AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713480 MtrunA17_Chr5g0400241 90.239 543 35 1 1 525 1 543 0.0 1004
Msa0713480 MtrunA17_Chr4g0054981 63.964 555 145 11 1 513 1 542 0.0 656
Msa0713480 MtrunA17_Chr2g0324891 34.701 268 130 8 287 514 155 417 8.70e-40 149
Msa0713480 MtrunA17_Chr4g0040481 34.351 262 133 5 290 513 155 415 1.04e-36 140
Msa0713480 MtrunA17_Chr4g0067981 63.333 60 22 0 292 351 214 273 6.01e-18 87.4
Msa0713480 MtrunA17_Chr3g0137101 54.545 66 30 0 286 351 191 256 4.27e-17 84.7
Msa0713480 MtrunA17_Chr7g0255711 58.333 60 25 0 292 351 90 149 6.44e-17 81.6
Msa0713480 MtrunA17_Chr2g0304841 32.222 180 95 5 289 462 209 367 8.99e-17 83.6
Msa0713480 MtrunA17_Chr1g0161431 58.333 60 25 0 292 351 199 258 1.73e-16 82.8
Msa0713480 MtrunA17_Chr1g0149841 57.377 61 26 0 291 351 189 249 6.49e-16 80.5
Msa0713480 MtrunA17_Chr4g0074421 42.268 97 56 0 246 342 86 182 8.37e-16 76.3
Msa0713480 MtrunA17_Chr4g0031961 55.000 60 27 0 292 351 130 189 9.05e-16 78.2
Msa0713480 MtrunA17_Chr2g0294911 55.000 60 27 0 292 351 210 269 1.47e-15 79.7
Msa0713480 MtrunA17_Chr4g0074401 32.961 179 97 9 288 446 198 373 3.30e-15 78.6
Msa0713480 MtrunA17_Chr4g0074411 36.170 141 59 5 289 401 197 334 9.15e-15 77.0
Msa0713480 MtrunA17_Chr8g0376881 60.714 56 22 0 292 347 208 263 6.96e-14 74.3
Msa0713480 MtrunA17_Chr3g0123131 41.758 91 48 1 273 358 174 264 1.26e-13 73.6
Msa0713480 MtrunA17_Chr1g0198601 46.429 84 41 2 268 350 189 269 2.40e-13 71.6
Msa0713480 MtrunA17_Chr5g0422621 48.000 75 35 3 286 357 192 265 5.60e-13 70.5
Msa0713480 MtrunA17_Chr4g0045361 47.826 69 35 1 284 351 265 333 6.43e-13 70.9
Msa0713480 MtrunA17_Chr1g0149831 40.566 106 52 5 291 389 126 227 9.17e-13 68.2
Msa0713480 MtrunA17_Chr4g0009901 44.928 69 38 0 282 350 157 225 1.12e-12 68.6
Msa0713480 MtrunA17_Chr4g0009851 33.333 93 62 0 282 374 158 250 1.52e-12 68.6
Msa0713480 MtrunA17_Chr4g0062921 52.308 65 29 2 287 350 230 293 1.64e-12 69.3
Msa0713480 MtrunA17_Chr4g0009981 29.286 140 95 2 236 374 61 197 2.25e-12 67.4
Msa0713480 MtrunA17_Chr1g0175081 52.727 55 25 1 295 348 24 78 5.99e-12 62.4
Msa0713480 MtrunA17_Chr7g0275891 47.297 74 26 1 291 351 189 262 8.90e-12 66.6
Msa0713480 MtrunA17_Chr6g0473731 46.667 60 32 0 292 351 94 153 9.22e-12 67.4
Msa0713480 MtrunA17_Chr3g0134461 52.632 57 27 0 286 342 136 192 9.86e-12 64.3
Msa0713480 MtrunA17_Chr1g0149851 38.462 91 35 2 291 360 189 279 1.18e-11 67.0
Msa0713480 MtrunA17_Chr1g0175091 44.444 81 41 2 269 348 237 314 1.90e-11 66.2
Msa0713480 MtrunA17_Chr3g0134481 35.714 70 45 0 275 344 114 183 2.69e-11 62.8
Msa0713480 MtrunA17_Chr7g0275401 51.852 54 26 0 292 345 191 244 8.72e-11 63.2
Msa0713480 MtrunA17_Chr5g0417521 43.939 66 36 1 295 359 17 82 8.81e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713480 AT4G18020.3 44.894 568 208 19 1 513 1 518 6.41e-118 358
Msa0713480 AT4G18020.2 44.894 568 208 19 1 513 1 518 6.41e-118 358
