AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711570 MtrunA17_Chr5g0399071 98.477 591 9 0 1 591 1 591 0.0 1199
Msa0711570 MtrunA17_Chr5g0399061 74.443 583 145 3 1 580 1 582 0.0 905
Msa0711570 MtrunA17_Chr4g0056431 71.717 594 164 4 1 591 1 593 0.0 859
Msa0711570 MtrunA17_Chr4g0063591 56.818 572 221 9 11 573 8 562 0.0 572
Msa0711570 MtrunA17_Chr5g0439381 50.624 561 250 5 15 570 18 556 0.0 526
Msa0711570 MtrunA17_Chr4g0005901 45.422 557 292 8 17 570 24 571 1.84e-169 494
Msa0711570 MtrunA17_Chr7g0241741 45.422 557 292 8 17 570 14 561 1.02e-165 484
Msa0711570 MtrunA17_Chr8g0375311 43.525 556 307 4 17 570 32 582 9.87e-164 479
Msa0711570 MtrunA17_Chr3g0104011 44.086 558 300 7 17 570 14 563 5.21e-161 472
Msa0711570 MtrunA17_Chr8g0375291 43.455 550 304 4 17 564 32 576 1.33e-159 469
Msa0711570 MtrunA17_Chr8g0375341 41.711 561 318 5 17 575 32 585 8.69e-158 464
Msa0711570 MtrunA17_Chr8g0375351 41.889 561 317 5 17 575 32 585 1.77e-155 458
Msa0711570 MtrunA17_Chr5g0422881 41.741 563 319 7 25 583 20 577 8.45e-154 454
Msa0711570 MtrunA17_Chr8g0375361 42.986 556 310 4 17 570 31 581 2.10e-152 451
Msa0711570 MtrunA17_Chr8g0375321 40.608 559 323 5 17 573 29 580 6.55e-149 441
Msa0711570 MtrunA17_Chr3g0142101 40.106 566 319 9 17 579 27 575 2.24e-148 440
Msa0711570 MtrunA17_Chr8g0375331 40.806 571 328 6 6 573 4 567 8.62e-147 436
Msa0711570 MtrunA17_Chr7g0261881 40.242 579 330 7 17 590 19 586 1.97e-145 433
Msa0711570 MtrunA17_Chr3g0142091 39.755 571 321 8 14 576 15 570 9.23e-144 428
Msa0711570 MtrunA17_Chr7g0255621 37.786 569 339 6 23 588 18 574 7.12e-142 424
Msa0711570 MtrunA17_Chr7g0261811 40.242 579 326 8 17 588 19 584 1.04e-140 421
Msa0711570 MtrunA17_Chr1g0187241 38.779 557 330 5 17 570 18 566 2.05e-134 404
Msa0711570 MtrunA17_Chr7g0217461 38.291 585 341 6 11 583 10 586 1.99e-132 399
Msa0711570 MtrunA17_Chr1g0166711 39.145 585 340 6 7 588 11 582 1.86e-131 397
Msa0711570 MtrunA17_Chr7g0214461 36.625 557 338 6 14 567 67 611 6.67e-130 394
Msa0711570 MtrunA17_Chr1g0166791 37.743 567 338 7 7 570 10 564 1.42e-129 392
Msa0711570 MtrunA17_Chr7g0255601 37.273 550 339 5 24 570 26 572 2.60e-129 392
Msa0711570 MtrunA17_Chr7g0261771 37.801 582 342 8 7 582 17 584 9.79e-129 390
Msa0711570 MtrunA17_Chr4g0054891 36.380 569 342 7 7 567 92 648 1.76e-128 392
Msa0711570 MtrunA17_Chr1g0166741 38.600 557 324 6 17 570 19 560 3.45e-128 388
Msa0711570 MtrunA17_Chr5g0400371 37.024 578 353 7 11 583 98 669 7.21e-128 390
Msa0711570 MtrunA17_Chr7g0255611 34.729 573 365 7 25 591 29 598 1.49e-127 387
Msa0711570 MtrunA17_Chr3g0133341 37.993 558 324 7 29 578 18 561 2.95e-127 385
Msa0711570 MtrunA17_Chr2g0276751 37.370 578 327 10 3 570 11 563 6.44e-127 385
Msa0711570 MtrunA17_Chr4g0008651 37.919 567 333 11 10 571 18 570 5.18e-126 383
Msa0711570 MtrunA17_Chr7g0240381 37.919 567 327 11 10 571 13 559 1.48e-125 381
Msa0711570 MtrunA17_Chr7g0261791 36.473 584 355 6 5 582 9 582 2.10e-125 382
Msa0711570 MtrunA17_Chr1g0166771 39.417 515 294 6 42 553 8 507 3.19e-125 379
Msa0711570 MtrunA17_Chr7g0218851 35.144 589 357 8 8 587 29 601 8.92e-125 380
Msa0711570 MtrunA17_Chr8g0362711 37.801 582 334 5 4 570 3 571 2.16e-124 378
Msa0711570 MtrunA17_Chr3g0112671 38.137 569 327 10 6 570 13 560 2.95e-124 378
Msa0711570 MtrunA17_Chr7g0261851 37.390 567 340 6 19 580 22 578 9.80e-124 377
Msa0711570 MtrunA17_Chr4g0014841 38.394 573 318 9 11 578 15 557 3.68e-123 374
Msa0711570 MtrunA17_Chr3g0112611 36.189 572 344 9 6 570 12 569 4.71e-123 375
Msa0711570 MtrunA17_Chr4g0014871 37.762 572 324 8 12 578 17 561 1.41e-122 373
Msa0711570 MtrunA17_Chr4g0014791 37.931 580 325 10 4 578 8 557 6.36e-122 371
Msa0711570 MtrunA17_Chr5g0415961 38.850 574 318 10 17 572 16 574 1.32e-120 369
Msa0711570 MtrunA17_Chr1g0213711 35.951 573 349 9 17 586 14 571 2.00e-120 368
Msa0711570 MtrunA17_Chr5g0415791 36.145 581 347 10 1 570 10 577 5.99e-120 368
Msa0711570 MtrunA17_Chr4g0014781 38.146 561 314 9 17 572 21 553 9.09e-120 365
Msa0711570 MtrunA17_Chr1g0193391 36.028 569 328 11 25 583 17 559 2.48e-119 366
Msa0711570 MtrunA17_Chr3g0114501 36.972 568 340 10 17 577 14 570 2.87e-119 365
Msa0711570 MtrunA17_Chr2g0284701 36.842 570 343 11 17 572 24 590 4.59e-119 365
Msa0711570 MtrunA17_Chr7g0271221 36.106 565 335 8 25 584 17 560 4.16e-118 362
Msa0711570 MtrunA17_Chr7g0214731 36.842 570 336 6 22 576 58 618 1.75e-117 362
Msa0711570 MtrunA17_Chr3g0077151 38.380 568 306 11 10 570 13 543 5.37e-117 358
Msa0711570 MtrunA17_Chr4g0014801 37.719 570 322 8 8 572 12 553 5.34e-116 356
Msa0711570 MtrunA17_Chr8g0379971 36.683 597 338 13 17 580 12 601 6.09e-115 355
Msa0711570 MtrunA17_Chr4g0059991 32.810 573 366 7 30 588 27 594 1.09e-114 354
Msa0711570 MtrunA17_Chr8g0353031 36.140 570 331 8 22 578 13 562 6.83e-113 348
Msa0711570 MtrunA17_Chr4g0059971 32.131 582 377 7 2 571 10 585 6.78e-109 339
Msa0711570 MtrunA17_Chr4g0059981 31.156 597 382 10 7 584 7 593 1.10e-108 338
Msa0711570 MtrunA17_Chr1g0166731 40.476 462 263 5 112 570 9 461 1.25e-108 334
Msa0711570 MtrunA17_Chr4g0011471 34.953 535 332 6 40 567 31 556 2.80e-107 334
Msa0711570 MtrunA17_Chr8g0379991 36.505 578 320 12 46 580 1 574 1.42e-106 332
Msa0711570 MtrunA17_Chr8g0362781 33.692 558 350 7 30 574 35 585 4.59e-106 331
Msa0711570 MtrunA17_Chr4g0069581 37.209 559 320 11 43 591 1 538 2.42e-105 328
Msa0711570 MtrunA17_Chr4g0011041 31.843 559 365 5 17 567 28 578 3.02e-105 329
Msa0711570 MtrunA17_Chr7g0261661 38.046 481 278 8 115 588 3 470 1.22e-103 322
Msa0711570 MtrunA17_Chr4g0014861 37.955 440 252 7 138 572 7 430 1.41e-97 304
Msa0711570 MtrunA17_Chr8g0362801 36.034 469 277 9 115 570 3 461 6.12e-95 299
Msa0711570 MtrunA17_Chr3g0082631 37.241 435 265 5 149 576 32 465 7.83e-94 296
Msa0711570 MtrunA17_Chr2g0331471 32.793 555 340 13 29 567 92 629 9.56e-94 302
Msa0711570 MtrunA17_Chr7g0261751 36.626 486 252 7 7 451 17 487 3.31e-93 296
Msa0711570 MtrunA17_Chr4g0003761 30.986 568 361 12 29 583 34 583 1.62e-92 296
Msa0711570 MtrunA17_Chr2g0331511 32.130 554 345 11 29 567 25 562 3.47e-91 293
Msa0711570 MtrunA17_Chr2g0331481 31.304 575 355 14 14 567 11 566 1.13e-90 292
Msa0711570 MtrunA17_Chr8g0390331 32.477 545 346 8 29 564 19 550 1.41e-89 288
Msa0711570 MtrunA17_Chr2g0331521 28.843 579 385 11 25 590 22 586 2.28e-89 288
Msa0711570 MtrunA17_Chr1g0157601 31.826 553 359 11 22 567 12 553 6.96e-89 286
Msa0711570 MtrunA17_Chr2g0325961 33.043 575 347 11 8 571 2 549 2.58e-88 284
Msa0711570 MtrunA17_Chr2g0325951 31.588 573 357 12 8 571 2 548 1.61e-87 281
Msa0711570 MtrunA17_Chr1g0157611 32.491 554 348 12 25 567 16 554 3.87e-84 273
Msa0711570 MtrunA17_Chr4g0060001 29.930 568 376 11 23 580 27 582 1.78e-80 265
Msa0711570 MtrunA17_Chr1g0147631 30.996 542 353 10 29 561 29 558 7.99e-80 263
Msa0711570 MtrunA17_Chr2g0331461 30.594 572 363 15 14 567 11 566 1.51e-79 263
