Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361230 | XP_003611009.1 | 86.957 | 92 | 7 | 2 | 1 | 88 | 1 | 91 | 1.40e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361230 | sp|Q84RD1|ETC2_ARATH | 62.651 | 83 | 24 | 2 | 6 | 88 | 17 | 92 | 2.14e-27 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361230 | G7KAM1 | 86.957 | 92 | 7 | 2 | 1 | 88 | 1 | 91 | 6.69e-47 | 154 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1361230 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011440 | Msa1361230 | -0.814939 | 1.192970e-51 | -8.615850e-47 |
| Msa0011450 | Msa1361230 | -0.814951 | 1.186026e-51 | -8.615850e-47 |
| Msa0712350 | Msa1361230 | 0.812526 | 4.056303e-51 | -8.615850e-47 |
| Msa0151380 | Msa1361230 | -0.809160 | 2.170845e-50 | -8.615850e-47 |
| Msa0151510 | Msa1361230 | -0.802371 | 5.791219e-49 | -8.615850e-47 |
| Msa1241740 | Msa1361230 | 0.801482 | 8.820446e-49 | -8.615850e-47 |
| Msa0415100 | Msa1361230 | 0.802420 | 5.659123e-49 | -8.615850e-47 |
| Msa0300130 | Msa1361230 | -0.802661 | 5.046043e-49 | -8.615850e-47 |
| Msa0590620 | Msa1361230 | -0.803165 | 3.971066e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361230 | MtrunA17_Chr5g0396771 | 86.957 | 92 | 7 | 2 | 1 | 88 | 1 | 91 | 1.29e-50 | 154 |
| Msa1361230 | MtrunA17_Chr2g0322831 | 53.968 | 63 | 24 | 2 | 17 | 79 | 20 | 77 | 1.20e-16 | 67.8 |
| Msa1361230 | MtrunA17_Chr4g0024181 | 43.836 | 73 | 40 | 1 | 9 | 81 | 2 | 73 | 7.34e-16 | 65.9 |
| Msa1361230 | MtrunA17_Chr2g0288361 | 49.020 | 51 | 25 | 1 | 31 | 81 | 25 | 74 | 1.96e-13 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361230 | AT2G30420.1 | 62.651 | 83 | 24 | 2 | 6 | 88 | 17 | 92 | 2.18e-28 | 99.0 |
| Msa1361230 | AT5G53200.1 | 69.231 | 65 | 19 | 1 | 24 | 88 | 22 | 85 | 3.14e-28 | 98.2 |
| Msa1361230 | AT2G46410.1 | 60.000 | 75 | 29 | 1 | 13 | 87 | 16 | 89 | 5.53e-27 | 94.7 |
| Msa1361230 | AT2G30424.1 | 58.974 | 78 | 30 | 2 | 12 | 88 | 12 | 88 | 7.93e-26 | 92.0 |
| Msa1361230 | AT2G30432.1 | 64.179 | 67 | 23 | 1 | 19 | 85 | 19 | 84 | 3.38e-25 | 90.1 |
| Msa1361230 | AT4G01060.1 | 55.128 | 78 | 34 | 1 | 1 | 78 | 1 | 77 | 3.75e-24 | 87.0 |
| Msa1361230 | AT4G01060.2 | 62.500 | 64 | 23 | 1 | 15 | 78 | 12 | 74 | 1.52e-23 | 85.5 |
| Msa1361230 | AT1G01380.1 | 73.913 | 46 | 11 | 1 | 33 | 78 | 32 | 76 | 9.33e-19 | 73.6 |
| Msa1361230 | AT4G01060.3 | 68.085 | 47 | 14 | 1 | 32 | 78 | 30 | 75 | 8.22e-18 | 70.9 |
| Msa1361230 | AT2G30424.3 | 53.333 | 60 | 24 | 2 | 12 | 70 | 12 | 68 | 7.68e-12 | 55.8 |
Find 31 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTCACTTCTTTCTTT+TGG | 0.236926 | tig0017392:-54332 | None:intergenic |
| CGGAGGTTTGACTTGTGTTT+CGG | 0.239671 | tig0017392:-53374 | None:intergenic |
| CAGAAGAAATAGAGAGATTC+TGG | 0.240435 | tig0017392:+54281 | Msa1361230:CDS |
| GGAGGTTTGACTTGTGTTTC+GGG | 0.242590 | tig0017392:-53373 | None:intergenic |
| GGGAGATATTTGCCTTAGTT+TGG | 0.291933 | tig0017392:-53353 | None:intergenic |
| CTAGCATACAAACTTTGTTT+TGG | 0.300692 | tig0017392:+54426 | Msa1361230:three_prime_UTR |