Msa0713480 AT4G18020.1 44.894 568 208 19 1 513 1 518 6.41e-118 358
Msa0713480 AT4G18020.6 44.894 568 208 19 1 513 1 518 6.41e-118 358
Msa0713480 AT4G18020.9 44.894 568 208 19 1 513 1 518 6.41e-118 358
Msa0713480 AT4G18020.8 43.984 507 187 18 1 460 1 457 1.55e-110 337
Msa0713480 AT4G18020.11 43.984 507 187 18 1 460 1 457 1.55e-110 337
Msa0713480 AT4G18020.4 43.984 507 187 18 1 460 1 457 1.55e-110 337
Msa0713480 AT4G18020.5 43.984 507 187 18 1 460 1 457 1.55e-110 337
Msa0713480 AT4G18020.10 43.984 507 187 18 1 460 1 457 1.55e-110 337
Msa0713480 AT4G18020.7 43.984 507 187 18 1 460 1 457 1.55e-110 337
Msa0713480 AT5G44190.1 38.400 250 112 9 291 513 145 379 1.48e-25 108
Msa0713480 AT2G20570.1 38.095 147 83 2 226 364 79 225 2.51e-23 102
Msa0713480 AT5G44190.2 44.961 129 57 4 291 405 145 273 6.74e-23 100
Msa0713480 AT2G20570.2 61.111 72 27 1 294 364 170 241 2.64e-21 97.1
Msa0713480 AT5G58080.1 49.351 77 39 0 286 362 187 263 1.94e-18 89.4
Msa0713480 AT3G16857.3 55.714 70 31 0 282 351 156 225 4.03e-18 88.2
Msa0713480 AT3G16857.2 55.714 70 31 0 282 351 226 295 5.61e-18 87.8
Msa0713480 AT3G16857.1 55.714 70 31 0 282 351 226 295 5.69e-18 87.8
Msa0713480 AT2G01760.3 58.730 63 26 0 289 351 131 193 1.29e-17 84.3
Msa0713480 AT3G10760.1 58.333 60 25 0 292 351 104 163 2.00e-17 84.0
Msa0713480 AT5G59570.2 54.412 68 29 1 292 357 140 207 2.65e-17 83.2
Msa0713480 AT5G59570.1 54.412 68 29 1 292 357 140 207 2.65e-17 83.2
Msa0713480 AT5G05090.1 58.333 60 25 0 292 351 80 139 2.86e-17 82.4
Msa0713480 AT2G01760.1 58.730 63 26 0 289 351 196 258 2.94e-17 84.3
Msa0713480 AT2G01760.2 58.730 63 26 0 289 351 224 286 3.98e-17 84.0
Msa0713480 AT2G40970.1 58.333 60 25 0 292 351 104 163 1.02e-16 80.5
Msa0713480 AT4G31920.1 36.620 142 76 5 291 424 181 316 2.48e-16 82.4
Msa0713480 AT2G25180.1 59.016 61 25 0 291 351 193 253 4.35e-16 81.6
Msa0713480 AT3G46640.2 55.000 60 27 0 292 351 143 202 5.21e-16 79.7
Msa0713480 AT3G46640.1 55.000 60 27 0 292 351 143 202 5.21e-16 79.7
Msa0713480 AT3G46640.3 55.000 60 27 0 292 351 143 202 7.77e-16 79.0
Msa0713480 AT5G07210.2 42.222 90 51 1 292 380 221 310 6.54e-15 78.2
Msa0713480 AT5G07210.1 42.222 90 51 1 292 380 229 318 6.56e-15 78.2
Msa0713480 AT2G27070.1 40.000 90 53 1 292 380 224 313 1.05e-14 77.4
Msa0713480 AT2G03500.1 52.308 65 29 2 287 350 228 291 6.96e-13 71.2
Msa0713480 AT1G25550.1 36.207 116 56 6 289 396 206 311 2.31e-12 68.9
Msa0713480 AT4G37180.1 55.738 61 26 1 291 350 208 268 5.03e-12 67.8
Msa0713480 AT4G37180.2 55.738 61 26 1 291 350 215 275 5.44e-12 67.8
Msa0713480 AT5G49240.1 48.387 62 32 0 292 353 222 283 7.07e-12 66.6
Msa0713480 AT1G13300.1 50.000 60 29 1 292 350 180 239 1.05e-11 67.0
Msa0713480 AT2G01060.1 49.206 63 31 1 287 348 9 71 4.72e-11 64.3
Msa0713480 AT1G67710.3 55.172 58 25 1 295 351 121 178 6.69e-11 65.1
Msa0713480 AT1G67710.2 55.172 58 25 1 295 351 130 187 7.42e-11 64.7
Msa0713480 AT5G06800.3 45.000 80 30 3 270 348 182 248 8.01e-11 63.5