Msa0711570 MtrunA17_Chr7g0240271 29.623 584 382 12 16 585 15 583 4.45e-79 261
Msa0711570 MtrunA17_Chr2g0326211 30.648 571 365 11 8 571 2 548 5.18e-79 259
Msa0711570 MtrunA17_Chr6g0451841 32.007 553 316 12 43 572 23 538 7.19e-79 259
Msa0711570 MtrunA17_Chr7g0261731 39.769 347 190 5 7 349 17 348 2.38e-77 249
Msa0711570 MtrunA17_Chr1g0157621 31.439 528 345 11 46 567 1 517 6.62e-76 251
Msa0711570 MtrunA17_Chr1g0177591 30.054 559 339 15 25 567 42 564 3.41e-75 250
Msa0711570 MtrunA17_Chr7g0240281 29.310 580 387 9 23 587 22 593 7.43e-75 249
Msa0711570 MtrunA17_Chr5g0415841 31.398 465 302 8 115 570 3 459 6.48e-74 243
Msa0711570 MtrunA17_Chr3g0142111 40.614 293 169 3 17 308 38 326 1.08e-73 239
Msa0711570 MtrunA17_Chr7g0235521 31.799 478 303 11 124 589 12 478 4.73e-67 226
Msa0711570 MtrunA17_Chr7g0240181 31.381 478 305 11 124 589 12 478 1.04e-65 222
Msa0711570 MtrunA17_Chr7g0240211 31.381 478 305 11 124 589 12 478 1.21e-65 222
Msa0711570 MtrunA17_Chr7g0240131 31.381 478 305 11 124 589 12 478 3.57e-65 221
Msa0711570 MtrunA17_Chr4g0060071 39.576 283 158 4 292 571 27 299 1.11e-63 211
Msa0711570 MtrunA17_Chr3g0112631 39.310 290 163 7 301 586 3 283 3.53e-61 204
Msa0711570 MtrunA17_Chr1g0177611 30.963 436 270 11 142 567 21 435 3.69e-61 209
Msa0711570 MtrunA17_Chr7g0240151 30.462 476 294 12 124 589 12 460 1.41e-60 208
Msa0711570 MtrunA17_Chr3g0142121 38.462 286 160 7 302 584 11 283 7.72e-59 198
Msa0711570 MtrunA17_Chr1g0177631 31.651 436 267 13 142 567 21 435 1.00e-55 194
Msa0711570 MtrunA17_Chr7g0234181 32.675 456 261 12 115 567 1 413 9.23e-54 188
Msa0711570 MtrunA17_Chr7g0234381 32.969 458 263 12 112 567 3 418 2.70e-53 187
Msa0711570 MtrunA17_Chr7g0234151 32.609 460 262 12 112 567 3 418 1.64e-52 185
Msa0711570 MtrunA17_Chr7g0261721 36.493 211 130 3 375 582 5 214 1.61e-39 144
Msa0711570 MtrunA17_Chr3g0112651 35.149 202 116 5 100 292 9 204 3.14e-31 120
Msa0711570 MtrunA17_Chr2g0326221 31.513 238 134 4 335 571 15 224 9.07e-30 117
Msa0711570 MtrunA17_Chr4g0060061 38.983 118 72 0 137 254 8 125 7.16e-25 100
Msa0711570 MtrunA17_Chr1g0147591 29.000 200 129 5 154 348 9 200 2.46e-21 92.4
Msa0711570 MtrunA17_Chr4g0060051 47.312 93 49 0 17 109 14 106 3.66e-19 84.0
Msa0711570 MtrunA17_Chr7g0261671 45.098 102 52 1 7 108 18 115 5.25e-19 83.2
Msa0711570 MtrunA17_Chr4g0014851 40.741 108 64 0 12 119 17 124 5.47e-18 81.6
Msa0711570 MtrunA17_Chr7g0261831 31.902 163 98 4 257 416 4 156 6.14e-18 82.8
Msa0711570 MtrunA17_Chr1g0166721 35.156 128 73 2 8 130 3 125 2.32e-17 79.3
Msa0711570 MtrunA17_Chr3g0112661 37.500 112 68 2 12 122 17 127 9.25e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711570 AT1G12110.1 62.735 585 210 5 3 583 2 582 0.0 738
Msa0711570 AT2G26690.1 55.950 563 227 6 11 567 8 555 0.0 590
Msa0711570 AT2G26690.2 55.140 535 219 6 39 567 3 522 0.0 551
Msa0711570 AT2G26690.3 54.857 525 216 6 49 567 1 510 0.0 537
Msa0711570 AT3G21670.1 51.510 563 247 6 14 570 16 558 0.0 532
Msa0711570 AT5G01180.2 42.729 557 308 6 17 570 15 563 3.25e-164 480
Msa0711570 AT5G01180.3 42.729 557 308 6 17 570 15 563 3.25e-164 480
Msa0711570 AT5G01180.1 42.729 557 308 6 17 570 15 563 3.25e-164 480
Msa0711570 AT3G54140.1 42.504 567 312 7 7 570 8 563 5.62e-162 475
Msa0711570 AT3G54140.2 42.504 567 312 7 7 570 8 563 5.62e-162 475
Msa0711570 AT2G02040.1 42.218 559 314 5 17 573 31 582 8.39e-158 464
Msa0711570 AT1G68570.1 42.557 571 314 8 7 570 5 568 1.90e-144 431
Msa0711570 AT1G68570.2 43.970 539 290 7 39 570 5 538 4.57e-143 426
Msa0711570 AT1G62200.1 38.938 565 329 6 6 565 30 583 7.07e-135 406
Msa0711570 AT1G62200.3 37.669 592 328 8 6 565 44 626 9.85e-131 397
Msa0711570 AT1G62200.2 37.669 592 328 8 6 565 30 612 1.11e-130 396
Msa0711570 AT1G59740.1 37.633 566 334 7 14 573 28 580 3.56e-130 394
Msa0711570 AT5G46040.1 37.063 572 344 8 17 583 17 577 1.29e-124 379
Msa0711570 AT5G46050.1 36.585 574 346 8 17 585 17 577 4.11e-124 378
Msa0711570 AT2G02020.1 36.813 546 301 6 17 561 32 534 6.66e-124 376
Msa0711570 AT2G37900.1 36.444 568 337 7 8 570 18 566 7.98e-124 377
Msa0711570 AT4G21680.1 37.943 564 330 6 17 569 18 572 1.88e-123 377
Msa0711570 AT3G53960.1 38.004 571 332 10 8 570 17 573 2.74e-123 377
Msa0711570 AT1G32450.1 36.380 558 345 7 17 567 27 581 5.60e-123 376
Msa0711570 AT1G69850.1 37.719 570 338 5 16 571 14 580 1.04e-122 374
Msa0711570 AT5G19640.1 37.201 543 317 7 28 567 60 581 7.97e-120 368
Msa0711570 AT1G33440.1 37.997 579 329 11 17 586 28 585 2.94e-119 366
Msa0711570 AT1G72140.1 36.458 576 319 8 9 573 16 555 8.31e-119 363
Msa0711570 AT3G54450.1 34.568 567 348 7 22 583 7 555 2.65e-118 362
Msa0711570 AT1G27040.2 38.959 557 325 7 16 569 12 556 3.70e-118 362
Msa0711570 AT1G27040.1 38.393 560 324 7 16 569 16 560 3.90e-118 362
Msa0711570 AT2G40460.1 38.028 568 328 10 7 570 8 555 1.22e-116 359
Msa0711570 AT5G13400.1 36.054 588 354 9 9 587 47 621 1.24e-116 360
Msa0711570 AT1G27040.3 39.286 532 308 7 41 569 9 528 6.95e-113 347
Msa0711570 AT1G69870.1 35.159 566 343 11 29 585 53 603 1.62e-112 349
Msa0711570 AT1G22540.1 38.640 559 312 8 17 570 20 552 3.20e-109 339
Msa0711570 AT5G62730.1 35.512 566 333 8 17 573 46 588 1.03e-108 338
Msa0711570 AT2G37900.2 36.016 497 295 6 79 571 11 488 1.05e-108 335
Msa0711570 AT1G72120.1 35.902 571 330 10 8 570 10 552 7.58e-107 333
Msa0711570 AT2G02020.2 34.982 546 290 9 17 561 32 513 2.47e-106 330
Msa0711570 AT1G22570.1 36.316 570 328 10 12 570 15 560 8.41e-106 330
Msa0711570 AT5G62730.2 35.455 550 323 8 33 573 3 529 9.75e-106 329
Msa0711570 AT1G72125.1 34.555 573 339 11 8 570 10 556 9.37e-105 327
Msa0711570 AT1G22550.1 34.851 571 336 9 11 570 14 559 1.09e-104 327
Msa0711570 AT1G72130.1 36.511 556 298 11 25 570 23 533 1.54e-103 323
Msa0711570 AT1G18880.1 31.532 555 358 8 30 571 22 567 5.19e-101 318
Msa0711570 AT5G46050.2 36.134 476 286 8 115 585 3 465 7.36e-98 306
Msa0711570 AT1G22570.2 36.029 544 313 10 38 570 4 523 3.11e-97 306
Msa0711570 AT1G52190.1 31.712 555 360 7 25 567 19 566 5.88e-97 308
Msa0711570 AT5G62680.1 32.500 560 346 11 30 570 46 592 5.44e-95 303
Msa0711570 AT3G47960.1 32.914 556 347 10 30 570 64 608 1.08e-94 303
Msa0711570 AT3G25260.1 33.394 554 317 11 17 567 11 515 2.30e-94 299
Msa0711570 AT3G16180.1 31.866 568 367 9 13 567 5 565 2.60e-94 301
Msa0711570 AT3G25280.1 33.874 555 321 12 16 567 10 521 1.96e-89 286
Msa0711570 AT3G45660.1 31.444 547 344 9 46 590 40 557 1.14e-88 285
Msa0711570 AT3G45660.3 31.444 547 344 9 46 590 40 557 1.14e-88 285
Msa0711570 AT3G45660.2 31.444 547 344 9 46 590 61 578 3.93e-88 285
Msa0711570 AT1G27080.1 32.000 575 356 12 21 585 8 557 4.56e-88 284
Msa0711570 AT3G45710.1 29.331 583 379 12 14 588 3 560 3.45e-83 271
Msa0711570 AT1G69860.1 30.965 549 353 10 30 571 21 550 8.50e-82 267
Msa0711570 AT3G45650.1 29.676 556 362 9 23 573 15 546 2.49e-81 266