| ACCACCAGGTAGATAAAATA+TGG | 0.317616 | tig0017392:+53320 | None:intergenic |
| TGTCTGAAGCAAGCTTTATA+TGG | 0.347994 | tig0017392:+54499 | Msa1361230:three_prime_UTR |
| TTGATAGCAGGTCGCATTCC+TGG | 0.360830 | tig0017392:+54250 | Msa1361230:CDS |
| GGAGATATTTGCCTTAGTTT+GGG | 0.373654 | tig0017392:-53352 | None:intergenic |
| TTTGTATTGCATCTCGTTGA+AGG | 0.424176 | tig0017392:+54463 | Msa1361230:three_prime_UTR |
| CAATTATATCTCTCTCTCCT+AGG | 0.480221 | tig0017392:+54389 | Msa1361230:three_prime_UTR |
| GGAAGAACGTTCCCAAACTA+AGG | 0.483455 | tig0017392:+53341 | Msa1361230:CDS |
| TGTACGACCTAGTTGGAGAT+AGG | 0.497484 | tig0017392:+53673 | Msa1361230:CDS |
| AGCAGGTGGAATTTGATAGC+AGG | 0.532686 | tig0017392:+54238 | Msa1361230:intron |
| CGCAGGATGTACGACCTAGT+TGG | 0.536525 | tig0017392:+53666 | Msa1361230:CDS |
| CAGAAGTGAGCAGCACTGAG+TGG | 0.541606 | tig0017392:+53604 | Msa1361230:CDS |
| ATTTCTTCTGCTTTACGACC+AGG | 0.542074 | tig0017392:-54268 | None:intergenic |
| AAAATCAAGTGTAGGACAAA+CGG | 0.544304 | tig0017392:-54573 | None:intergenic |
| TAGAATAATCAATCATGCCT+AGG | 0.562767 | tig0017392:-54406 | None:intergenic |
| AGAAGTGAGCAGCACTGAGT+GGG | 0.563793 | tig0017392:+53605 | Msa1361230:CDS |
| AAGATAAAGCAAATTAAACT+AGG | 0.566688 | tig0017392:+54348 | Msa1361230:exon |
| CATAGAGATGAGCGAGCAAG+AGG | 0.568119 | tig0017392:+53632 | Msa1361230:CDS |
| TATAAAGCTTGCTTCAGACA+TGG | 0.570675 | tig0017392:-54496 | None:intergenic |
| ATAAAGCTTGCTTCAGACAT+GGG | 0.573902 | tig0017392:-54495 | None:intergenic |
| AAGAGGAGGATCTCATTCGC+AGG | 0.581290 | tig0017392:+53649 | Msa1361230:CDS |
| ACAAAAGGAAAATCAAGTGT+AGG | 0.581382 | tig0017392:-54581 | None:intergenic |
| AGAGATGAGCGAGCAAGAGG+AGG | 0.612798 | tig0017392:+53635 | Msa1361230:CDS |
| AGATTAGAAACCACCTTCGG+AGG | 0.612968 | tig0017392:-53391 | None:intergenic |
| TTAATTACCTATCTCCAACT+AGG | 0.634724 | tig0017392:-53680 | None:intergenic |
| AACACAAGTCAAACCTCCGA+AGG | 0.653483 | tig0017392:+53378 | Msa1361230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGCAATAGAGAAAATAA+TGG | - | tig0017392:53452-53471 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | - | tig0017392:53559-53578 | None:intergenic | 20.0% |
| !! | TATGATACTAATTGAATGTT+TGG | - | tig0017392:53937-53956 | None:intergenic | 20.0% |
| !! | TAATCTTATATTATTGTGTC+CGG | - | tig0017392:54073-54092 | None:intergenic | 20.0% |
| !!! | CATATAAGCTTTTATATGAA+AGG | + | tig0017392:54189-54208 | Msa1361230:intron | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | + | tig0017392:54348-54367 | Msa1361230:exon | 20.0% |
| !!! | TGTATTTTGTACATAGTTTA+AGG | + | tig0017392:54532-54551 | Msa1361230:three_prime_UTR | 20.0% |
| !! | AAAAGCAATAGAGAAAATAA+TGG | - | tig0017392:53452-53471 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | - | tig0017392:53559-53578 | None:intergenic | 20.0% |
| !! | TATGATACTAATTGAATGTT+TGG | - | tig0017392:53937-53956 | None:intergenic | 20.0% |
| !! | TAATCTTATATTATTGTGTC+CGG | - | tig0017392:54073-54092 | None:intergenic | 20.0% |