Msa0713480 AT1G67710.1 55.172 58 25 1 295 351 195 252 9.97e-11 64.7

Find 208 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGCTCTTCTTGCTAAA+AGG 0.234968 5_1:+5632185 None:intergenic
AGCCATTCCTTCTCGTATAT+TGG 0.261203 5_1:-5633753 Msa0713480:CDS
AAGATTACCCCTGGCGGATA+TGG 0.263394 5_1:+5633305 None:intergenic
TCTGCTTTGGTGATTTGATA+TGG 0.275119 5_1:+5631371 None:intergenic
ACGAGCTAAAATAATGAAAT+TGG 0.279103 5_1:+5631500 None:intergenic
AGAAGAACCCTAAGTCCTTT+TGG 0.287836 5_1:+5636807 None:intergenic
AAGAACAAAGCTTGAATCTA+TGG 0.296938 5_1:-5636751 Msa0713480:CDS
TTGTATGCAAAGACCGATTA+TGG 0.298780 5_1:-5633477 Msa0713480:CDS
TACCTTGGCTGAAAAGAAAA+TGG 0.312284 5_1:+5637492 None:intergenic
AATTTGTATTGGTGAAGTTT+TGG 0.341698 5_1:+5637521 None:intergenic
CTTGAATCTATGGACTATAA+TGG 0.346894 5_1:-5636741 Msa0713480:intron
TGCTGACTTACTTGAGTGTA+AGG 0.351117 5_1:+5633102 None:intergenic
CTTAATCTAATCTACCATTC+TGG 0.351819 5_1:+5631979 None:intergenic
ACACGGACGAAGATCGAAAA+TGG 0.354454 5_1:-5633532 Msa0713480:CDS
TTGTGTTAGTGTTGTTGGAT+AGG 0.357735 5_1:-5631652 Msa0713480:three_prime_UTR
TGCATAGGATCTCTTCGATT+TGG 0.358006 5_1:+5633509 None:intergenic
ACCTACGAAACCTCTGATTA+AGG 0.360688 5_1:-5634430 Msa0713480:CDS
AGTGCGTCCATCTGAGTTGC+AGG 0.367977 5_1:-5635539 Msa0713480:intron
CATGTAGTGCGTTGTCTGTT+TGG 0.369087 5_1:+5634706 None:intergenic
CTTGTTGTTCATGACTCAAA+TGG 0.369721 5_1:-5632146 Msa0713480:three_prime_UTR
GTCCTCCGGGTTATCCTCTA+TGG 0.370689 5_1:-5633355 Msa0713480:CDS
AAACAGCTGGTGTACCGATT+TGG 0.372797 5_1:-5633379 Msa0713480:CDS
CATTATTAGATAACTCTACT+AGG 0.376355 5_1:+5631626 None:intergenic
AAGATTTCCCAAAAGGACTT+AGG 0.377585 5_1:-5636815 Msa0713480:CDS
TTTCCATCCTTGTAAATCAT+TGG 0.382036 5_1:+5636836 None:intergenic
TTGTGTAGAGGACTAGAAAA+AGG 0.382257 5_1:-5636886 Msa0713480:five_prime_UTR
TAATGTGGCAAGCCATCTTC+AGG 0.386166 5_1:-5633699 Msa0713480:intron
TATCTAATAATGGAAAGTTT+AGG 0.393877 5_1:-5631615 Msa0713480:three_prime_UTR
TATGGCAACATGGAAGCATT+TGG 0.394078 5_1:+5635989 None:intergenic
TGTGTTAGTGTTGTTGGATA+GGG 0.397313 5_1:-5631651 Msa0713480:three_prime_UTR
CAGAATTGTTGTCTCCTTCA+AGG 0.400600 5_1:+5636784 None:intergenic
AACGGTTCCAAGGGTGAGAA+TGG 0.408917 5_1:-5634390 Msa0713480:CDS
CTGTTGATGGTGGTGGGTGG+TGG 0.413625 5_1:-5632100 Msa0713480:three_prime_UTR
GAAGGAGGTTTGAGGCCTAT+AGG 0.414096 5_1:+5632248 None:intergenic
CTACATAGGTGTCCGTGTTA+TGG 0.415999 5_1:+5631923 None:intergenic
CTTAGGGTTCTTCTCCTTGA+AGG 0.421200 5_1:-5636798 Msa0713480:CDS
AGTGCAAACCATAGCTGGTT+TGG 0.423236 5_1:+5636860 None:intergenic
CTAGTAGAGTTATCTAATAA+TGG 0.427589 5_1:-5631625 Msa0713480:three_prime_UTR
AATCTACCATTCTGGTTGGT+TGG 0.427665 5_1:+5631987 None:intergenic
TGATTGATGAGTCCAGTCTT+TGG 0.430716 5_1:-5631547 Msa0713480:three_prime_UTR
AGCTCCTGCATATCCTATGT+GGG 0.434588 5_1:-5633417 Msa0713480:CDS
AGTTAGTATCCGCCAAAGAC+TGG 0.435785 5_1:+5631535 None:intergenic