Msa0711570 AT3G45680.1 29.277 567 368 10 26 587 19 557 1.82e-79 261
Msa0711570 AT1G72130.2 35.535 439 240 9 141 569 9 414 3.90e-79 256
Msa0711570 AT1G72130.3 35.535 439 240 9 141 569 9 414 3.90e-79 256
Msa0711570 AT5G14940.1 31.627 547 321 11 43 567 23 538 2.71e-78 258
Msa0711570 AT1G27080.2 32.342 538 329 12 58 585 3 515 1.43e-77 255
Msa0711570 AT3G45720.1 28.546 564 365 11 15 570 7 540 2.15e-77 256
Msa0711570 AT3G01350.1 30.900 589 346 11 24 583 4 560 8.50e-77 254
Msa0711570 AT5G28470.2 29.159 559 372 9 25 573 15 559 2.22e-76 253
Msa0711570 AT3G45650.2 28.351 582 362 10 23 573 15 572 2.71e-76 253
Msa0711570 AT3G45700.1 29.160 583 359 15 16 584 4 546 4.05e-75 249
Msa0711570 AT5G28470.1 28.980 559 371 10 25 573 15 557 2.32e-73 245
Msa0711570 AT3G45690.1 28.597 549 324 13 26 571 17 500 7.87e-68 229
Msa0711570 AT5G11570.1 26.816 537 304 10 37 567 23 476 4.67e-50 180
Msa0711570 AT2G38100.2 26.792 530 336 13 55 573 2 490 2.07e-43 162
Msa0711570 AT2G38100.1 26.792 530 336 13 55 573 18 506 4.21e-43 162
Msa0711570 AT2G38100.3 26.792 530 336 13 55 573 24 512 4.35e-43 162

Find 167 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGCAATCCATGGTTTATT+TGG 0.146472 5_1:+3452936 None:intergenic
CTCCTTTATGCTCTGTCTAT+TGG 0.183421 5_1:-3456606 Msa0711570:CDS
TTAGAGTCTTCTTTGCATTT+TGG 0.212251 5_1:+3456002 None:intergenic
ATGTGGCATCCTTTGCTTCT+TGG 0.223376 5_1:+3455518 None:intergenic
TCAGATTGCGGTCGTGTTTA+TGG 0.224116 5_1:-3455628 Msa0711570:CDS
ACTCGGCATCGCCGTTAATT+TGG 0.225881 5_1:-3456702 Msa0711570:CDS
TGAAGCTGTTTATTTGAAAA+AGG 0.227154 5_1:+3452501 None:intergenic
TCCTTTATGCTCTGTCTATT+GGG 0.231899 5_1:-3456605 Msa0711570:CDS
TGGAGAGGCCTTTATGTATA+TGG 0.257387 5_1:-3453093 Msa0711570:CDS
ATCCTTTGCTTCTTGGTCTT+AGG 0.272928 5_1:+3455525 None:intergenic
AATGTTGTTACTAATTTCTT+AGG 0.273061 5_1:-3456632 Msa0711570:CDS
CTTGACCGGTACTATGCATT+TGG 0.289091 5_1:-3456672 Msa0711570:CDS
ATGGATTGTCCAAAACATTA+TGG 0.311360 5_1:+3453478 None:intergenic
CATTATGGTTGTGGCCCATA+TGG 0.330752 5_1:+3453493 None:intergenic
TATAAATGTGGTGATATATT+TGG 0.333642 5_1:-3452856 Msa0711570:CDS
TTTCGTAAGCATAGGGTCTT+TGG 0.338269 5_1:-3455802 Msa0711570:CDS
AAATCTAGTGTCTCTGGCTT+TGG 0.347040 5_1:-3455897 Msa0711570:CDS
GGGCCACAACCATAATGTTT+TGG 0.348324 5_1:-3453487 Msa0711570:CDS
AGATGTGGAAGAAGTTAAAA+TGG 0.350382 5_1:-3453531 Msa0711570:CDS
TTGCTTGATCCGGTATTTGC+GGG 0.367014 5_1:+3455671 None:intergenic
AAGAAGTTAAAATGGTAATA+AGG 0.380191 5_1:-3453523 Msa0711570:CDS
TTCTTGAGCACACTCTCAAT+AGG 0.380892 5_1:-3453008 Msa0711570:CDS
AGATGCCATTGAGTGTGTTT+TGG 0.390364 5_1:-3453145 Msa0711570:CDS
TGCTGAGGCGGGCATAGAAT+TGG 0.392359 5_1:-3452796 Msa0711570:CDS
CCCTTGTAATCAGATGCATC+TGG 0.396538 5_1:+3456809 None:intergenic
CAAGGTAGAGGTTGGGGTTA+CGG 0.404173 5_1:-3455744 Msa0711570:CDS
AACTTCTTCCACATCTGTTA+AGG 0.406906 5_1:+3453538 None:intergenic
TCTTGAGCACACTCTCAATA+GGG 0.411173 5_1:-3453007 Msa0711570:CDS
TCCGCGGCCGCCATGATATT+AGG 0.415550 5_1:-3456752 Msa0711570:CDS
TAATAAGGATGTTACCCATA+TGG 0.419503 5_1:-3453508 Msa0711570:CDS
CTCAGTAGTGTCCATGGTTG+CGG 0.432988 5_1:-3453237 Msa0711570:CDS
CCCAGATGCATCTGATTACA+AGG 0.434717 5_1:-3456810 Msa0711570:CDS
CAATCACAATCAAGGAGAAA+TGG 0.435261 5_1:-3453571 Msa0711570:CDS
GTTTAATGGATATCTATTGA+TGG 0.439450 5_1:+3452523 None:intergenic
GAGATTATCTTACAATTGCT+TGG 0.439655 5_1:+3456343 None:intergenic
TTGACCGGTACTATGCATTT+GGG 0.441330 5_1:-3456671 Msa0711570:CDS
TCAATGACGGTCTTCTTAAT+CGG 0.441765 5_1:-3453377 Msa0711570:CDS
TGCCACATAGCAAACAGTTC+CGG 0.441974 5_1:-3455503 Msa0711570:intron
CTAGGGGAATTAAGTGAGTT+GGG 0.443425 5_1:+3456902 None:intergenic
GGTATGTGAAATGTGAAGCT+AGG 0.447060 5_1:+3456884 None:intergenic
TACATCACGGCCCTCGGCAC+CGG 0.448076 5_1:-3455927 Msa0711570:CDS
GCCTCTACATTCCATGCATA+GGG 0.450174 5_1:-3452762 Msa0711570:exon
TCCTAATATCATGGCGGCCG+CGG 0.451996 5_1:+3456751 None:intergenic
ACAAGGGCCGGCTGGCCGAC+AGG 0.455828 5_1:-3456793 Msa0711570:CDS
GGTCGTAGAAAGGAACAGTT+AGG 0.460679 5_1:+3453345 None:intergenic
TTTCCCTTGTGTTGTAGGGA+GGG 0.463914 5_1:+3456838 None:intergenic
AGCAGACAGCAAGCAACTAT+TGG 0.464045 5_1:-3455967 Msa0711570:CDS
AGATAACCAAGGTAGAGGTT+GGG 0.464346 5_1:-3455751 Msa0711570:CDS
AATTTGGTCACATACTTGAC+CGG 0.465748 5_1:-3456686 Msa0711570:CDS
GGAATGAAAACTATGAGTAC+AGG 0.465946 5_1:-3453035 Msa0711570:CDS
TAATTGTCCCATATACATAA+AGG 0.467859 5_1:+3453085 None:intergenic
CTCAATGGCATCTTTGCCGT+TGG 0.474314 5_1:+3453155 None:intergenic
TGCTTGGACAGCTGCAAAGA+TGG 0.474359 5_1:+3456359 None:intergenic
AAGACCGTCATTGATGCTGC+TGG 0.476879 5_1:+3453386 None:intergenic
TGTCCGGTACCCGCAAATAC+CGG 0.478280 5_1:-3455680 Msa0711570:CDS
CGCGGACCAACCACCGGTTG+TGG 0.478323 5_1:+3456769 None:intergenic
CACTTCTCCTCCTAATATCA+TGG 0.480052 5_1:+3456742 None:intergenic
GGTCTAAAATCTAGTGTCTC+TGG 0.480893 5_1:-3455903 Msa0711570:CDS
ACCCAATAGACAGAGCATAA+AGG 0.482538 5_1:+3456604 None:intergenic
TACCGGATCAAGCAACTTGT+TGG 0.482750 5_1:-3455663 Msa0711570:CDS
TTCTGATGACCAAGAAAAGA+AGG 0.483279 5_1:-3455856 Msa0711570:CDS
GCTAGGGGAATTAAGTGAGT+TGG 0.483496 5_1:+3456901 None:intergenic
TTGAAATTCGCACGATCACA+TGG 0.486954 5_1:-3453191 Msa0711570:CDS
CCTTTACAACGCATTGGTGT+TGG 0.489948 5_1:-3453269 Msa0711570:CDS
ATCTGATTACAAGGGCCGGC+TGG 0.490136 5_1:-3456801 Msa0711570:CDS
CGAATGAAGCGGTCGTAGAA+AGG 0.491283 5_1:+3453335 None:intergenic
AATAAGGATGTTACCCATAT+GGG 0.493344 5_1:-3453507 Msa0711570:CDS
GGAGAGGCCTTTATGTATAT+GGG 0.496953 5_1:-3453092 Msa0711570:CDS
AGTCCTCTCAGTAGTGTCCA+TGG 0.500956 5_1:-3453243 Msa0711570:CDS
TATTTGTGCGGTCGCAATTG+TGG 0.501020 5_1:-3455721 Msa0711570:CDS
TTGTGGACCTGTCGGCCAGC+CGG 0.501509 5_1:+3456786 None:intergenic
CAAGTATGTGACCAAATTAA+CGG 0.502223 5_1:+3456691 None:intergenic
TAGGAGGAGAAGTGATGGAG+AGG 0.502676 5_1:-3456733 Msa0711570:CDS
AAGATAACCAAGGTAGAGGT+TGG 0.503461 5_1:-3455752 Msa0711570:CDS
TTCACTCCTTTACAACGCAT+TGG 0.504068 5_1:-3453275 Msa0711570:CDS
TGTCCAAAACATTATGGTTG+TGG 0.504094 5_1:+3453484 None:intergenic
TTTATGCTCTGTCTATTGGG+TGG 0.509907 5_1:-3456602 Msa0711570:CDS
CGGTCGTGTTTATGGCTGCT+TGG 0.510720 5_1:-3455620 Msa0711570:CDS
TACCAACAAGTTGCTTGATC+CGG 0.510732 5_1:+3455661 None:intergenic
TCGTGTTTATGGCTGCTTGG+AGG 0.512042 5_1:-3455617 Msa0711570:CDS
ATATTTCAACAAACATTATG+TGG 0.512875 5_1:-3452584 Msa0711570:three_prime_UTR
TACCGGAACTGTTTGCTATG+TGG 0.513274 5_1:+3455501 None:intergenic
CCAACACCAATGCGTTGTAA+AGG 0.515233 5_1:+3453269 None:intergenic
GTATGTGAAATGTGAAGCTA+GGG 0.516552 5_1:+3456885 None:intergenic
ACCAACCAAAACACACTCAA+TGG 0.517641 5_1:+3453140 None:intergenic
GTTGCTTGATCCGGTATTTG+CGG 0.518244 5_1:+3455670 None:intergenic
TTCTTCATTGCTCTATGAAG+AGG 0.518830 5_1:-3455568 Msa0711570:CDS
AGTGAGTTGGGATGACATGA+AGG 0.519676 5_1:+3456914 None:intergenic
