AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796050 MtrunA17_Chr5g0399071 98.477 591 9 0 1 591 1 591 0.0 1199
Msa0796050 MtrunA17_Chr5g0399061 74.443 583 145 3 1 580 1 582 0.0 905
Msa0796050 MtrunA17_Chr4g0056431 71.717 594 164 4 1 591 1 593 0.0 859
Msa0796050 MtrunA17_Chr4g0063591 56.818 572 221 9 11 573 8 562 0.0 572
Msa0796050 MtrunA17_Chr5g0439381 50.624 561 250 5 15 570 18 556 0.0 526
Msa0796050 MtrunA17_Chr4g0005901 45.422 557 292 8 17 570 24 571 1.84e-169 494
Msa0796050 MtrunA17_Chr7g0241741 45.422 557 292 8 17 570 14 561 1.02e-165 484
Msa0796050 MtrunA17_Chr8g0375311 43.525 556 307 4 17 570 32 582 9.87e-164 479
Msa0796050 MtrunA17_Chr3g0104011 44.086 558 300 7 17 570 14 563 5.21e-161 472
Msa0796050 MtrunA17_Chr8g0375291 43.455 550 304 4 17 564 32 576 1.33e-159 469
Msa0796050 MtrunA17_Chr8g0375341 41.711 561 318 5 17 575 32 585 8.69e-158 464
Msa0796050 MtrunA17_Chr8g0375351 41.889 561 317 5 17 575 32 585 1.77e-155 458
Msa0796050 MtrunA17_Chr5g0422881 41.741 563 319 7 25 583 20 577 8.45e-154 454
Msa0796050 MtrunA17_Chr8g0375361 42.986 556 310 4 17 570 31 581 2.10e-152 451
Msa0796050 MtrunA17_Chr8g0375321 40.608 559 323 5 17 573 29 580 6.55e-149 441
Msa0796050 MtrunA17_Chr3g0142101 40.106 566 319 9 17 579 27 575 2.24e-148 440
Msa0796050 MtrunA17_Chr8g0375331 40.806 571 328 6 6 573 4 567 8.62e-147 436
Msa0796050 MtrunA17_Chr7g0261881 40.242 579 330 7 17 590 19 586 1.97e-145 433
Msa0796050 MtrunA17_Chr3g0142091 39.755 571 321 8 14 576 15 570 9.23e-144 428
Msa0796050 MtrunA17_Chr7g0255621 37.786 569 339 6 23 588 18 574 7.12e-142 424
Msa0796050 MtrunA17_Chr7g0261811 40.242 579 326 8 17 588 19 584 1.04e-140 421
Msa0796050 MtrunA17_Chr1g0187241 38.779 557 330 5 17 570 18 566 2.05e-134 404
Msa0796050 MtrunA17_Chr7g0217461 38.291 585 341 6 11 583 10 586 1.99e-132 399
Msa0796050 MtrunA17_Chr1g0166711 39.145 585 340 6 7 588 11 582 1.86e-131 397
Msa0796050 MtrunA17_Chr7g0214461 36.625 557 338 6 14 567 67 611 6.67e-130 394
Msa0796050 MtrunA17_Chr1g0166791 37.743 567 338 7 7 570 10 564 1.42e-129 392
Msa0796050 MtrunA17_Chr7g0255601 37.273 550 339 5 24 570 26 572 2.60e-129 392
Msa0796050 MtrunA17_Chr7g0261771 37.801 582 342 8 7 582 17 584 9.79e-129 390
Msa0796050 MtrunA17_Chr4g0054891 36.380 569 342 7 7 567 92 648 1.76e-128 392
Msa0796050 MtrunA17_Chr1g0166741 38.600 557 324 6 17 570 19 560 3.45e-128 388
Msa0796050 MtrunA17_Chr5g0400371 37.024 578 353 7 11 583 98 669 7.21e-128 390
Msa0796050 MtrunA17_Chr7g0255611 34.729 573 365 7 25 591 29 598 1.49e-127 387
Msa0796050 MtrunA17_Chr3g0133341 37.993 558 324 7 29 578 18 561 2.95e-127 385
Msa0796050 MtrunA17_Chr2g0276751 37.370 578 327 10 3 570 11 563 6.44e-127 385
Msa0796050 MtrunA17_Chr4g0008651 37.919 567 333 11 10 571 18 570 5.18e-126 383
Msa0796050 MtrunA17_Chr7g0240381 37.919 567 327 11 10 571 13 559 1.48e-125 381
Msa0796050 MtrunA17_Chr7g0261791 36.473 584 355 6 5 582 9 582 2.10e-125 382
Msa0796050 MtrunA17_Chr1g0166771 39.417 515 294 6 42 553 8 507 3.19e-125 379
Msa0796050 MtrunA17_Chr7g0218851 35.144 589 357 8 8 587 29 601 8.92e-125 380
Msa0796050 MtrunA17_Chr8g0362711 37.801 582 334 5 4 570 3 571 2.16e-124 378
Msa0796050 MtrunA17_Chr3g0112671 38.137 569 327 10 6 570 13 560 2.95e-124 378
Msa0796050 MtrunA17_Chr7g0261851 37.390 567 340 6 19 580 22 578 9.80e-124 377
Msa0796050 MtrunA17_Chr4g0014841 38.394 573 318 9 11 578 15 557 3.68e-123 374
Msa0796050 MtrunA17_Chr3g0112611 36.189 572 344 9 6 570 12 569 4.71e-123 375
Msa0796050 MtrunA17_Chr4g0014871 37.762 572 324 8 12 578 17 561 1.41e-122 373
Msa0796050 MtrunA17_Chr4g0014791 37.931 580 325 10 4 578 8 557 6.36e-122 371
Msa0796050 MtrunA17_Chr5g0415961 38.850 574 318 10 17 572 16 574 1.32e-120 369
Msa0796050 MtrunA17_Chr1g0213711 35.951 573 349 9 17 586 14 571 2.00e-120 368
Msa0796050 MtrunA17_Chr5g0415791 36.145 581 347 10 1 570 10 577 5.99e-120 368
Msa0796050 MtrunA17_Chr4g0014781 38.146 561 314 9 17 572 21 553 9.09e-120 365
Msa0796050 MtrunA17_Chr1g0193391 36.028 569 328 11 25 583 17 559 2.48e-119 366
Msa0796050 MtrunA17_Chr3g0114501 36.972 568 340 10 17 577 14 570 2.87e-119 365
Msa0796050 MtrunA17_Chr2g0284701 36.842 570 343 11 17 572 24 590 4.59e-119 365
Msa0796050 MtrunA17_Chr7g0271221 36.106 565 335 8 25 584 17 560 4.16e-118 362
Msa0796050 MtrunA17_Chr7g0214731 36.842 570 336 6 22 576 58 618 1.75e-117 362
Msa0796050 MtrunA17_Chr3g0077151 38.380 568 306 11 10 570 13 543 5.37e-117 358
Msa0796050 MtrunA17_Chr4g0014801 37.719 570 322 8 8 572 12 553 5.34e-116 356
Msa0796050 MtrunA17_Chr8g0379971 36.683 597 338 13 17 580 12 601 6.09e-115 355
Msa0796050 MtrunA17_Chr4g0059991 32.810 573 366 7 30 588 27 594 1.09e-114 354
Msa0796050 MtrunA17_Chr8g0353031 36.140 570 331 8 22 578 13 562 6.83e-113 348
Msa0796050 MtrunA17_Chr4g0059971 32.131 582 377 7 2 571 10 585 6.78e-109 339
Msa0796050 MtrunA17_Chr4g0059981 31.156 597 382 10 7 584 7 593 1.10e-108 338
Msa0796050 MtrunA17_Chr1g0166731 40.476 462 263 5 112 570 9 461 1.25e-108 334
Msa0796050 MtrunA17_Chr4g0011471 34.953 535 332 6 40 567 31 556 2.80e-107 334
Msa0796050 MtrunA17_Chr8g0379991 36.505 578 320 12 46 580 1 574 1.42e-106 332
Msa0796050 MtrunA17_Chr8g0362781 33.692 558 350 7 30 574 35 585 4.59e-106 331
Msa0796050 MtrunA17_Chr4g0069581 37.209 559 320 11 43 591 1 538 2.42e-105 328
Msa0796050 MtrunA17_Chr4g0011041 31.843 559 365 5 17 567 28 578 3.02e-105 329
Msa0796050 MtrunA17_Chr7g0261661 38.046 481 278 8 115 588 3 470 1.22e-103 322
Msa0796050 MtrunA17_Chr4g0014861 37.955 440 252 7 138 572 7 430 1.41e-97 304
Msa0796050 MtrunA17_Chr8g0362801 36.034 469 277 9 115 570 3 461 6.12e-95 299
Msa0796050 MtrunA17_Chr3g0082631 37.241 435 265 5 149 576 32 465 7.83e-94 296
Msa0796050 MtrunA17_Chr2g0331471 32.793 555 340 13 29 567 92 629 9.56e-94 302
Msa0796050 MtrunA17_Chr7g0261751 36.626 486 252 7 7 451 17 487 3.31e-93 296
Msa0796050 MtrunA17_Chr4g0003761 30.986 568 361 12 29 583 34 583 1.62e-92 296
Msa0796050 MtrunA17_Chr2g0331511 32.130 554 345 11 29 567 25 562 3.47e-91 293
Msa0796050 MtrunA17_Chr2g0331481 31.304 575 355 14 14 567 11 566 1.13e-90 292
Msa0796050 MtrunA17_Chr8g0390331 32.477 545 346 8 29 564 19 550 1.41e-89 288
Msa0796050 MtrunA17_Chr2g0331521 28.843 579 385 11 25 590 22 586 2.28e-89 288
Msa0796050 MtrunA17_Chr1g0157601 31.826 553 359 11 22 567 12 553 6.96e-89 286
Msa0796050 MtrunA17_Chr2g0325961 33.043 575 347 11 8 571 2 549 2.58e-88 284
Msa0796050 MtrunA17_Chr2g0325951 31.588 573 357 12 8 571 2 548 1.61e-87 281
Msa0796050 MtrunA17_Chr1g0157611 32.491 554 348 12 25 567 16 554 3.87e-84 273
Msa0796050 MtrunA17_Chr4g0060001 29.930 568 376 11 23 580 27 582 1.78e-80 265
Msa0796050 MtrunA17_Chr1g0147631 30.996 542 353 10 29 561 29 558 7.99e-80 263
Msa0796050 MtrunA17_Chr2g0331461 30.594 572 363 15 14 567 11 566 1.51e-79 263