| !!! | CATATAAGCTTTTATATGAA+AGG | + | tig0017392:54189-54208 | Msa1361230:intron | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | + | tig0017392:54348-54367 | Msa1361230:exon | 20.0% |
| !!! | TGTATTTTGTACATAGTTTA+AGG | + | tig0017392:54532-54551 | Msa1361230:three_prime_UTR | 20.0% |
| !! | TACAGACAAAGTATTATACA+TGG | - | tig0017392:53706-53725 | None:intergenic | 25.0% |
| ! | GTTAGTTAATTCTAACAACT+TGG | - | tig0017392:53970-53989 | None:intergenic | 25.0% |
| ! | ATATGCTAAAAAGTAAACAC+CGG | + | tig0017392:54051-54070 | Msa1361230:intron | 25.0% |
| !!! | TCTTTAAGTTGTATGATGTT+TGG | + | tig0017392:54129-54148 | Msa1361230:intron | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | - | tig0017392:54335-54354 | None:intergenic | 25.0% |
| !! | TACAGACAAAGTATTATACA+TGG | - | tig0017392:53706-53725 | None:intergenic | 25.0% |
| ! | GTTAGTTAATTCTAACAACT+TGG | - | tig0017392:53970-53989 | None:intergenic | 25.0% |
| ! | ATATGCTAAAAAGTAAACAC+CGG | + | tig0017392:54051-54070 | Msa1361230:intron | 25.0% |
| !!! | TCTTTAAGTTGTATGATGTT+TGG | + | tig0017392:54129-54148 | Msa1361230:intron | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | - | tig0017392:54335-54354 | None:intergenic | 25.0% |
| AGAGAAAATAATGGCATGTT+GGG | - | tig0017392:53443-53462 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | - | tig0017392:53444-53463 | None:intergenic | 30.0% | |
| TTATACGTGTACCAATTAAG+AGG | + | tig0017392:53501-53520 | Msa1361230:intron | 30.0% | |
| TTAATTACCTATCTCCAACT+AGG | - | tig0017392:53683-53702 | None:intergenic | 30.0% | |
| AAAAAAACCTCAAACGTCAA+AGG | - | tig0017392:53731-53750 | None:intergenic | 30.0% | |
| !! | TAAGAAGCTTTGACGTTTTA+AGG | + | tig0017392:53755-53774 | Msa1361230:intron | 30.0% |
| ! | ATTCTAACAACTTGGTCTTT+AGG | - | tig0017392:53962-53981 | None:intergenic | 30.0% |
| ATAGAAAAACTGTGATTGTG+AGG | + | tig0017392:54003-54022 | Msa1361230:intron | 30.0% | |
| ! | TTAAGTTGTATGATGTTTGG+TGG | + | tig0017392:54132-54151 | Msa1361230:intron | 30.0% |
| TAGAATAATCAATCATGCCT+AGG | - | tig0017392:54409-54428 | None:intergenic | 30.0% | |
| !! | CTAGCATACAAACTTTGTTT+TGG | + | tig0017392:54426-54445 | Msa1361230:three_prime_UTR | 30.0% |
| AAAATCAAGTGTAGGACAAA+CGG | - | tig0017392:54576-54595 | None:intergenic | 30.0% | |
| AGAGAAAATAATGGCATGTT+GGG | - | tig0017392:53443-53462 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | - | tig0017392:53444-53463 | None:intergenic | 30.0% | |
| TTATACGTGTACCAATTAAG+AGG | + | tig0017392:53501-53520 | Msa1361230:intron | 30.0% | |
| TTAATTACCTATCTCCAACT+AGG | - | tig0017392:53683-53702 | None:intergenic | 30.0% | |
| AAAAAAACCTCAAACGTCAA+AGG | - | tig0017392:53731-53750 | None:intergenic | 30.0% | |
| !! | TAAGAAGCTTTGACGTTTTA+AGG | + | tig0017392:53755-53774 | Msa1361230:intron | 30.0% |
| ! | ATTCTAACAACTTGGTCTTT+AGG | - | tig0017392:53962-53981 | None:intergenic | 30.0% |
| ATAGAAAAACTGTGATTGTG+AGG | + | tig0017392:54003-54022 | Msa1361230:intron | 30.0% | |
| ! | TTAAGTTGTATGATGTTTGG+TGG | + | tig0017392:54132-54151 | Msa1361230:intron | 30.0% |