TTTCTTTGTTGGGTCTGGAG+AGG 0.523163 5_1:-3453108 Msa0711570:CDS
CTGGCCGACAGGTCCACAAC+CGG 0.525288 5_1:-3456782 Msa0711570:CDS
GCACTTTACATCACGGCCCT+CGG 0.525416 5_1:-3455933 Msa0711570:CDS
GACAAGAGACTTGCTGAGGC+GGG 0.533846 5_1:-3452807 Msa0711570:CDS
ATTGCGGATAATCTTGATCA+AGG 0.535890 5_1:-3452921 Msa0711570:CDS
GATAACCAAGGTAGAGGTTG+GGG 0.537914 5_1:-3455750 Msa0711570:CDS
TGGTCTTAGGTGTTTCACAT+AGG 0.541798 5_1:+3455538 None:intergenic
CCTTGTAATCAGATGCATCT+GGG 0.541992 5_1:+3456810 None:intergenic
GGCGGCCGCGGACCAACCAC+CGG 0.543833 5_1:+3456763 None:intergenic
ATCACGGCCCTCGGCACCGG+TGG 0.545009 5_1:-3455924 Msa0711570:CDS
ATTATGGTTGTGGCCCATAT+GGG 0.546937 5_1:+3453494 None:intergenic
CGTAACCCCAACCTCTACCT+TGG 0.549093 5_1:+3455745 None:intergenic
TGGCAGTGCAATCACAATCA+AGG 0.551937 5_1:-3453579 Msa0711570:CDS
GATCCGGTATTTGCGGGTAC+CGG 0.554792 5_1:+3455677 None:intergenic
TTAGACAAAGCGGCAATCAA+AGG 0.554882 5_1:-3453611 Msa0711570:CDS
GATATTAGGAGGAGAAGTGA+TGG 0.558978 5_1:-3456738 Msa0711570:CDS
TATGAGTGCTGCCGCAACCA+TGG 0.562291 5_1:+3453226 None:intergenic
CACCTAAGACCAAGAAGCAA+AGG 0.564356 5_1:-3455527 Msa0711570:CDS
TGCCTCTACATTCCATGCAT+AGG 0.564381 5_1:-3452763 Msa0711570:exon
ACAACCATGGATTGTCACAT+TGG 0.565357 5_1:-3453422 Msa0711570:CDS
AAGCATAGGGTCTTTGGCAG+CGG 0.567922 5_1:-3455796 Msa0711570:CDS
ATGCATCTGATTACAAGGGC+CGG 0.568601 5_1:-3456805 Msa0711570:CDS
AAAAGACAAAGACTCTACTA+GGG 0.570115 5_1:+3452685 None:intergenic
TGTTCCAATGTGACAATCCA+TGG 0.571949 5_1:+3453418 None:intergenic
ACGACCGCAATCTGAGTCAA+AGG 0.573004 5_1:+3455636 None:intergenic
TCCAAATAAACCATGGATTG+CGG 0.574971 5_1:-3452937 Msa0711570:CDS
GGACAAGAGACTTGCTGAGG+CGG 0.576506 5_1:-3452808 Msa0711570:CDS
TCAAGATTATCCGCAATCCA+TGG 0.577407 5_1:+3452927 None:intergenic
CACAACCGGTGGTTGGTCCG+CGG 0.578072 5_1:-3456768 Msa0711570:CDS
TAAGAAATTAGTAACAACAT+TGG 0.578419 5_1:+3456634 None:intergenic
GCAATCAAAGGCATAGAAAG+TGG 0.579246 5_1:-3453599 Msa0711570:CDS
TATCTCTACCTTAACAGATG+TGG 0.585721 5_1:-3453546 Msa0711570:CDS
ATTAGTAACAACATTGGCAG+AGG 0.586147 5_1:+3456640 None:intergenic
TTGCGACTGGTCGAATGAAG+CGG 0.586629 5_1:+3453324 None:intergenic
AGCACCCTCCCTACAACACA+AGG 0.588695 5_1:-3456842 Msa0711570:CDS
TAGTCCTTTGACTCAGATTG+CGG 0.589065 5_1:-3455640 Msa0711570:CDS
AGACCGTCATTGATGCTGCT+GGG 0.589637 5_1:+3453387 None:intergenic
TGCTAAGTGGTATGTGTACA+AGG 0.589791 5_1:-3452829 Msa0711570:CDS
ACAGGTCCACAACCGGTGGT+TGG 0.591605 5_1:-3456775 Msa0711570:CDS
AGAATGTTGTCATTTGAGCA+TGG 0.600950 5_1:+3453459 None:intergenic
ATGGAGAGGTTGACAACACT+CGG 0.600987 5_1:-3456719 Msa0711570:CDS
ATTGCCCAAATGCATAGTAC+CGG 0.603355 5_1:+3456667 None:intergenic
ATACAAGATAACCAAGGTAG+AGG 0.606582 5_1:-3455756 Msa0711570:CDS
ACCACCGGTTGTGGACCTGT+CGG 0.608628 5_1:+3456778 None:intergenic
TATATTTGGCTTGTGCTAAG+TGG 0.609309 5_1:-3452842 Msa0711570:CDS
GGGATGACATGAAGGGCTTG+TGG 0.613318 5_1:+3456922 None:intergenic
GTATTTAGCACTTTACATCA+CGG 0.617039 5_1:-3455940 Msa0711570:CDS
GTGAGTTGGGATGACATGAA+GGG 0.620522 5_1:+3456915 None:intergenic
TTGCGGATAATCTTGATCAA+GGG 0.620665 5_1:-3452920 Msa0711570:CDS
GACTCTAGTGAACAATGTGA+CGG 0.622141 5_1:-3452961 Msa0711570:CDS
ACTCTAGTGAACAATGTGAC+GGG 0.623386 5_1:-3452960 Msa0711570:CDS
TCTGATGACCAAGAAAAGAA+GGG 0.624905 5_1:-3455855 Msa0711570:CDS
CGGATAATCTTGATCAAGGG+AGG 0.625811 5_1:-3452917 Msa0711570:CDS
ATAGAGCAATGAAGAATCAG+AGG 0.625823 5_1:+3455575 None:intergenic
GCCGACAGGTCCACAACCGG+TGG 0.626538 5_1:-3456779 Msa0711570:CDS
CCTCTACATTCCATGCATAG+GGG 0.630402 5_1:-3452761 Msa0711570:exon
CAGCACTCATAGAAATGAAG+CGG 0.633945 5_1:-3453214 Msa0711570:CDS
CCCCTATGCATGGAATGTAG+AGG 0.633977 5_1:+3452761 None:intergenic
GAATGAAAACTATGAGTACA+GGG 0.638544 5_1:-3453034 Msa0711570:CDS
CTCATATTGCAAGATATGAG+AGG 0.641438 5_1:+3456863 None:intergenic
GACAGCTGCAAAGATGGCAA+TGG 0.645630 5_1:+3456365 None:intergenic
TAGAGCAATGAAGAATCAGA+GGG 0.646481 5_1:+3455576 None:intergenic
AATCCCAGCAGCATCAATGA+CGG 0.648376 5_1:-3453390 Msa0711570:CDS
TGACGGGTCCAAATAAACCA+TGG 0.653922 5_1:-3452944 Msa0711570:CDS
GCGGCCGCCATGATATTAGG+AGG 0.655145 5_1:-3456749 Msa0711570:CDS
TATGCTAAGTGCTATAAATG+TGG 0.657537 5_1:-3452868 Msa0711570:CDS
AAACAGTTTCTTAGACAAAG+CGG 0.657671 5_1:-3453621 Msa0711570:intron
AGTATCACAAGCAACAACCA+TGG 0.663164 5_1:-3453435 Msa0711570:CDS
TTGGGGTTACGGTATTTGTG+CGG 0.666939 5_1:-3455733 Msa0711570:CDS
CAATAGACAGAGCATAAAGG+AGG 0.685001 5_1:+3456607 None:intergenic
AAATTACTAAACAACTCACA+CGG 0.686574 5_1:-3453299 Msa0711570:CDS
TTCTCCTCCTAATATCATGG+CGG 0.687568 5_1:+3456745 None:intergenic
GGGTACCGGACAAGAAAACA+AGG 0.694489 5_1:+3455691 None:intergenic
CCAGATGCATCTGATTACAA+GGG 0.704068 5_1:-3456809 Msa0711570:CDS
CAAGGACAAGAGACTTGCTG+AGG 0.709240 5_1:-3452811 Msa0711570:CDS
CAACCATGGACACTACTGAG+AGG 0.733442 5_1:+3453240 None:intergenic
TATGTGAAATGTGAAGCTAG+GGG 0.736577 5_1:+3456886 None:intergenic
GCACCCTCCCTACAACACAA+GGG 0.747611 5_1:-3456841 Msa0711570:CDS
GTGTACATACAAGATAACCA+AGG 0.754045 5_1:-3455762 Msa0711570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTCATTTATTTATTTAT+TGG - chr5_1:3454136-3454155 Msa0711570:intron 10.0%
!! TTTATATAATAGTATAGTAT+TGG - chr5_1:3454871-3454890 Msa0711570:intron 10.0%
!!! AATTGCAAATTTTTTTAATA+AGG + chr5_1:3454947-3454966 None:intergenic 10.0%
!!! ATTAAAAAAATTTGCAATTT+TGG - chr5_1:3454948-3454967 Msa0711570:intron 10.0%
!!! TTTTGCAATTTTTTTTAATA+GGG - chr5_1:3455121-3455140 Msa0711570:intron 10.0%
!!! TTTTAAAAAGAAAATACAAA+TGG + chr5_1:3456744-3456763 None:intergenic 10.0%
!! AAAAAATTCCTTTCTTATTA+TGG - chr5_1:3452819-3452838 Msa0711570:CDS 15.0%
!!! TTTTATTTGAAAACAAAAGT+TGG - chr5_1:3454313-3454332 Msa0711570:intron 15.0%
!!! TAAACCTTTATAATTTGTTT+GGG + chr5_1:3454496-3454515 None:intergenic 15.0%
!! ATAAAGACATTTATCATTAT+TGG - chr5_1:3454658-3454677 Msa0711570:intron 15.0%
!! TAAAGACATTTATCATTATT+GGG - chr5_1:3454659-3454678 Msa0711570:intron 15.0%
!!! CTTTTGCAATTTTTTTTAAT+AGG - chr5_1:3455120-3455139 Msa0711570:intron 15.0%
!!! TTTGCAATTTTTTTTAATAG+GGG - chr5_1:3455122-3455141 Msa0711570:intron 15.0%
!! AATCTACTTAATATACTTTA+AGG + chr5_1:3455426-3455445 None:intergenic 15.0%
!!! TTTATTAATTTGTAATTCAG+TGG + chr5_1:3455551-3455570 None:intergenic 15.0%
!! AATTAATTCATTAATCTTCA+AGG + chr5_1:3455690-3455709 None:intergenic 15.0%
!! TTTATTTGAAAAAGGTTTAA+TGG + chr5_1:3456841-3456860 None:intergenic 15.0%
!! TAAGAAATTAGTAACAACAT+TGG + chr5_1:3452716-3452735 None:intergenic 20.0%
!! AATGTTGTTACTAATTTCTT+AGG - chr5_1:3452715-3452734 Msa0711570:three_prime_UTR 20.0%
!!! TTAGTTTTCCATAATAAGAA+AGG + chr5_1:3452830-3452849 None:intergenic 20.0%
!! AAAACCAATCATAATTAATG+TGG + chr5_1:3452892-3452911 None:intergenic 20.0%
!! AAAATAGTACTAGAAAACAA+TGG + chr5_1:3453050-3453069 None:intergenic 20.0%