Msa0796050 MtrunA17_Chr7g0240271 29.623 584 382 12 16 585 15 583 4.45e-79 261
Msa0796050 MtrunA17_Chr2g0326211 30.648 571 365 11 8 571 2 548 5.18e-79 259
Msa0796050 MtrunA17_Chr6g0451841 32.007 553 316 12 43 572 23 538 7.19e-79 259
Msa0796050 MtrunA17_Chr7g0261731 39.769 347 190 5 7 349 17 348 2.38e-77 249
Msa0796050 MtrunA17_Chr1g0157621 31.439 528 345 11 46 567 1 517 6.62e-76 251
Msa0796050 MtrunA17_Chr1g0177591 30.054 559 339 15 25 567 42 564 3.41e-75 250
Msa0796050 MtrunA17_Chr7g0240281 29.310 580 387 9 23 587 22 593 7.43e-75 249
Msa0796050 MtrunA17_Chr5g0415841 31.398 465 302 8 115 570 3 459 6.48e-74 243
Msa0796050 MtrunA17_Chr3g0142111 40.614 293 169 3 17 308 38 326 1.08e-73 239
Msa0796050 MtrunA17_Chr7g0235521 31.799 478 303 11 124 589 12 478 4.73e-67 226
Msa0796050 MtrunA17_Chr7g0240181 31.381 478 305 11 124 589 12 478 1.04e-65 222
Msa0796050 MtrunA17_Chr7g0240211 31.381 478 305 11 124 589 12 478 1.21e-65 222
Msa0796050 MtrunA17_Chr7g0240131 31.381 478 305 11 124 589 12 478 3.57e-65 221
Msa0796050 MtrunA17_Chr4g0060071 39.576 283 158 4 292 571 27 299 1.11e-63 211
Msa0796050 MtrunA17_Chr3g0112631 39.310 290 163 7 301 586 3 283 3.53e-61 204
Msa0796050 MtrunA17_Chr1g0177611 30.963 436 270 11 142 567 21 435 3.69e-61 209
Msa0796050 MtrunA17_Chr7g0240151 30.462 476 294 12 124 589 12 460 1.41e-60 208
Msa0796050 MtrunA17_Chr3g0142121 38.462 286 160 7 302 584 11 283 7.72e-59 198
Msa0796050 MtrunA17_Chr1g0177631 31.651 436 267 13 142 567 21 435 1.00e-55 194
Msa0796050 MtrunA17_Chr7g0234181 32.675 456 261 12 115 567 1 413 9.23e-54 188
Msa0796050 MtrunA17_Chr7g0234381 32.969 458 263 12 112 567 3 418 2.70e-53 187
Msa0796050 MtrunA17_Chr7g0234151 32.609 460 262 12 112 567 3 418 1.64e-52 185
Msa0796050 MtrunA17_Chr7g0261721 36.493 211 130 3 375 582 5 214 1.61e-39 144
Msa0796050 MtrunA17_Chr3g0112651 35.149 202 116 5 100 292 9 204 3.14e-31 120
Msa0796050 MtrunA17_Chr2g0326221 31.513 238 134 4 335 571 15 224 9.07e-30 117
Msa0796050 MtrunA17_Chr4g0060061 38.983 118 72 0 137 254 8 125 7.16e-25 100
Msa0796050 MtrunA17_Chr1g0147591 29.000 200 129 5 154 348 9 200 2.46e-21 92.4
Msa0796050 MtrunA17_Chr4g0060051 47.312 93 49 0 17 109 14 106 3.66e-19 84.0
Msa0796050 MtrunA17_Chr7g0261671 45.098 102 52 1 7 108 18 115 5.25e-19 83.2
Msa0796050 MtrunA17_Chr4g0014851 40.741 108 64 0 12 119 17 124 5.47e-18 81.6
Msa0796050 MtrunA17_Chr7g0261831 31.902 163 98 4 257 416 4 156 6.14e-18 82.8
Msa0796050 MtrunA17_Chr1g0166721 35.156 128 73 2 8 130 3 125 2.32e-17 79.3
Msa0796050 MtrunA17_Chr3g0112661 37.500 112 68 2 12 122 17 127 9.25e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796050 AT1G12110.1 62.735 585 210 5 3 583 2 582 0.0 738
Msa0796050 AT2G26690.1 55.950 563 227 6 11 567 8 555 0.0 590
Msa0796050 AT2G26690.2 55.140 535 219 6 39 567 3 522 0.0 551
Msa0796050 AT2G26690.3 54.857 525 216 6 49 567 1 510 0.0 537
Msa0796050 AT3G21670.1 51.510 563 247 6 14 570 16 558 0.0 532
Msa0796050 AT5G01180.2 42.729 557 308 6 17 570 15 563 3.25e-164 480
Msa0796050 AT5G01180.3 42.729 557 308 6 17 570 15 563 3.25e-164 480
Msa0796050 AT5G01180.1 42.729 557 308 6 17 570 15 563 3.25e-164 480
Msa0796050 AT3G54140.1 42.504 567 312 7 7 570 8 563 5.62e-162 475
Msa0796050 AT3G54140.2 42.504 567 312 7 7 570 8 563 5.62e-162 475
Msa0796050 AT2G02040.1 42.218 559 314 5 17 573 31 582 8.39e-158 464
Msa0796050 AT1G68570.1 42.557 571 314 8 7 570 5 568 1.90e-144 431
Msa0796050 AT1G68570.2 43.970 539 290 7 39 570 5 538 4.57e-143 426
Msa0796050 AT1G62200.1 38.938 565 329 6 6 565 30 583 7.07e-135 406
Msa0796050 AT1G62200.3 37.669 592 328 8 6 565 44 626 9.85e-131 397
Msa0796050 AT1G62200.2 37.669 592 328 8 6 565 30 612 1.11e-130 396
Msa0796050 AT1G59740.1 37.633 566 334 7 14 573 28 580 3.56e-130 394
Msa0796050 AT5G46040.1 37.063 572 344 8 17 583 17 577 1.29e-124 379
Msa0796050 AT5G46050.1 36.585 574 346 8 17 585 17 577 4.11e-124 378
Msa0796050 AT2G02020.1 36.813 546 301 6 17 561 32 534 6.66e-124 376
Msa0796050 AT2G37900.1 36.444 568 337 7 8 570 18 566 7.98e-124 377
Msa0796050 AT4G21680.1 37.943 564 330 6 17 569 18 572 1.88e-123 377
Msa0796050 AT3G53960.1 38.004 571 332 10 8 570 17 573 2.74e-123 377
Msa0796050 AT1G32450.1 36.380 558 345 7 17 567 27 581 5.60e-123 376
Msa0796050 AT1G69850.1 37.719 570 338 5 16 571 14 580 1.04e-122 374
Msa0796050 AT5G19640.1 37.201 543 317 7 28 567 60 581 7.97e-120 368
Msa0796050 AT1G33440.1 37.997 579 329 11 17 586 28 585 2.94e-119 366
Msa0796050 AT1G72140.1 36.458 576 319 8 9 573 16 555 8.31e-119 363
Msa0796050 AT3G54450.1 34.568 567 348 7 22 583 7 555 2.65e-118 362
Msa0796050 AT1G27040.2 38.959 557 325 7 16 569 12 556 3.70e-118 362
Msa0796050 AT1G27040.1 38.393 560 324 7 16 569 16 560 3.90e-118 362
Msa0796050 AT2G40460.1 38.028 568 328 10 7 570 8 555 1.22e-116 359
Msa0796050 AT5G13400.1 36.054 588 354 9 9 587 47 621 1.24e-116 360
Msa0796050 AT1G27040.3 39.286 532 308 7 41 569 9 528 6.95e-113 347
Msa0796050 AT1G69870.1 35.159 566 343 11 29 585 53 603 1.62e-112 349
Msa0796050 AT1G22540.1 38.640 559 312 8 17 570 20 552 3.20e-109 339
Msa0796050 AT5G62730.1 35.512 566 333 8 17 573 46 588 1.03e-108 338
Msa0796050 AT2G37900.2 36.016 497 295 6 79 571 11 488 1.05e-108 335
Msa0796050 AT1G72120.1 35.902 571 330 10 8 570 10 552 7.58e-107 333
Msa0796050 AT2G02020.2 34.982 546 290 9 17 561 32 513 2.47e-106 330
Msa0796050 AT1G22570.1 36.316 570 328 10 12 570 15 560 8.41e-106 330
Msa0796050 AT5G62730.2 35.455 550 323 8 33 573 3 529 9.75e-106 329
Msa0796050 AT1G72125.1 34.555 573 339 11 8 570 10 556 9.37e-105 327
Msa0796050 AT1G22550.1 34.851 571 336 9 11 570 14 559 1.09e-104 327
Msa0796050 AT1G72130.1 36.511 556 298 11 25 570 23 533 1.54e-103 323
Msa0796050 AT1G18880.1 31.532 555 358 8 30 571 22 567 5.19e-101 318
Msa0796050 AT5G46050.2 36.134 476 286 8 115 585 3 465 7.36e-98 306
Msa0796050 AT1G22570.2 36.029 544 313 10 38 570 4 523 3.11e-97 306
Msa0796050 AT1G52190.1 31.712 555 360 7 25 567 19 566 5.88e-97 308
Msa0796050 AT5G62680.1 32.500 560 346 11 30 570 46 592 5.44e-95 303
Msa0796050 AT3G47960.1 32.914 556 347 10 30 570 64 608 1.08e-94 303
Msa0796050 AT3G25260.1 33.394 554 317 11 17 567 11 515 2.30e-94 299
Msa0796050 AT3G16180.1 31.866 568 367 9 13 567 5 565 2.60e-94 301
Msa0796050 AT3G25280.1 33.874 555 321 12 16 567 10 521 1.96e-89 286
Msa0796050 AT3G45660.1 31.444 547 344 9 46 590 40 557 1.14e-88 285
Msa0796050 AT3G45660.3 31.444 547 344 9 46 590 40 557 1.14e-88 285
Msa0796050 AT3G45660.2 31.444 547 344 9 46 590 61 578 3.93e-88 285
Msa0796050 AT1G27080.1 32.000 575 356 12 21 585 8 557 4.56e-88 284
Msa0796050 AT3G45710.1 29.331 583 379 12 14 588 3 560 3.45e-83 271
Msa0796050 AT1G69860.1 30.965 549 353 10 30 571 21 550 8.50e-82 267
Msa0796050 AT3G45650.1 29.676 556 362 9 23 573 15 546 2.49e-81 266
