AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833860 MtrunA17_Chr5g0399071 98.816 591 7 0 1 591 1 591 0.0 1204
Msa0833860 MtrunA17_Chr5g0399061 74.786 583 143 3 1 580 1 582 0.0 910
Msa0833860 MtrunA17_Chr4g0056431 72.054 594 162 4 1 591 1 593 0.0 864
Msa0833860 MtrunA17_Chr4g0063591 57.168 572 219 9 11 573 8 562 0.0 577
Msa0833860 MtrunA17_Chr5g0439381 50.802 561 249 5 15 570 18 556 0.0 530
Msa0833860 MtrunA17_Chr4g0005901 45.781 557 290 8 17 570 24 571 1.33e-171 499
Msa0833860 MtrunA17_Chr7g0241741 45.781 557 290 8 17 570 14 561 9.85e-168 489
Msa0833860 MtrunA17_Chr8g0375311 43.705 556 306 4 17 570 32 582 3.00e-165 483
Msa0833860 MtrunA17_Chr3g0104011 44.444 558 298 7 17 570 14 563 3.44e-163 478
Msa0833860 MtrunA17_Chr8g0375291 43.818 550 302 4 17 564 32 576 1.46e-161 474
Msa0833860 MtrunA17_Chr8g0375341 41.889 561 317 5 17 575 32 585 4.47e-159 468
Msa0833860 MtrunA17_Chr8g0375351 42.068 561 316 5 17 575 32 585 6.38e-157 462
Msa0833860 MtrunA17_Chr5g0422881 41.918 563 318 7 25 583 20 577 2.57e-154 455
Msa0833860 MtrunA17_Chr8g0375361 42.806 556 311 4 17 570 31 581 2.62e-151 447
Msa0833860 MtrunA17_Chr8g0375321 40.787 559 322 5 17 573 29 580 2.34e-150 445
Msa0833860 MtrunA17_Chr3g0142101 40.283 566 318 9 17 579 27 575 5.04e-148 439
Msa0833860 MtrunA17_Chr8g0375331 40.981 571 327 6 6 573 4 567 5.29e-148 439
Msa0833860 MtrunA17_Chr7g0261881 40.587 579 328 7 17 590 19 586 1.77e-147 438
Msa0833860 MtrunA17_Chr3g0142091 39.930 571 320 8 14 576 15 570 1.42e-143 427
Msa0833860 MtrunA17_Chr7g0261811 40.587 579 324 8 17 588 19 584 6.30e-143 427
Msa0833860 MtrunA17_Chr7g0255621 37.828 571 340 6 21 588 16 574 2.06e-142 426
Msa0833860 MtrunA17_Chr1g0187241 39.138 557 328 5 17 570 18 566 1.29e-136 410
Msa0833860 MtrunA17_Chr7g0217461 38.632 585 339 6 11 583 10 586 1.17e-134 405
Msa0833860 MtrunA17_Chr1g0166711 39.487 585 338 6 7 588 11 582 1.52e-133 402
Msa0833860 MtrunA17_Chr1g0166791 38.095 567 336 7 7 570 10 564 9.62e-132 398
Msa0833860 MtrunA17_Chr7g0261771 38.144 582 340 8 7 582 17 584 1.01e-130 395
Msa0833860 MtrunA17_Chr4g0054891 36.555 569 341 7 7 567 92 648 4.15e-130 396
Msa0833860 MtrunA17_Chr5g0400371 37.370 578 351 7 11 583 98 669 4.18e-130 396
Msa0833860 MtrunA17_Chr7g0214461 36.804 557 337 6 14 567 67 611 5.99e-130 394
Msa0833860 MtrunA17_Chr7g0255601 37.455 550 338 5 24 570 26 572 8.88e-130 393
Msa0833860 MtrunA17_Chr7g0255611 34.940 581 367 8 17 591 23 598 4.27e-129 391
Msa0833860 MtrunA17_Chr2g0276751 37.716 578 325 10 3 570 11 563 4.82e-129 390
Msa0833860 MtrunA17_Chr1g0166741 38.779 557 323 6 17 570 19 560 5.36e-129 390
Msa0833860 MtrunA17_Chr3g0133341 37.809 566 330 7 21 578 10 561 3.14e-128 388
Msa0833860 MtrunA17_Chr7g0261791 36.815 584 353 6 5 582 9 582 2.04e-127 387
Msa0833860 MtrunA17_Chr8g0362711 38.144 582 332 6 4 570 3 571 1.63e-126 384
Msa0833860 MtrunA17_Chr4g0008651 38.095 567 332 11 10 571 18 570 5.52e-126 383
Msa0833860 MtrunA17_Chr7g0261851 37.743 567 338 6 19 580 22 578 7.28e-126 383
Msa0833860 MtrunA17_Chr1g0166771 39.612 515 293 6 42 553 8 507 1.29e-125 380
Msa0833860 MtrunA17_Chr7g0240381 38.095 567 326 11 10 571 13 559 1.75e-125 381
Msa0833860 MtrunA17_Chr4g0014841 38.569 573 317 9 11 578 15 557 9.57e-125 379
Msa0833860 MtrunA17_Chr4g0014871 38.112 572 322 8 12 578 17 561 1.49e-124 378
Msa0833860 MtrunA17_Chr7g0218851 35.144 589 357 8 8 587 29 601 2.64e-124 379
Msa0833860 MtrunA17_Chr3g0112671 38.313 569 326 10 6 570 13 560 4.59e-124 377
Msa0833860 MtrunA17_Chr4g0014791 38.276 580 323 10 4 578 8 557 6.16e-124 376
Msa0833860 MtrunA17_Chr3g0112611 36.364 572 343 9 6 570 12 569 5.08e-123 375
Msa0833860 MtrunA17_Chr5g0415961 39.024 574 317 10 17 572 16 574 2.14e-122 373
Msa0833860 MtrunA17_Chr3g0114501 37.148 568 339 10 17 577 14 570 3.19e-121 370
Msa0833860 MtrunA17_Chr1g0213711 35.951 573 349 9 17 586 14 571 1.53e-120 369
Msa0833860 MtrunA17_Chr5g0415791 36.598 582 343 11 1 570 10 577 2.18e-120 369
Msa0833860 MtrunA17_Chr4g0014781 38.324 561 313 9 17 572 21 553 2.73e-120 367
Msa0833860 MtrunA17_Chr1g0193391 36.204 569 327 11 25 583 17 559 7.55e-120 367
Msa0833860 MtrunA17_Chr2g0284701 37.018 570 342 11 17 572 24 590 8.71e-120 367
Msa0833860 MtrunA17_Chr3g0077151 38.556 568 305 11 10 570 13 543 9.75e-119 363
Msa0833860 MtrunA17_Chr7g0271221 36.283 565 334 8 25 584 17 560 1.15e-118 363
Msa0833860 MtrunA17_Chr4g0014801 38.070 570 320 8 8 572 12 553 4.89e-118 361
Msa0833860 MtrunA17_Chr7g0214731 37.148 568 333 6 24 576 60 618 8.65e-118 363
Msa0833860 MtrunA17_Chr4g0059991 31.894 602 388 8 1 588 1 594 2.15e-115 356
Msa0833860 MtrunA17_Chr8g0379971 36.851 597 337 13 17 580 12 601 7.71e-115 354
Msa0833860 MtrunA17_Chr8g0353031 36.332 567 328 8 25 578 16 562 5.40e-113 348
Msa0833860 MtrunA17_Chr4g0059971 31.959 582 378 7 2 571 10 585 8.25e-110 341
Msa0833860 MtrunA17_Chr4g0059981 31.323 597 381 10 7 584 7 593 1.67e-109 340
Msa0833860 MtrunA17_Chr1g0166731 40.693 462 262 5 112 570 9 461 3.67e-109 335
Msa0833860 MtrunA17_Chr4g0011471 35.140 535 331 6 40 567 31 556 9.29e-108 335
Msa0833860 MtrunA17_Chr8g0362781 32.709 587 373 8 3 574 6 585 1.13e-107 335
Msa0833860 MtrunA17_Chr4g0011041 32.200 559 363 5 17 567 28 578 1.93e-107 335
Msa0833860 MtrunA17_Chr8g0379991 36.505 578 320 12 46 580 1 574 1.20e-106 332
Msa0833860 MtrunA17_Chr4g0069581 37.388 559 319 11 43 591 1 538 6.37e-106 330
Msa0833860 MtrunA17_Chr7g0261661 38.254 481 277 8 115 588 3 470 3.72e-104 323
Msa0833860 MtrunA17_Chr4g0014861 38.182 440 251 7 138 572 7 430 5.66e-98 305
Msa0833860 MtrunA17_Chr8g0362801 36.247 469 276 9 115 570 3 461 2.04e-95 300
Msa0833860 MtrunA17_Chr7g0261751 37.037 486 250 7 7 451 17 487 3.60e-95 301
Msa0833860 MtrunA17_Chr2g0331471 32.860 563 343 14 21 567 86 629 1.70e-94 304
Msa0833860 MtrunA17_Chr3g0082631 37.471 435 264 5 149 576 32 465 2.93e-94 297
Msa0833860 MtrunA17_Chr4g0003761 31.162 568 360 12 29 583 34 583 4.68e-93 298
Msa0833860 MtrunA17_Chr2g0331511 31.818 572 357 12 11 567 9 562 1.14e-91 295
Msa0833860 MtrunA17_Chr2g0331481 31.294 572 356 13 14 567 14 566 3.89e-91 294
Msa0833860 MtrunA17_Chr8g0390331 32.661 545 345 8 29 564 19 550 4.89e-90 289
Msa0833860 MtrunA17_Chr2g0331521 29.016 579 384 11 25 590 22 586 5.71e-90 289
Msa0833860 MtrunA17_Chr1g0157601 32.065 552 357 11 23 567 13 553 3.28e-89 286
Msa0833860 MtrunA17_Chr2g0325961 33.752 557 331 11 26 571 20 549 8.02e-88 282
Msa0833860 MtrunA17_Chr2g0325951 32.252 555 341 12 26 571 20 548 5.37e-87 280
Msa0833860 MtrunA17_Chr1g0157611 32.671 554 347 12 25 567 16 554 1.14e-84 275
Msa0833860 MtrunA17_Chr4g0060001 29.636 577 381 12 17 580 18 582 3.57e-81 266
Msa0833860 MtrunA17_Chr1g0147631 31.181 542 352 10 29 561 29 558 2.89e-80 264
Msa0833860 MtrunA17_Chr7g0240271 29.795 584 381 12 16 585 15 583 6.74e-80 263
Msa0833860 MtrunA17_Chr2g0331461 30.580 569 364 14 14 567 14 566 7.76e-80 264
Msa0833860 MtrunA17_Chr7g0261731 40.346 347 188 5 7 349 17 348 3.08e-79 254
Msa0833860 MtrunA17_Chr6g0451841 32.007 553 316 12 43 572 23 538 9.86e-79 258