| TAGAATAATCAATCATGCCT+AGG | - | tig0017392:54409-54428 | None:intergenic | 30.0% | |
| !! | CTAGCATACAAACTTTGTTT+TGG | + | tig0017392:54426-54445 | Msa1361230:three_prime_UTR | 30.0% |
| AAAATCAAGTGTAGGACAAA+CGG | - | tig0017392:54576-54595 | None:intergenic | 30.0% | |
| GGAGATATTTGCCTTAGTTT+GGG | - | tig0017392:53355-53374 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | - | tig0017392:53441-53460 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | - | tig0017392:53442-53461 | None:intergenic | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | - | tig0017392:53515-53534 | None:intergenic | 35.0% | |
| TACAGTTATAAAGAAGCCGA+GGG | + | tig0017392:53811-53830 | Msa1361230:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | + | tig0017392:54281-54300 | Msa1361230:CDS | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | - | tig0017392:54332-54351 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | + | tig0017392:54389-54408 | Msa1361230:three_prime_UTR | 35.0% | |
| TTTGTATTGCATCTCGTTGA+AGG | + | tig0017392:54463-54482 | Msa1361230:three_prime_UTR | 35.0% | |
| ! | ATAAAGCTTGCTTCAGACAT+GGG | - | tig0017392:54498-54517 | None:intergenic | 35.0% |
| ! | TATAAAGCTTGCTTCAGACA+TGG | - | tig0017392:54499-54518 | None:intergenic | 35.0% |
| ! | TGTCTGAAGCAAGCTTTATA+TGG | + | tig0017392:54499-54518 | Msa1361230:three_prime_UTR | 35.0% |
| GGAGATATTTGCCTTAGTTT+GGG | - | tig0017392:53355-53374 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | - | tig0017392:53441-53460 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | - | tig0017392:53442-53461 | None:intergenic | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | - | tig0017392:53515-53534 | None:intergenic | 35.0% | |
| TACAGTTATAAAGAAGCCGA+GGG | + | tig0017392:53811-53830 | Msa1361230:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | + | tig0017392:54281-54300 | Msa1361230:CDS | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | - | tig0017392:54332-54351 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | + | tig0017392:54389-54408 | Msa1361230:three_prime_UTR | 35.0% | |
| TTTGTATTGCATCTCGTTGA+AGG | + | tig0017392:54463-54482 | Msa1361230:three_prime_UTR | 35.0% | |
| ! | ATAAAGCTTGCTTCAGACAT+GGG | - | tig0017392:54498-54517 | None:intergenic | 35.0% |
| ! | TATAAAGCTTGCTTCAGACA+TGG | - | tig0017392:54499-54518 | None:intergenic | 35.0% |
| ! | TGTCTGAAGCAAGCTTTATA+TGG | + | tig0017392:54499-54518 | Msa1361230:three_prime_UTR | 35.0% |
| GGGAGATATTTGCCTTAGTT+TGG | - | tig0017392:53356-53375 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | - | tig0017392:53397-53416 | None:intergenic | 40.0% | |
| CTGTATTCCTTTGACGTTTG+AGG | + | tig0017392:53721-53740 | Msa1361230:intron | 40.0% | |
| CTACAGTTATAAAGAAGCCG+AGG | + | tig0017392:53810-53829 | Msa1361230:intron | 40.0% | |
| ATTTCTTCTGCTTTACGACC+AGG | - | tig0017392:54271-54290 | None:intergenic | 40.0% | |
| ! | GTCCTACACTTGATTTTCCT+TGG | + | tig0017392:54579-54598 | Msa1361230:three_prime_UTR | 40.0% |