Msa0796050 AT3G45680.1 29.277 567 368 10 26 587 19 557 1.82e-79 261
Msa0796050 AT1G72130.2 35.535 439 240 9 141 569 9 414 3.90e-79 256
Msa0796050 AT1G72130.3 35.535 439 240 9 141 569 9 414 3.90e-79 256
Msa0796050 AT5G14940.1 31.627 547 321 11 43 567 23 538 2.71e-78 258
Msa0796050 AT1G27080.2 32.342 538 329 12 58 585 3 515 1.43e-77 255
Msa0796050 AT3G45720.1 28.546 564 365 11 15 570 7 540 2.15e-77 256
Msa0796050 AT3G01350.1 30.900 589 346 11 24 583 4 560 8.50e-77 254
Msa0796050 AT5G28470.2 29.159 559 372 9 25 573 15 559 2.22e-76 253
Msa0796050 AT3G45650.2 28.351 582 362 10 23 573 15 572 2.71e-76 253
Msa0796050 AT3G45700.1 29.160 583 359 15 16 584 4 546 4.05e-75 249
Msa0796050 AT5G28470.1 28.980 559 371 10 25 573 15 557 2.32e-73 245
Msa0796050 AT3G45690.1 28.597 549 324 13 26 571 17 500 7.87e-68 229
Msa0796050 AT5G11570.1 26.816 537 304 10 37 567 23 476 4.67e-50 180
Msa0796050 AT2G38100.2 26.792 530 336 13 55 573 2 490 2.07e-43 162
Msa0796050 AT2G38100.1 26.792 530 336 13 55 573 18 506 4.21e-43 162
Msa0796050 AT2G38100.3 26.792 530 336 13 55 573 24 512 4.35e-43 162

Find 167 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGCAATCCATGGTTTATT+TGG 0.146472 5_3:+8056871 None:intergenic
CTCCTTTATGCTCTGTCTAT+TGG 0.183421 5_3:-8060541 Msa0796050:CDS
TTAGAGTCTTCTTTGCATTT+TGG 0.212251 5_3:+8059937 None:intergenic
ATGTGGCATCCTTTGCTTCT+TGG 0.223376 5_3:+8059453 None:intergenic
TCAGATTGCGGTCGTGTTTA+TGG 0.224116 5_3:-8059563 Msa0796050:CDS
ACTCGGCATCGCCGTTAATT+TGG 0.225881 5_3:-8060637 Msa0796050:CDS
TGAAGCTGTTTATTTGAAAA+AGG 0.227154 5_3:+8056436 None:intergenic
TCCTTTATGCTCTGTCTATT+GGG 0.231899 5_3:-8060540 Msa0796050:CDS
TGGAGAGGCCTTTATGTATA+TGG 0.257387 5_3:-8057028 Msa0796050:CDS
ATCCTTTGCTTCTTGGTCTT+AGG 0.272928 5_3:+8059460 None:intergenic
AATGTTGTTACTAATTTCTT+AGG 0.273061 5_3:-8060567 Msa0796050:CDS
CTTGACCGGTACTATGCATT+TGG 0.289091 5_3:-8060607 Msa0796050:CDS
ATGGATTGTCCAAAACATTA+TGG 0.311360 5_3:+8057413 None:intergenic
CATTATGGTTGTGGCCCATA+TGG 0.330752 5_3:+8057428 None:intergenic
TATAAATGTGGTGATATATT+TGG 0.333642 5_3:-8056791 Msa0796050:CDS
TTTCGTAAGCATAGGGTCTT+TGG 0.338269 5_3:-8059737 Msa0796050:CDS
AAATCTAGTGTCTCTGGCTT+TGG 0.347040 5_3:-8059832 Msa0796050:CDS
GGGCCACAACCATAATGTTT+TGG 0.348324 5_3:-8057422 Msa0796050:CDS
AGATGTGGAAGAAGTTAAAA+TGG 0.350382 5_3:-8057466 Msa0796050:CDS
TTGCTTGATCCGGTATTTGC+GGG 0.367014 5_3:+8059606 None:intergenic
AAGAAGTTAAAATGGTAATA+AGG 0.380191 5_3:-8057458 Msa0796050:CDS
TTCTTGAGCACACTCTCAAT+AGG 0.380892 5_3:-8056943 Msa0796050:CDS
AGATGCCATTGAGTGTGTTT+TGG 0.390364 5_3:-8057080 Msa0796050:CDS
TGCTGAGGCGGGCATAGAAT+TGG 0.392359 5_3:-8056731 Msa0796050:CDS
CCCTTGTAATCAGATGCATC+TGG 0.396538 5_3:+8060744 None:intergenic
CAAGGTAGAGGTTGGGGTTA+CGG 0.404173 5_3:-8059679 Msa0796050:CDS
AACTTCTTCCACATCTGTTA+AGG 0.406906 5_3:+8057473 None:intergenic
TCTTGAGCACACTCTCAATA+GGG 0.411173 5_3:-8056942 Msa0796050:CDS
TCCGCGGCCGCCATGATATT+AGG 0.415550 5_3:-8060687 Msa0796050:CDS
TAATAAGGATGTTACCCATA+TGG 0.419503 5_3:-8057443 Msa0796050:CDS
CTCAGTAGTGTCCATGGTTG+CGG 0.432988 5_3:-8057172 Msa0796050:CDS
CCCAGATGCATCTGATTACA+AGG 0.434717 5_3:-8060745 Msa0796050:CDS
CAATCACAATCAAGGAGAAA+TGG 0.435261 5_3:-8057506 Msa0796050:CDS
GTTTAATGGATATCTATTGA+TGG 0.439450 5_3:+8056458 None:intergenic
GAGATTATCTTACAATTGCT+TGG 0.439655 5_3:+8060278 None:intergenic
TTGACCGGTACTATGCATTT+GGG 0.441330 5_3:-8060606 Msa0796050:CDS
TCAATGACGGTCTTCTTAAT+CGG 0.441765 5_3:-8057312 Msa0796050:CDS
TGCCACATAGCAAACAGTTC+CGG 0.441974 5_3:-8059438 Msa0796050:intron
CTAGGGGAATTAAGTGAGTT+GGG 0.443425 5_3:+8060837 None:intergenic
GGTATGTGAAATGTGAAGCT+AGG 0.447060 5_3:+8060819 None:intergenic
TACATCACGGCCCTCGGCAC+CGG 0.448076 5_3:-8059862 Msa0796050:CDS
GCCTCTACATTCCATGCATA+GGG 0.450174 5_3:-8056697 Msa0796050:exon
TCCTAATATCATGGCGGCCG+CGG 0.451996 5_3:+8060686 None:intergenic
ACAAGGGCCGGCTGGCCGAC+AGG 0.455828 5_3:-8060728 Msa0796050:CDS
GGTCGTAGAAAGGAACAGTT+AGG 0.460679 5_3:+8057280 None:intergenic
TTTCCCTTGTGTTGTAGGGA+GGG 0.463914 5_3:+8060773 None:intergenic
AGCAGACAGCAAGCAACTAT+TGG 0.464045 5_3:-8059902 Msa0796050:CDS
AGATAACCAAGGTAGAGGTT+GGG 0.464346 5_3:-8059686 Msa0796050:CDS
AATTTGGTCACATACTTGAC+CGG 0.465748 5_3:-8060621 Msa0796050:CDS
GGAATGAAAACTATGAGTAC+AGG 0.465946 5_3:-8056970 Msa0796050:CDS
TAATTGTCCCATATACATAA+AGG 0.467859 5_3:+8057020 None:intergenic
CTCAATGGCATCTTTGCCGT+TGG 0.474314 5_3:+8057090 None:intergenic
TGCTTGGACAGCTGCAAAGA+TGG 0.474359 5_3:+8060294 None:intergenic
AAGACCGTCATTGATGCTGC+TGG 0.476879 5_3:+8057321 None:intergenic
TGTCCGGTACCCGCAAATAC+CGG 0.478280 5_3:-8059615 Msa0796050:CDS
CGCGGACCAACCACCGGTTG+TGG 0.478323 5_3:+8060704 None:intergenic
CACTTCTCCTCCTAATATCA+TGG 0.480052 5_3:+8060677 None:intergenic
GGTCTAAAATCTAGTGTCTC+TGG 0.480893 5_3:-8059838 Msa0796050:CDS
ACCCAATAGACAGAGCATAA+AGG 0.482538 5_3:+8060539 None:intergenic
TACCGGATCAAGCAACTTGT+TGG 0.482750 5_3:-8059598 Msa0796050:CDS
TTCTGATGACCAAGAAAAGA+AGG 0.483279 5_3:-8059791 Msa0796050:CDS
GCTAGGGGAATTAAGTGAGT+TGG 0.483496 5_3:+8060836 None:intergenic
TTGAAATTCGCACGATCACA+TGG 0.486954 5_3:-8057126 Msa0796050:CDS
CCTTTACAACGCATTGGTGT+TGG 0.489948 5_3:-8057204 Msa0796050:CDS
ATCTGATTACAAGGGCCGGC+TGG 0.490136 5_3:-8060736 Msa0796050:CDS
CGAATGAAGCGGTCGTAGAA+AGG 0.491283 5_3:+8057270 None:intergenic
AATAAGGATGTTACCCATAT+GGG 0.493344 5_3:-8057442 Msa0796050:CDS
GGAGAGGCCTTTATGTATAT+GGG 0.496953 5_3:-8057027 Msa0796050:CDS
AGTCCTCTCAGTAGTGTCCA+TGG 0.500956 5_3:-8057178 Msa0796050:CDS
TATTTGTGCGGTCGCAATTG+TGG 0.501020 5_3:-8059656 Msa0796050:CDS
TTGTGGACCTGTCGGCCAGC+CGG 0.501509 5_3:+8060721 None:intergenic
CAAGTATGTGACCAAATTAA+CGG 0.502223 5_3:+8060626 None:intergenic
TAGGAGGAGAAGTGATGGAG+AGG 0.502676 5_3:-8060668 Msa0796050:CDS
AAGATAACCAAGGTAGAGGT+TGG 0.503461 5_3:-8059687 Msa0796050:CDS
TTCACTCCTTTACAACGCAT+TGG 0.504068 5_3:-8057210 Msa0796050:CDS
TGTCCAAAACATTATGGTTG+TGG 0.504094 5_3:+8057419 None:intergenic
TTTATGCTCTGTCTATTGGG+TGG 0.509907 5_3:-8060537 Msa0796050:CDS
CGGTCGTGTTTATGGCTGCT+TGG 0.510720 5_3:-8059555 Msa0796050:CDS
TACCAACAAGTTGCTTGATC+CGG 0.510732 5_3:+8059596 None:intergenic
TCGTGTTTATGGCTGCTTGG+AGG 0.512042 5_3:-8059552 Msa0796050:CDS
ATATTTCAACAAACATTATG+TGG 0.512875 5_3:-8056519 Msa0796050:three_prime_UTR
TACCGGAACTGTTTGCTATG+TGG 0.513274 5_3:+8059436 None:intergenic
CCAACACCAATGCGTTGTAA+AGG 0.515233 5_3:+8057204 None:intergenic
GTATGTGAAATGTGAAGCTA+GGG 0.516552 5_3:+8060820 None:intergenic
ACCAACCAAAACACACTCAA+TGG 0.517641 5_3:+8057075 None:intergenic
GTTGCTTGATCCGGTATTTG+CGG 0.518244 5_3:+8059605 None:intergenic
TTCTTCATTGCTCTATGAAG+AGG 0.518830 5_3:-8059503 Msa0796050:CDS
AGTGAGTTGGGATGACATGA+AGG 0.519676 5_3:+8060849 None:intergenic