!!! TTTTTGAGGATTTAATTCAA+AGG + chr5_1:3453222-3453241 None:intergenic 20.0%
!! AATATCAAAGAACTAAACAA+CGG + chr5_1:3453255-3453274 None:intergenic 20.0%
!! ACGAATGTATGTTTATATTA+GGG - chr5_1:3453276-3453295 Msa0711570:CDS 20.0%
!! AGAATGAATAGAAAATTTAC+CGG + chr5_1:3453866-3453885 None:intergenic 20.0%
!!! TTATAATTTGTTTGGGAATT+GGG + chr5_1:3454489-3454508 None:intergenic 20.0%
!!! TTTATAATTTGTTTGGGAAT+TGG + chr5_1:3454490-3454509 None:intergenic 20.0%
!! AATTCCCAAACAAATTATAA+AGG - chr5_1:3454489-3454508 Msa0711570:intron 20.0%
!!! CTAAACCTTTATAATTTGTT+TGG + chr5_1:3454497-3454516 None:intergenic 20.0%
!! ATGTAGAAAGAACAAATTAT+TGG - chr5_1:3454691-3454710 Msa0711570:intron 20.0%
!! TGTAGAAAGAACAAATTATT+GGG - chr5_1:3454692-3454711 Msa0711570:intron 20.0%
!!! GTAACATTTTAAAACTTAGA+GGG + chr5_1:3454914-3454933 None:intergenic 20.0%
!!! GTTTTAAAATGTTACGATTT+TGG - chr5_1:3454919-3454938 Msa0711570:intron 20.0%
!!! TTGCAATTTTTTTTAATAGG+GGG - chr5_1:3455123-3455142 Msa0711570:intron 20.0%
!! AAGTTTCAAAAATCTAACTA+AGG - chr5_1:3455319-3455338 Msa0711570:intron 20.0%
!! CATTAACTAAAAACAAAGAA+AGG + chr5_1:3455360-3455379 None:intergenic 20.0%
!! TATTAAGTAGATTGATTGAA+AGG - chr5_1:3455433-3455452 Msa0711570:intron 20.0%
!! ATTAAGTAGATTGATTGAAA+GGG - chr5_1:3455434-3455453 Msa0711570:intron 20.0%
!! AAGAAGTTAAAATGGTAATA+AGG - chr5_1:3455824-3455843 Msa0711570:CDS 20.0%
!! TATAAATGTGGTGATATATT+TGG - chr5_1:3456491-3456510 Msa0711570:intron 20.0%
!! ATATTTCAACAAACATTATG+TGG - chr5_1:3456763-3456782 Msa0711570:CDS 20.0%
!!! ATACTTTCTTTTGTTACATT+TGG + chr5_1:3456920-3456939 None:intergenic 20.0%
! TGATCCACATTAATTATGAT+TGG - chr5_1:3452885-3452904 Msa0711570:CDS 25.0%
! ATATCTGTCAAACAAAGAAT+GGG + chr5_1:3452958-3452977 None:intergenic 25.0%
!! ACGGTATGATTAAATTTTTG+AGG + chr5_1:3453236-3453255 None:intergenic 25.0%
! GACGAATGTATGTTTATATT+AGG - chr5_1:3453275-3453294 Msa0711570:CDS 25.0%
!!! GTATGATTAAATTTTTCAGC+TGG - chr5_1:3453514-3453533 Msa0711570:CDS 25.0%
!!! TTCTATTTTTTCGTAAGCAT+AGG - chr5_1:3453537-3453556 Msa0711570:CDS 25.0%
!!! TCTATTTTTTCGTAAGCATA+GGG - chr5_1:3453538-3453557 Msa0711570:CDS 25.0%
! ATTAAGCTACTTAAACTAAG+AGG + chr5_1:3454006-3454025 None:intergenic 25.0%
!! TGACATAGTTGATATATTTG+TGG - chr5_1:3454241-3454260 Msa0711570:intron 25.0%
! TGACTCAAAATTGAATAGTT+TGG - chr5_1:3454268-3454287 Msa0711570:intron 25.0%
!!! TATAATTTGTTTGGGAATTG+GGG + chr5_1:3454488-3454507 None:intergenic 25.0%
! TCTTTATTGTTAGTTGCATA+CGG + chr5_1:3454645-3454664 None:intergenic 25.0%
! ATAAACCACACATTATTAGT+TGG + chr5_1:3454829-3454848 None:intergenic 25.0%
! TTCTCTCAAAAAATAATGTG+TGG - chr5_1:3454848-3454867 Msa0711570:intron 25.0%
!!! CGTAACATTTTAAAACTTAG+AGG + chr5_1:3454915-3454934 None:intergenic 25.0%
! TTTACAAAAAGTTGCGATTA+TGG + chr5_1:3455026-3455045 None:intergenic 25.0%
! AGAACATATTTCTCTAAACA+TGG - chr5_1:3455091-3455110 Msa0711570:intron 25.0%
! GAACATATTTCTCTAAACAT+GGG - chr5_1:3455092-3455111 Msa0711570:intron 25.0%
! AACATATTTCTCTAAACATG+GGG - chr5_1:3455093-3455112 Msa0711570:intron 25.0%
!! GTTTCAAAATGTTGCAATTT+TGG + chr5_1:3455149-3455168 None:intergenic 25.0%
!!! ATTGCAACATTTTGAAACTT+AGG - chr5_1:3455151-3455170 Msa0711570:intron 25.0%
!!! TTGCAACATTTTGAAACTTA+GGG - chr5_1:3455152-3455171 Msa0711570:intron 25.0%
! GTAAAAGCAATAATTTCGAA+AGG + chr5_1:3455274-3455293 None:intergenic 25.0%
!!! TTTAGTAATTTTTTTGCGAC+TGG + chr5_1:3456039-3456058 None:intergenic 25.0%
! AAATTACTAAACAACTCACA+CGG - chr5_1:3456048-3456067 Msa0711570:CDS 25.0%
! TAATTGTCCCATATACATAA+AGG + chr5_1:3456265-3456284 None:intergenic 25.0%
!!! TTTTTAAGAGAATGTCCTAA+AGG - chr5_1:3456291-3456310 Msa0711570:intron 25.0%
!!! CTATGATTTTTATTGGCTAT+TGG - chr5_1:3456455-3456474 Msa0711570:intron 25.0%
!! AACAGAAGAAAAAAGTTGAT+TGG + chr5_1:3456619-3456638 None:intergenic 25.0%
!! GTCTTTTTATAAAGAGTGAT+TGG - chr5_1:3456678-3456697 Msa0711570:CDS 25.0%
!! GTTTAATGGATATCTATTGA+TGG + chr5_1:3456827-3456846 None:intergenic 25.0%
! TGAAGCTGTTTATTTGAAAA+AGG + chr5_1:3456849-3456868 None:intergenic 25.0%
CAAGTATGTGACCAAATTAA+CGG + chr5_1:3452659-3452678 None:intergenic 30.0%
! TTTCTTGCTGATACTTTTCT+AGG - chr5_1:3452769-3452788 Msa0711570:CDS 30.0%
GATATCTGTCAAACAAAGAA+TGG + chr5_1:3452959-3452978 None:intergenic 30.0%
GAGATTATCTTACAATTGCT+TGG + chr5_1:3453007-3453026 None:intergenic 30.0%
GTCAATCAATTATAATCGTC+AGG + chr5_1:3453171-3453190 None:intergenic 30.0%
! TTAGAGTCTTCTTTGCATTT+TGG + chr5_1:3453348-3453367 None:intergenic 30.0%
GTATTTAGCACTTTACATCA+CGG - chr5_1:3453407-3453426 Msa0711570:CDS 30.0%
! TAATCATACCCTTCTTTTCT+TGG + chr5_1:3453503-3453522 None:intergenic 30.0%
AAAGTTTCTCTTCCAATGAA+TGG - chr5_1:3454028-3454047 Msa0711570:intron 30.0%
ACTCAAATTGTTCCATTCAT+TGG + chr5_1:3454043-3454062 None:intergenic 30.0%
GTATAGACAATCTTCTCTAA+TGG + chr5_1:3454212-3454231 None:intergenic 30.0%
AAAGAAAAGAGAGGAGAAAA+TGG + chr5_1:3454462-3454481 None:intergenic 30.0%
GGAATATACTGTATATGTCA+AGG - chr5_1:3454550-3454569 Msa0711570:intron 30.0%
ATATACTGTATATGTCAAGG+AGG - chr5_1:3454553-3454572 Msa0711570:intron 30.0%
TATACTGTATATGTCAAGGA+GGG - chr5_1:3454554-3454573 Msa0711570:intron 30.0%
TTGTTCTTTCTACATCAAGT+GGG + chr5_1:3454686-3454705 None:intergenic 30.0%
TTTGTTCTTTCTACATCAAG+TGG + chr5_1:3454687-3454706 None:intergenic 30.0%
AAATGACAACTGGGTTATTA+AGG - chr5_1:3454741-3454760 Msa0711570:intron 30.0%
AGAAACCAACTAATAATGTG+TGG - chr5_1:3454821-3454840 Msa0711570:intron 30.0%
! CAACTTTTTGTAAAGATGTG+AGG - chr5_1:3455032-3455051 Msa0711570:intron 30.0%
! CATAAGGGAAATATGCTTTT+TGG + chr5_1:3455058-3455077 None:intergenic 30.0%
CATATTTCCCTTATGTTAGA+GGG - chr5_1:3455063-3455082 Msa0711570:intron 30.0%
ACATATTTCTCTAAACATGG+GGG - chr5_1:3455094-3455113 Msa0711570:intron 30.0%
CGATACGCAAAAAATACTAT+AGG + chr5_1:3455196-3455215 None:intergenic 30.0%
GATATCTTGCAAATCTCAAA+AGG + chr5_1:3455237-3455256 None:intergenic 30.0%
!!! AGGTAATTTTGATTGATGAG+AGG + chr5_1:3455406-3455425 None:intergenic 30.0%
TTGAAAGGGTCAATAAACTT+CGG - chr5_1:3455448-3455467 Msa0711570:intron 30.0%
TCTTCAAGGTAATAACAAAG+AGG + chr5_1:3455676-3455695 None:intergenic 30.0%
AAACAGTTTCTTAGACAAAG+CGG - chr5_1:3455726-3455745 Msa0711570:CDS 30.0%
AGATGTGGAAGAAGTTAAAA+TGG - chr5_1:3455816-3455835 Msa0711570:CDS 30.0%
TAATAAGGATGTTACCCATA+TGG - chr5_1:3455839-3455858 Msa0711570:CDS 30.0%
AATAAGGATGTTACCCATAT+GGG - chr5_1:3455840-3455859 Msa0711570:CDS 30.0%
! ATGGATTGTCCAAAACATTA+TGG + chr5_1:3455872-3455891 None:intergenic 30.0%
! TGCCACAATTTTTCTTTGTT+GGG - chr5_1:3456229-3456248 Msa0711570:intron 30.0%
! CTCATAGTTTTCATTCCTTT+AGG + chr5_1:3456309-3456328 None:intergenic 30.0%
GAATGAAAACTATGAGTACA+GGG - chr5_1:3456313-3456332 Msa0711570:intron 30.0%
TATGCTAAGTGCTATAAATG+TGG - chr5_1:3456479-3456498 Msa0711570:intron 30.0%