| GGGAGATATTTGCCTTAGTT+TGG | - | tig0017392:53356-53375 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | - | tig0017392:53397-53416 | None:intergenic | 40.0% | |
| CTGTATTCCTTTGACGTTTG+AGG | + | tig0017392:53721-53740 | Msa1361230:intron | 40.0% | |
| CTACAGTTATAAAGAAGCCG+AGG | + | tig0017392:53810-53829 | Msa1361230:intron | 40.0% | |
| ATTTCTTCTGCTTTACGACC+AGG | - | tig0017392:54271-54290 | None:intergenic | 40.0% | |
| GGAAGAACGTTCCCAAACTA+AGG | + | tig0017392:53341-53360 | Msa1361230:CDS | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | - | tig0017392:53376-53395 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | - | tig0017392:53377-53396 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | + | tig0017392:53378-53397 | Msa1361230:CDS | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | - | tig0017392:53394-53413 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | - | tig0017392:53437-53456 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | - | tig0017392:53438-53457 | None:intergenic | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | + | tig0017392:53673-53692 | Msa1361230:CDS | 45.0% | |
| !! | CCGTGATTTTGAGAAACCCT+CGG | - | tig0017392:53830-53849 | None:intergenic | 45.0% |
| CCGAGGGTTTCTCAAAATCA+CGG | + | tig0017392:53827-53846 | Msa1361230:intron | 45.0% | |
| TAGAAACTACACAACGCAGC+AGG | + | tig0017392:54221-54240 | Msa1361230:intron | 45.0% | |
| ! | AGCAGGTGGAATTTGATAGC+AGG | + | tig0017392:54238-54257 | Msa1361230:intron | 45.0% |
| GGAAGAACGTTCCCAAACTA+AGG | + | tig0017392:53341-53360 | Msa1361230:CDS | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | - | tig0017392:53376-53395 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | - | tig0017392:53377-53396 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | + | tig0017392:53378-53397 | Msa1361230:CDS | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | - | tig0017392:53394-53413 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | - | tig0017392:53437-53456 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | - | tig0017392:53438-53457 | None:intergenic | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | + | tig0017392:53673-53692 | Msa1361230:CDS | 45.0% | |
| !! | CCGTGATTTTGAGAAACCCT+CGG | - | tig0017392:53830-53849 | None:intergenic | 45.0% |
| CCGAGGGTTTCTCAAAATCA+CGG | + | tig0017392:53827-53846 | Msa1361230:intron | 45.0% | |
| TAGAAACTACACAACGCAGC+AGG | + | tig0017392:54221-54240 | Msa1361230:intron | 45.0% | |
| ! | AGCAGGTGGAATTTGATAGC+AGG | + | tig0017392:54238-54257 | Msa1361230:intron | 45.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | + | tig0017392:53381-53400 | Msa1361230:intron | 50.0% | |
| ! | AGAAGTGAGCAGCACTGAGT+GGG | + | tig0017392:53605-53624 | Msa1361230:CDS | 50.0% |
| CATAGAGATGAGCGAGCAAG+AGG | + | tig0017392:53632-53651 | Msa1361230:CDS | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | + | tig0017392:53649-53668 | Msa1361230:CDS | 50.0% | |