Msa0833860 MtrunA17_Chr2g0326211 30.648 571 365 11 8 571 2 548 2.07e-78 258
Msa0833860 MtrunA17_Chr1g0177591 30.175 570 344 16 14 567 33 564 1.38e-76 253
Msa0833860 MtrunA17_Chr1g0157621 31.439 528 345 11 46 567 1 517 3.76e-76 252
Msa0833860 MtrunA17_Chr7g0240281 29.310 580 387 9 23 587 22 593 7.20e-75 249
Msa0833860 MtrunA17_Chr5g0415841 31.613 465 301 8 115 570 3 459 1.78e-74 245
Msa0833860 MtrunA17_Chr3g0142111 40.956 293 168 3 17 308 38 326 1.67e-73 238
Msa0833860 MtrunA17_Chr7g0235521 32.008 478 302 11 124 589 12 478 1.17e-67 227
Msa0833860 MtrunA17_Chr7g0240181 31.590 478 304 11 124 589 12 478 3.61e-66 223
Msa0833860 MtrunA17_Chr7g0240211 31.590 478 304 11 124 589 12 478 4.63e-66 223
Msa0833860 MtrunA17_Chr7g0240131 31.590 478 304 11 124 589 12 478 1.34e-65 222
Msa0833860 MtrunA17_Chr4g0060071 39.576 283 158 4 292 571 27 299 1.41e-63 211
Msa0833860 MtrunA17_Chr1g0177611 31.193 436 269 11 142 567 21 435 1.19e-61 210
Msa0833860 MtrunA17_Chr3g0112631 39.310 290 163 7 301 586 3 283 4.13e-61 204
Msa0833860 MtrunA17_Chr7g0240151 30.672 476 293 12 124 589 12 460 4.66e-61 209
Msa0833860 MtrunA17_Chr3g0142121 38.462 286 160 7 302 584 11 283 7.88e-59 198
Msa0833860 MtrunA17_Chr1g0177631 31.881 436 266 13 142 567 21 435 3.34e-56 196
Msa0833860 MtrunA17_Chr7g0234181 32.895 456 260 12 115 567 1 413 3.33e-54 189
Msa0833860 MtrunA17_Chr7g0234381 33.188 458 262 12 112 567 3 418 7.55e-54 189
Msa0833860 MtrunA17_Chr7g0234151 32.826 460 261 12 112 567 3 418 3.45e-53 187
Msa0833860 MtrunA17_Chr7g0261721 36.493 211 130 3 375 582 5 214 1.47e-39 144
Msa0833860 MtrunA17_Chr3g0112651 34.500 200 120 3 100 292 9 204 1.08e-31 122
Msa0833860 MtrunA17_Chr2g0326221 31.513 238 134 4 335 571 15 224 9.34e-30 117
Msa0833860 MtrunA17_Chr4g0060061 38.983 118 72 0 137 254 8 125 7.98e-25 100
Msa0833860 MtrunA17_Chr1g0147591 29.500 200 128 5 154 348 9 200 8.46e-22 93.6
Msa0833860 MtrunA17_Chr4g0060051 48.387 93 48 0 17 109 14 106 1.15e-20 88.2
Msa0833860 MtrunA17_Chr7g0261671 46.078 102 51 1 7 108 18 115 1.48e-20 87.4
Msa0833860 MtrunA17_Chr4g0014851 41.667 108 63 0 12 119 17 124 1.41e-19 86.3
Msa0833860 MtrunA17_Chr1g0166721 35.938 128 72 2 8 130 3 125 5.50e-19 84.0
Msa0833860 MtrunA17_Chr7g0261831 32.515 163 97 4 257 416 4 156 2.19e-18 84.3
Msa0833860 MtrunA17_Chr3g0112661 37.500 112 68 2 12 122 17 127 1.79e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833860 AT1G12110.1 63.077 585 208 5 3 583 2 582 0.0 744
Msa0833860 AT2G26690.1 56.128 563 226 6 11 567 8 555 0.0 595
Msa0833860 AT2G26690.2 55.140 535 219 6 39 567 3 522 0.0 551
Msa0833860 AT2G26690.3 54.857 525 216 6 49 567 1 510 0.0 538
Msa0833860 AT3G21670.1 52.043 563 244 7 14 570 16 558 0.0 536
Msa0833860 AT5G01180.2 43.088 557 306 6 17 570 15 563 2.63e-166 486
Msa0833860 AT5G01180.3 43.088 557 306 6 17 570 15 563 2.63e-166 486
Msa0833860 AT5G01180.1 43.088 557 306 6 17 570 15 563 2.63e-166 486
Msa0833860 AT3G54140.1 42.857 567 310 7 7 570 8 563 7.59e-164 479
Msa0833860 AT3G54140.2 42.857 567 310 7 7 570 8 563 7.59e-164 479
Msa0833860 AT2G02040.1 42.576 559 312 5 17 573 31 582 1.12e-159 469
Msa0833860 AT1G68570.1 42.907 571 312 8 7 570 5 568 3.67e-146 435
Msa0833860 AT1G68570.2 44.156 539 289 7 39 570 5 538 1.21e-143 427
Msa0833860 AT1G62200.1 39.292 565 327 6 6 565 30 583 1.03e-136 410
Msa0833860 AT1G62200.3 38.007 592 326 8 6 565 44 626 1.18e-132 402
Msa0833860 AT1G62200.2 38.007 592 326 8 6 565 30 612 1.43e-132 401
Msa0833860 AT1G59740.1 37.986 566 332 7 14 573 28 580 4.90e-132 399
Msa0833860 AT5G46050.1 36.934 574 344 8 17 585 17 577 2.65e-126 384
Msa0833860 AT2G02020.1 37.179 546 299 6 17 561 32 534 1.03e-125 381
Msa0833860 AT4G21680.1 38.298 564 328 6 17 569 18 572 1.55e-125 382
Msa0833860 AT5G46040.1 37.238 572 343 8 17 583 17 577 3.39e-125 381
Msa0833860 AT1G32450.1 36.380 558 345 6 17 567 27 581 5.24e-125 381
Msa0833860 AT2G37900.1 36.620 568 336 7 8 570 18 566 8.33e-124 377
Msa0833860 AT3G53960.1 38.179 571 331 10 8 570 17 573 2.96e-123 376
Msa0833860 AT1G69850.1 38.004 571 335 7 16 571 14 580 1.23e-122 374
Msa0833860 AT1G33440.1 38.342 579 327 11 17 586 28 585 2.02e-121 372
Msa0833860 AT1G72140.1 36.806 576 317 8 9 573 16 555 4.93e-121 369
Msa0833860 AT5G19640.1 37.385 543 316 7 28 567 60 581 3.10e-120 369
Msa0833860 AT2G40460.1 38.204 568 327 10 7 570 8 555 1.54e-118 363
Msa0833860 AT3G54450.1 34.690 565 346 7 24 583 9 555 2.49e-118 362
Msa0833860 AT1G27040.2 38.393 560 324 7 16 569 12 556 3.51e-118 362
Msa0833860 AT5G13400.1 36.503 589 350 10 9 587 47 621 4.02e-118 364
Msa0833860 AT1G27040.1 38.393 560 324 7 16 569 16 560 4.21e-118 362
Msa0833860 AT1G69870.1 34.760 584 351 12 11 585 41 603 2.51e-113 351
Msa0833860 AT1G27040.3 39.286 532 308 7 41 569 9 528 1.03e-112 347
Msa0833860 AT1G22540.1 38.998 559 310 8 17 570 20 552 4.09e-111 343
Msa0833860 AT5G62730.1 35.689 566 332 8 17 573 46 588 1.53e-110 343
Msa0833860 AT2G37900.2 36.217 497 294 6 79 571 11 488 4.14e-109 337
Msa0833860 AT2G02020.2 35.348 546 288 9 17 561 32 513 2.57e-108 335
Msa0833860 AT1G22570.1 36.667 570 326 10 12 570 15 560 6.63e-108 335
Msa0833860 AT1G72120.1 35.902 571 330 9 8 570 10 552 1.18e-106 332
Msa0833860 AT1G22550.1 35.026 571 335 9 11 570 14 559 5.57e-106 330
Msa0833860 AT5G62730.2 35.455 550 323 8 33 573 3 529 1.45e-105 328
Msa0833860 AT1G72125.1 34.555 573 339 11 8 570 10 556 6.04e-105 328
Msa0833860 AT1G72130.1 36.331 556 299 11 25 570 23 533 1.03e-102 321
Msa0833860 AT1G18880.1 31.712 555 357 8 30 571 22 567 1.85e-101 320
Msa0833860 AT5G46050.2 36.345 476 285 8 115 585 3 465 3.64e-98 307
Msa0833860 AT1G22570.2 36.213 544 312 10 38 570 4 523 1.37e-97 308
Msa0833860 AT1G52190.1 31.892 555 359 7 25 567 19 566 1.66e-97 310
Msa0833860 AT5G62680.1 32.379 559 348 11 30 570 46 592 3.17e-95 304
Msa0833860 AT3G25260.1 33.574 554 316 11 17 567 11 515 4.05e-95 301
Msa0833860 AT3G47960.1 32.914 556 347 10 30 570 64 608 7.12e-95 304
Msa0833860 AT3G16180.1 31.866 568 367 10 13 567 5 565 1.09e-93 299
Msa0833860 AT3G25280.1 33.874 555 321 12 16 567 10 521 9.61e-90 287
Msa0833860 AT3G45660.1 30.479 584 375 9 9 590 3 557 1.39e-88 285
Msa0833860 AT3G45660.3 30.479 584 375 9 9 590 3 557 1.39e-88 285
Msa0833860 AT1G27080.1 32.628 567 347 12 29 585 16 557 1.98e-88 285
Msa0833860 AT3G45660.2 30.479 584 375 9 9 590 24 578 2.95e-88 285
Msa0833860 AT3G45710.1 29.895 572 372 12 21 588 14 560 1.14e-83 272
Msa0833860 AT1G69860.1 30.261 575 369 11 4 571 1 550 1.94e-82 269
Msa0833860 AT3G45650.1 29.676 556 362 9 23 573 15 546 4.22e-81 265
Msa0833860 AT3G45680.1 29.453 567 367 10 26 587 19 557 3.88e-80 263
Msa0833860 AT1G72130.2 35.308 439 241 9 141 569 9 414 1.53e-78 254
Msa0833860 AT1G72130.3 35.308 439 241 9 141 569 9 414 1.53e-78 254
Msa0833860 AT5G14940.1 31.627 547 321 11 43 567 23 538 3.05e-78 258
Msa0833860 AT1G27080.2 32.528 538 328 12 58 585 3 515 5.72e-78 256
Msa0833860 AT3G45720.1 29.831 533 336 11 46 570 38 540 3.07e-77 255