AAAAGACAAAGACTCTACTA+GGG + chr5_1:3456665-3456684 None:intergenic 30.0%
AAAAAGACAAAGACTCTACT+AGG + chr5_1:3456666-3456685 None:intergenic 30.0%
! CTTTCTTTTGTTACATTTGG+AGG + chr5_1:3456917-3456936 None:intergenic 30.0%
TATGTGAAATGTGAAGCTAG+GGG + chr5_1:3452464-3452483 None:intergenic 35.0%
GTATGTGAAATGTGAAGCTA+GGG + chr5_1:3452465-3452484 None:intergenic 35.0%
CTCATATTGCAAGATATGAG+AGG + chr5_1:3452487-3452506 None:intergenic 35.0%
AATTTGGTCACATACTTGAC+CGG - chr5_1:3452661-3452680 Msa0711570:three_prime_UTR 35.0%
ATTAGTAACAACATTGGCAG+AGG + chr5_1:3452710-3452729 None:intergenic 35.0%
TCCTTTATGCTCTGTCTATT+GGG - chr5_1:3452742-3452761 Msa0711570:three_prime_UTR 35.0%
!! TTGCTGATACTTTTCTAGGA+AGG - chr5_1:3452773-3452792 Msa0711570:CDS 35.0%
ATTAACTCTCAGAAATCACG+AGG + chr5_1:3452919-3452938 None:intergenic 35.0%
TTCTGATGACCAAGAAAAGA+AGG - chr5_1:3453491-3453510 Msa0711570:CDS 35.0%
TCTGATGACCAAGAAAAGAA+GGG - chr5_1:3453492-3453511 Msa0711570:CDS 35.0%
GTGTACATACAAGATAACCA+AGG - chr5_1:3453585-3453604 Msa0711570:CDS 35.0%
ATACAAGATAACCAAGGTAG+AGG - chr5_1:3453591-3453610 Msa0711570:CDS 35.0%
TAGAGCAATGAAGAATCAGA+GGG + chr5_1:3453774-3453793 None:intergenic 35.0%
ATAGAGCAATGAAGAATCAG+AGG + chr5_1:3453775-3453794 None:intergenic 35.0%
TTCTTCATTGCTCTATGAAG+AGG - chr5_1:3453779-3453798 Msa0711570:intron 35.0%
!! GACACTATGTTAACTTGCTA+TGG - chr5_1:3453962-3453981 Msa0711570:intron 35.0%
TTGCTATGGTTATGTCTTGT+TGG - chr5_1:3453976-3453995 Msa0711570:intron 35.0%
TGGTTTCCAATCATGAAGAT+CGG + chr5_1:3454192-3454211 None:intergenic 35.0%
AAAGAGAGGAGAAAATGGAA+GGG + chr5_1:3454457-3454476 None:intergenic 35.0%
AAAAGAGAGGAGAAAATGGA+AGG + chr5_1:3454458-3454477 None:intergenic 35.0%
ATACTGTATATGTCAAGGAG+GGG - chr5_1:3454555-3454574 Msa0711570:intron 35.0%
TGTTCTTTCTACATCAAGTG+GGG + chr5_1:3454685-3454704 None:intergenic 35.0%
! GGTGCCACATATTTAATAGT+GGG - chr5_1:3454713-3454732 Msa0711570:intron 35.0%
ATGGCCCACTATTAAATATG+TGG + chr5_1:3454720-3454739 None:intergenic 35.0%
! ATAACCCAGTTGTCATTTCA+TGG + chr5_1:3454739-3454758 None:intergenic 35.0%
GATCATTTGCTCCTTAATCA+TGG - chr5_1:3454763-3454782 Msa0711570:intron 35.0%
!!! TCAACAATTTTGGGACGAAA+GGG + chr5_1:3454975-3454994 None:intergenic 35.0%
GCATATTTCCCTTATGTTAG+AGG - chr5_1:3455062-3455081 Msa0711570:intron 35.0%
! CTTTTGACCCTCTAACATAA+GGG + chr5_1:3455073-3455092 None:intergenic 35.0%
! TCTTTTGACCCTCTAACATA+AGG + chr5_1:3455074-3455093 None:intergenic 35.0%
!!! GTATTTTTTGCGTATCGCTT+TGG - chr5_1:3455199-3455218 Msa0711570:intron 35.0%
! GTCAAAAAAGAAGTATGCCT+TGG - chr5_1:3455379-3455398 Msa0711570:intron 35.0%
ATATGCATATTGCTCCTCTT+TGG - chr5_1:3455627-3455646 Msa0711570:CDS 35.0%
CATATTAAGCAACACCAAAG+AGG + chr5_1:3455644-3455663 None:intergenic 35.0%
CAATCACAATCAAGGAGAAA+TGG - chr5_1:3455776-3455795 Msa0711570:CDS 35.0%
TATCTCTACCTTAACAGATG+TGG - chr5_1:3455801-3455820 Msa0711570:CDS 35.0%
AACTTCTTCCACATCTGTTA+AGG + chr5_1:3455812-3455831 None:intergenic 35.0%
TGTCCAAAACATTATGGTTG+TGG + chr5_1:3455866-3455885 None:intergenic 35.0%
! AGAATGTTGTCATTTGAGCA+TGG + chr5_1:3455891-3455910 None:intergenic 35.0%
TCAATGACGGTCTTCTTAAT+CGG - chr5_1:3455970-3455989 Msa0711570:CDS 35.0%
!!! TGGTTTTGTAAACGATCCAA+CGG - chr5_1:3456176-3456195 Msa0711570:intron 35.0%
! GTGCCACAATTTTTCTTTGT+TGG - chr5_1:3456228-3456247 Msa0711570:intron 35.0%
GACCCAACAAAGAAAAATTG+TGG + chr5_1:3456234-3456253 None:intergenic 35.0%
! CAATTTTTCTTTGTTGGGTC+TGG - chr5_1:3456234-3456253 Msa0711570:intron 35.0%
GGAATGAAAACTATGAGTAC+AGG - chr5_1:3456312-3456331 Msa0711570:intron 35.0%
! TCCAAATAAACCATGGATTG+CGG - chr5_1:3456410-3456429 Msa0711570:intron 35.0%
ATTGCGGATAATCTTGATCA+AGG - chr5_1:3456426-3456445 Msa0711570:intron 35.0%
TTGCGGATAATCTTGATCAA+GGG - chr5_1:3456427-3456446 Msa0711570:intron 35.0%
! GGAGGCTCTATGATTTTTAT+TGG - chr5_1:3456448-3456467 Msa0711570:intron 35.0%
!! TATATTTGGCTTGTGCTAAG+TGG - chr5_1:3456505-3456524 Msa0711570:intron 35.0%
CTAGGGGAATTAAGTGAGTT+GGG + chr5_1:3452448-3452467 None:intergenic 40.0%
GGTATGTGAAATGTGAAGCT+AGG + chr5_1:3452466-3452485 None:intergenic 40.0%
! CAGTTTTCCCTTGTGTTGTA+GGG + chr5_1:3452516-3452535 None:intergenic 40.0%
! ACAGTTTTCCCTTGTGTTGT+AGG + chr5_1:3452517-3452536 None:intergenic 40.0%
CCTTGTAATCAGATGCATCT+GGG + chr5_1:3452540-3452559 None:intergenic 40.0%
CCAGATGCATCTGATTACAA+GGG - chr5_1:3452538-3452557 Msa0711570:three_prime_UTR 40.0%
TTCTCCTCCTAATATCATGG+CGG + chr5_1:3452605-3452624 None:intergenic 40.0%
CACTTCTCCTCCTAATATCA+TGG + chr5_1:3452608-3452627 None:intergenic 40.0%
GATATTAGGAGGAGAAGTGA+TGG - chr5_1:3452609-3452628 Msa0711570:three_prime_UTR 40.0%
TTGACCGGTACTATGCATTT+GGG - chr5_1:3452676-3452695 Msa0711570:three_prime_UTR 40.0%
ATTGCCCAAATGCATAGTAC+CGG + chr5_1:3452683-3452702 None:intergenic 40.0%
CAATAGACAGAGCATAAAGG+AGG + chr5_1:3452743-3452762 None:intergenic 40.0%
CTCCTTTATGCTCTGTCTAT+TGG - chr5_1:3452741-3452760 Msa0711570:three_prime_UTR 40.0%
ACCCAATAGACAGAGCATAA+AGG + chr5_1:3452746-3452765 None:intergenic 40.0%
TTTATGCTCTGTCTATTGGG+TGG - chr5_1:3452745-3452764 Msa0711570:exon 40.0%
!! CTTTGCATTTTGGTGGATGT+AGG + chr5_1:3453338-3453357 None:intergenic 40.0%
! GAGTCTTCTTTGCATTTTGG+TGG + chr5_1:3453345-3453364 None:intergenic 40.0%
! GACACTAGATTTTAGACCAC+CGG + chr5_1:3453442-3453461 None:intergenic 40.0%
! GGTCTAAAATCTAGTGTCTC+TGG - chr5_1:3453444-3453463 Msa0711570:CDS 40.0%
! AAATCTAGTGTCTCTGGCTT+TGG - chr5_1:3453450-3453469 Msa0711570:CDS 40.0%
TTTCGTAAGCATAGGGTCTT+TGG - chr5_1:3453545-3453564 Msa0711570:CDS 40.0%
AAGATAACCAAGGTAGAGGT+TGG - chr5_1:3453595-3453614 Msa0711570:CDS 40.0%
AGATAACCAAGGTAGAGGTT+GGG - chr5_1:3453596-3453615 Msa0711570:CDS 40.0%
TACCAACAAGTTGCTTGATC+CGG + chr5_1:3453689-3453708 None:intergenic 40.0%
TAGTCCTTTGACTCAGATTG+CGG - chr5_1:3453707-3453726 Msa0711570:intron 40.0%
! TGGTCTTAGGTGTTTCACAT+AGG + chr5_1:3453812-3453831 None:intergenic 40.0%
! ATCCTTTGCTTCTTGGTCTT+AGG + chr5_1:3453825-3453844 None:intergenic 40.0%
TCAATCCCGATCTTCATGAT+TGG - chr5_1:3454183-3454202 Msa0711570:intron 40.0%
GGTTTCCAATCATGAAGATC+GGG + chr5_1:3454191-3454210 None:intergenic 40.0%
AAGGTAAGAGAAGGAAAAGG+TGG + chr5_1:3454429-3454448 None:intergenic 40.0%
TTGGGGAGTAAAGAAAAGAG+AGG + chr5_1:3454471-3454490 None:intergenic 40.0%
GTCAACACAAAGTGATAGAG+TGG - chr5_1:3454529-3454548 Msa0711570:intron 40.0%
AATGAAACTCCCATGCATCT+TGG + chr5_1:3454602-3454621 None:intergenic 40.0%
! GGGTGCCACATATTTAATAG+TGG - chr5_1:3454712-3454731 Msa0711570:intron 40.0%
TGGACTTGTCACCATGATTA+AGG + chr5_1:3454777-3454796 None:intergenic 40.0%
TTAACTATTAAGCTCGTGCG+TGG + chr5_1:3454797-3454816 None:intergenic 40.0%
!!! CAACAATTTTGGGACGAAAG+GGG + chr5_1:3454974-3454993 None:intergenic 40.0%
!!! CTCAACAATTTTGGGACGAA+AGG + chr5_1:3454976-3454995 None:intergenic 40.0%