TTTCTTTGTTGGGTCTGGAG+AGG 0.523163 5_3:-8057043 Msa0796050:CDS
CTGGCCGACAGGTCCACAAC+CGG 0.525288 5_3:-8060717 Msa0796050:CDS
GCACTTTACATCACGGCCCT+CGG 0.525416 5_3:-8059868 Msa0796050:CDS
GACAAGAGACTTGCTGAGGC+GGG 0.533846 5_3:-8056742 Msa0796050:CDS
ATTGCGGATAATCTTGATCA+AGG 0.535890 5_3:-8056856 Msa0796050:CDS
GATAACCAAGGTAGAGGTTG+GGG 0.537914 5_3:-8059685 Msa0796050:CDS
TGGTCTTAGGTGTTTCACAT+AGG 0.541798 5_3:+8059473 None:intergenic
CCTTGTAATCAGATGCATCT+GGG 0.541992 5_3:+8060745 None:intergenic
GGCGGCCGCGGACCAACCAC+CGG 0.543833 5_3:+8060698 None:intergenic
ATCACGGCCCTCGGCACCGG+TGG 0.545009 5_3:-8059859 Msa0796050:CDS
ATTATGGTTGTGGCCCATAT+GGG 0.546937 5_3:+8057429 None:intergenic
CGTAACCCCAACCTCTACCT+TGG 0.549093 5_3:+8059680 None:intergenic
TGGCAGTGCAATCACAATCA+AGG 0.551937 5_3:-8057514 Msa0796050:CDS
GATCCGGTATTTGCGGGTAC+CGG 0.554792 5_3:+8059612 None:intergenic
TTAGACAAAGCGGCAATCAA+AGG 0.554882 5_3:-8057546 Msa0796050:CDS
GATATTAGGAGGAGAAGTGA+TGG 0.558978 5_3:-8060673 Msa0796050:CDS
TATGAGTGCTGCCGCAACCA+TGG 0.562291 5_3:+8057161 None:intergenic
CACCTAAGACCAAGAAGCAA+AGG 0.564356 5_3:-8059462 Msa0796050:CDS
TGCCTCTACATTCCATGCAT+AGG 0.564381 5_3:-8056698 Msa0796050:exon
ACAACCATGGATTGTCACAT+TGG 0.565357 5_3:-8057357 Msa0796050:CDS
AAGCATAGGGTCTTTGGCAG+CGG 0.567922 5_3:-8059731 Msa0796050:CDS
ATGCATCTGATTACAAGGGC+CGG 0.568601 5_3:-8060740 Msa0796050:CDS
AAAAGACAAAGACTCTACTA+GGG 0.570115 5_3:+8056620 None:intergenic
TGTTCCAATGTGACAATCCA+TGG 0.571949 5_3:+8057353 None:intergenic
ACGACCGCAATCTGAGTCAA+AGG 0.573004 5_3:+8059571 None:intergenic
TCCAAATAAACCATGGATTG+CGG 0.574971 5_3:-8056872 Msa0796050:CDS
GGACAAGAGACTTGCTGAGG+CGG 0.576506 5_3:-8056743 Msa0796050:CDS
TCAAGATTATCCGCAATCCA+TGG 0.577407 5_3:+8056862 None:intergenic
CACAACCGGTGGTTGGTCCG+CGG 0.578072 5_3:-8060703 Msa0796050:CDS
TAAGAAATTAGTAACAACAT+TGG 0.578419 5_3:+8060569 None:intergenic
GCAATCAAAGGCATAGAAAG+TGG 0.579246 5_3:-8057534 Msa0796050:CDS
TATCTCTACCTTAACAGATG+TGG 0.585721 5_3:-8057481 Msa0796050:CDS
ATTAGTAACAACATTGGCAG+AGG 0.586147 5_3:+8060575 None:intergenic
TTGCGACTGGTCGAATGAAG+CGG 0.586629 5_3:+8057259 None:intergenic
AGCACCCTCCCTACAACACA+AGG 0.588695 5_3:-8060777 Msa0796050:CDS
TAGTCCTTTGACTCAGATTG+CGG 0.589065 5_3:-8059575 Msa0796050:CDS
AGACCGTCATTGATGCTGCT+GGG 0.589637 5_3:+8057322 None:intergenic
TGCTAAGTGGTATGTGTACA+AGG 0.589791 5_3:-8056764 Msa0796050:CDS
ACAGGTCCACAACCGGTGGT+TGG 0.591605 5_3:-8060710 Msa0796050:CDS
AGAATGTTGTCATTTGAGCA+TGG 0.600950 5_3:+8057394 None:intergenic
ATGGAGAGGTTGACAACACT+CGG 0.600987 5_3:-8060654 Msa0796050:CDS
ATTGCCCAAATGCATAGTAC+CGG 0.603355 5_3:+8060602 None:intergenic
ATACAAGATAACCAAGGTAG+AGG 0.606582 5_3:-8059691 Msa0796050:CDS
ACCACCGGTTGTGGACCTGT+CGG 0.608628 5_3:+8060713 None:intergenic
TATATTTGGCTTGTGCTAAG+TGG 0.609309 5_3:-8056777 Msa0796050:CDS
GGGATGACATGAAGGGCTTG+TGG 0.613318 5_3:+8060857 None:intergenic
GTATTTAGCACTTTACATCA+CGG 0.617039 5_3:-8059875 Msa0796050:CDS
GTGAGTTGGGATGACATGAA+GGG 0.620522 5_3:+8060850 None:intergenic
TTGCGGATAATCTTGATCAA+GGG 0.620665 5_3:-8056855 Msa0796050:CDS
GACTCTAGTGAACAATGTGA+CGG 0.622141 5_3:-8056896 Msa0796050:CDS
ACTCTAGTGAACAATGTGAC+GGG 0.623386 5_3:-8056895 Msa0796050:CDS
TCTGATGACCAAGAAAAGAA+GGG 0.624905 5_3:-8059790 Msa0796050:CDS
CGGATAATCTTGATCAAGGG+AGG 0.625811 5_3:-8056852 Msa0796050:CDS
ATAGAGCAATGAAGAATCAG+AGG 0.625823 5_3:+8059510 None:intergenic
GCCGACAGGTCCACAACCGG+TGG 0.626538 5_3:-8060714 Msa0796050:CDS
CCTCTACATTCCATGCATAG+GGG 0.630402 5_3:-8056696 Msa0796050:exon
CAGCACTCATAGAAATGAAG+CGG 0.633945 5_3:-8057149 Msa0796050:CDS
CCCCTATGCATGGAATGTAG+AGG 0.633977 5_3:+8056696 None:intergenic
GAATGAAAACTATGAGTACA+GGG 0.638544 5_3:-8056969 Msa0796050:CDS
CTCATATTGCAAGATATGAG+AGG 0.641438 5_3:+8060798 None:intergenic
GACAGCTGCAAAGATGGCAA+TGG 0.645630 5_3:+8060300 None:intergenic
TAGAGCAATGAAGAATCAGA+GGG 0.646481 5_3:+8059511 None:intergenic
AATCCCAGCAGCATCAATGA+CGG 0.648376 5_3:-8057325 Msa0796050:CDS
TGACGGGTCCAAATAAACCA+TGG 0.653922 5_3:-8056879 Msa0796050:CDS
GCGGCCGCCATGATATTAGG+AGG 0.655145 5_3:-8060684 Msa0796050:CDS
TATGCTAAGTGCTATAAATG+TGG 0.657537 5_3:-8056803 Msa0796050:CDS
AAACAGTTTCTTAGACAAAG+CGG 0.657671 5_3:-8057556 Msa0796050:intron
AGTATCACAAGCAACAACCA+TGG 0.663164 5_3:-8057370 Msa0796050:CDS
TTGGGGTTACGGTATTTGTG+CGG 0.666939 5_3:-8059668 Msa0796050:CDS
CAATAGACAGAGCATAAAGG+AGG 0.685001 5_3:+8060542 None:intergenic
AAATTACTAAACAACTCACA+CGG 0.686574 5_3:-8057234 Msa0796050:CDS
TTCTCCTCCTAATATCATGG+CGG 0.687568 5_3:+8060680 None:intergenic
GGGTACCGGACAAGAAAACA+AGG 0.694489 5_3:+8059626 None:intergenic
CCAGATGCATCTGATTACAA+GGG 0.704068 5_3:-8060744 Msa0796050:CDS
CAAGGACAAGAGACTTGCTG+AGG 0.709240 5_3:-8056746 Msa0796050:CDS
CAACCATGGACACTACTGAG+AGG 0.733442 5_3:+8057175 None:intergenic
TATGTGAAATGTGAAGCTAG+GGG 0.736577 5_3:+8060821 None:intergenic
GCACCCTCCCTACAACACAA+GGG 0.747611 5_3:-8060776 Msa0796050:CDS
GTGTACATACAAGATAACCA+AGG 0.754045 5_3:-8059697 Msa0796050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTCATTTATTTATTTAT+TGG - chr5_3:8058071-8058090 Msa0796050:intron 10.0%
!! TTTATATAATAGTATAGTAT+TGG - chr5_3:8058806-8058825 Msa0796050:intron 10.0%
!!! AATTGCAAATTTTTTTAATA+AGG + chr5_3:8058882-8058901 None:intergenic 10.0%
!!! ATTAAAAAAATTTGCAATTT+TGG - chr5_3:8058883-8058902 Msa0796050:intron 10.0%
!!! TTTTGCAATTTTTTTTAATA+GGG - chr5_3:8059056-8059075 Msa0796050:intron 10.0%
!!! TTTTAAAAAGAAAATACAAA+TGG + chr5_3:8060679-8060698 None:intergenic 10.0%
!! AAAAAATTCCTTTCTTATTA+TGG - chr5_3:8056754-8056773 Msa0796050:CDS 15.0%
!!! TTTTATTTGAAAACAAAAGT+TGG - chr5_3:8058248-8058267 Msa0796050:intron 15.0%
!!! TAAACCTTTATAATTTGTTT+GGG + chr5_3:8058431-8058450 None:intergenic 15.0%
!! ATAAAGACATTTATCATTAT+TGG - chr5_3:8058593-8058612 Msa0796050:intron 15.0%
!! TAAAGACATTTATCATTATT+GGG - chr5_3:8058594-8058613 Msa0796050:intron 15.0%
!!! CTTTTGCAATTTTTTTTAAT+AGG - chr5_3:8059055-8059074 Msa0796050:intron 15.0%
!!! TTTGCAATTTTTTTTAATAG+GGG - chr5_3:8059057-8059076 Msa0796050:intron 15.0%
!! AATCTACTTAATATACTTTA+AGG + chr5_3:8059361-8059380 None:intergenic 15.0%
!!! TTTATTAATTTGTAATTCAG+TGG + chr5_3:8059486-8059505 None:intergenic 15.0%
!! AATTAATTCATTAATCTTCA+AGG + chr5_3:8059625-8059644 None:intergenic 15.0%
!! TTTATTTGAAAAAGGTTTAA+TGG + chr5_3:8060776-8060795 None:intergenic 15.0%
!! TAAGAAATTAGTAACAACAT+TGG + chr5_3:8056651-8056670 None:intergenic 20.0%
!! AATGTTGTTACTAATTTCTT+AGG - chr5_3:8056650-8056669 Msa0796050:three_prime_UTR 20.0%
!!! TTAGTTTTCCATAATAAGAA+AGG + chr5_3:8056765-8056784 None:intergenic 20.0%
!! AAAACCAATCATAATTAATG+TGG + chr5_3:8056827-8056846 None:intergenic 20.0%
!! AAAATAGTACTAGAAAACAA+TGG + chr5_3:8056985-8057004 None:intergenic 20.0%