AATGGTAGATTAGATTAAGT+TGG 0.437487 5_1:-5631975 Msa0713480:three_prime_UTR
ATCAGAGGTTTCGTAGGTTG+AGG 0.442825 5_1:+5634435 None:intergenic
ACGGACACCTATGTAGCTTC+TGG 0.444310 5_1:-5631916 Msa0713480:three_prime_UTR
ATGGCAACATGGAAGCATTT+GGG 0.445028 5_1:+5635990 None:intergenic
GACTCTACAGATTCTTTGAC+CGG 0.446068 5_1:+5634741 None:intergenic
ACAATGATGCATGCAACAAA+TGG 0.446090 5_1:-5631883 Msa0713480:three_prime_UTR
TAGGTACAAACTTCAATTGA+TGG 0.446180 5_1:+5631681 None:intergenic
AAAACAAGGGGCAAGGTTAG+TGG 0.446707 5_1:-5634577 Msa0713480:CDS
ATCAAACTGCAGAATATGGC+TGG 0.446826 5_1:-5632754 Msa0713480:intron
AGATTTCCCAAAAGGACTTA+GGG 0.447765 5_1:-5636814 Msa0713480:CDS
ATGGTAGATTAGATTAAGTT+GGG 0.449486 5_1:-5631974 Msa0713480:three_prime_UTR
CCATGGCTACCTTTACCTAT+AGG 0.454703 5_1:-5632263 Msa0713480:CDS
CGTGTTATGGTAGGGACCAC+AGG 0.454839 5_1:+5631936 None:intergenic
CAACAGTAACTAGCACTGTT+TGG 0.455077 5_1:+5632117 None:intergenic
CTAGTTACTGTTGATGGTGG+TGG 0.460683 5_1:-5632107 Msa0713480:three_prime_UTR
ACGGTTCCAAGGGTGAGAAT+GGG 0.464644 5_1:-5634389 Msa0713480:CDS
GGTAAAGTGCAGCGCGTTGA+AGG 0.465837 5_1:+5637599 None:intergenic
CGGACACCTATGTAGCTTCT+GGG 0.466833 5_1:-5631915 Msa0713480:three_prime_UTR
TTCAGGTGCATGTGGATGCA+TGG 0.466852 5_1:-5633164 Msa0713480:intron
TGTACCGATTTGGAGTCCTC+CGG 0.467682 5_1:-5633369 Msa0713480:CDS
CAGCTCCTGCATATCCTATG+TGG 0.469307 5_1:-5633418 Msa0713480:CDS
TTTGAGGTGGAGGCAACATT+GGG 0.470593 5_1:+5633136 None:intergenic
CGATTAGCTTTATTCTCACA+TGG 0.470968 5_1:+5634282 None:intergenic
ATGCATGGGCCAATGCCATA+TGG 0.471531 5_1:-5632055 Msa0713480:three_prime_UTR
TTGGCAGTGCAAACCATAGC+TGG 0.472215 5_1:+5636855 None:intergenic
AATGGCCCACGAATTTGTAT+TGG 0.472547 5_1:+5637510 None:intergenic
TAAGGGATACAGTGAGTTTG+AGG 0.473363 5_1:+5633120 None:intergenic
GATTATTACAACAGTCCATA+TGG 0.473847 5_1:+5632040 None:intergenic
ACAAAATAATTACCTGAAGA+TGG 0.478335 5_1:+5633687 None:intergenic
AGGCCTCAAACCTCCTTCAA+TGG 0.480176 5_1:-5632243 Msa0713480:CDS
CATGTGAGAATAAAGCTAAT+CGG 0.480529 5_1:-5634281 Msa0713480:CDS
AAAGTTCATTACCTCCACTA+TGG 0.481628 5_1:+5635971 None:intergenic
AGCAGTGGATTATAGTTATC+CGG 0.482719 5_1:-5632716 Msa0713480:intron
TCAGGTGCATGTGGATGCAT+GGG 0.484304 5_1:-5633163 Msa0713480:intron
AAATAATGAAATTGGTAATG+AGG 0.484572 5_1:+5631508 None:intergenic
CACATAGGATATGCAGGAGC+TGG 0.488577 5_1:+5633419 None:intergenic
TTCAGCTTGTCCTCAGAAAG+TGG 0.491885 5_1:+5634916 None:intergenic
TATGGTGGATAGGCCATAAT+CGG 0.494071 5_1:+5633464 None:intergenic
TGAAGCCCCATTCTCACCCT+TGG 0.498280 5_1:+5634383 None:intergenic
ATGTTCATTATCACTAAACT+TGG 0.498521 5_1:+5634650 None:intergenic
ATTGATGCAGGCAGAGGAAG+TGG 0.499805 5_1:-5632318 Msa0713480:intron
AGTGGTGGACAAGGCTGTAA+AGG 0.501990 5_1:-5632300 Msa0713480:CDS
AATAATGAAATTGGTAATGA+GGG 0.502570 5_1:+5631509 None:intergenic
GGATGGAAAGATTTCCCAAA+AGG 0.504062 5_1:-5636822 Msa0713480:CDS
AATTGAGGAGTCGAAGGAGC+CGG 0.504982 5_1:+5634600 None:intergenic
