.0%
GGCAGGAGCGGGAGCTGGAG+TGG + chr5_4:5298496-5298515 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5297667 5299550 5297667 ID=Msa0832250;Name=Msa0832250
chr5_4 mRNA 5297667 5299550 5297667 ID=Msa0832250-mRNA-1;Parent=Msa0832250;Name=Msa0832250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=351|1|1|1|1|1|2|361|229
chr5_4 exon 5297667 5298108 5297667 ID=Msa0832250-mRNA-1:exon:2267;Parent=Msa0832250-mRNA-1
chr5_4 exon 5298591 5299550 5298591 ID=Msa0832250-mRNA-1:exon:2266;Parent=Msa0832250-mRNA-1
chr5_4 five_prime_UTR 5299200 5299550 5299200 ID=Msa0832250-mRNA-1:five_prime_utr;Parent=Msa0832250-mRNA-1
chr5_4 CDS 5298591 5299199 5298591 ID=Msa0832250-mRNA-1:cds;Parent=Msa0832250-mRNA-1
chr5_4 CDS 5298028 5298108 5298028 ID=Msa0832250-mRNA-1:cds;Parent=Msa0832250-mRNA-1
chr5_4 three_prime_UTR 5297667 5298027 5297667 ID=Msa0832250-mRNA-1:three_prime_utr;Parent=Msa0832250-mRNA-1
Gene Sequence

>Msa0832250

ATGGGCACACATCATATAGTTTTGGTGGTTGGTTTGATCTGCGCTGTGTTTTCCAGCGTAGGAGCCCAACAAGCTCCATCCACCTCCCCAAACTCATCTCCAGCACCACCCACTCCTCCTGCTAATACACCTCCAACCACTCCTCAAGCCTCCCCTCCACCTGTTCAATCTTCTCCTCCACCCGTGCAGTCTTCTCCACCTCCAGTTCAGTCCTCCCCTCCACCAGCTCAGTCCACTCCCCCTCCCGTTCAGTCTTCTCCTCCACCTGTATCCGCTCCACCACCAGTTCAGCAATCTCCTCCTCCAACCCCACTCACTCCTCCACCTGTTCAGTCTACTCCACCACCTGCATCACCACCCCCTGCCTCACCTCCACCATTCTCTCCTCCCCCTGCTACTCCACCTCCCGCAACTCCACCTCCAGCAACTCCTCCTCCGGCACTCACACCTACTCCTCTCTCATCTCCTCCAGCAACCACTCCAGCTCCCGCTCCTGCCAAGCTTAAGAGTAAAGCCCCTACATTGGCACCTGTACTCTCGCCATCAGATGCTCCCGCTCCCGGACTCTCTTCTCTCTCCCCCTCTATCTCTCCATCTGGTACTGATGATAGTGGGGCAGAGAAGTTGTGGTCACATAAGATGATGGTTGGATTAGTATTTGGATGTGCTTTCCTGTCCTTGCTGTTCTAG
Protein sequence

>Msa0832250

MGTHHIVLVVGLICAVFSSVGAQQAPSTSPNSSPAPPTPPANTPPTTPQASPPPVQSSPPPVQSSPPPVQSSPPPAQSTPPPVQSSPPPVSAPPPVQQSPPPTPLTPPPVQSTPPPASPPPASPPPFSPPPATPPPATPPPATPPPALTPTPLSSPPATTPAPAPAKLKSKAPTLAPVLSPSDAPAPGLSSLSPSISPSGTDDSGAEKLWSHKMMVGLVFGCAFLSLLF*