| AAACTACACAACGCAGCAGG+TGG | + | tig0017392:54224-54243 | Msa1361230:intron | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+TGG | + | tig0017392:54250-54269 | Msa1361230:CDS | 50.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | + | tig0017392:53381-53400 | Msa1361230:intron | 50.0% | |
| ! | AGAAGTGAGCAGCACTGAGT+GGG | + | tig0017392:53605-53624 | Msa1361230:CDS | 50.0% |
| CATAGAGATGAGCGAGCAAG+AGG | + | tig0017392:53632-53651 | Msa1361230:CDS | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | + | tig0017392:53649-53668 | Msa1361230:CDS | 50.0% | |
| AAACTACACAACGCAGCAGG+TGG | + | tig0017392:54224-54243 | Msa1361230:intron | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+TGG | + | tig0017392:54250-54269 | Msa1361230:CDS | 50.0% |
| TGGGTGTGTGTGTGTGTTGG+GGG | - | tig0017392:53418-53437 | None:intergenic | 55.0% | |
| GTGGGTGTGTGTGTGTGTTG+GGG | - | tig0017392:53419-53438 | None:intergenic | 55.0% | |
| GGTGGGTGTGTGTGTGTGTT+GGG | - | tig0017392:53420-53439 | None:intergenic | 55.0% | |
| ! | CAGAAGTGAGCAGCACTGAG+TGG | + | tig0017392:53604-53623 | Msa1361230:CDS | 55.0% |
| AGAGATGAGCGAGCAAGAGG+AGG | + | tig0017392:53635-53654 | Msa1361230:CDS | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | + | tig0017392:53666-53685 | Msa1361230:CDS | 55.0% | |
| TGGGTGTGTGTGTGTGTTGG+GGG | - | tig0017392:53418-53437 | None:intergenic | 55.0% | |
| GTGGGTGTGTGTGTGTGTTG+GGG | - | tig0017392:53419-53438 | None:intergenic | 55.0% | |
| GGTGGGTGTGTGTGTGTGTT+GGG | - | tig0017392:53420-53439 | None:intergenic | 55.0% | |
| ! | CAGAAGTGAGCAGCACTGAG+TGG | + | tig0017392:53604-53623 | Msa1361230:CDS | 55.0% |
| AGAGATGAGCGAGCAAGAGG+AGG | + | tig0017392:53635-53654 | Msa1361230:CDS | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | + | tig0017392:53666-53685 | Msa1361230:CDS | 55.0% | |
| GGGTGGGTGTGTGTGTGTGT+TGG | - | tig0017392:53421-53440 | None:intergenic | 60.0% | |
| GGGTGGGTGTGTGTGTGTGT+TGG | - | tig0017392:53421-53440 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017392 | gene | 53327 | 54599 | 53327 | ID=Msa1361230;Name=Msa1361230 |
| tig0017392 | mRNA | 53327 | 54599 | 53327 | ID=Msa1361230-mRNA-1;Parent=Msa1361230;Name=Msa1361230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=12|0|0.33|1|0|0|3|251|88 |
| tig0017392 | exon | 53327 | 53399 | 53327 | ID=Msa1361230-mRNA-1:exon:12308;Parent=Msa1361230-mRNA-1 |
| tig0017392 | exon | 53598 | 53694 | 53598 | ID=Msa1361230-mRNA-1:exon:12309;Parent=Msa1361230-mRNA-1 |
| tig0017392 | exon | 54240 | 54599 | 54240 | ID=Msa1361230-mRNA-1:exon:12310;Parent=Msa1361230-mRNA-1 |
| tig0017392 | five_prime_UTR | 53327 | 53338 | 53327 | ID=Msa1361230-mRNA-1:five_prime_utr;Parent=Msa1361230-mRNA-1 |
| tig0017392 | CDS | 53339 | 53399 | 53339 | ID=Msa1361230-mRNA-1:cds;Parent=Msa1361230-mRNA-1 |
| tig0017392 | CDS | 53598 | 53694 | 53598 | ID=Msa1361230-mRNA-1:cds;Parent=Msa1361230-mRNA-1 |
| tig0017392 | CDS | 54240 | 54348 | 54240 | ID=Msa1361230-mRNA-1:cds;Parent=Msa1361230-mRNA-1 |
| tig0017392 | three_prime_UTR | 54349 | 54599 | 54349 | ID=Msa1361230-mRNA-1:three_prime_utr;Parent=Msa1361230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