! GGCGTCTTCTCAACAATTTT+GGG + chr5_1:3454984-3455003 None:intergenic 40.0%
! TGGCGTCTTCTCAACAATTT+TGG + chr5_1:3454985-3455004 None:intergenic 40.0%
!!! GCGATTATGGTCCCTTTTTT+GGG + chr5_1:3455013-3455032 None:intergenic 40.0%
!!! TGCGATTATGGTCCCTTTTT+TGG + chr5_1:3455014-3455033 None:intergenic 40.0%
TCGAAAGGAGATAGACTAGA+TGG + chr5_1:3455259-3455278 None:intergenic 40.0%
TTTGATTGATGAGAGGTCCA+AGG + chr5_1:3455399-3455418 None:intergenic 40.0%
TTAGACAAAGCGGCAATCAA+AGG - chr5_1:3455736-3455755 Msa0711570:CDS 40.0%
! GCAATCAAAGGCATAGAAAG+TGG - chr5_1:3455748-3455767 Msa0711570:CDS 40.0%
ATTATGGTTGTGGCCCATAT+GGG + chr5_1:3455856-3455875 None:intergenic 40.0%
AGTATCACAAGCAACAACCA+TGG - chr5_1:3455912-3455931 Msa0711570:CDS 40.0%
! ACAACCATGGATTGTCACAT+TGG - chr5_1:3455925-3455944 Msa0711570:CDS 40.0%
TGTTCCAATGTGACAATCCA+TGG + chr5_1:3455932-3455951 None:intergenic 40.0%
TTCACTCCTTTACAACGCAT+TGG - chr5_1:3456072-3456091 Msa0711570:intron 40.0%
CAGCACTCATAGAAATGAAG+CGG - chr5_1:3456133-3456152 Msa0711570:intron 40.0%
TTGAAATTCGCACGATCACA+TGG - chr5_1:3456156-3456175 Msa0711570:intron 40.0%
! AGATGCCATTGAGTGTGTTT+TGG - chr5_1:3456202-3456221 Msa0711570:intron 40.0%
ACCAACCAAAACACACTCAA+TGG + chr5_1:3456210-3456229 None:intergenic 40.0%
TGGAGAGGCCTTTATGTATA+TGG - chr5_1:3456254-3456273 Msa0711570:intron 40.0%
GGAGAGGCCTTTATGTATAT+GGG - chr5_1:3456255-3456274 Msa0711570:intron 40.0%
TTCTTGAGCACACTCTCAAT+AGG - chr5_1:3456339-3456358 Msa0711570:intron 40.0%
TCTTGAGCACACTCTCAATA+GGG - chr5_1:3456340-3456359 Msa0711570:intron 40.0%
GACTCTAGTGAACAATGTGA+CGG - chr5_1:3456386-3456405 Msa0711570:intron 40.0%
ACTCTAGTGAACAATGTGAC+GGG - chr5_1:3456387-3456406 Msa0711570:intron 40.0%
TCCGCAATCCATGGTTTATT+TGG + chr5_1:3456414-3456433 None:intergenic 40.0%
TCAAGATTATCCGCAATCCA+TGG + chr5_1:3456423-3456442 None:intergenic 40.0%
TGCTAAGTGGTATGTGTACA+AGG - chr5_1:3456518-3456537 Msa0711570:intron 40.0%
! GTGAGTTGGGATGACATGAA+GGG + chr5_1:3452435-3452454 None:intergenic 45.0%
! AGTGAGTTGGGATGACATGA+AGG + chr5_1:3452436-3452455 None:intergenic 45.0%
GCTAGGGGAATTAAGTGAGT+TGG + chr5_1:3452449-3452468 None:intergenic 45.0%
TTTCCCTTGTGTTGTAGGGA+GGG + chr5_1:3452512-3452531 None:intergenic 45.0%
! TTTTCCCTTGTGTTGTAGGG+AGG + chr5_1:3452513-3452532 None:intergenic 45.0%
CCCAGATGCATCTGATTACA+AGG - chr5_1:3452537-3452556 Msa0711570:three_prime_UTR 45.0%
CCCTTGTAATCAGATGCATC+TGG + chr5_1:3452541-3452560 None:intergenic 45.0%
ATGCATCTGATTACAAGGGC+CGG - chr5_1:3452542-3452561 Msa0711570:three_prime_UTR 45.0%
ATGGAGAGGTTGACAACACT+CGG - chr5_1:3452628-3452647 Msa0711570:three_prime_UTR 45.0%
CTTGACCGGTACTATGCATT+TGG - chr5_1:3452675-3452694 Msa0711570:three_prime_UTR 45.0%
!! CATTTTGGTGGATGTAGGCT+TGG + chr5_1:3453333-3453352 None:intergenic 45.0%
AGCAGACAGCAAGCAACTAT+TGG - chr5_1:3453380-3453399 Msa0711570:CDS 45.0%
GATAACCAAGGTAGAGGTTG+GGG - chr5_1:3453597-3453616 Msa0711570:CDS 45.0%
TTGGGGTTACGGTATTTGTG+CGG - chr5_1:3453614-3453633 Msa0711570:CDS 45.0%
TATTTGTGCGGTCGCAATTG+TGG - chr5_1:3453626-3453645 Msa0711570:intron 45.0%
TTGCTTGATCCGGTATTTGC+GGG + chr5_1:3453679-3453698 None:intergenic 45.0%
GTTGCTTGATCCGGTATTTG+CGG + chr5_1:3453680-3453699 None:intergenic 45.0%
TACCGGATCAAGCAACTTGT+TGG - chr5_1:3453684-3453703 Msa0711570:intron 45.0%
TCAGATTGCGGTCGTGTTTA+TGG - chr5_1:3453719-3453738 Msa0711570:intron 45.0%
CACCTAAGACCAAGAAGCAA+AGG - chr5_1:3453820-3453839 Msa0711570:intron 45.0%
ATGTGGCATCCTTTGCTTCT+TGG + chr5_1:3453832-3453851 None:intergenic 45.0%
TGCCACATAGCAAACAGTTC+CGG - chr5_1:3453844-3453863 Msa0711570:intron 45.0%
!! TACCGGAACTGTTTGCTATG+TGG + chr5_1:3453849-3453868 None:intergenic 45.0%
GGGAAGGTAAGAGAAGGAAA+AGG + chr5_1:3454432-3454451 None:intergenic 45.0%
AGAAAATGGAAGGGATGGGA+AGG + chr5_1:3454448-3454467 None:intergenic 45.0%
GAGGAGAAAATGGAAGGGAT+GGG + chr5_1:3454452-3454471 None:intergenic 45.0%
AGAGGAGAAAATGGAAGGGA+TGG + chr5_1:3454453-3454472 None:intergenic 45.0%
GGCAGGATCAACATCGAATA+GGG + chr5_1:3454581-3454600 None:intergenic 45.0%
TGGCAGGATCAACATCGAAT+AGG + chr5_1:3454582-3454601 None:intergenic 45.0%
TTGATCCTGCCAAGATGCAT+GGG - chr5_1:3454590-3454609 Msa0711570:intron 45.0%
AGTTGCATACGGCTCTCAAT+TGG + chr5_1:3454634-3454653 None:intergenic 45.0%
TGGGCCATGAAATGACAACT+GGG - chr5_1:3454732-3454751 Msa0711570:intron 45.0%
TGGCAGTGCAATCACAATCA+AGG - chr5_1:3455768-3455787 Msa0711570:CDS 45.0%
CATTATGGTTGTGGCCCATA+TGG + chr5_1:3455857-3455876 None:intergenic 45.0%
! GGGCCACAACCATAATGTTT+TGG - chr5_1:3455860-3455879 Msa0711570:CDS 45.0%
AATCCCAGCAGCATCAATGA+CGG - chr5_1:3455957-3455976 Msa0711570:CDS 45.0%
GGTCGTAGAAAGGAACAGTT+AGG + chr5_1:3456005-3456024 None:intergenic 45.0%
CCAACACCAATGCGTTGTAA+AGG + chr5_1:3456081-3456100 None:intergenic 45.0%
! CCTTTACAACGCATTGGTGT+TGG - chr5_1:3456078-3456097 Msa0711570:intron 45.0%
!!! GCCATTGAGTGTGTTTTGGT+TGG - chr5_1:3456206-3456225 Msa0711570:intron 45.0%
TTTCTTTGTTGGGTCTGGAG+AGG - chr5_1:3456239-3456258 Msa0711570:intron 45.0%
! TGACGGGTCCAAATAAACCA+TGG - chr5_1:3456403-3456422 Msa0711570:intron 45.0%
CGGATAATCTTGATCAAGGG+AGG - chr5_1:3456430-3456449 Msa0711570:intron 45.0%
TGCCTCTACATTCCATGCAT+AGG - chr5_1:3456584-3456603 Msa0711570:CDS 45.0%
GCCTCTACATTCCATGCATA+GGG - chr5_1:3456585-3456604 Msa0711570:CDS 45.0%
CCTCTACATTCCATGCATAG+GGG - chr5_1:3456586-3456605 Msa0711570:CDS 45.0%
TGGTGAAAAACCCCTATGCA+TGG + chr5_1:3456599-3456618 None:intergenic 45.0%
!!! TTTTTAACATAATATAATTT+CGG - chr5_1:3454392-3454411 Msa0711570:intron 5.0%
! TAGGAGGAGAAGTGATGGAG+AGG - chr5_1:3452614-3452633 Msa0711570:three_prime_UTR 50.0%
ACTCGGCATCGCCGTTAATT+TGG - chr5_1:3452645-3452664 Msa0711570:three_prime_UTR 50.0%
GACAGCTGCAAAGATGGCAA+TGG + chr5_1:3452985-3453004 None:intergenic 50.0%
TGCTTGGACAGCTGCAAAGA+TGG + chr5_1:3452991-3453010 None:intergenic 50.0%
AAGCATAGGGTCTTTGGCAG+CGG - chr5_1:3453551-3453570 Msa0711570:CDS 50.0%
CAAGGTAGAGGTTGGGGTTA+CGG - chr5_1:3453603-3453622 Msa0711570:CDS 50.0%
!!! GCGCTCCTTGTTTTCTTGTC+CGG - chr5_1:3453651-3453670 Msa0711570:intron 50.0%
!! GGGTACCGGACAAGAAAACA+AGG + chr5_1:3453659-3453678 None:intergenic 50.0%
ACGACCGCAATCTGAGTCAA+AGG + chr5_1:3453714-3453733 None:intergenic 50.0%
TCGTGTTTATGGCTGCTTGG+AGG - chr5_1:3453730-3453749 Msa0711570:intron 50.0%
AGGGATGGGAAGGTAAGAGA+AGG + chr5_1:3454438-3454457 None:intergenic 50.0%
GTTGATCCTGCCAAGATGCA+TGG - chr5_1:3454589-3454608 Msa0711570:intron 50.0%
AAACTCCCATGCATCTTGGC+AGG + chr5_1:3454598-3454617 None:intergenic 50.0%
GTGGGCCATGAAATGACAAC+TGG - chr5_1:3454731-3454750 Msa0711570:intron 50.0%
ACGCCACGTGTCCCAAAAAA+GGG - chr5_1:3454999-3455018 Msa0711570:intron 50.0%
AGACCGTCATTGATGCTGCT+GGG + chr5_1:3455963-3455982 None:intergenic 50.0%