!!! TTTTTGAGGATTTAATTCAA+AGG + chr5_3:8057157-8057176 None:intergenic 20.0%
!! AATATCAAAGAACTAAACAA+CGG + chr5_3:8057190-8057209 None:intergenic 20.0%
!! ACGAATGTATGTTTATATTA+GGG - chr5_3:8057211-8057230 Msa0796050:CDS 20.0%
!! AGAATGAATAGAAAATTTAC+CGG + chr5_3:8057801-8057820 None:intergenic 20.0%
!!! TTATAATTTGTTTGGGAATT+GGG + chr5_3:8058424-8058443 None:intergenic 20.0%
!!! TTTATAATTTGTTTGGGAAT+TGG + chr5_3:8058425-8058444 None:intergenic 20.0%
!! AATTCCCAAACAAATTATAA+AGG - chr5_3:8058424-8058443 Msa0796050:intron 20.0%
!!! CTAAACCTTTATAATTTGTT+TGG + chr5_3:8058432-8058451 None:intergenic 20.0%
!! ATGTAGAAAGAACAAATTAT+TGG - chr5_3:8058626-8058645 Msa0796050:intron 20.0%
!! TGTAGAAAGAACAAATTATT+GGG - chr5_3:8058627-8058646 Msa0796050:intron 20.0%
!!! GTAACATTTTAAAACTTAGA+GGG + chr5_3:8058849-8058868 None:intergenic 20.0%
!!! GTTTTAAAATGTTACGATTT+TGG - chr5_3:8058854-8058873 Msa0796050:intron 20.0%
!!! TTGCAATTTTTTTTAATAGG+GGG - chr5_3:8059058-8059077 Msa0796050:intron 20.0%
!! AAGTTTCAAAAATCTAACTA+AGG - chr5_3:8059254-8059273 Msa0796050:intron 20.0%
!! CATTAACTAAAAACAAAGAA+AGG + chr5_3:8059295-8059314 None:intergenic 20.0%
!! TATTAAGTAGATTGATTGAA+AGG - chr5_3:8059368-8059387 Msa0796050:intron 20.0%
!! ATTAAGTAGATTGATTGAAA+GGG - chr5_3:8059369-8059388 Msa0796050:intron 20.0%
!! AAGAAGTTAAAATGGTAATA+AGG - chr5_3:8059759-8059778 Msa0796050:CDS 20.0%
!! TATAAATGTGGTGATATATT+TGG - chr5_3:8060426-8060445 Msa0796050:intron 20.0%
!! ATATTTCAACAAACATTATG+TGG - chr5_3:8060698-8060717 Msa0796050:CDS 20.0%
!!! ATACTTTCTTTTGTTACATT+TGG + chr5_3:8060855-8060874 None:intergenic 20.0%
! TGATCCACATTAATTATGAT+TGG - chr5_3:8056820-8056839 Msa0796050:CDS 25.0%
! ATATCTGTCAAACAAAGAAT+GGG + chr5_3:8056893-8056912 None:intergenic 25.0%
!! ACGGTATGATTAAATTTTTG+AGG + chr5_3:8057171-8057190 None:intergenic 25.0%
! GACGAATGTATGTTTATATT+AGG - chr5_3:8057210-8057229 Msa0796050:CDS 25.0%
!!! GTATGATTAAATTTTTCAGC+TGG - chr5_3:8057449-8057468 Msa0796050:CDS 25.0%
!!! TTCTATTTTTTCGTAAGCAT+AGG - chr5_3:8057472-8057491 Msa0796050:CDS 25.0%
!!! TCTATTTTTTCGTAAGCATA+GGG - chr5_3:8057473-8057492 Msa0796050:CDS 25.0%
! ATTAAGCTACTTAAACTAAG+AGG + chr5_3:8057941-8057960 None:intergenic 25.0%
!! TGACATAGTTGATATATTTG+TGG - chr5_3:8058176-8058195 Msa0796050:intron 25.0%
! TGACTCAAAATTGAATAGTT+TGG - chr5_3:8058203-8058222 Msa0796050:intron 25.0%
!!! TATAATTTGTTTGGGAATTG+GGG + chr5_3:8058423-8058442 None:intergenic 25.0%
! TCTTTATTGTTAGTTGCATA+CGG + chr5_3:8058580-8058599 None:intergenic 25.0%
! ATAAACCACACATTATTAGT+TGG + chr5_3:8058764-8058783 None:intergenic 25.0%
! TTCTCTCAAAAAATAATGTG+TGG - chr5_3:8058783-8058802 Msa0796050:intron 25.0%
!!! CGTAACATTTTAAAACTTAG+AGG + chr5_3:8058850-8058869 None:intergenic 25.0%
! TTTACAAAAAGTTGCGATTA+TGG + chr5_3:8058961-8058980 None:intergenic 25.0%
! AGAACATATTTCTCTAAACA+TGG - chr5_3:8059026-8059045 Msa0796050:intron 25.0%
! GAACATATTTCTCTAAACAT+GGG - chr5_3:8059027-8059046 Msa0796050:intron 25.0%
! AACATATTTCTCTAAACATG+GGG - chr5_3:8059028-8059047 Msa0796050:intron 25.0%
!! GTTTCAAAATGTTGCAATTT+TGG + chr5_3:8059084-8059103 None:intergenic 25.0%
!!! ATTGCAACATTTTGAAACTT+AGG - chr5_3:8059086-8059105 Msa0796050:intron 25.0%
!!! TTGCAACATTTTGAAACTTA+GGG - chr5_3:8059087-8059106 Msa0796050:intron 25.0%
! GTAAAAGCAATAATTTCGAA+AGG + chr5_3:8059209-8059228 None:intergenic 25.0%
!!! TTTAGTAATTTTTTTGCGAC+TGG + chr5_3:8059974-8059993 None:intergenic 25.0%
! AAATTACTAAACAACTCACA+CGG - chr5_3:8059983-8060002 Msa0796050:CDS 25.0%
! TAATTGTCCCATATACATAA+AGG + chr5_3:8060200-8060219 None:intergenic 25.0%
!!! TTTTTAAGAGAATGTCCTAA+AGG - chr5_3:8060226-8060245 Msa0796050:intron 25.0%
!!! CTATGATTTTTATTGGCTAT+TGG - chr5_3:8060390-8060409 Msa0796050:intron 25.0%
!! AACAGAAGAAAAAAGTTGAT+TGG + chr5_3:8060554-8060573 None:intergenic 25.0%
!! GTCTTTTTATAAAGAGTGAT+TGG - chr5_3:8060613-8060632 Msa0796050:CDS 25.0%
!! GTTTAATGGATATCTATTGA+TGG + chr5_3:8060762-8060781 None:intergenic 25.0%
! TGAAGCTGTTTATTTGAAAA+AGG + chr5_3:8060784-8060803 None:intergenic 25.0%
CAAGTATGTGACCAAATTAA+CGG + chr5_3:8056594-8056613 None:intergenic 30.0%
! TTTCTTGCTGATACTTTTCT+AGG - chr5_3:8056704-8056723 Msa0796050:CDS 30.0%
GATATCTGTCAAACAAAGAA+TGG + chr5_3:8056894-8056913 None:intergenic 30.0%
GAGATTATCTTACAATTGCT+TGG + chr5_3:8056942-8056961 None:intergenic 30.0%
GTCAATCAATTATAATCGTC+AGG + chr5_3:8057106-8057125 None:intergenic 30.0%
! TTAGAGTCTTCTTTGCATTT+TGG + chr5_3:8057283-8057302 None:intergenic 30.0%
GTATTTAGCACTTTACATCA+CGG - chr5_3:8057342-8057361 Msa0796050:CDS 30.0%
! TAATCATACCCTTCTTTTCT+TGG + chr5_3:8057438-8057457 None:intergenic 30.0%
AAAGTTTCTCTTCCAATGAA+TGG - chr5_3:8057963-8057982 Msa0796050:intron 30.0%
ACTCAAATTGTTCCATTCAT+TGG + chr5_3:8057978-8057997 None:intergenic 30.0%
GTATAGACAATCTTCTCTAA+TGG + chr5_3:8058147-8058166 None:intergenic 30.0%
AAAGAAAAGAGAGGAGAAAA+TGG + chr5_3:8058397-8058416 None:intergenic 30.0%
GGAATATACTGTATATGTCA+AGG - chr5_3:8058485-8058504 Msa0796050:intron 30.0%
ATATACTGTATATGTCAAGG+AGG - chr5_3:8058488-8058507 Msa0796050:intron 30.0%
TATACTGTATATGTCAAGGA+GGG - chr5_3:8058489-8058508 Msa0796050:intron 30.0%
TTGTTCTTTCTACATCAAGT+GGG + chr5_3:8058621-8058640 None:intergenic 30.0%
TTTGTTCTTTCTACATCAAG+TGG + chr5_3:8058622-8058641 None:intergenic 30.0%
AAATGACAACTGGGTTATTA+AGG - chr5_3:8058676-8058695 Msa0796050:intron 30.0%
AGAAACCAACTAATAATGTG+TGG - chr5_3:8058756-8058775 Msa0796050:intron 30.0%
! CAACTTTTTGTAAAGATGTG+AGG - chr5_3:8058967-8058986 Msa0796050:intron 30.0%
! CATAAGGGAAATATGCTTTT+TGG + chr5_3:8058993-8059012 None:intergenic 30.0%
CATATTTCCCTTATGTTAGA+GGG - chr5_3:8058998-8059017 Msa0796050:intron 30.0%
ACATATTTCTCTAAACATGG+GGG - chr5_3:8059029-8059048 Msa0796050:intron 30.0%
CGATACGCAAAAAATACTAT+AGG + chr5_3:8059131-8059150 None:intergenic 30.0%
GATATCTTGCAAATCTCAAA+AGG + chr5_3:8059172-8059191 None:intergenic 30.0%
!!! AGGTAATTTTGATTGATGAG+AGG + chr5_3:8059341-8059360 None:intergenic 30.0%
TTGAAAGGGTCAATAAACTT+CGG - chr5_3:8059383-8059402 Msa0796050:intron 30.0%
TCTTCAAGGTAATAACAAAG+AGG + chr5_3:8059611-8059630 None:intergenic 30.0%
AAACAGTTTCTTAGACAAAG+CGG - chr5_3:8059661-8059680 Msa0796050:CDS 30.0%
AGATGTGGAAGAAGTTAAAA+TGG - chr5_3:8059751-8059770 Msa0796050:CDS 30.0%
TAATAAGGATGTTACCCATA+TGG - chr5_3:8059774-8059793 Msa0796050:CDS 30.0%
AATAAGGATGTTACCCATAT+GGG - chr5_3:8059775-8059794 Msa0796050:CDS 30.0%
! ATGGATTGTCCAAAACATTA+TGG + chr5_3:8059807-8059826 None:intergenic 30.0%
! TGCCACAATTTTTCTTTGTT+GGG - chr5_3:8060164-8060183 Msa0796050:intron 30.0%
! CTCATAGTTTTCATTCCTTT+AGG + chr5_3:8060244-8060263 None:intergenic 30.0%
GAATGAAAACTATGAGTACA+GGG - chr5_3:8060248-8060267 Msa0796050:intron 30.0%
TATGCTAAGTGCTATAAATG+TGG - chr5_3:8060414-8060433 Msa0796050:intron 30.0%