Msa0833860 AT3G01350.1 30.900 589 346 11 24 583 4 560 5.65e-77 254
Msa0833860 AT5G28470.2 29.159 559 372 9 25 573 15 559 1.64e-76 253
Msa0833860 AT3G45650.2 28.351 582 362 10 23 573 15 572 5.64e-76 253
Msa0833860 AT3G45700.1 29.331 583 358 15 16 584 4 546 6.55e-76 251
Msa0833860 AT5G28470.1 28.980 559 371 10 25 573 15 557 1.57e-73 245
Msa0833860 AT3G45690.1 28.780 549 323 13 26 571 17 500 3.84e-68 230
Msa0833860 AT5G11570.1 26.916 535 306 9 37 567 23 476 2.35e-53 189
Msa0833860 AT2G38100.2 26.604 530 337 13 55 573 2 490 1.12e-42 160
Msa0833860 AT2G38100.3 26.604 530 337 13 55 573 24 512 1.69e-42 160
Msa0833860 AT2G38100.1 26.604 530 337 13 55 573 18 506 2.79e-42 160

Find 170 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGCAATCCATGGTTTATT+TGG 0.146472 5_4:-6959351 None:intergenic
CTCCTTTATGCTCTGTCTAT+TGG 0.183421 5_4:+6955264 Msa0833860:CDS
TTAGAGTCTTCTTTGCATTT+TGG 0.212251 5_4:-6956079 None:intergenic
ATGTGGCATCCTTTGCTTCT+TGG 0.223376 5_4:-6956563 None:intergenic
ACTCGGCATCGCCGTTAATT+TGG 0.225881 5_4:+6955168 Msa0833860:CDS
TGAAGCTGTTTATTTGAAAA+AGG 0.227154 5_4:-6959786 None:intergenic
TCCTTTATGCTCTGTCTATT+GGG 0.231899 5_4:+6955265 Msa0833860:CDS
TGGAGAGGCCTTTATGTATA+TGG 0.257387 5_4:+6959194 Msa0833860:CDS
ATCCTTTGCTTCTTGGTCTT+AGG 0.272928 5_4:-6956556 None:intergenic
AATGTTGTTACTAATTTCTT+AGG 0.273061 5_4:+6955238 Msa0833860:CDS
CTTGACCGGTACTATGCATT+TGG 0.289091 5_4:+6955198 Msa0833860:CDS
ATGGATTGTCCAAAACATTA+TGG 0.311360 5_4:-6958809 None:intergenic
CATTATGGTTGTGGCCCATA+TGG 0.330752 5_4:-6958794 None:intergenic
TATAAATGTGGTGATATATT+TGG 0.333642 5_4:+6959431 Msa0833860:CDS
TTTCGTAAGCATAGGGTCTT+TGG 0.338269 5_4:+6956279 Msa0833860:CDS
AAATCTAGTGTCTCTGGCTT+TGG 0.347040 5_4:+6956184 Msa0833860:CDS
GGGCCACAACCATAATGTTT+TGG 0.348324 5_4:+6958800 Msa0833860:CDS
AGATGTGGAAGAAGTTAAAA+TGG 0.350382 5_4:+6958756 Msa0833860:CDS
TTGCTTGATCCGGTACTTGC+GGG 0.377777 5_4:-6956410 None:intergenic
AAGAAGTTAAAATGGTAATA+AGG 0.380191 5_4:+6958764 Msa0833860:CDS
TTCTTGAGCACACTCTCAAT+AGG 0.380892 5_4:+6959279 Msa0833860:CDS
AGATGCCATTGAGTGTGTTT+TGG 0.390364 5_4:+6959142 Msa0833860:CDS
TGCTGAGGCGGGCATAGAAT+TGG 0.392359 5_4:+6959491 Msa0833860:CDS
CCCTTGTAATCAGATGCATC+TGG 0.396538 5_4:-6955061 None:intergenic
CAACACCAATGCGTTGTAAA+GGG 0.396868 5_4:-6959017 None:intergenic
CAAGGTAGAGGTTGGGGTTA+CGG 0.404173 5_4:+6956337 Msa0833860:CDS
AACTTCTTCCACATCTGTTA+AGG 0.406906 5_4:-6958749 None:intergenic
TCTTGAGCACACTCTCAATA+GGG 0.411173 5_4:+6959280 Msa0833860:CDS
TCCGCGGCCGCCATGATATT+AGG 0.415550 5_4:+6955118 Msa0833860:CDS
TAATAAGGATGTTACCCATA+TGG 0.419503 5_4:+6958779 Msa0833860:CDS
CTCAGTAGTGTCCATGGTTG+CGG 0.432988 5_4:+6959050 Msa0833860:CDS
CCCAGATGCATCTGATTACA+AGG 0.434717 5_4:+6955060 Msa0833860:CDS
CAATCACAATCAAGGAGAAA+TGG 0.435261 5_4:+6958716 Msa0833860:CDS
TTTCTAAGAGAATGTCCTAA+AGG 0.437158 5_4:+6959231 Msa0833860:CDS
GTTTAATGGATATCTATTGA+TGG 0.439450 5_4:-6959764 None:intergenic
GAGATTATCTTACAATTGCT+TGG 0.439655 5_4:-6955738 None:intergenic
TTGACCGGTACTATGCATTT+GGG 0.441330 5_4:+6955199 Msa0833860:CDS
TCAATGACGGTCTTCTTAAT+CGG 0.441765 5_4:+6958910 Msa0833860:CDS
TGCCACATAGCAAACAGTTC+CGG 0.441974 5_4:+6956578 Msa0833860:CDS
CTAGGGGAATTAAGTGAGTT+GGG 0.443425 5_4:-6954968 None:intergenic
GGTATGTGAAATGTGAAGCT+AGG 0.447060 5_4:-6954986 None:intergenic
TACATCACGGCCCTCGGCAC+CGG 0.448076 5_4:+6956154 Msa0833860:CDS
GCCTCTACATTCCATGCATA+GGG 0.450174 5_4:+6959525 Msa0833860:CDS
TCCTAATATCATGGCGGCCG+CGG 0.451996 5_4:-6955119 None:intergenic
GGTCGTAGAAAGGAACAGTT+AGG 0.460679 5_4:-6958942 None:intergenic
TTTCCCTTGTGTTGTAGGGA+GGG 0.463914 5_4:-6955032 None:intergenic
AGCAGACAGCAAGCAACTAT+TGG 0.464045 5_4:+6956114 Msa0833860:CDS
AGATAACCAAGGTAGAGGTT+GGG 0.464346 5_4:+6956330 Msa0833860:CDS
AATTTGGTCACATACTTGAC+CGG 0.465748 5_4:+6955184 Msa0833860:CDS
GGAATGAAAACTATGAGTAC+AGG 0.465946 5_4:+6959252 Msa0833860:CDS
CGGTCGTGTTTGTGGCTGCT+TGG 0.467550 5_4:+6956461 Msa0833860:CDS
CCAACACCAATGCGTTGTAA+AGG 0.467762 5_4:-6959018 None:intergenic
TAATTGTCCCATATACATAA+AGG 0.467859 5_4:-6959202 None:intergenic
TCAGATTGCGGTCGTGTTTG+TGG 0.468178 5_4:+6956453 Msa0833860:CDS
CTCAATGGCATCTTTGCCGT+TGG 0.474314 5_4:-6959132 None:intergenic
TGCTTGGACAGCTGCAAAGA+TGG 0.474359 5_4:-6955722 None:intergenic
AAGACCGTCATTGATGCTGC+TGG 0.476879 5_4:-6958901 None:intergenic
ACAAGGGCCGGCCGGCCGAC+AGG 0.476979 5_4:+6955077 Msa0833860:CDS
CGCGGACCAACCACCGGTTG+TGG 0.478323 5_4:-6955101 None:intergenic
CACTTCTCCTCCTAATATCA+TGG 0.480052 5_4:-6955128 None:intergenic
GGTCTAAAATCTAGTGTCTC+TGG 0.480893 5_4:+6956178 Msa0833860:CDS
ACCCAATAGACAGAGCATAA+AGG 0.482538 5_4:-6955266 None:intergenic
TTCTGATGACCAAGAAAAGA+AGG 0.483279 5_4:+6956225 Msa0833860:CDS
GCTAGGGGAATTAAGTGAGT+TGG 0.483496 5_4:-6954969 None:intergenic
CGAATGAAGCGGTCGTAGAA+AGG 0.491283 5_4:-6958952 None:intergenic
CCTTTACAACGCATTGGTGT+TGG 0.492431 5_4:+6959018 Msa0833860:CDS
AATAAGGATGTTACCCATAT+GGG 0.493344 5_4:+6958780 Msa0833860:CDS
GGAGAGGCCTTTATGTATAT+GGG 0.496953 5_4:+6959195 Msa0833860:CDS
AGTCCTCTCAGTAGTGTCCA+TGG 0.500956 5_4:+6959044 Msa0833860:CDS
TATTTGTGCGGTCGCAATTG+TGG 0.501020 5_4:+6956360 Msa0833860:CDS
CAAGTATGTGACCAAATTAA+CGG 0.502223 5_4:-6955179 None:intergenic
TACCGGATCAAGCAACTTGT+TGG 0.502233 5_4:+6956418 Msa0833860:CDS
TTAAAATTCGCACGATCACA+TGG 0.502476 5_4:+6959096 Msa0833860:CDS
AAGATAACCAAGGTAGAGGT+TGG 0.503461 5_4:+6956329 Msa0833860:CDS
TGTCCAAAACATTATGGTTG+TGG 0.504094 5_4:-6958803 None:intergenic
TTTATGCTCTGTCTATTGGG+TGG 0.509907 5_4:+6955268 Msa0833860:CDS
TACCAACAAGTTGCTTGATC+CGG 0.510732 5_4:-6956420 None:intergenic
ATATTTCAACAAACATTATG+TGG 0.512875 5_4:+6959703 Msa0833860:three_prime_UTR
TACCGGAACTGTTTGCTATG+TGG 0.513274 5_4:-6956580 None:intergenic
TTCACCCCTTTACAACGCAT+TGG 0.516459 5_4:+6959012 Msa0833860:CDS
GTATGTGAAATGTGAAGCTA+GGG 0.516552 5_4:-6954985 None:intergenic
ACCAACCAAAACACACTCAA+TGG 0.517641 5_4:-6959147 None:intergenic
TCGTGTTTGTGGCTGCTTGG+AGG 0.518539 5_4:+6956464 Msa0833860:CDS
TTCTTCATTGCTCTATGAAG+AGG 0.518830 5_4:+6956513 Msa0833860:CDS
AGTGAGTTGGGATGACATGA+AGG 0.519676 5_4:-6954956 None:intergenic
CCGGTTGTGGACCTGTCGGC+CGG 0.519819 5_4:-6955088 None:intergenic
GTTGCTTGATCCGGTACTTG+CGG 0.522486 5_4:-6956411 None:intergenic
TTTCTTTGTTGGGTCTGGAG+AGG 0.523163 5_4:+6959179 Msa0833860:CDS
TTGTGGACCTGTCGGCCGGC+CGG 0.524891 5_4:-6955084 None:intergenic
CCGGCCGACAGGTCCACAAC+CGG 0.525288 5_4:+6955088 Msa0833860:CDS
GCACTTTACATCACGGCCCT+CGG 0.525416 5_4:+6956148 Msa0833860:CDS
GACAAGAGACTTGCTGAGGC+GGG 0.533846 5_4:+6959480 Msa0833860:CDS
ATTGCGGATAATCTTGATCA+AGG 0.535890 5_4:+6959366 Msa0833860:CDS
GATAACCAAGGTAGAGGTTG+GGG 0.537914 5_4:+6956331 Msa0833860:CDS
ATCTGATTACAAGGGCCGGC+CGG 0.538203 5_4:+6955069 Msa0833860:CDS
TGGTCTTAGGTGTTTCACAT+AGG 0.541798 5_4:-6956543 None:intergenic
CCTTGTAATCAGATGCATCT+GGG 0.541992 5_4:-6955060 None:intergenic
TGTCCGGTACCCGCAAGTAC+CGG 0.542640 5_4:+6956401 Msa0833860:CDS
GGCGGCCGCGGACCAACCAC+CGG 0.543833 5_4:-6955107 None:intergenic