GTTTGAGGTGGAGGCAACAT+TGG 0.505444 5_1:+5633135 None:intergenic
TTCAGACAGAGCGCTTGCCT+CGG 0.507470 5_1:+5634773 None:intergenic
GGTTTGAGGCCTATAGGTAA+AGG 0.507845 5_1:+5632254 None:intergenic
CTGGTTGGTTGGAGCCTAAG+AGG 0.509344 5_1:+5631998 None:intergenic
CAGCTGTTTGACTTCCGTGT+TGG 0.509674 5_1:+5633393 None:intergenic
TAGTTACTGTTGATGGTGGT+GGG 0.510112 5_1:-5632106 Msa0713480:three_prime_UTR
TCTGTCTGAATCGCTTAAAC+CGG 0.513162 5_1:-5634760 Msa0713480:CDS
GAAAGTATGAAGAGAGAGAG+AGG 0.513856 5_1:+5637578 None:intergenic
GTGAAGGCAGTGGAACATCT+AGG 0.515004 5_1:-5633785 Msa0713480:CDS
TACAACAGTCCATATGGCAT+TGG 0.515441 5_1:+5632046 None:intergenic
CTCCAATATACGAGAAGGAA+TGG 0.515998 5_1:+5633751 None:intergenic
TATCCATTGAAGGAGGTTTG+AGG 0.516912 5_1:+5632240 None:intergenic
CATTGGAAGCCATATCCGCC+AGG 0.517092 5_1:-5633314 Msa0713480:CDS
GGAAAGTTTAGGTAGGAAGT+AGG 0.518233 5_1:-5631604 Msa0713480:three_prime_UTR
ATGCTTCCATGTTGCCATAG+TGG 0.519336 5_1:-5635985 Msa0713480:CDS
GACGGCAAGCGATAAATATC+CGG 0.521710 5_1:-5634619 Msa0713480:CDS
ACAGTGCTAGTTACTGTTGA+TGG 0.522075 5_1:-5632113 Msa0713480:three_prime_UTR
AGCATGTAGTAACAATTATG+AGG 0.522586 5_1:-5631455 Msa0713480:three_prime_UTR
TCATTTCCCAGAAGCTACAT+AGG 0.528420 5_1:+5631909 None:intergenic
AAAGGATGCCAAACCAGCTA+TGG 0.530919 5_1:-5636868 Msa0713480:exon
ATACAGTGAGTTTGAGGTGG+AGG 0.531317 5_1:+5633126 None:intergenic
TGCACTGCCAATGATTTACA+AGG 0.534699 5_1:-5636843 Msa0713480:CDS
TGGTGGACAGACAAACTTGC+TGG 0.535931 5_1:-5632083 Msa0713480:three_prime_UTR
ATCTAATCTACCATTCTGGT+TGG 0.537652 5_1:+5631983 None:intergenic
CTTTCTGTAGGCTGCCATAG+AGG 0.540911 5_1:+5633341 None:intergenic
TAACCCGGAGGACTCCAAAT+CGG 0.541856 5_1:+5633365 None:intergenic
TATGGCAGCCTACAGAAAGT+TGG 0.542411 5_1:-5633337 Msa0713480:CDS
CTTCCGTGTTGGCCCCACAT+AGG 0.543505 5_1:+5633404 None:intergenic
CTCAATTAAAACAAGGGGCA+AGG 0.543629 5_1:-5634584 Msa0713480:CDS
ATTCTCACCCTTGGAACCGT+TGG 0.545261 5_1:+5634392 None:intergenic
TGGCCCCACATAGGATATGC+AGG 0.545338 5_1:+5633413 None:intergenic
GGTTATAAATCATATGATCA+AGG 0.546483 5_1:+5635563 None:intergenic
CAGTAACTAGCACTGTTTGG+TGG 0.546715 5_1:+5632120 None:intergenic
TCCAACACACTATCCATTGA+AGG 0.547337 5_1:+5632230 None:intergenic
GTACCGATTTGGAGTCCTCC+GGG 0.547442 5_1:-5633368 Msa0713480:CDS
GGCAGAGGAAGTGGTGGACA+AGG 0.548339 5_1:-5632309 Msa0713480:CDS
AAGGTGTGATTAGAATGATA+TGG 0.548662 5_1:+5633446 None:intergenic
TTGTTGTTCATGACTCAAAT+GGG 0.550319 5_1:-5632145 Msa0713480:three_prime_UTR
GCCTTAATCAGAGGTTTCGT+AGG 0.552358 5_1:+5634429 None:intergenic
TTGATGAGTCCAGTCTTTGG+CGG 0.552528 5_1:-5631544 Msa0713480:three_prime_UTR
TTCCAATGCCAACTTTCTGT+AGG 0.557441 5_1:+5633329 None:intergenic
ACTTGCTGGCAGACATGCAT+GGG 0.557989 5_1:-5632069 Msa0713480:three_prime_UTR
GCAGAAGAACAAGAACAGAT+TGG 0.561014 5_1:-5636924 Msa0713480:intron
ATGACATACATGGATGATGA+TGG 0.561202 5_1:-5631858 Msa0713480:three_prime_UTR