AAAAGACAAAGACTCTACTA+GGG + chr5_3:8060600-8060619 None:intergenic 30.0%
AAAAAGACAAAGACTCTACT+AGG + chr5_3:8060601-8060620 None:intergenic 30.0%
! CTTTCTTTTGTTACATTTGG+AGG + chr5_3:8060852-8060871 None:intergenic 30.0%
TATGTGAAATGTGAAGCTAG+GGG + chr5_3:8056399-8056418 None:intergenic 35.0%
GTATGTGAAATGTGAAGCTA+GGG + chr5_3:8056400-8056419 None:intergenic 35.0%
CTCATATTGCAAGATATGAG+AGG + chr5_3:8056422-8056441 None:intergenic 35.0%
AATTTGGTCACATACTTGAC+CGG - chr5_3:8056596-8056615 Msa0796050:three_prime_UTR 35.0%
ATTAGTAACAACATTGGCAG+AGG + chr5_3:8056645-8056664 None:intergenic 35.0%
TCCTTTATGCTCTGTCTATT+GGG - chr5_3:8056677-8056696 Msa0796050:three_prime_UTR 35.0%
!! TTGCTGATACTTTTCTAGGA+AGG - chr5_3:8056708-8056727 Msa0796050:CDS 35.0%
ATTAACTCTCAGAAATCACG+AGG + chr5_3:8056854-8056873 None:intergenic 35.0%
TTCTGATGACCAAGAAAAGA+AGG - chr5_3:8057426-8057445 Msa0796050:CDS 35.0%
TCTGATGACCAAGAAAAGAA+GGG - chr5_3:8057427-8057446 Msa0796050:CDS 35.0%
GTGTACATACAAGATAACCA+AGG - chr5_3:8057520-8057539 Msa0796050:CDS 35.0%
ATACAAGATAACCAAGGTAG+AGG - chr5_3:8057526-8057545 Msa0796050:CDS 35.0%
TAGAGCAATGAAGAATCAGA+GGG + chr5_3:8057709-8057728 None:intergenic 35.0%
ATAGAGCAATGAAGAATCAG+AGG + chr5_3:8057710-8057729 None:intergenic 35.0%
TTCTTCATTGCTCTATGAAG+AGG - chr5_3:8057714-8057733 Msa0796050:intron 35.0%
!! GACACTATGTTAACTTGCTA+TGG - chr5_3:8057897-8057916 Msa0796050:intron 35.0%
TTGCTATGGTTATGTCTTGT+TGG - chr5_3:8057911-8057930 Msa0796050:intron 35.0%
TGGTTTCCAATCATGAAGAT+CGG + chr5_3:8058127-8058146 None:intergenic 35.0%
AAAGAGAGGAGAAAATGGAA+GGG + chr5_3:8058392-8058411 None:intergenic 35.0%
AAAAGAGAGGAGAAAATGGA+AGG + chr5_3:8058393-8058412 None:intergenic 35.0%
ATACTGTATATGTCAAGGAG+GGG - chr5_3:8058490-8058509 Msa0796050:intron 35.0%
TGTTCTTTCTACATCAAGTG+GGG + chr5_3:8058620-8058639 None:intergenic 35.0%
! GGTGCCACATATTTAATAGT+GGG - chr5_3:8058648-8058667 Msa0796050:intron 35.0%
ATGGCCCACTATTAAATATG+TGG + chr5_3:8058655-8058674 None:intergenic 35.0%
! ATAACCCAGTTGTCATTTCA+TGG + chr5_3:8058674-8058693 None:intergenic 35.0%
GATCATTTGCTCCTTAATCA+TGG - chr5_3:8058698-8058717 Msa0796050:intron 35.0%
!!! TCAACAATTTTGGGACGAAA+GGG + chr5_3:8058910-8058929 None:intergenic 35.0%
GCATATTTCCCTTATGTTAG+AGG - chr5_3:8058997-8059016 Msa0796050:intron 35.0%
! CTTTTGACCCTCTAACATAA+GGG + chr5_3:8059008-8059027 None:intergenic 35.0%
! TCTTTTGACCCTCTAACATA+AGG + chr5_3:8059009-8059028 None:intergenic 35.0%
!!! GTATTTTTTGCGTATCGCTT+TGG - chr5_3:8059134-8059153 Msa0796050:intron 35.0%
! GTCAAAAAAGAAGTATGCCT+TGG - chr5_3:8059314-8059333 Msa0796050:intron 35.0%
ATATGCATATTGCTCCTCTT+TGG - chr5_3:8059562-8059581 Msa0796050:CDS 35.0%
CATATTAAGCAACACCAAAG+AGG + chr5_3:8059579-8059598 None:intergenic 35.0%
CAATCACAATCAAGGAGAAA+TGG - chr5_3:8059711-8059730 Msa0796050:CDS 35.0%
TATCTCTACCTTAACAGATG+TGG - chr5_3:8059736-8059755 Msa0796050:CDS 35.0%
AACTTCTTCCACATCTGTTA+AGG + chr5_3:8059747-8059766 None:intergenic 35.0%
TGTCCAAAACATTATGGTTG+TGG + chr5_3:8059801-8059820 None:intergenic 35.0%
! AGAATGTTGTCATTTGAGCA+TGG + chr5_3:8059826-8059845 None:intergenic 35.0%
TCAATGACGGTCTTCTTAAT+CGG - chr5_3:8059905-8059924 Msa0796050:CDS 35.0%
!!! TGGTTTTGTAAACGATCCAA+CGG - chr5_3:8060111-8060130 Msa0796050:intron 35.0%
! GTGCCACAATTTTTCTTTGT+TGG - chr5_3:8060163-8060182 Msa0796050:intron 35.0%
GACCCAACAAAGAAAAATTG+TGG + chr5_3:8060169-8060188 None:intergenic 35.0%
! CAATTTTTCTTTGTTGGGTC+TGG - chr5_3:8060169-8060188 Msa0796050:intron 35.0%
GGAATGAAAACTATGAGTAC+AGG - chr5_3:8060247-8060266 Msa0796050:intron 35.0%
! TCCAAATAAACCATGGATTG+CGG - chr5_3:8060345-8060364 Msa0796050:intron 35.0%
ATTGCGGATAATCTTGATCA+AGG - chr5_3:8060361-8060380 Msa0796050:intron 35.0%
TTGCGGATAATCTTGATCAA+GGG - chr5_3:8060362-8060381 Msa0796050:intron 35.0%
! GGAGGCTCTATGATTTTTAT+TGG - chr5_3:8060383-8060402 Msa0796050:intron 35.0%
!! TATATTTGGCTTGTGCTAAG+TGG - chr5_3:8060440-8060459 Msa0796050:intron 35.0%
CTAGGGGAATTAAGTGAGTT+GGG + chr5_3:8056383-8056402 None:intergenic 40.0%
GGTATGTGAAATGTGAAGCT+AGG + chr5_3:8056401-8056420 None:intergenic 40.0%
! CAGTTTTCCCTTGTGTTGTA+GGG + chr5_3:8056451-8056470 None:intergenic 40.0%
! ACAGTTTTCCCTTGTGTTGT+AGG + chr5_3:8056452-8056471 None:intergenic 40.0%
CCTTGTAATCAGATGCATCT+GGG + chr5_3:8056475-8056494 None:intergenic 40.0%
CCAGATGCATCTGATTACAA+GGG - chr5_3:8056473-8056492 Msa0796050:three_prime_UTR 40.0%
TTCTCCTCCTAATATCATGG+CGG + chr5_3:8056540-8056559 None:intergenic 40.0%
CACTTCTCCTCCTAATATCA+TGG + chr5_3:8056543-8056562 None:intergenic 40.0%
GATATTAGGAGGAGAAGTGA+TGG - chr5_3:8056544-8056563 Msa0796050:three_prime_UTR 40.0%
TTGACCGGTACTATGCATTT+GGG - chr5_3:8056611-8056630 Msa0796050:three_prime_UTR 40.0%
ATTGCCCAAATGCATAGTAC+CGG + chr5_3:8056618-8056637 None:intergenic 40.0%
CAATAGACAGAGCATAAAGG+AGG + chr5_3:8056678-8056697 None:intergenic 40.0%
CTCCTTTATGCTCTGTCTAT+TGG - chr5_3:8056676-8056695 Msa0796050:three_prime_UTR 40.0%
ACCCAATAGACAGAGCATAA+AGG + chr5_3:8056681-8056700 None:intergenic 40.0%
TTTATGCTCTGTCTATTGGG+TGG - chr5_3:8056680-8056699 Msa0796050:exon 40.0%
!! CTTTGCATTTTGGTGGATGT+AGG + chr5_3:8057273-8057292 None:intergenic 40.0%
! GAGTCTTCTTTGCATTTTGG+TGG + chr5_3:8057280-8057299 None:intergenic 40.0%
! GACACTAGATTTTAGACCAC+CGG + chr5_3:8057377-8057396 None:intergenic 40.0%
! GGTCTAAAATCTAGTGTCTC+TGG - chr5_3:8057379-8057398 Msa0796050:CDS 40.0%
! AAATCTAGTGTCTCTGGCTT+TGG - chr5_3:8057385-8057404 Msa0796050:CDS 40.0%
TTTCGTAAGCATAGGGTCTT+TGG - chr5_3:8057480-8057499 Msa0796050:CDS 40.0%
AAGATAACCAAGGTAGAGGT+TGG - chr5_3:8057530-8057549 Msa0796050:CDS 40.0%
AGATAACCAAGGTAGAGGTT+GGG - chr5_3:8057531-8057550 Msa0796050:CDS 40.0%
TACCAACAAGTTGCTTGATC+CGG + chr5_3:8057624-8057643 None:intergenic 40.0%
TAGTCCTTTGACTCAGATTG+CGG - chr5_3:8057642-8057661 Msa0796050:intron 40.0%
! TGGTCTTAGGTGTTTCACAT+AGG + chr5_3:8057747-8057766 None:intergenic 40.0%
! ATCCTTTGCTTCTTGGTCTT+AGG + chr5_3:8057760-8057779 None:intergenic 40.0%
TCAATCCCGATCTTCATGAT+TGG - chr5_3:8058118-8058137 Msa0796050:intron 40.0%
GGTTTCCAATCATGAAGATC+GGG + chr5_3:8058126-8058145 None:intergenic 40.0%
AAGGTAAGAGAAGGAAAAGG+TGG + chr5_3:8058364-8058383 None:intergenic 40.0%
TTGGGGAGTAAAGAAAAGAG+AGG + chr5_3:8058406-8058425 None:intergenic 40.0%
GTCAACACAAAGTGATAGAG+TGG - chr5_3:8058464-8058483 Msa0796050:intron 40.0%
AATGAAACTCCCATGCATCT+TGG + chr5_3:8058537-8058556 None:intergenic 40.0%
! GGGTGCCACATATTTAATAG+TGG - chr5_3:8058647-8058666 Msa0796050:intron 40.0%
TGGACTTGTCACCATGATTA+AGG + chr5_3:8058712-8058731 None:intergenic 40.0%
TTAACTATTAAGCTCGTGCG+TGG + chr5_3:8058732-8058751 None:intergenic 40.0%
!!! CAACAATTTTGGGACGAAAG+GGG + chr5_3:8058909-8058928 None:intergenic 40.0%
!!! CTCAACAATTTTGGGACGAA+AGG + chr5_3:8058911-8058930 None:intergenic 40.0%