ATCACGGCCCTCGGCACCGG+TGG 0.545009 5_4:+6956157 Msa0833860:CDS
ATTATGGTTGTGGCCCATAT+GGG 0.546937 5_4:-6958793 None:intergenic
CGTAACCCCAACCTCTACCT+TGG 0.549093 5_4:-6956336 None:intergenic
TGGCAGTGCAATCACAATCA+AGG 0.551937 5_4:+6958708 Msa0833860:CDS
TTAGACAAAGCGGCAATCAA+AGG 0.554882 5_4:+6958676 Msa0833860:CDS
GATATTAGGAGGAGAAGTGA+TGG 0.558978 5_4:+6955132 Msa0833860:CDS
TATGAGTGCTGCCGCAACCA+TGG 0.562291 5_4:-6959061 None:intergenic
CACCTAAGACCAAGAAGCAA+AGG 0.564356 5_4:+6956554 Msa0833860:CDS
TGCCTCTACATTCCATGCAT+AGG 0.564381 5_4:+6959524 Msa0833860:CDS
ACAACCATGGATTGTCACAT+TGG 0.565357 5_4:+6958865 Msa0833860:CDS
AAGCATAGGGTCTTTGGCAG+CGG 0.567922 5_4:+6956285 Msa0833860:CDS
GATCCGGTACTTGCGGGTAC+CGG 0.569345 5_4:-6956404 None:intergenic
ATGCATCTGATTACAAGGGC+CGG 0.569787 5_4:+6955065 Msa0833860:CDS
TGTTCCAATGTGACAATCCA+TGG 0.571949 5_4:-6958869 None:intergenic
ACGACCGCAATCTGAGTCAA+AGG 0.573004 5_4:-6956445 None:intergenic
TCCAAATAAACCATGGATTG+CGG 0.574971 5_4:+6959350 Msa0833860:CDS
GGACAAGAGACTTGCTGAGG+CGG 0.576506 5_4:+6959479 Msa0833860:CDS
TCAAGATTATCCGCAATCCA+TGG 0.577407 5_4:-6959360 None:intergenic
CACAACCGGTGGTTGGTCCG+CGG 0.578072 5_4:+6955102 Msa0833860:CDS
TAAGAAATTAGTAACAACAT+TGG 0.578419 5_4:-6955236 None:intergenic
GCAATCAAAGGCATAGAAAG+TGG 0.579246 5_4:+6958688 Msa0833860:CDS
TATCTCTACCTTAACAGATG+TGG 0.585721 5_4:+6958741 Msa0833860:CDS
ATTAGTAACAACATTGGCAG+AGG 0.586147 5_4:-6955230 None:intergenic
AGCACCCTCCCTACAACACA+AGG 0.588695 5_4:+6955028 Msa0833860:CDS
TAGTCCTTTGACTCAGATTG+CGG 0.589065 5_4:+6956441 Msa0833860:CDS
AGACCGTCATTGATGCTGCT+GGG 0.589637 5_4:-6958900 None:intergenic
TGCTAAGTGGTATGTGTACA+AGG 0.589791 5_4:+6959458 Msa0833860:CDS
AACACCAATGCGTTGTAAAG+GGG 0.591138 5_4:-6959016 None:intergenic
ACAGGTCCACAACCGGTGGT+TGG 0.591605 5_4:+6955095 Msa0833860:CDS
AAAAGACAAAGACTCAACTA+GGG 0.596229 5_4:-6959602 None:intergenic
AGAATGTTGTCATTTGAGCA+TGG 0.600950 5_4:-6958828 None:intergenic
ATTGCCCAAATGCATAGTAC+CGG 0.603355 5_4:-6955203 None:intergenic
TTGCAACTGGTCGAATGAAG+CGG 0.603555 5_4:-6958963 None:intergenic
ATACAAGATAACCAAGGTAG+AGG 0.606582 5_4:+6956325 Msa0833860:CDS
TATATTTGGCTTGTGCTAAG+TGG 0.609309 5_4:+6959445 Msa0833860:CDS
GGGATGACATGAAGGGCTTG+TGG 0.613318 5_4:-6954948 None:intergenic
ATGGAGAGATTGACAACACT+CGG 0.615658 5_4:+6955151 Msa0833860:CDS
GTATTTAGCACTTTACATCA+CGG 0.617039 5_4:+6956141 Msa0833860:CDS
GTGAGTTGGGATGACATGAA+GGG 0.620522 5_4:-6954955 None:intergenic
TTGCGGATAATCTTGATCAA+GGG 0.620665 5_4:+6959367 Msa0833860:CDS
GACTCTAGTGAACAATGTGA+CGG 0.622141 5_4:+6959326 Msa0833860:CDS
ACTCTAGTGAACAATGTGAC+GGG 0.623386 5_4:+6959327 Msa0833860:CDS
TCTGATGACCAAGAAAAGAA+GGG 0.624905 5_4:+6956226 Msa0833860:CDS
CGGATAATCTTGATCAAGGG+AGG 0.625811 5_4:+6959370 Msa0833860:CDS
ATAGAGCAATGAAGAATCAG+AGG 0.625823 5_4:-6956506 None:intergenic
ACCACCGGTTGTGGACCTGT+CGG 0.626051 5_4:-6955092 None:intergenic
CCTCTACATTCCATGCATAG+GGG 0.630402 5_4:+6959526 Msa0833860:CDS
CCCCTATGCATGGAATGTAG+AGG 0.633977 5_4:-6959526 None:intergenic
GCCGACAGGTCCACAACCGG+TGG 0.637663 5_4:+6955091 Msa0833860:CDS
GAATGAAAACTATGAGTACA+GGG 0.638544 5_4:+6959253 Msa0833860:CDS
CTCATATTGCAAGATATGAG+AGG 0.641438 5_4:-6955007 None:intergenic
CAGCACTCATAGAAATGAAG+CGG 0.643538 5_4:+6959073 Msa0833860:CDS
GACAGCTGCAAAGATGGCAA+TGG 0.645630 5_4:-6955716 None:intergenic
TAGAGCAATGAAGAATCAGA+GGG 0.646481 5_4:-6956505 None:intergenic
AATCCCAGCAGCATCAATGA+CGG 0.648376 5_4:+6958897 Msa0833860:CDS
TGACGGGTCCAAATAAACCA+TGG 0.653922 5_4:+6959343 Msa0833860:CDS
GCGGCCGCCATGATATTAGG+AGG 0.655145 5_4:+6955121 Msa0833860:CDS
TATGCTAAGTGCTATAAATG+TGG 0.657537 5_4:+6959419 Msa0833860:CDS
AAACAGTTTCTTAGACAAAG+CGG 0.657671 5_4:+6958666 Msa0833860:intron
AGTATCACAAGCAACAACCA+TGG 0.663164 5_4:+6958852 Msa0833860:CDS
TTGGGGTTACGGTATTTGTG+CGG 0.666939 5_4:+6956348 Msa0833860:CDS
CAATAGACAGAGCATAAAGG+AGG 0.685001 5_4:-6955263 None:intergenic
AAATTACTAAACAACTCACA+CGG 0.686574 5_4:+6958988 Msa0833860:CDS
TTCTCCTCCTAATATCATGG+CGG 0.687568 5_4:-6955125 None:intergenic
GGGTACCGGACAAGAAAACA+AGG 0.694489 5_4:-6956390 None:intergenic
CCAGATGCATCTGATTACAA+GGG 0.704068 5_4:+6955061 Msa0833860:CDS
CAAGGACAAGAGACTTGCTG+AGG 0.709240 5_4:+6959476 Msa0833860:CDS
CAACCATGGACACTACTGAG+AGG 0.733442 5_4:-6959047 None:intergenic
TATGTGAAATGTGAAGCTAG+GGG 0.736577 5_4:-6954984 None:intergenic
GCACCCTCCCTACAACACAA+GGG 0.747611 5_4:+6955029 Msa0833860:CDS
GTGTACATACAAGATAACCA+AGG 0.754045 5_4:+6956319 Msa0833860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATTGTATAAATAAA+GGG - chr5_4:6956806-6956825 None:intergenic 10.0%
!! TAAGAAAATTGTATAAATAA+AGG - chr5_4:6956807-6956826 None:intergenic 10.0%
!! TCATTCATTTATTTATTTAT+TGG + chr5_4:6957102-6957121 Msa0833860:intron 10.0%
!! TTTATATAATAGTATAGTAT+TGG + chr5_4:6957838-6957857 Msa0833860:intron 10.0%
!!! ATTAAAAAATTTTGCAATTT+TGG + chr5_4:6957915-6957934 Msa0833860:intron 10.0%
!!! TTTTGCAATTTTTTTTAATA+GGG + chr5_4:6958088-6958107 Msa0833860:intron 10.0%
!!! TTTTAAAAAGAAAATACAAA+TGG - chr5_4:6959684-6959703 None:intergenic 10.0%
!! AAAAAATTCCTTTCTTATTA+TGG + chr5_4:6955552-6955571 Msa0833860:intron 15.0%
!! ACAAATGTATGTTTATATTA+GGG + chr5_4:6956010-6956029 Msa0833860:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr5_4:6956741-6956760 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr5_4:6956742-6956761 None:intergenic 15.0%
!!! TTTTATTTGAAAACAAAAGT+TGG + chr5_4:6957279-6957298 Msa0833860:intron 15.0%
!!! TAAACCTTTATAATTTGTTT+GGG - chr5_4:6957462-6957481 None:intergenic 15.0%
!! TAAAGACATTTATCATTAAT+TGG + chr5_4:6957625-6957644 Msa0833860:intron 15.0%
!! AAAGACATTTATCATTAATT+GGG + chr5_4:6957626-6957645 Msa0833860:intron 15.0%
!!! CTTTTGCAATTTTTTTTAAT+AGG + chr5_4:6958087-6958106 Msa0833860:intron 15.0%
!!! TTTGCAATTTTTTTTAATAG+GGG + chr5_4:6958089-6958108 Msa0833860:intron 15.0%
!! ATTCTACTTAATTTACTTTA+AGG - chr5_4:6958356-6958375 None:intergenic 15.0%
!!! AGCTTTATTAATTTGTAATT+CGG - chr5_4:6958484-6958503 None:intergenic 15.0%
!! AATTAATTCATTAATCTTCA+AGG - chr5_4:6958630-6958649 None:intergenic 15.0%
!! TTTATTTGAAAAAGGTTTAA+TGG - chr5_4:6959781-6959800 None:intergenic 15.0%
!! TAAGAAATTAGTAACAACAT+TGG - chr5_4:6955239-6955258 None:intergenic 20.0%
!! AATGTTGTTACTAATTTCTT+AGG + chr5_4:6955238-6955257 Msa0833860:CDS 20.0%
!!! AGAATTTTTCAAGAAATAGT+TGG + chr5_4:6955380-6955399 Msa0833860:intron 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG + chr5_4:6955394-6955413 Msa0833860:intron 20.0%
!!! TTAGTTTTCCATAATAAGAA+AGG - chr5_4:6955563-6955582 None:intergenic 20.0%
!! AAAACCAATCATAATTAATG+TGG - chr5_4:6955626-6955645 None:intergenic 20.0%
!! AAAATAGTACTAGAAAACAA+TGG - chr5_4:6955784-6955803 None:intergenic 20.0%
!! AATATCAAAGAACTAAACAA+CGG - chr5_4:6955989-6956008 None:intergenic 20.0%
!! GACAAATGTATGTTTATATT+AGG + chr5_4:6956009-6956028 Msa0833860:intron 20.0%
!! AGAATGAATAGAAAATTTAC+CGG - chr5_4:6956600-6956619 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr5_4:6956672-6956691 None:intergenic 20.0%