AAGACCGTCATTGATGCTGC+TGG + chr5_1:3455964-3455983 None:intergenic 50.0%
CGAATGAAGCGGTCGTAGAA+AGG + chr5_1:3456015-3456034 None:intergenic 50.0%
! TTGCGACTGGTCGAATGAAG+CGG + chr5_1:3456026-3456045 None:intergenic 50.0%
AGTCCTCTCAGTAGTGTCCA+TGG - chr5_1:3456104-3456123 Msa0711570:intron 50.0%
CAACCATGGACACTACTGAG+AGG + chr5_1:3456110-3456129 None:intergenic 50.0%
CTCAGTAGTGTCCATGGTTG+CGG - chr5_1:3456110-3456129 Msa0711570:intron 50.0%
CTCAATGGCATCTTTGCCGT+TGG + chr5_1:3456195-3456214 None:intergenic 50.0%
!! CAAGGACAAGAGACTTGCTG+AGG - chr5_1:3456536-3456555 Msa0711570:intron 50.0%
CCCCTATGCATGGAATGTAG+AGG + chr5_1:3456589-3456608 None:intergenic 50.0%
GGGATGACATGAAGGGCTTG+TGG + chr5_1:3452428-3452447 None:intergenic 55.0%
AGCACCCTCCCTACAACACA+AGG - chr5_1:3452505-3452524 Msa0711570:three_prime_UTR 55.0%
GCACCCTCCCTACAACACAA+GGG - chr5_1:3452506-3452525 Msa0711570:three_prime_UTR 55.0%
ATCTGATTACAAGGGCCGGC+TGG - chr5_1:3452546-3452565 Msa0711570:three_prime_UTR 55.0%
TCCTAATATCATGGCGGCCG+CGG + chr5_1:3452599-3452618 None:intergenic 55.0%
GCACTTTACATCACGGCCCT+CGG - chr5_1:3453414-3453433 Msa0711570:CDS 55.0%
!! TTTTAGACCACCGGTGCCGA+GGG + chr5_1:3453433-3453452 None:intergenic 55.0%
!! ATTTTAGACCACCGGTGCCG+AGG + chr5_1:3453434-3453453 None:intergenic 55.0%
CGTAACCCCAACCTCTACCT+TGG + chr5_1:3453605-3453624 None:intergenic 55.0%
TGTCCGGTACCCGCAAATAC+CGG - chr5_1:3453667-3453686 Msa0711570:intron 55.0%
GATCCGGTATTTGCGGGTAC+CGG + chr5_1:3453673-3453692 None:intergenic 55.0%
CGGTCGTGTTTATGGCTGCT+TGG - chr5_1:3453727-3453746 Msa0711570:intron 55.0%
GACGCCACGTGTCCCAAAAA+AGG - chr5_1:3454998-3455017 Msa0711570:intron 55.0%
!!! GGTCCCTTTTTTGGGACACG+TGG + chr5_1:3455005-3455024 None:intergenic 55.0%
! TATGAGTGCTGCCGCAACCA+TGG + chr5_1:3456124-3456143 None:intergenic 55.0%
!! GGACAAGAGACTTGCTGAGG+CGG - chr5_1:3456539-3456558 Msa0711570:intron 55.0%
!! GACAAGAGACTTGCTGAGGC+GGG - chr5_1:3456540-3456559 Msa0711570:intron 55.0%
TGCTGAGGCGGGCATAGAAT+TGG - chr5_1:3456551-3456570 Msa0711570:intron 55.0%
! ACCACCGGTTGTGGACCTGT+CGG + chr5_1:3452572-3452591 None:intergenic 60.0%
ACAGGTCCACAACCGGTGGT+TGG - chr5_1:3452572-3452591 Msa0711570:three_prime_UTR 60.0%
TCCGCGGCCGCCATGATATT+AGG - chr5_1:3452595-3452614 Msa0711570:three_prime_UTR 60.0%
GCGGCCGCCATGATATTAGG+AGG - chr5_1:3452598-3452617 Msa0711570:three_prime_UTR 60.0%
TTGTGGACCTGTCGGCCAGC+CGG + chr5_1:3452564-3452583 None:intergenic 65.0%
CTGGCCGACAGGTCCACAAC+CGG - chr5_1:3452565-3452584 Msa0711570:three_prime_UTR 65.0%
! CACAACCGGTGGTTGGTCCG+CGG - chr5_1:3452579-3452598 Msa0711570:three_prime_UTR 65.0%
TACATCACGGCCCTCGGCAC+CGG - chr5_1:3453420-3453439 Msa0711570:CDS 65.0%
GCCGACAGGTCCACAACCGG+TGG - chr5_1:3452568-3452587 Msa0711570:three_prime_UTR 70.0%
! CGCGGACCAACCACCGGTTG+TGG + chr5_1:3452581-3452600 None:intergenic 70.0%
! ACAAGGGCCGGCTGGCCGAC+AGG - chr5_1:3452554-3452573 Msa0711570:three_prime_UTR 75.0%
! ATCACGGCCCTCGGCACCGG+TGG - chr5_1:3453423-3453442 Msa0711570:CDS 75.0%
! GGCGGCCGCGGACCAACCAC+CGG + chr5_1:3452587-3452606 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3452425 3456944 3452425 ID=Msa0711570;Name=Msa0711570
chr5_1 mRNA 3452425 3456944 3452425 ID=Msa0711570-mRNA-1;Parent=Msa0711570;Name=Msa0711570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=77|1|1|1|1|1|4|339|591
chr5_1 exon 3452425 3453637 3452425 ID=Msa0711570-mRNA-1:exon:1286;Parent=Msa0711570-mRNA-1
chr5_1 exon 3455504 3456072 3455504 ID=Msa0711570-mRNA-1:exon:1285;Parent=Msa0711570-mRNA-1
chr5_1 exon 3456356 3456395 3456356 ID=Msa0711570-mRNA-1:exon:1284;Parent=Msa0711570-mRNA-1
chr5_1 exon 3456575 3456944 3456575 ID=Msa0711570-mRNA-1:exon:1283;Parent=Msa0711570-mRNA-1
chr5_1 five_prime_UTR 3456868 3456944 3456868 ID=Msa0711570-mRNA-1:five_prime_utr;Parent=Msa0711570-mRNA-1
chr5_1 CDS 3456575 3456867 3456575 ID=Msa0711570-mRNA-1:cds;Parent=Msa0711570-mRNA-1
chr5_1 CDS 3456356 3456395 3456356 ID=Msa0711570-mRNA-1:cds;Parent=Msa0711570-mRNA-1
chr5_1 CDS 3455504 3456072 3455504 ID=Msa0711570-mRNA-1:cds;Parent=Msa0711570-mRNA-1
chr5_1 CDS 3452764 3453637 3452764 ID=Msa0711570-mRNA-1:cds;Parent=Msa0711570-mRNA-1
chr5_1 three_prime_UTR 3452425 3452763 3452425 ID=Msa0711570-mRNA-1:three_prime_utr;Parent=Msa0711570-mRNA-1
Gene Sequence

>Msa0711570

ATGAGCACCCTCCCTACAACACAAGGGAAAACTGTCCCAGATGCATCTGATTACAAGGGCCGGCTGGCCGACAGGTCCACAACCGGTGGTTGGTCCGCGGCCGCCATGATATTAGGAGGAGAAGTGATGGAGAGGTTGACAACACTCGGCATCGCCGTTAATTTGGTCACATACTTGACCGGTACTATGCATTTGGGCAATGCTGCCTCTGCCAATGTTGTTACTAATTTCTTAGGAACCTCCTTTATGCTCTGTCTATTGGGTGGATTTCTTGCTGATACTTTTCTAGGAAGATATCTCACCATTGCCATCTTTGCAGCTGTCCAAGCAATTGGTGTAACAATATTGACGATATCAACTATAATTCCAAGCCTACATCCACCAAAATGCAAAGAAGACTCTAAATCTTGCATACAAGCAGACAGCAAGCAACTATTGGTGATGTATTTAGCACTTTACATCACGGCCCTCGGCACCGGTGGTCTAAAATCTAGTGTCTCTGGCTTTGGTTCTGATCAATTTGATGATTCTGATGACCAAGAAAAGAAGGGTATGATTAAATTTTTCAGCTGGTTCTATTTTTTCGTAAGCATAGGGTCTTTGGCAGCGGTGACTGTTCTTGTGTACATACAAGATAACCAAGGTAGAGGTTGGGGTTACGGTATTTGTGCGGTCGCAATTGTGGTTGCGCTCCTTGTTTTCTTGTCCGGTACCCGCAAATACCGGATCAAGCAACTTGTTGGTAGTCCTTTGACTCAGATTGCGGTCGTGTTTATGGCTGCTTGGAGGAAGAGACACATGCAATTGCCCTCTGATTCTTCATTGCTCTATGAAGAGGATGATATCCTATGTGAAACACCTAAGACCAAGAAGCAAAGGATGCCACATAGCAAACAGTTCCGTTTCTTAGACAAAGCGGCAATCAAAGGCATAGAAAGTGGCAGTGCAATCACAATCAAGGAGAAATGGTATATCTCTACCTTAACAGATGTGGAAGAAGTTAAAATGGTAATAAGGATGTTACCCATATGGGCCACAACCATAATGTTTTGGACAATCCATGCTCAAATGACAACATTCTCAGTATCACAAGCAACAACCATGGATTGTCACATTGGAACATTTCAAATCCCAGCAGCATCAATGACGGTCTTCTTAATCGGAACTATTCTCCTAACTGTTCCTTTCTACGACCGCTTCATTCGACCAGTCGCAAAAAAATTACTAAACAACTCACACGGATTCACTCCTTTACAACGCATTGGTGTTGGTTTAGTCCTCTCAGTAGTGTCCATGGTTGCGGCAGCACTCATAGAAATGAAGCGGTTGAAATTCGCACGATCACATGGTTTTGTAAACGATCCAACGGCAAAGATGCCATTGAGTGTGTTTTGGTTGGTGCCACAATTTTTCTTTGTTGGGTCTGGAGAGGCCTTTATGTATATGGGACAATTAGACTTTTTTTTAAGAGAATGTCCTAAAGGAATGAAAACTATGAGTACAGGGTTGTTCTTGAGCACACTCTCAATAGGGTTTTTCTTTAGCTCATTATTAGTGACTCTAGTGAACAATGTGACGGGTCCAAATAAACCATGGATTGCGGATAATCTTGATCAAGGGAGGCTCTATGATTTTTATTGGCTATTGGCTATGCTAAGTGCTATAAATGTGGTGATATATTTGGCTTGTGCTAAGTGGTATGTGTACAAGGACAAGAGACTTGCTGAGGCGGGCATAGAATTGGAAGAAATAGATGCCTCTACATTCCATGCATAG
Protein sequence

>Msa0711570

MSTLPTTQGKTVPDASDYKGRLADRSTTGGWSAAAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAASANVVTNFLGTSFMLCLLGGFLADTFLGRYLTIAIFAAVQAIGVTILTISTIIPSLHPPKCKEDSKSCIQADSKQLLVMYLALYITALGTGGLKSSVSGFGSDQFDDSDDQEKKGMIKFFSWFYFFVSIGSLAAVTVLVYIQDNQGRGWGYGICAVAIVVALLVFLSGTRKYRIKQLVGSPLTQIAVVFMAAWRKRHMQLPSDSSLLYEEDDILCETPKTKKQRMPHSKQFRFLDKAAIKGIESGSAITIKEKWYISTLTDVEEVKMVIRMLPIWATTIMFWTIHAQMTTFSVSQATTMDCHIGTFQIPAASMTVFLIGTILLTVPFYDRFIRPVAKKLLNNSHGFTPLQRIGVGLVLSVVSMVAAALIEMKRLKFARSHGFVNDPTAKMPLSVFWLVPQFFFVGSGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSIGFFFSSLLVTLVNNVTGPNKPWIADNLDQGRLYDFYWLLAMLSAINVVIYLACAKWYVYKDKRLAEAGIELEEIDASTFHA*