! GGCGTCTTCTCAACAATTTT+GGG + chr5_3:8058919-8058938 None:intergenic 40.0%
! TGGCGTCTTCTCAACAATTT+TGG + chr5_3:8058920-8058939 None:intergenic 40.0%
!!! GCGATTATGGTCCCTTTTTT+GGG + chr5_3:8058948-8058967 None:intergenic 40.0%
!!! TGCGATTATGGTCCCTTTTT+TGG + chr5_3:8058949-8058968 None:intergenic 40.0%
TCGAAAGGAGATAGACTAGA+TGG + chr5_3:8059194-8059213 None:intergenic 40.0%
TTTGATTGATGAGAGGTCCA+AGG + chr5_3:8059334-8059353 None:intergenic 40.0%
TTAGACAAAGCGGCAATCAA+AGG - chr5_3:8059671-8059690 Msa0796050:CDS 40.0%
! GCAATCAAAGGCATAGAAAG+TGG - chr5_3:8059683-8059702 Msa0796050:CDS 40.0%
ATTATGGTTGTGGCCCATAT+GGG + chr5_3:8059791-8059810 None:intergenic 40.0%
AGTATCACAAGCAACAACCA+TGG - chr5_3:8059847-8059866 Msa0796050:CDS 40.0%
! ACAACCATGGATTGTCACAT+TGG - chr5_3:8059860-8059879 Msa0796050:CDS 40.0%
TGTTCCAATGTGACAATCCA+TGG + chr5_3:8059867-8059886 None:intergenic 40.0%
TTCACTCCTTTACAACGCAT+TGG - chr5_3:8060007-8060026 Msa0796050:intron 40.0%
CAGCACTCATAGAAATGAAG+CGG - chr5_3:8060068-8060087 Msa0796050:intron 40.0%
TTGAAATTCGCACGATCACA+TGG - chr5_3:8060091-8060110 Msa0796050:intron 40.0%
! AGATGCCATTGAGTGTGTTT+TGG - chr5_3:8060137-8060156 Msa0796050:intron 40.0%
ACCAACCAAAACACACTCAA+TGG + chr5_3:8060145-8060164 None:intergenic 40.0%
TGGAGAGGCCTTTATGTATA+TGG - chr5_3:8060189-8060208 Msa0796050:intron 40.0%
GGAGAGGCCTTTATGTATAT+GGG - chr5_3:8060190-8060209 Msa0796050:intron 40.0%
TTCTTGAGCACACTCTCAAT+AGG - chr5_3:8060274-8060293 Msa0796050:intron 40.0%
TCTTGAGCACACTCTCAATA+GGG - chr5_3:8060275-8060294 Msa0796050:intron 40.0%
GACTCTAGTGAACAATGTGA+CGG - chr5_3:8060321-8060340 Msa0796050:intron 40.0%
ACTCTAGTGAACAATGTGAC+GGG - chr5_3:8060322-8060341 Msa0796050:intron 40.0%
TCCGCAATCCATGGTTTATT+TGG + chr5_3:8060349-8060368 None:intergenic 40.0%
TCAAGATTATCCGCAATCCA+TGG + chr5_3:8060358-8060377 None:intergenic 40.0%
TGCTAAGTGGTATGTGTACA+AGG - chr5_3:8060453-8060472 Msa0796050:intron 40.0%
! GTGAGTTGGGATGACATGAA+GGG + chr5_3:8056370-8056389 None:intergenic 45.0%
! AGTGAGTTGGGATGACATGA+AGG + chr5_3:8056371-8056390 None:intergenic 45.0%
GCTAGGGGAATTAAGTGAGT+TGG + chr5_3:8056384-8056403 None:intergenic 45.0%
TTTCCCTTGTGTTGTAGGGA+GGG + chr5_3:8056447-8056466 None:intergenic 45.0%
! TTTTCCCTTGTGTTGTAGGG+AGG + chr5_3:8056448-8056467 None:intergenic 45.0%
CCCAGATGCATCTGATTACA+AGG - chr5_3:8056472-8056491 Msa0796050:three_prime_UTR 45.0%
CCCTTGTAATCAGATGCATC+TGG + chr5_3:8056476-8056495 None:intergenic 45.0%
ATGCATCTGATTACAAGGGC+CGG - chr5_3:8056477-8056496 Msa0796050:three_prime_UTR 45.0%
ATGGAGAGGTTGACAACACT+CGG - chr5_3:8056563-8056582 Msa0796050:three_prime_UTR 45.0%
CTTGACCGGTACTATGCATT+TGG - chr5_3:8056610-8056629 Msa0796050:three_prime_UTR 45.0%
!! CATTTTGGTGGATGTAGGCT+TGG + chr5_3:8057268-8057287 None:intergenic 45.0%
AGCAGACAGCAAGCAACTAT+TGG - chr5_3:8057315-8057334 Msa0796050:CDS 45.0%
GATAACCAAGGTAGAGGTTG+GGG - chr5_3:8057532-8057551 Msa0796050:CDS 45.0%
TTGGGGTTACGGTATTTGTG+CGG - chr5_3:8057549-8057568 Msa0796050:CDS 45.0%
TATTTGTGCGGTCGCAATTG+TGG - chr5_3:8057561-8057580 Msa0796050:intron 45.0%
TTGCTTGATCCGGTATTTGC+GGG + chr5_3:8057614-8057633 None:intergenic 45.0%
GTTGCTTGATCCGGTATTTG+CGG + chr5_3:8057615-8057634 None:intergenic 45.0%
TACCGGATCAAGCAACTTGT+TGG - chr5_3:8057619-8057638 Msa0796050:intron 45.0%
TCAGATTGCGGTCGTGTTTA+TGG - chr5_3:8057654-8057673 Msa0796050:intron 45.0%
CACCTAAGACCAAGAAGCAA+AGG - chr5_3:8057755-8057774 Msa0796050:intron 45.0%
ATGTGGCATCCTTTGCTTCT+TGG + chr5_3:8057767-8057786 None:intergenic 45.0%
TGCCACATAGCAAACAGTTC+CGG - chr5_3:8057779-8057798 Msa0796050:intron 45.0%
!! TACCGGAACTGTTTGCTATG+TGG + chr5_3:8057784-8057803 None:intergenic 45.0%
GGGAAGGTAAGAGAAGGAAA+AGG + chr5_3:8058367-8058386 None:intergenic 45.0%
AGAAAATGGAAGGGATGGGA+AGG + chr5_3:8058383-8058402 None:intergenic 45.0%
GAGGAGAAAATGGAAGGGAT+GGG + chr5_3:8058387-8058406 None:intergenic 45.0%
AGAGGAGAAAATGGAAGGGA+TGG + chr5_3:8058388-8058407 None:intergenic 45.0%
GGCAGGATCAACATCGAATA+GGG + chr5_3:8058516-8058535 None:intergenic 45.0%
TGGCAGGATCAACATCGAAT+AGG + chr5_3:8058517-8058536 None:intergenic 45.0%
TTGATCCTGCCAAGATGCAT+GGG - chr5_3:8058525-8058544 Msa0796050:intron 45.0%
AGTTGCATACGGCTCTCAAT+TGG + chr5_3:8058569-8058588 None:intergenic 45.0%
TGGGCCATGAAATGACAACT+GGG - chr5_3:8058667-8058686 Msa0796050:intron 45.0%
TGGCAGTGCAATCACAATCA+AGG - chr5_3:8059703-8059722 Msa0796050:CDS 45.0%
CATTATGGTTGTGGCCCATA+TGG + chr5_3:8059792-8059811 None:intergenic 45.0%
! GGGCCACAACCATAATGTTT+TGG - chr5_3:8059795-8059814 Msa0796050:CDS 45.0%
AATCCCAGCAGCATCAATGA+CGG - chr5_3:8059892-8059911 Msa0796050:CDS 45.0%
GGTCGTAGAAAGGAACAGTT+AGG + chr5_3:8059940-8059959 None:intergenic 45.0%
CCAACACCAATGCGTTGTAA+AGG + chr5_3:8060016-8060035 None:intergenic 45.0%
! CCTTTACAACGCATTGGTGT+TGG - chr5_3:8060013-8060032 Msa0796050:intron 45.0%
!!! GCCATTGAGTGTGTTTTGGT+TGG - chr5_3:8060141-8060160 Msa0796050:intron 45.0%
TTTCTTTGTTGGGTCTGGAG+AGG - chr5_3:8060174-8060193 Msa0796050:intron 45.0%
! TGACGGGTCCAAATAAACCA+TGG - chr5_3:8060338-8060357 Msa0796050:intron 45.0%
CGGATAATCTTGATCAAGGG+AGG - chr5_3:8060365-8060384 Msa0796050:intron 45.0%
TGCCTCTACATTCCATGCAT+AGG - chr5_3:8060519-8060538 Msa0796050:CDS 45.0%
GCCTCTACATTCCATGCATA+GGG - chr5_3:8060520-8060539 Msa0796050:CDS 45.0%
CCTCTACATTCCATGCATAG+GGG - chr5_3:8060521-8060540 Msa0796050:CDS 45.0%
TGGTGAAAAACCCCTATGCA+TGG + chr5_3:8060534-8060553 None:intergenic 45.0%
!!! TTTTTAACATAATATAATTT+CGG - chr5_3:8058327-8058346 Msa0796050:intron 5.0%
! TAGGAGGAGAAGTGATGGAG+AGG - chr5_3:8056549-8056568 Msa0796050:three_prime_UTR 50.0%
ACTCGGCATCGCCGTTAATT+TGG - chr5_3:8056580-8056599 Msa0796050:three_prime_UTR 50.0%
GACAGCTGCAAAGATGGCAA+TGG + chr5_3:8056920-8056939 None:intergenic 50.0%
TGCTTGGACAGCTGCAAAGA+TGG + chr5_3:8056926-8056945 None:intergenic 50.0%
AAGCATAGGGTCTTTGGCAG+CGG - chr5_3:8057486-8057505 Msa0796050:CDS 50.0%
CAAGGTAGAGGTTGGGGTTA+CGG - chr5_3:8057538-8057557 Msa0796050:CDS 50.0%
!!! GCGCTCCTTGTTTTCTTGTC+CGG - chr5_3:8057586-8057605 Msa0796050:intron 50.0%
!! GGGTACCGGACAAGAAAACA+AGG + chr5_3:8057594-8057613 None:intergenic 50.0%
ACGACCGCAATCTGAGTCAA+AGG + chr5_3:8057649-8057668 None:intergenic 50.0%
TCGTGTTTATGGCTGCTTGG+AGG - chr5_3:8057665-8057684 Msa0796050:intron 50.0%
AGGGATGGGAAGGTAAGAGA+AGG + chr5_3:8058373-8058392 None:intergenic 50.0%
GTTGATCCTGCCAAGATGCA+TGG - chr5_3:8058524-8058543 Msa0796050:intron 50.0%
AAACTCCCATGCATCTTGGC+AGG + chr5_3:8058533-8058552 None:intergenic 50.0%
GTGGGCCATGAAATGACAAC+TGG - chr5_3:8058666-8058685 Msa0796050:intron 50.0%
ACGCCACGTGTCCCAAAAAA+GGG - chr5_3:8058934-8058953 Msa0796050:intron 50.0%
AGACCGTCATTGATGCTGCT+GGG + chr5_3:8059898-8059917 None:intergenic 50.0%