AGTAACTAGCACTGTTTGGT+GGG 0.568901 5_1:+5632121 None:intergenic
TGTTAGTGTTGTTGGATAGG+GGG 0.569821 5_1:-5631649 Msa0713480:three_prime_UTR
GTGTTAGTGTTGTTGGATAG+GGG 0.569879 5_1:-5631650 Msa0713480:three_prime_UTR
ATACAATAGTTCCTTTGCAT+AGG 0.572699 5_1:+5633494 None:intergenic
GGGATACAGTGAGTTTGAGG+TGG 0.573814 5_1:+5633123 None:intergenic
ATAGGTGTCCGTGTTATGGT+AGG 0.575875 5_1:+5631927 None:intergenic
TTGAGCAATTAGTCTGCTCA+TGG 0.576741 5_1:+5634541 None:intergenic
TCTTCTTCCGCCTTAATCAG+AGG 0.577092 5_1:+5634420 None:intergenic
ATACTCACCTGCAACTCAGA+TGG 0.578811 5_1:+5635532 None:intergenic
TCCTTCAATGGATAGTGTGT+TGG 0.579357 5_1:-5632231 Msa0713480:CDS
GGGGCAAGGTTAGTGGATGA+TGG 0.579359 5_1:-5634570 Msa0713480:CDS
AATATCAATAGATTTAGATA+AGG 0.579803 5_1:-5634676 Msa0713480:CDS
AGCCTACAGAAAGTTGGCAT+TGG 0.580116 5_1:-5633331 Msa0713480:CDS
GCTGACTTACTTGAGTGTAA+GGG 0.580632 5_1:+5633103 None:intergenic
TAATAATGGAAAGTTTAGGT+AGG 0.582334 5_1:-5631611 Msa0713480:three_prime_UTR
ACAAATGGACATGACATACA+TGG 0.582970 5_1:-5631868 Msa0713480:three_prime_UTR
GTCTGTTTGGAGCTGCAACA+TGG 0.584513 5_1:+5634719 None:intergenic
TAGGCTCCAACCAACCAGAA+TGG 0.584546 5_1:-5631993 Msa0713480:three_prime_UTR
ACTTCACCAATACAAATTCG+TGG 0.586725 5_1:-5637516 Msa0713480:five_prime_UTR
CTGCCAATGATTTACAAGGA+TGG 0.587055 5_1:-5636839 Msa0713480:CDS
TCGACTCCTCAATTAAAACA+AGG 0.587700 5_1:-5634591 Msa0713480:CDS
ATTAACTCCAATATACGAGA+AGG 0.590177 5_1:+5633746 None:intergenic
GTAAAGTGCAGCGCGTTGAA+GGG 0.590995 5_1:+5637600 None:intergenic
TGGTTGGTTGGAGCCTAAGA+GGG 0.591259 5_1:+5631999 None:intergenic
TTGGCAGCATGTTGTTCACA+AGG 0.591380 5_1:-5634887 Msa0713480:intron
TCAAACTGCAGAATATGGCT+GGG 0.595527 5_1:-5632753 Msa0713480:intron
TGATCTGCTTACTTGTGTAG+AGG 0.596929 5_1:-5636898 Msa0713480:five_prime_UTR
CGGTTTGACAAGGCATAATG+TGG 0.597828 5_1:-5633714 Msa0713480:CDS
CCTATAGGTAAAGGTAGCCA+TGG 0.598962 5_1:+5632263 None:intergenic
CGGTTCCAAGGGTGAGAATG+GGG 0.600958 5_1:-5634388 Msa0713480:CDS
ACTACTTGAGATTGCTGACA+AGG 0.601057 5_1:+5636013 None:intergenic
AACTTGCTGGCAGACATGCA+TGG 0.602656 5_1:-5632070 Msa0713480:three_prime_UTR
TTGGAGTTAATGAAAGTCGA+CGG 0.603528 5_1:-5633734 Msa0713480:CDS
AGGAGGCAATAAACAAGCCA+TGG 0.604570 5_1:-5632280 Msa0713480:CDS
AAGTTTCTCGGCAACGCTGG+TGG 0.606145 5_1:-5634342 Msa0713480:CDS
ATTAGAATGATATGGTGGAT+AGG 0.608161 5_1:+5633454 None:intergenic
GCAACTCAGATGGACGCACT+AGG 0.609102 5_1:+5635542 None:intergenic
ATCGAAGAGATCCTATGCAA+AGG 0.609454 5_1:-5633505 Msa0713480:CDS
ATATGCAGGAGCTGGAGGAA+AGG 0.610602 5_1:+5633427 None:intergenic
TAGGTGTCCGTGTTATGGTA+GGG 0.610785 5_1:+5631928 None:intergenic
CCTCACTAAACCACTTTCTG+AGG 0.611321 5_1:-5634926 Msa0713480:CDS
TTACTGTTGATGGTGGTGGG+TGG 0.614628 5_1:-5632103 Msa0713480:three_prime_UTR
CGACTCCTCAATTAAAACAA+GGG 0.616068 5_1:-5634590 Msa0713480:CDS
GTGTTATGGTAGGGACCACA+GGG 0.616784 5_1:+5631937 None:intergenic
ATTGGAAGCCATATCCGCCA+GGG 0.619064 5_1:-5633313 Msa0713480:CDS