!!! AGACACTTTTTTTTAGAAAA+TGG - chr5_4:6956673-6956692 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr5_4:6956709-6956728 None:intergenic 20.0%
!! AAAAGTGGAATATATTGTAT+CGG - chr5_4:6956783-6956802 None:intergenic 20.0%
!!! TTATAATTTGTTTGGGAATT+GGG - chr5_4:6957455-6957474 None:intergenic 20.0%
!!! TTTATAATTTGTTTGGGAAT+TGG - chr5_4:6957456-6957475 None:intergenic 20.0%
!! AATTCCCAAACAAATTATAA+AGG + chr5_4:6957455-6957474 Msa0833860:intron 20.0%
!!! CTAAACCTTTATAATTTGTT+TGG - chr5_4:6957463-6957482 None:intergenic 20.0%
!! ATGTAGAAAGAACAAATTAT+TGG + chr5_4:6957658-6957677 Msa0833860:intron 20.0%
!! TGTAGAAAGAACAAATTATT+GGG + chr5_4:6957659-6957678 Msa0833860:intron 20.0%
!!! TTGCAATTTTTTTTAATAGG+GGG + chr5_4:6958090-6958109 Msa0833860:intron 20.0%
!! AAGTTTCAAAAATCTAACTA+AGG + chr5_4:6958249-6958268 Msa0833860:intron 20.0%
!! CATTAACTAAAAACAAAGAA+AGG - chr5_4:6958290-6958309 None:intergenic 20.0%
!! AATTAAGTAGAATGATTGAA+AGG + chr5_4:6958363-6958382 Msa0833860:intron 20.0%
!! ATTAAGTAGAATGATTGAAA+GGG + chr5_4:6958364-6958383 Msa0833860:intron 20.0%
!!! TTTATTAATTTGTAATTCGG+TGG - chr5_4:6958481-6958500 None:intergenic 20.0%
!! AAGAAGTTAAAATGGTAATA+AGG + chr5_4:6958764-6958783 Msa0833860:CDS 20.0%
!!! TTTAGTAATTTTTTTGCAAC+TGG - chr5_4:6958979-6958998 None:intergenic 20.0%
!! TATAAATGTGGTGATATATT+TGG + chr5_4:6959431-6959450 Msa0833860:CDS 20.0%
!! ATATTTCAACAAACATTATG+TGG + chr5_4:6959703-6959722 Msa0833860:three_prime_UTR 20.0%
!!! ATACTTTCTTTTGTTACATT+TGG - chr5_4:6959860-6959879 None:intergenic 20.0%
! TGATCCACATTAATTATGAT+TGG + chr5_4:6955619-6955638 Msa0833860:intron 25.0%
! ATATCTGTCAAACAAAGAAT+GGG - chr5_4:6955692-6955711 None:intergenic 25.0%
!! ACGGTATGATTAAATTTTTG+AGG - chr5_4:6955970-6955989 None:intergenic 25.0%
!!! GTATGATTAAATTTTTCAGC+TGG + chr5_4:6956248-6956267 Msa0833860:CDS 25.0%
!!! TTCTATTTTTTCGTAAGCAT+AGG + chr5_4:6956271-6956290 Msa0833860:CDS 25.0%
!!! TCTATTTTTTCGTAAGCATA+GGG + chr5_4:6956272-6956291 Msa0833860:CDS 25.0%
! AAAGTGGAATATATTGTATC+GGG - chr5_4:6956782-6956801 None:intergenic 25.0%
! TGTATAAATAAAGGGAAAAG+TGG - chr5_4:6956798-6956817 None:intergenic 25.0%
! ATTAAGCTACTTAAACTAAG+AGG - chr5_4:6956972-6956991 None:intergenic 25.0%
!! TGACATAGTTGATATATTTG+TGG + chr5_4:6957207-6957226 Msa0833860:intron 25.0%
! TGACTCAAAATTGAATAGTT+TGG + chr5_4:6957234-6957253 Msa0833860:intron 25.0%
!!! TATAATTTGTTTGGGAATTG+GGG - chr5_4:6957454-6957473 None:intergenic 25.0%
! TCTTTATTGTTAGTTGCATA+CGG - chr5_4:6957611-6957630 None:intergenic 25.0%
! ATAAACCACACATTATTAGT+TGG - chr5_4:6957796-6957815 None:intergenic 25.0%
! TTCTCTCAAAAAATAATGTG+TGG + chr5_4:6957815-6957834 Msa0833860:intron 25.0%
!!! GCAACATTTTAAAACTTAGA+GGG - chr5_4:6957881-6957900 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG + chr5_4:6957886-6957905 Msa0833860:intron 25.0%
! TTTACAAAAAGTTGCGATTA+TGG - chr5_4:6957993-6958012 None:intergenic 25.0%
! AGAACATATTTCTCTAAACA+TGG + chr5_4:6958058-6958077 Msa0833860:intron 25.0%
! GAACATATTTCTCTAAACAT+GGG + chr5_4:6958059-6958078 Msa0833860:intron 25.0%
! AACATATTTCTCTAAACATG+GGG + chr5_4:6958060-6958079 Msa0833860:intron 25.0%
!! GTTTCAAAATGTTGCAATTT+TGG - chr5_4:6958116-6958135 None:intergenic 25.0%
!!! ATTGCAACATTTTGAAACTT+AGG + chr5_4:6958118-6958137 Msa0833860:intron 25.0%
!!! TTGCAACATTTTGAAACTTA+GGG + chr5_4:6958119-6958138 Msa0833860:intron 25.0%
! GTAAAAGCAATAATCTCAAA+AGG - chr5_4:6958204-6958223 None:intergenic 25.0%
! AAATTACTAAACAACTCACA+CGG + chr5_4:6958988-6959007 Msa0833860:CDS 25.0%
! TAATTGTCCCATATACATAA+AGG - chr5_4:6959205-6959224 None:intergenic 25.0%
!!! CTATGATTTTTATTGGCTAT+TGG + chr5_4:6959395-6959414 Msa0833860:CDS 25.0%
!! AACAGAAGAAAAAAGTTGAT+TGG - chr5_4:6959559-6959578 None:intergenic 25.0%
!! GTCTTTTTATAAAGAGTGAT+TGG + chr5_4:6959618-6959637 Msa0833860:three_prime_UTR 25.0%
!! GTTTAATGGATATCTATTGA+TGG - chr5_4:6959767-6959786 None:intergenic 25.0%
! TGAAGCTGTTTATTTGAAAA+AGG - chr5_4:6959789-6959808 None:intergenic 25.0%
CAAGTATGTGACCAAATTAA+CGG - chr5_4:6955182-6955201 None:intergenic 30.0%
! TTTCTTGCTGATACTTTTCT+AGG + chr5_4:6955292-6955311 Msa0833860:CDS 30.0%
TGTGACTGAAAAATAAGAAG+TGG - chr5_4:6955433-6955452 None:intergenic 30.0%
GATATCTGTCAAACAAAGAA+TGG - chr5_4:6955693-6955712 None:intergenic 30.0%
GAGATTATCTTACAATTGCT+TGG - chr5_4:6955741-6955760 None:intergenic 30.0%
! TTAGAGTCTTCTTTGCATTT+TGG - chr5_4:6956082-6956101 None:intergenic 30.0%
GTATTTAGCACTTTACATCA+CGG + chr5_4:6956141-6956160 Msa0833860:CDS 30.0%
! TAATCATACCCTTCTTTTCT+TGG - chr5_4:6956237-6956256 None:intergenic 30.0%
TCTGTGTGAAAAACTAAAGT+AGG + chr5_4:6956828-6956847 Msa0833860:intron 30.0%
CTAAAGTAGGTCAATTATAC+CGG + chr5_4:6956841-6956860 Msa0833860:intron 30.0%
TAAAGTAGGTCAATTATACC+GGG + chr5_4:6956842-6956861 Msa0833860:intron 30.0%
TTGCTATGTTTATGTCTTGT+TGG + chr5_4:6956942-6956961 Msa0833860:intron 30.0%
AAAGTTTCTCTTCCAATGAA+TGG + chr5_4:6956994-6957013 Msa0833860:intron 30.0%
ACTCAAATTGTTCCATTCAT+TGG - chr5_4:6957009-6957028 None:intergenic 30.0%
GTATAGACAATCTTCTCTAT+TGG - chr5_4:6957178-6957197 None:intergenic 30.0%
AAAGAAAAGAGAGGAGAAAA+TGG - chr5_4:6957428-6957447 None:intergenic 30.0%
GGAATATACTGTATATGTCA+AGG + chr5_4:6957516-6957535 Msa0833860:intron 30.0%
ATATACTGTATATGTCAAGG+AGG + chr5_4:6957519-6957538 Msa0833860:intron 30.0%
TATACTGTATATGTCAAGGA+GGG + chr5_4:6957520-6957539 Msa0833860:intron 30.0%
TTTGTTCTTTCTACATCAAG+TGG - chr5_4:6957654-6957673 None:intergenic 30.0%
AAATGACAACTGGGTTATTA+AGG + chr5_4:6957708-6957727 Msa0833860:intron 30.0%
AGAAACCAACTAATAATGTG+TGG + chr5_4:6957788-6957807 Msa0833860:intron 30.0%
!!! CGCAACATTTTAAAACTTAG+AGG - chr5_4:6957882-6957901 None:intergenic 30.0%
! CAACTTTTTGTAAAGATGTG+AGG + chr5_4:6957999-6958018 Msa0833860:intron 30.0%
! CATAAGGGAAATATGCTTTT+TGG - chr5_4:6958025-6958044 None:intergenic 30.0%
CATATTTCCCTTATGTTAGA+GGG + chr5_4:6958030-6958049 Msa0833860:intron 30.0%
ACATATTTCTCTAAACATGG+GGG + chr5_4:6958061-6958080 Msa0833860:intron 30.0%
!!! TGCAACATTTTGAAACTTAG+GGG + chr5_4:6958120-6958139 Msa0833860:intron 30.0%
CGATACGCAAAAAATACTAT+AGG - chr5_4:6958163-6958182 None:intergenic 30.0%
!!! AGGTAATTTTGATTGATGAG+AGG - chr5_4:6958336-6958355 None:intergenic 30.0%
TTGAAAGGGTCAATAAACTT+CGG + chr5_4:6958378-6958397 Msa0833860:intron 30.0%
TCTTCAAGGTAATAACAAAG+AGG - chr5_4:6958616-6958635 None:intergenic 30.0%
AAACAGTTTCTTAGACAAAG+CGG + chr5_4:6958666-6958685 Msa0833860:intron 30.0%
AGATGTGGAAGAAGTTAAAA+TGG + chr5_4:6958756-6958775 Msa0833860:CDS 30.0%
TAATAAGGATGTTACCCATA+TGG + chr5_4:6958779-6958798 Msa0833860:CDS 30.0%
AATAAGGATGTTACCCATAT+GGG + chr5_4:6958780-6958799 Msa0833860:CDS 30.0%
! ATGGATTGTCCAAAACATTA+TGG - chr5_4:6958812-6958831 None:intergenic 30.0%
! TGCCACAATTTTTCTTTGTT+GGG + chr5_4:6959169-6959188 Msa0833860:CDS 30.0%
! TTTCTAAGAGAATGTCCTAA+AGG + chr5_4:6959231-6959250 Msa0833860:CDS 30.0%
! CTCATAGTTTTCATTCCTTT+AGG - chr5_4:6959249-6959268 None:intergenic 30.0%