AAGACCGTCATTGATGCTGC+TGG + chr5_3:8059899-8059918 None:intergenic 50.0%
CGAATGAAGCGGTCGTAGAA+AGG + chr5_3:8059950-8059969 None:intergenic 50.0%
! TTGCGACTGGTCGAATGAAG+CGG + chr5_3:8059961-8059980 None:intergenic 50.0%
AGTCCTCTCAGTAGTGTCCA+TGG - chr5_3:8060039-8060058 Msa0796050:intron 50.0%
CAACCATGGACACTACTGAG+AGG + chr5_3:8060045-8060064 None:intergenic 50.0%
CTCAGTAGTGTCCATGGTTG+CGG - chr5_3:8060045-8060064 Msa0796050:intron 50.0%
CTCAATGGCATCTTTGCCGT+TGG + chr5_3:8060130-8060149 None:intergenic 50.0%
!! CAAGGACAAGAGACTTGCTG+AGG - chr5_3:8060471-8060490 Msa0796050:intron 50.0%
CCCCTATGCATGGAATGTAG+AGG + chr5_3:8060524-8060543 None:intergenic 50.0%
GGGATGACATGAAGGGCTTG+TGG + chr5_3:8056363-8056382 None:intergenic 55.0%
AGCACCCTCCCTACAACACA+AGG - chr5_3:8056440-8056459 Msa0796050:three_prime_UTR 55.0%
GCACCCTCCCTACAACACAA+GGG - chr5_3:8056441-8056460 Msa0796050:three_prime_UTR 55.0%
ATCTGATTACAAGGGCCGGC+TGG - chr5_3:8056481-8056500 Msa0796050:three_prime_UTR 55.0%
TCCTAATATCATGGCGGCCG+CGG + chr5_3:8056534-8056553 None:intergenic 55.0%
GCACTTTACATCACGGCCCT+CGG - chr5_3:8057349-8057368 Msa0796050:CDS 55.0%
!! TTTTAGACCACCGGTGCCGA+GGG + chr5_3:8057368-8057387 None:intergenic 55.0%
!! ATTTTAGACCACCGGTGCCG+AGG + chr5_3:8057369-8057388 None:intergenic 55.0%
CGTAACCCCAACCTCTACCT+TGG + chr5_3:8057540-8057559 None:intergenic 55.0%
TGTCCGGTACCCGCAAATAC+CGG - chr5_3:8057602-8057621 Msa0796050:intron 55.0%
GATCCGGTATTTGCGGGTAC+CGG + chr5_3:8057608-8057627 None:intergenic 55.0%
CGGTCGTGTTTATGGCTGCT+TGG - chr5_3:8057662-8057681 Msa0796050:intron 55.0%
GACGCCACGTGTCCCAAAAA+AGG - chr5_3:8058933-8058952 Msa0796050:intron 55.0%
!!! GGTCCCTTTTTTGGGACACG+TGG + chr5_3:8058940-8058959 None:intergenic 55.0%
! TATGAGTGCTGCCGCAACCA+TGG + chr5_3:8060059-8060078 None:intergenic 55.0%
!! GGACAAGAGACTTGCTGAGG+CGG - chr5_3:8060474-8060493 Msa0796050:intron 55.0%
!! GACAAGAGACTTGCTGAGGC+GGG - chr5_3:8060475-8060494 Msa0796050:intron 55.0%
TGCTGAGGCGGGCATAGAAT+TGG - chr5_3:8060486-8060505 Msa0796050:intron 55.0%
! ACCACCGGTTGTGGACCTGT+CGG + chr5_3:8056507-8056526 None:intergenic 60.0%
ACAGGTCCACAACCGGTGGT+TGG - chr5_3:8056507-8056526 Msa0796050:three_prime_UTR 60.0%
TCCGCGGCCGCCATGATATT+AGG - chr5_3:8056530-8056549 Msa0796050:three_prime_UTR 60.0%
GCGGCCGCCATGATATTAGG+AGG - chr5_3:8056533-8056552 Msa0796050:three_prime_UTR 60.0%
TTGTGGACCTGTCGGCCAGC+CGG + chr5_3:8056499-8056518 None:intergenic 65.0%
CTGGCCGACAGGTCCACAAC+CGG - chr5_3:8056500-8056519 Msa0796050:three_prime_UTR 65.0%
! CACAACCGGTGGTTGGTCCG+CGG - chr5_3:8056514-8056533 Msa0796050:three_prime_UTR 65.0%
TACATCACGGCCCTCGGCAC+CGG - chr5_3:8057355-8057374 Msa0796050:CDS 65.0%
GCCGACAGGTCCACAACCGG+TGG - chr5_3:8056503-8056522 Msa0796050:three_prime_UTR 70.0%
! CGCGGACCAACCACCGGTTG+TGG + chr5_3:8056516-8056535 None:intergenic 70.0%
! ACAAGGGCCGGCTGGCCGAC+AGG - chr5_3:8056489-8056508 Msa0796050:three_prime_UTR 75.0%
! ATCACGGCCCTCGGCACCGG+TGG - chr5_3:8057358-8057377 Msa0796050:CDS 75.0%
! GGCGGCCGCGGACCAACCAC+CGG + chr5_3:8056522-8056541 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8056360 8060879 8056360 ID=Msa0796050;Name=Msa0796050
chr5_3 mRNA 8056360 8060879 8056360 ID=Msa0796050-mRNA-1;Parent=Msa0796050;Name=Msa0796050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=77|1|1|1|1|1|4|339|591
chr5_3 exon 8056360 8057572 8056360 ID=Msa0796050-mRNA-1:exon:3328;Parent=Msa0796050-mRNA-1
chr5_3 exon 8059439 8060007 8059439 ID=Msa0796050-mRNA-1:exon:3327;Parent=Msa0796050-mRNA-1
chr5_3 exon 8060291 8060330 8060291 ID=Msa0796050-mRNA-1:exon:3326;Parent=Msa0796050-mRNA-1
chr5_3 exon 8060510 8060879 8060510 ID=Msa0796050-mRNA-1:exon:3325;Parent=Msa0796050-mRNA-1
chr5_3 five_prime_UTR 8060803 8060879 8060803 ID=Msa0796050-mRNA-1:five_prime_utr;Parent=Msa0796050-mRNA-1
chr5_3 CDS 8060510 8060802 8060510 ID=Msa0796050-mRNA-1:cds;Parent=Msa0796050-mRNA-1
chr5_3 CDS 8060291 8060330 8060291 ID=Msa0796050-mRNA-1:cds;Parent=Msa0796050-mRNA-1
chr5_3 CDS 8059439 8060007 8059439 ID=Msa0796050-mRNA-1:cds;Parent=Msa0796050-mRNA-1
chr5_3 CDS 8056699 8057572 8056699 ID=Msa0796050-mRNA-1:cds;Parent=Msa0796050-mRNA-1
chr5_3 three_prime_UTR 8056360 8056698 8056360 ID=Msa0796050-mRNA-1:three_prime_utr;Parent=Msa0796050-mRNA-1
Gene Sequence

>Msa0796050

ATGAGCACCCTCCCTACAACACAAGGGAAAACTGTCCCAGATGCATCTGATTACAAGGGCCGGCTGGCCGACAGGTCCACAACCGGTGGTTGGTCCGCGGCCGCCATGATATTAGGAGGAGAAGTGATGGAGAGGTTGACAACACTCGGCATCGCCGTTAATTTGGTCACATACTTGACCGGTACTATGCATTTGGGCAATGCTGCCTCTGCCAATGTTGTTACTAATTTCTTAGGAACCTCCTTTATGCTCTGTCTATTGGGTGGATTTCTTGCTGATACTTTTCTAGGAAGATATCTCACCATTGCCATCTTTGCAGCTGTCCAAGCAATTGGTGTAACAATATTGACGATATCAACTATAATTCCAAGCCTACATCCACCAAAATGCAAAGAAGACTCTAAATCTTGCATACAAGCAGACAGCAAGCAACTATTGGTGATGTATTTAGCACTTTACATCACGGCCCTCGGCACCGGTGGTCTAAAATCTAGTGTCTCTGGCTTTGGTTCTGATCAATTTGATGATTCTGATGACCAAGAAAAGAAGGGTATGATTAAATTTTTCAGCTGGTTCTATTTTTTCGTAAGCATAGGGTCTTTGGCAGCGGTGACTGTTCTTGTGTACATACAAGATAACCAAGGTAGAGGTTGGGGTTACGGTATTTGTGCGGTCGCAATTGTGGTTGCGCTCCTTGTTTTCTTGTCCGGTACCCGCAAATACCGGATCAAGCAACTTGTTGGTAGTCCTTTGACTCAGATTGCGGTCGTGTTTATGGCTGCTTGGAGGAAGAGACACATGCAATTGCCCTCTGATTCTTCATTGCTCTATGAAGAGGATGATATCCTATGTGAAACACCTAAGACCAAGAAGCAAAGGATGCCACATAGCAAACAGTTCCGTTTCTTAGACAAAGCGGCAATCAAAGGCATAGAAAGTGGCAGTGCAATCACAATCAAGGAGAAATGGTATATCTCTACCTTAACAGATGTGGAAGAAGTTAAAATGGTAATAAGGATGTTACCCATATGGGCCACAACCATAATGTTTTGGACAATCCATGCTCAAATGACAACATTCTCAGTATCACAAGCAACAACCATGGATTGTCACATTGGAACATTTCAAATCCCAGCAGCATCAATGACGGTCTTCTTAATCGGAACTATTCTCCTAACTGTTCCTTTCTACGACCGCTTCATTCGACCAGTCGCAAAAAAATTACTAAACAACTCACACGGATTCACTCCTTTACAACGCATTGGTGTTGGTTTAGTCCTCTCAGTAGTGTCCATGGTTGCGGCAGCACTCATAGAAATGAAGCGGTTGAAATTCGCACGATCACATGGTTTTGTAAACGATCCAACGGCAAAGATGCCATTGAGTGTGTTTTGGTTGGTGCCACAATTTTTCTTTGTTGGGTCTGGAGAGGCCTTTATGTATATGGGACAATTAGACTTTTTTTTAAGAGAATGTCCTAAAGGAATGAAAACTATGAGTACAGGGTTGTTCTTGAGCACACTCTCAATAGGGTTTTTCTTTAGCTCATTATTAGTGACTCTAGTGAACAATGTGACGGGTCCAAATAAACCATGGATTGCGGATAATCTTGATCAAGGGAGGCTCTATGATTTTTATTGGCTATTGGCTATGCTAAGTGCTATAAATGTGGTGATATATTTGGCTTGTGCTAAGTGGTATGTGTACAAGGACAAGAGACTTGCTGAGGCGGGCATAGAATTGGAAGAAATAGATGCCTCTACATTCCATGCATAG
Protein sequence

>Msa0796050

MSTLPTTQGKTVPDASDYKGRLADRSTTGGWSAAAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAASANVVTNFLGTSFMLCLLGGFLADTFLGRYLTIAIFAAVQAIGVTILTISTIIPSLHPPKCKEDSKSCIQADSKQLLVMYLALYITALGTGGLKSSVSGFGSDQFDDSDDQEKKGMIKFFSWFYFFVSIGSLAAVTVLVYIQDNQGRGWGYGICAVAIVVALLVFLSGTRKYRIKQLVGSPLTQIAVVFMAAWRKRHMQLPSDSSLLYEEDDILCETPKTKKQRMPHSKQFRFLDKAAIKGIESGSAITIKEKWYISTLTDVEEVKMVIRMLPIWATTIMFWTIHAQMTTFSVSQATTMDCHIGTFQIPAASMTVFLIGTILLTVPFYDRFIRPVAKKLLNNSHGFTPLQRIGVGLVLSVVSMVAAALIEMKRLKFARSHGFVNDPTAKMPLSVFWLVPQFFFVGSGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSIGFFFSSLLVTLVNNVTGPNKPWIADNLDQGRLYDFYWLLAMLSAINVVIYLACAKWYVYKDKRLAEAGIELEEIDASTFHA*