GCTCCTGCATATCCTATGTG+GGG 0.621371 5_1:-5633416 Msa0713480:CDS
TTGGATGAACTTTCTAAACA+AGG 0.621400 5_1:-5632212 Msa0713480:CDS
GGCTGCCATAGAGGATAACC+CGG 0.621410 5_1:+5633350 None:intergenic
CCTCAGAAAGTGGTTTAGTG+AGG 0.621536 5_1:+5634926 None:intergenic
CAACACGGAAGTCAAACAGC+TGG 0.623780 5_1:-5633392 Msa0713480:CDS
GGTGGACAAGGCTGTAAAGG+AGG 0.624645 5_1:-5632297 Msa0713480:CDS
ATAGGATATGCAGGAGCTGG+AGG 0.633192 5_1:+5633422 None:intergenic
TGAAAGTCGACGGTTTGACA+AGG 0.634861 5_1:-5633724 Msa0713480:CDS
TATCCTATGTGGGGCCAACA+CGG 0.635664 5_1:-5633407 Msa0713480:CDS
CTTCACCAATACAAATTCGT+GGG 0.636999 5_1:-5637515 Msa0713480:five_prime_UTR
GCTTCAATTCAACAAATGTG+TGG 0.639298 5_1:+5631771 None:intergenic
CAATCAGGCATTCAATGCCG+AGG 0.641798 5_1:-5634790 Msa0713480:intron
TCATGAACAACAAGTCAGCA+TGG 0.646375 5_1:+5632155 None:intergenic
GATGCACAACGCTAAAGCAG+TGG 0.647084 5_1:-5632731 Msa0713480:CDS
GACTCCTCAATTAAAACAAG+GGG 0.647576 5_1:-5634589 Msa0713480:CDS
AACACACTATCCATTGAAGG+AGG 0.656403 5_1:+5632233 None:intergenic
AGACAAATCGAAGAAAACAA+AGG 0.658823 5_1:+5631428 None:intergenic
TAATGAACATGAGAATTCGA+CGG 0.659183 5_1:-5634637 Msa0713480:CDS
GTGTGATTAGAATGATATGG+TGG 0.660247 5_1:+5633449 None:intergenic
CTGTGGTCCCTACCATAACA+CGG 0.660405 5_1:-5631935 Msa0713480:three_prime_UTR
AAAGAAAGTGGGGAACATGA+CGG 0.660506 5_1:-5634513 Msa0713480:CDS
GATGCAGGCAGAGGAAGTGG+TGG 0.661975 5_1:-5632315 Msa0713480:intron
CTTCCATGTTGCCATAGTGG+AGG 0.668416 5_1:-5635982 Msa0713480:intron
TTACCTCCACTATGGCAACA+TGG 0.672571 5_1:+5635979 None:intergenic
TACGAAACCTCTGATTAAGG+CGG 0.686443 5_1:-5634427 Msa0713480:CDS
CAGGTGCATGTGGATGCATG+GGG 0.691891 5_1:-5633162 Msa0713480:CDS
CAAGAGACAGATCATCCACA+CGG 0.695941 5_1:-5633549 Msa0713480:CDS
TTGGAAGCCATATCCGCCAG+GGG 0.704021 5_1:-5633312 Msa0713480:intron
GTGCTAGTTACTGTTGATGG+TGG 0.719464 5_1:-5632110 Msa0713480:three_prime_UTR
TGCCATAGAGGATAACCCGG+AGG 0.746099 5_1:+5633353 None:intergenic
GAAAGTGGGGAACATGACGG+TGG 0.761593 5_1:-5634510 Msa0713480:CDS
TGTTATGGTAGGGACCACAG+GGG 0.833590 5_1:+5631938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGATAAAATTAAACTA+AGG + chr5_1:5632932-5632951 None:intergenic 10.0%
!!! TTTTCTAATTCAATATTTTA+TGG - chr5_1:5634012-5634031 Msa0713480:intron 10.0%
!! AAATAAAAATGACATATATA+TGG - chr5_1:5635464-5635483 Msa0713480:intron 10.0%
!! ATAAAAAACTGTACTTTAAT+TGG + chr5_1:5631921-5631940 None:intergenic 15.0%
!! AAAAATTAACTTTATTCACA+TGG + chr5_1:5632019-5632038 None:intergenic 15.0%
!! TGTTTAAAAAAAATGAAAAG+TGG - chr5_1:5632715-5632734 Msa0713480:intron 15.0%
!!! GTTTAATTTTATCTTTATTG+TGG - chr5_1:5632934-5632953 Msa0713480:intron 15.0%
!! AAGCAAAAAATAAACTAAAA+AGG - chr5_1:5633195-5633214 Msa0713480:intron 15.0%
!! ATTTACTATGAACATTATAT+AGG - chr5_1:5634245-5634264 Msa0713480:intron 15.0%
!! AATATCAATAGATTTAGATA+AGG - chr5_1:5634413-5634432 Msa0713480:CDS 15.0%