GAATGAAAACTATGAGTACA+GGG + chr5_4:6959253-6959272 Msa0833860:CDS 30.0%
TATGCTAAGTGCTATAAATG+TGG + chr5_4:6959419-6959438 Msa0833860:CDS 30.0%
AAAAGACAAAGACTCAACTA+GGG - chr5_4:6959605-6959624 None:intergenic 30.0%
AAAAAGACAAAGACTCAACT+AGG - chr5_4:6959606-6959625 None:intergenic 30.0%
! CTTTCTTTTGTTACATTTGG+AGG - chr5_4:6959857-6959876 None:intergenic 30.0%
TATGTGAAATGTGAAGCTAG+GGG - chr5_4:6954987-6955006 None:intergenic 35.0%
GTATGTGAAATGTGAAGCTA+GGG - chr5_4:6954988-6955007 None:intergenic 35.0%
CTCATATTGCAAGATATGAG+AGG - chr5_4:6955010-6955029 None:intergenic 35.0%
AATTTGGTCACATACTTGAC+CGG + chr5_4:6955184-6955203 Msa0833860:CDS 35.0%
ATTAGTAACAACATTGGCAG+AGG - chr5_4:6955233-6955252 None:intergenic 35.0%
TCCTTTATGCTCTGTCTATT+GGG + chr5_4:6955265-6955284 Msa0833860:CDS 35.0%
!! TTGCTGATACTTTTCTAGGA+AGG + chr5_4:6955296-6955315 Msa0833860:CDS 35.0%
ATTAACTCTCAGAAATCACG+AGG - chr5_4:6955653-6955672 None:intergenic 35.0%
TTCTGATGACCAAGAAAAGA+AGG + chr5_4:6956225-6956244 Msa0833860:CDS 35.0%
TCTGATGACCAAGAAAAGAA+GGG + chr5_4:6956226-6956245 Msa0833860:CDS 35.0%
GTGTACATACAAGATAACCA+AGG + chr5_4:6956319-6956338 Msa0833860:CDS 35.0%
ATACAAGATAACCAAGGTAG+AGG + chr5_4:6956325-6956344 Msa0833860:CDS 35.0%
TAGAGCAATGAAGAATCAGA+GGG - chr5_4:6956508-6956527 None:intergenic 35.0%
ATAGAGCAATGAAGAATCAG+AGG - chr5_4:6956509-6956528 None:intergenic 35.0%
TTCTTCATTGCTCTATGAAG+AGG + chr5_4:6956513-6956532 Msa0833860:CDS 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr5_4:6956659-6956678 None:intergenic 35.0%
TGGTTTCCAATCATGAAGAT+CGG - chr5_4:6957158-6957177 None:intergenic 35.0%
AAGGTAAGAGAAGGAAAAAG+TGG - chr5_4:6957395-6957414 None:intergenic 35.0%
AAAGAGAGGAGAAAATGGAA+GGG - chr5_4:6957423-6957442 None:intergenic 35.0%
AAAAGAGAGGAGAAAATGGA+AGG - chr5_4:6957424-6957443 None:intergenic 35.0%
ATACTGTATATGTCAAGGAG+GGG + chr5_4:6957521-6957540 Msa0833860:intron 35.0%
! GGTGCCACATATTTAATAGT+GGG + chr5_4:6957680-6957699 Msa0833860:intron 35.0%
ATGGCCCACTATTAAATATG+TGG - chr5_4:6957687-6957706 None:intergenic 35.0%
! ATAACCCAGTTGTCATTTCA+TGG - chr5_4:6957706-6957725 None:intergenic 35.0%
GATCATTTGCTCCTTAATCA+TGG + chr5_4:6957730-6957749 Msa0833860:intron 35.0%
!!! TCAACAATTTTGGGACGAAA+GGG - chr5_4:6957942-6957961 None:intergenic 35.0%
GCATATTTCCCTTATGTTAG+AGG + chr5_4:6958029-6958048 Msa0833860:intron 35.0%
! CTTTTGACCCTCTAACATAA+GGG - chr5_4:6958040-6958059 None:intergenic 35.0%
! TCTTTTGACCCTCTAACATA+AGG - chr5_4:6958041-6958060 None:intergenic 35.0%
!!! GTATTTTTTGCGTATCGCTT+TGG + chr5_4:6958166-6958185 Msa0833860:intron 35.0%
! GTCAAAAAAGAAGTATGCCT+TGG + chr5_4:6958309-6958328 Msa0833860:intron 35.0%
ATATGCATATTGCTCCTCTT+TGG + chr5_4:6958567-6958586 Msa0833860:intron 35.0%
CATATTAAGCAACACCAAAG+AGG - chr5_4:6958584-6958603 None:intergenic 35.0%
CAATCACAATCAAGGAGAAA+TGG + chr5_4:6958716-6958735 Msa0833860:CDS 35.0%
TATCTCTACCTTAACAGATG+TGG + chr5_4:6958741-6958760 Msa0833860:CDS 35.0%
AACTTCTTCCACATCTGTTA+AGG - chr5_4:6958752-6958771 None:intergenic 35.0%
TGTCCAAAACATTATGGTTG+TGG - chr5_4:6958806-6958825 None:intergenic 35.0%
! AGAATGTTGTCATTTGAGCA+TGG - chr5_4:6958831-6958850 None:intergenic 35.0%
TCAATGACGGTCTTCTTAAT+CGG + chr5_4:6958910-6958929 Msa0833860:CDS 35.0%
TTAAAATTCGCACGATCACA+TGG + chr5_4:6959096-6959115 Msa0833860:CDS 35.0%
!!! TGGTTTTGTAAACGATCCAA+CGG + chr5_4:6959116-6959135 Msa0833860:CDS 35.0%
! GTGCCACAATTTTTCTTTGT+TGG + chr5_4:6959168-6959187 Msa0833860:CDS 35.0%
GACCCAACAAAGAAAAATTG+TGG - chr5_4:6959174-6959193 None:intergenic 35.0%
! CAATTTTTCTTTGTTGGGTC+TGG + chr5_4:6959174-6959193 Msa0833860:CDS 35.0%
GGAATGAAAACTATGAGTAC+AGG + chr5_4:6959252-6959271 Msa0833860:CDS 35.0%
! TCCAAATAAACCATGGATTG+CGG + chr5_4:6959350-6959369 Msa0833860:CDS 35.0%
ATTGCGGATAATCTTGATCA+AGG + chr5_4:6959366-6959385 Msa0833860:CDS 35.0%
TTGCGGATAATCTTGATCAA+GGG + chr5_4:6959367-6959386 Msa0833860:CDS 35.0%
! GGAGGCTCTATGATTTTTAT+TGG + chr5_4:6959388-6959407 Msa0833860:CDS 35.0%
!! TATATTTGGCTTGTGCTAAG+TGG + chr5_4:6959445-6959464 Msa0833860:CDS 35.0%
CTAGGGGAATTAAGTGAGTT+GGG - chr5_4:6954971-6954990 None:intergenic 40.0%
GGTATGTGAAATGTGAAGCT+AGG - chr5_4:6954989-6955008 None:intergenic 40.0%
! CAGTTTTCCCTTGTGTTGTA+GGG - chr5_4:6955039-6955058 None:intergenic 40.0%
! ACAGTTTTCCCTTGTGTTGT+AGG - chr5_4:6955040-6955059 None:intergenic 40.0%
CCTTGTAATCAGATGCATCT+GGG - chr5_4:6955063-6955082 None:intergenic 40.0%
CCAGATGCATCTGATTACAA+GGG + chr5_4:6955061-6955080 Msa0833860:CDS 40.0%
TTCTCCTCCTAATATCATGG+CGG - chr5_4:6955128-6955147 None:intergenic 40.0%
CACTTCTCCTCCTAATATCA+TGG - chr5_4:6955131-6955150 None:intergenic 40.0%
GATATTAGGAGGAGAAGTGA+TGG + chr5_4:6955132-6955151 Msa0833860:CDS 40.0%
ATGGAGAGATTGACAACACT+CGG + chr5_4:6955151-6955170 Msa0833860:CDS 40.0%
TTGACCGGTACTATGCATTT+GGG + chr5_4:6955199-6955218 Msa0833860:CDS 40.0%
ATTGCCCAAATGCATAGTAC+CGG - chr5_4:6955206-6955225 None:intergenic 40.0%
CAATAGACAGAGCATAAAGG+AGG - chr5_4:6955266-6955285 None:intergenic 40.0%
CTCCTTTATGCTCTGTCTAT+TGG + chr5_4:6955264-6955283 Msa0833860:CDS 40.0%
ACCCAATAGACAGAGCATAA+AGG - chr5_4:6955269-6955288 None:intergenic 40.0%
TTTATGCTCTGTCTATTGGG+TGG + chr5_4:6955268-6955287 Msa0833860:CDS 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr5_4:6955456-6955475 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr5_4:6955459-6955478 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr5_4:6955467-6955486 Msa0833860:intron 40.0%
!! CTTTGCATTTTGGTGGATGT+AGG - chr5_4:6956072-6956091 None:intergenic 40.0%
! GAGTCTTCTTTGCATTTTGG+TGG - chr5_4:6956079-6956098 None:intergenic 40.0%
! GACACTAGATTTTAGACCAC+CGG - chr5_4:6956176-6956195 None:intergenic 40.0%
! GGTCTAAAATCTAGTGTCTC+TGG + chr5_4:6956178-6956197 Msa0833860:CDS 40.0%
! AAATCTAGTGTCTCTGGCTT+TGG + chr5_4:6956184-6956203 Msa0833860:CDS 40.0%
TTTCGTAAGCATAGGGTCTT+TGG + chr5_4:6956279-6956298 Msa0833860:CDS 40.0%
AAGATAACCAAGGTAGAGGT+TGG + chr5_4:6956329-6956348 Msa0833860:CDS 40.0%
AGATAACCAAGGTAGAGGTT+GGG + chr5_4:6956330-6956349 Msa0833860:CDS 40.0%
TACCAACAAGTTGCTTGATC+CGG - chr5_4:6956423-6956442 None:intergenic 40.0%
TAGTCCTTTGACTCAGATTG+CGG + chr5_4:6956441-6956460 Msa0833860:CDS 40.0%
! TGGTCTTAGGTGTTTCACAT+AGG - chr5_4:6956546-6956565 None:intergenic 40.0%
! ATCCTTTGCTTCTTGGTCTT+AGG - chr5_4:6956559-6956578 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr5_4:6956658-6956677 None:intergenic 40.0%
TAATAATACTACCTCCGTCC+CGG - chr5_4:6956863-6956882 None:intergenic 40.0%
TCAATCCCGATCTTCATGAT+TGG + chr5_4:6957149-6957168 Msa0833860:intron 40.0%
GGTTTCCAATCATGAAGATC+GGG - chr5_4:6957157-6957176 None:intergenic 40.0%
TTGGGGAGTAAAGAAAAGAG+AGG - chr5_4:6957437-6957456 None:intergenic 40.0%
GTCAACACAAAGTGATAGAG+TGG + chr5_4:6957495-6957514 Msa0833860:intron 40.0%
AATGAAACTCCCATGCATCT+TGG - chr5_4:6957568-6957587 None:intergenic 40.0%
! GGGTGCCACATATTTAATAG+TGG + chr5_4:6957679-6957698 Msa0833860:intron 40.0%
TGGACTTGTCACCATGATTA+AGG - chr5_4:6957744-6957763 None:intergenic 40.0%
TTAACTATTAAGCTCGTGCG+TGG - chr5_4:6957764-6957783 None:intergenic 40.0%
!!! CAACAATTTTGGGACGAAAG+GGG - chr5_4:6957941-6957960 None:intergenic 40.0%
!!! CTCAACAATTTTGGGACGAA+AGG - chr5_4:6957943-6957962 None:intergenic 40.0%
! GGCGTCTTCTCAACAATTTT+GGG - chr5_4:6957951-6957970 None:intergenic 40.0%
! TGGCGTCTTCTCAACAATTT+TGG - chr5_4:6957952-6957971 None:intergenic 40.0%
!!! GCGATTATGGTCCCTTTTTT+GGG - chr5_4:6957980-6957999 None:intergenic 40.0%
!!! TGCGATTATGGTCCCTTTTT+TGG - chr5_4:6957981-6958000 None:intergenic 40.0%
TTTGATTGATGAGAGGTCCA+AGG - chr5_4:6958329-6958348 None:intergenic 40.0%
TTAGACAAAGCGGCAATCAA+AGG + chr5_4:6958676-6958695 Msa0833860:CDS 40.0%
! GCAATCAAAGGCATAGAAAG+TGG + chr5_4:6958688-6958707 Msa0833860:CDS 40.0%
ATTATGGTTGTGGCCCATAT+GGG - chr5_4:6958796-6958815 None:intergenic 40.0%
AGTATCACAAGCAACAACCA+TGG + chr5_4:6958852-6958871 Msa0833860:CDS 40.0%
! ACAACCATGGATTGTCACAT+TGG + chr5_4:6958865-6958884 Msa0833860:CDS 40.0%
TGTTCCAATGTGACAATCCA+TGG - chr5_4:6958872-6958891 None:intergenic 40.0%
AACACCAATGCGTTGTAAAG+GGG - chr5_4:6959019-6959038 None:intergenic 40.0%
CAACACCAATGCGTTGTAAA+GGG - chr5_4:6959020-6959039 None:intergenic 40.0%
CAGCACTCATAGAAATGAAG+CGG + chr5_4:6959073-6959092 Msa0833860:CDS 40.0%
! AGATGCCATTGAGTGTGTTT+TGG + chr5_4:6959142-6959161 Msa0833860:CDS 40.0%
ACCAACCAAAACACACTCAA+TGG - chr5_4:6959150-6959169 None:intergenic 40.0%
TGGAGAGGCCTTTATGTATA+TGG + chr5_4:6959194-6959213 Msa0833860:CDS 40.0%
GGAGAGGCCTTTATGTATAT+GGG + chr5_4:6959195-6959214 Msa0833860:CDS 40.0%
TTCTTGAGCACACTCTCAAT+AGG + chr5_4:6959279-6959298 Msa0833860:CDS 40.0%
TCTTGAGCACACTCTCAATA+GGG + chr5_4:6959280-6959299 Msa0833860:CDS 40.0%
GACTCTAGTGAACAATGTGA+CGG + chr5_4:6959326-6959345 Msa0833860:CDS 40.0%
ACTCTAGTGAACAATGTGAC+GGG + chr5_4:6959327-6959346 Msa0833860:CDS 40.0%
TCCGCAATCCATGGTTTATT+TGG - chr5_4:6959354-6959373 None:intergenic 40.0%
TCAAGATTATCCGCAATCCA+TGG - chr5_4:6959363-6959382 None:intergenic 40.0%
TGCTAAGTGGTATGTGTACA+AGG + chr5_4:6959458-6959477 Msa0833860:CDS 40.0%
! GTGAGTTGGGATGACATGAA+GGG - chr5_4:6954958-6954977 None:intergenic 45.0%
! AGTGAGTTGGGATGACATGA+AGG - chr5_4:6954959-6954978 None:intergenic 45.0%
GCTAGGGGAATTAAGTGAGT+TGG - chr5_4:6954972-6954991 None:intergenic 45.0%
TTTCCCTTGTGTTGTAGGGA+GGG - chr5_4:6955035-6955054 None:intergenic 45.0%
! TTTTCCCTTGTGTTGTAGGG+AGG - chr5_4:6955036-6955055 None:intergenic 45.0%
CCCAGATGCATCTGATTACA+AGG + chr5_4:6955060-6955079 Msa0833860:CDS 45.0%
CCCTTGTAATCAGATGCATC+TGG - chr5_4:6955064-6955083 None:intergenic 45.0%
ATGCATCTGATTACAAGGGC+CGG + chr5_4:6955065-6955084 Msa0833860:CDS 45.0%
CTTGACCGGTACTATGCATT+TGG + chr5_4:6955198-6955217 Msa0833860:CDS 45.0%
AGTCACACCTCCTTGAATTG+TGG + chr5_4:6955446-6955465 Msa0833860:intron 45.0%
!! CATTTTGGTGGATGTAGGCT+TGG - chr5_4:6956067-6956086 None:intergenic 45.0%
AGCAGACAGCAAGCAACTAT+TGG + chr5_4:6956114-6956133 Msa0833860:CDS 45.0%
GATAACCAAGGTAGAGGTTG+GGG + chr5_4:6956331-6956350 Msa0833860:CDS 45.0%
TTGGGGTTACGGTATTTGTG+CGG + chr5_4:6956348-6956367 Msa0833860:CDS 45.0%
TATTTGTGCGGTCGCAATTG+TGG + chr5_4:6956360-6956379 Msa0833860:CDS 45.0%
TACCGGATCAAGCAACTTGT+TGG + chr5_4:6956418-6956437 Msa0833860:CDS 45.0%
CACCTAAGACCAAGAAGCAA+AGG + chr5_4:6956554-6956573 Msa0833860:CDS 45.0%
ATGTGGCATCCTTTGCTTCT+TGG - chr5_4:6956566-6956585 None:intergenic 45.0%
TGCCACATAGCAAACAGTTC+CGG + chr5_4:6956578-6956597 Msa0833860:CDS 45.0%
!! TACCGGAACTGTTTGCTATG+TGG - chr5_4:6956583-6956602 None:intergenic 45.0%
AATAATTACTCCCTCCGTCC+CGG + chr5_4:6956637-6956656 Msa0833860:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr5_4:6956846-6956865 Msa0833860:intron 45.0%
AGAAAATGGAAGGGATGGGA+AGG - chr5_4:6957414-6957433 None:intergenic 45.0%
GAGGAGAAAATGGAAGGGAT+GGG - chr5_4:6957418-6957437 None:intergenic 45.0%
AGAGGAGAAAATGGAAGGGA+TGG - chr5_4:6957419-6957438 None:intergenic 45.0%
GGCAGGATCAACATCGAATA+GGG - chr5_4:6957547-6957566 None:intergenic 45.0%
TGGCAGGATCAACATCGAAT+AGG - chr5_4:6957548-6957567 None:intergenic 45.0%
TTGATCCTGCCAAGATGCAT+GGG + chr5_4:6957556-6957575 Msa0833860:intron 45.0%
AGTTGCATACGGCTCTCAAT+TGG - chr5_4:6957600-6957619 None:intergenic 45.0%
TGGGCCATGAAATGACAACT+GGG + chr5_4:6957699-6957718 Msa0833860:intron 45.0%
TGGCAGTGCAATCACAATCA+AGG + chr5_4:6958708-6958727 Msa0833860:CDS 45.0%
CATTATGGTTGTGGCCCATA+TGG - chr5_4:6958797-6958816 None:intergenic 45.0%
! GGGCCACAACCATAATGTTT+TGG + chr5_4:6958800-6958819 Msa0833860:CDS 45.0%
AATCCCAGCAGCATCAATGA+CGG + chr5_4:6958897-6958916 Msa0833860:CDS 45.0%
GGTCGTAGAAAGGAACAGTT+AGG - chr5_4:6958945-6958964 None:intergenic 45.0%
TTGCAACTGGTCGAATGAAG+CGG - chr5_4:6958966-6958985 None:intergenic 45.0%
TTCACCCCTTTACAACGCAT+TGG + chr5_4:6959012-6959031 Msa0833860:CDS 45.0%
CCAACACCAATGCGTTGTAA+AGG - chr5_4:6959021-6959040 None:intergenic 45.0%
! CCTTTACAACGCATTGGTGT+TGG + chr5_4:6959018-6959037 Msa0833860:CDS 45.0%
!!! GCCATTGAGTGTGTTTTGGT+TGG + chr5_4:6959146-6959165 Msa0833860:CDS 45.0%
TTTCTTTGTTGGGTCTGGAG+AGG + chr5_4:6959179-6959198 Msa0833860:CDS 45.0%
! TGACGGGTCCAAATAAACCA+TGG + chr5_4:6959343-6959362 Msa0833860:CDS 45.0%
CGGATAATCTTGATCAAGGG+AGG + chr5_4:6959370-6959389 Msa0833860:CDS 45.0%
TGCCTCTACATTCCATGCAT+AGG + chr5_4:6959524-6959543 Msa0833860:CDS 45.0%
GCCTCTACATTCCATGCATA+GGG + chr5_4:6959525-6959544 Msa0833860:CDS 45.0%
CCTCTACATTCCATGCATAG+GGG + chr5_4:6959526-6959545 Msa0833860:CDS 45.0%
TGGTGAAAAACCCCTATGCA+TGG - chr5_4:6959539-6959558 None:intergenic 45.0%
!! TTTAATATATCTATAAAAAA+AGG + chr5_4:6955326-6955345 Msa0833860:intron 5.0%
!!! TTTTTAACATAATATAATTT+CGG + chr5_4:6957358-6957377 Msa0833860:intron 5.0%
ACTCGGCATCGCCGTTAATT+TGG + chr5_4:6955168-6955187 Msa0833860:CDS 50.0%
GACAGCTGCAAAGATGGCAA+TGG - chr5_4:6955719-6955738 None:intergenic 50.0%
TGCTTGGACAGCTGCAAAGA+TGG - chr5_4:6955725-6955744 None:intergenic 50.0%
AAGCATAGGGTCTTTGGCAG+CGG + chr5_4:6956285-6956304 Msa0833860:CDS 50.0%
CAAGGTAGAGGTTGGGGTTA+CGG + chr5_4:6956337-6956356 Msa0833860:CDS 50.0%
!!! GCGCTCCTTGTTTTCTTGTC+CGG + chr5_4:6956385-6956404 Msa0833860:CDS 50.0%
!! GGGTACCGGACAAGAAAACA+AGG - chr5_4:6956393-6956412 None:intergenic 50.0%
TTGCTTGATCCGGTACTTGC+GGG - chr5_4:6956413-6956432 None:intergenic 50.0%
GTTGCTTGATCCGGTACTTG+CGG - chr5_4:6956414-6956433 None:intergenic 50.0%
ACGACCGCAATCTGAGTCAA+AGG - chr5_4:6956448-6956467 None:intergenic 50.0%
TCAGATTGCGGTCGTGTTTG+TGG + chr5_4:6956453-6956472 Msa0833860:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr5_4:6956654-6956673 None:intergenic 50.0%
AGGGATGGGAAGGTAAGAGA+AGG - chr5_4:6957404-6957423 None:intergenic 50.0%
GTTGATCCTGCCAAGATGCA+TGG + chr5_4:6957555-6957574 Msa0833860:intron 50.0%
AAACTCCCATGCATCTTGGC+AGG - chr5_4:6957564-6957583 None:intergenic 50.0%
GTGGGCCATGAAATGACAAC+TGG + chr5_4:6957698-6957717 Msa0833860:intron 50.0%
ACGCCACGTGTCCCAAAAAA+GGG + chr5_4:6957966-6957985 Msa0833860:intron 50.0%
AGACCGTCATTGATGCTGCT+GGG - chr5_4:6958903-6958922 None:intergenic 50.0%
AAGACCGTCATTGATGCTGC+TGG - chr5_4:6958904-6958923 None:intergenic 50.0%
CGAATGAAGCGGTCGTAGAA+AGG - chr5_4:6958955-6958974 None:intergenic 50.0%
AGTCCTCTCAGTAGTGTCCA+TGG + chr5_4:6959044-6959063 Msa0833860:CDS 50.0%
CAACCATGGACACTACTGAG+AGG - chr5_4:6959050-6959069 None:intergenic 50.0%
CTCAGTAGTGTCCATGGTTG+CGG + chr5_4:6959050-6959069 Msa0833860:CDS 50.0%
CTCAATGGCATCTTTGCCGT+TGG - chr5_4:6959135-6959154 None:intergenic 50.0%
!! CAAGGACAAGAGACTTGCTG+AGG + chr5_4:6959476-6959495 Msa0833860:CDS 50.0%
CCCCTATGCATGGAATGTAG+AGG - chr5_4:6959529-6959548 None:intergenic 50.0%
GGGATGACATGAAGGGCTTG+TGG - chr5_4:6954951-6954970 None:intergenic 55.0%
AGCACCCTCCCTACAACACA+AGG + chr5_4:6955028-6955047 Msa0833860:CDS 55.0%
GCACCCTCCCTACAACACAA+GGG + chr5_4:6955029-6955048 Msa0833860:CDS 55.0%
ATCTGATTACAAGGGCCGGC+CGG + chr5_4:6955069-6955088 Msa0833860:CDS 55.0%
TCCTAATATCATGGCGGCCG+CGG - chr5_4:6955122-6955141 None:intergenic 55.0%
GCACTTTACATCACGGCCCT+CGG + chr5_4:6956148-6956167 Msa0833860:CDS 55.0%
!! TTTTAGACCACCGGTGCCGA+GGG - chr5_4:6956167-6956186 None:intergenic 55.0%
!! ATTTTAGACCACCGGTGCCG+AGG - chr5_4:6956168-6956187 None:intergenic 55.0%
CGTAACCCCAACCTCTACCT+TGG - chr5_4:6956339-6956358 None:intergenic 55.0%
TCGTGTTTGTGGCTGCTTGG+AGG + chr5_4:6956464-6956483 Msa0833860:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr5_4:6956650-6956669 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG + chr5_4:6956849-6956868 Msa0833860:intron 55.0%
GACGCCACGTGTCCCAAAAA+AGG + chr5_4:6957965-6957984 Msa0833860:intron 55.0%
!!! GGTCCCTTTTTTGGGACACG+TGG - chr5_4:6957972-6957991 None:intergenic 55.0%
! TATGAGTGCTGCCGCAACCA+TGG - chr5_4:6959064-6959083 None:intergenic 55.0%
!! GGACAAGAGACTTGCTGAGG+CGG + chr5_4:6959479-6959498 Msa0833860:CDS 55.0%
!! GACAAGAGACTTGCTGAGGC+GGG + chr5_4:6959480-6959499 Msa0833860:CDS 55.0%
TGCTGAGGCGGGCATAGAAT+TGG + chr5_4:6959491-6959510 Msa0833860:CDS 55.0%
! ACCACCGGTTGTGGACCTGT+CGG - chr5_4:6955095-6955114 None:intergenic 60.0%
ACAGGTCCACAACCGGTGGT+TGG + chr5_4:6955095-6955114 Msa0833860:CDS 60.0%
TCCGCGGCCGCCATGATATT+AGG + chr5_4:6955118-6955137 Msa0833860:CDS 60.0%
GCGGCCGCCATGATATTAGG+AGG + chr5_4:6955121-6955140 Msa0833860:CDS 60.0%
TGTCCGGTACCCGCAAGTAC+CGG + chr5_4:6956401-6956420 Msa0833860:CDS 60.0%
GATCCGGTACTTGCGGGTAC+CGG - chr5_4:6956407-6956426 None:intergenic 60.0%
CGGTCGTGTTTGTGGCTGCT+TGG + chr5_4:6956461-6956480 Msa0833860:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr5_4:6956651-6956670 None:intergenic 60.0%
! CACAACCGGTGGTTGGTCCG+CGG + chr5_4:6955102-6955121 Msa0833860:CDS 65.0%
TACATCACGGCCCTCGGCAC+CGG + chr5_4:6956154-6956173 Msa0833860:CDS 65.0%
TTGTGGACCTGTCGGCCGGC+CGG - chr5_4:6955087-6955106 None:intergenic 70.0%
CCGGTTGTGGACCTGTCGGC+CGG - chr5_4:6955091-6955110 None:intergenic 70.0%
CCGGCCGACAGGTCCACAAC+CGG + chr5_4:6955088-6955107 Msa0833860:CDS 70.0%
GCCGACAGGTCCACAACCGG+TGG + chr5_4:6955091-6955110 Msa0833860:CDS 70.0%
! CGCGGACCAACCACCGGTTG+TGG - chr5_4:6955104-6955123 None:intergenic 70.0%
! ATCACGGCCCTCGGCACCGG+TGG + chr5_4:6956157-6956176 Msa0833860:CDS 75.0%
! ACAAGGGCCGGCCGGCCGAC+AGG + chr5_4:6955077-6955096 Msa0833860:CDS 80.0%
! GGCGGCCGCGGACCAACCAC+CGG - chr5_4:6955110-6955129 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6954948 6959884 6954948 ID=Msa0833860;Name=Msa0833860
chr5_4 mRNA 6954948 6959884 6954948 ID=Msa0833860-mRNA-1;Parent=Msa0833860;Name=Msa0833860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=77|1|1|1|1|1|4|339|591
chr5_4 exon 6954948 6955317 6954948 ID=Msa0833860-mRNA-1:exon:3054;Parent=Msa0833860-mRNA-1
chr5_4 exon 6955708 6955747 6955708 ID=Msa0833860-mRNA-1:exon:3055;Parent=Msa0833860-mRNA-1
chr5_4 exon 6956031 6956599 6956031 ID=Msa0833860-mRNA-1:exon:3056;Parent=Msa0833860-mRNA-1
chr5_4 exon 6958672 6959884 6958672 ID=Msa0833860-mRNA-1:exon:3057;Parent=Msa0833860-mRNA-1
chr5_4 five_prime_UTR 6954948 6955024 6954948 ID=Msa0833860-mRNA-1:five_prime_utr;Parent=Msa0833860-mRNA-1
chr5_4 CDS 6955025 6955317 6955025 ID=Msa0833860-mRNA-1:cds;Parent=Msa0833860-mRNA-1
chr5_4 CDS 6955708 6955747 6955708 ID=Msa0833860-mRNA-1:cds;Parent=Msa0833860-mRNA-1
chr5_4 CDS 6956031 6956599 6956031 ID=Msa0833860-mRNA-1:cds;Parent=Msa0833860-mRNA-1
chr5_4 CDS 6958672 6959545 6958672 ID=Msa0833860-mRNA-1:cds;Parent=Msa0833860-mRNA-1
chr5_4 three_prime_UTR 6959546 6959884 6959546 ID=Msa0833860-mRNA-1:three_prime_utr;Parent=Msa0833860-mRNA-1
Gene Sequence

>Msa0833860

ATGAGCACCCTCCCTACAACACAAGGGAAAACTGTCCCAGATGCATCTGATTACAAGGGCCGGCCGGCCGACAGGTCCACAACCGGTGGTTGGTCCGCGGCCGCCATGATATTAGGAGGAGAAGTGATGGAGAGATTGACAACACTCGGCATCGCCGTTAATTTGGTCACATACTTGACCGGTACTATGCATTTGGGCAATGCTGCCTCTGCCAATGTTGTTACTAATTTCTTAGGAACCTCCTTTATGCTCTGTCTATTGGGTGGATTTCTTGCTGATACTTTTCTAGGAAGATATCTCACCATTGCCATCTTTGCAGCTGTCCAAGCAATTGGTGTAACAATATTGACGATATCAACTATAATTCCAAGCCTACATCCACCAAAATGCAAAGAAGACTCTAAATCTTGCATACAAGCAGACAGCAAGCAACTATTGGTGATGTATTTAGCACTTTACATCACGGCCCTCGGCACCGGTGGTCTAAAATCTAGTGTCTCTGGCTTTGGTTCTGATCAATTTGATGATTCTGATGACCAAGAAAAGAAGGGTATGATTAAATTTTTCAGCTGGTTCTATTTTTTCGTAAGCATAGGGTCTTTGGCAGCGGTGACTGTTCTTGTGTACATACAAGATAACCAAGGTAGAGGTTGGGGTTACGGTATTTGTGCGGTCGCAATTGTGGTTGCGCTCCTTGTTTTCTTGTCCGGTACCCGCAAGTACCGGATCAAGCAACTTGTTGGTAGTCCTTTGACTCAGATTGCGGTCGTGTTTGTGGCTGCTTGGAGGAAGAGACACATGCAATTGCCCTCTGATTCTTCATTGCTCTATGAAGAGGATGATATCCTATGTGAAACACCTAAGACCAAGAAGCAAAGGATGCCACATAGCAAACAGTTCCGTTTCTTAGACAAAGCGGCAATCAAAGGCATAGAAAGTGGCAGTGCAATCACAATCAAGGAGAAATGGTATATCTCTACCTTAACAGATGTGGAAGAAGTTAAAATGGTAATAAGGATGTTACCCATATGGGCCACAACCATAATGTTTTGGACAATCCATGCTCAAATGACAACATTCTCAGTATCACAAGCAACAACCATGGATTGTCACATTGGAACATTTCAAATCCCAGCAGCATCAATGACGGTCTTCTTAATCGGAACTATTCTCCTAACTGTTCCTTTCTACGACCGCTTCATTCGACCAGTTGCAAAAAAATTACTAAACAACTCACACGGATTCACCCCTTTACAACGCATTGGTGTTGGTTTAGTCCTCTCAGTAGTGTCCATGGTTGCGGCAGCACTCATAGAAATGAAGCGGTTAAAATTCGCACGATCACATGGTTTTGTAAACGATCCAACGGCAAAGATGCCATTGAGTGTGTTTTGGTTGGTGCCACAATTTTTCTTTGTTGGGTCTGGAGAGGCCTTTATGTATATGGGACAATTAGACTTTTTTCTAAGAGAATGTCCTAAAGGAATGAAAACTATGAGTACAGGGTTGTTCTTGAGCACACTCTCAATAGGGTTTTTCTTTAGCTCATTATTAGTGACTCTAGTGAACAATGTGACGGGTCCAAATAAACCATGGATTGCGGATAATCTTGATCAAGGGAGGCTCTATGATTTTTATTGGCTATTGGCTATGCTAAGTGCTATAAATGTGGTGATATATTTGGCTTGTGCTAAGTGGTATGTGTACAAGGACAAGAGACTTGCTGAGGCGGGCATAGAATTGGAAGAAATAGATGCCTCTACATTCCATGCATAG
Protein sequence

>Msa0833860

MSTLPTTQGKTVPDASDYKGRPADRSTTGGWSAAAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAASANVVTNFLGTSFMLCLLGGFLADTFLGRYLTIAIFAAVQAIGVTILTISTIIPSLHPPKCKEDSKSCIQADSKQLLVMYLALYITALGTGGLKSSVSGFGSDQFDDSDDQEKKGMIKFFSWFYFFVSIGSLAAVTVLVYIQDNQGRGWGYGICAVAIVVALLVFLSGTRKYRIKQLVGSPLTQIAVVFVAAWRKRHMQLPSDSSLLYEEDDILCETPKTKKQRMPHSKQFRFLDKAAIKGIESGSAITIKEKWYISTLTDVEEVKMVIRMLPIWATTIMFWTIHAQMTTFSVSQATTMDCHIGTFQIPAASMTVFLIGTILLTVPFYDRFIRPVAKKLLNNSHGFTPLQRIGVGLVLSVVSMVAAALIEMKRLKFARSHGFVNDPTAKMPLSVFWLVPQFFFVGSGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSIGFFFSSLLVTLVNNVTGPNKPWIADNLDQGRLYDFYWLLAMLSAINVVIYLACAKWYVYKDKRLAEAGIELEEIDASTFHA*