!!! TAGAACATCATATATTTTTT+TGG - chr5_1:5635185-5635204 Msa0713480:intron 15.0%
!! ATATCTAATCAAAATTACTT+TGG + chr5_1:5636311-5636330 None:intergenic 15.0%
!! TATTGTAAAATTGATACAAT+TGG - chr5_1:5636555-5636574 Msa0713480:intron 15.0%
!!! TTAATTAATTTGTGATCTCA+TGG - chr5_1:5632137-5632156 Msa0713480:three_prime_UTR 20.0%
!! TTATTCTATTTATGTGCATT+TGG - chr5_1:5632806-5632825 Msa0713480:intron 20.0%
!! AGATAAAATTAAACTAAGGT+TGG + chr5_1:5632928-5632947 None:intergenic 20.0%
!! TAATTAAAATGATGTGAGTA+TGG - chr5_1:5633234-5633253 Msa0713480:intron 20.0%
!! AGTATATATCTTATATTGTC+GGG + chr5_1:5633470-5633489 None:intergenic 20.0%
!! CAGTATATATCTTATATTGT+CGG + chr5_1:5633471-5633490 None:intergenic 20.0%
!! ATATAAGTGACAGTTAAAAT+TGG + chr5_1:5633766-5633785 None:intergenic 20.0%
!! AAAATATATGATGTTCTAAC+CGG + chr5_1:5635183-5635202 None:intergenic 20.0%
!!! TATGAAATAACTGATTTTTC+AGG - chr5_1:5635908-5635927 Msa0713480:intron 20.0%
!! AAAATGACTTGAATTTAAAC+AGG - chr5_1:5636240-5636259 Msa0713480:intron 20.0%
!! AAATGACTTGAATTTAAACA+GGG - chr5_1:5636241-5636260 Msa0713480:intron 20.0%
!!! TATACTATTAATCAAGTTGA+AGG + chr5_1:5636424-5636443 None:intergenic 20.0%
!! AGTAACAATTGTAACATTAA+CGG - chr5_1:5636521-5636540 Msa0713480:intron 20.0%
!!! TATCTAATAATGGAAAGTTT+AGG - chr5_1:5637474-5637493 Msa0713480:intron 20.0%
!!! AATAATGAAATTGGTAATGA+GGG + chr5_1:5637583-5637602 None:intergenic 20.0%
!!! AAATAATGAAATTGGTAATG+AGG + chr5_1:5637584-5637603 None:intergenic 20.0%
!!! TTTTTTTCTGCATATGTTTG+TGG - chr5_1:5631408-5631427 Msa0713480:three_prime_UTR 25.0%
!!! AATTTGTATTGGTGAAGTTT+TGG + chr5_1:5631571-5631590 None:intergenic 25.0%
! TGTATGTTGAAATAATACCT+TGG + chr5_1:5631615-5631634 None:intergenic 25.0%
! ATGTCATTCTATTGAAAAGA+GGG + chr5_1:5632447-5632466 None:intergenic 25.0%
! TCAATAGTCCTTATGTTATA+TGG - chr5_1:5632487-5632506 Msa0713480:intron 25.0%
! TAAGATCAAGCATCAAAAAA+AGG + chr5_1:5632614-5632633 None:intergenic 25.0%
!! TAAAAAGGATTTTGTCTAGT+AGG - chr5_1:5633210-5633229 Msa0713480:intron 25.0%
! CATTACAATATACTACAACT+TGG + chr5_1:5633440-5633459 None:intergenic 25.0%
! GGTTATAAATCATATGATCA+AGG + chr5_1:5633529-5633548 None:intergenic 25.0%
! CAGTTAAAATTGGATTTGAA+AGG + chr5_1:5633756-5633775 None:intergenic 25.0%
! ATGAAAAATTGCAAGTATCA+TGG + chr5_1:5633857-5633876 None:intergenic 25.0%
!!! CATTTTTTCTGTTTATAGCT+TGG - chr5_1:5634128-5634147 Msa0713480:intron 25.0%
! ATGTTCATTATCACTAAACT+TGG + chr5_1:5634442-5634461 None:intergenic 25.0%
!!! TTTCCAAAGTTTTGTATAAC+CGG - chr5_1:5635037-5635056 Msa0713480:intron 25.0%
! AAATATATGATGTTCTAACC+GGG + chr5_1:5635182-5635201 None:intergenic 25.0%
! ACAAAATAATTACCTGAAGA+TGG + chr5_1:5635405-5635424 None:intergenic 25.0%
! ATATGTATCTATCACTATTC+TGG - chr5_1:5635434-5635453 Msa0713480:intron 25.0%
!!! ATTTTTTCCGTTCATATGTA+TGG - chr5_1:5635834-5635853 Msa0713480:intron 25.0%
!! CTTTGCTAGTTATTTAAGAT+AGG - chr5_1:5636091-5636110 Msa0713480:intron 25.0%
! TCTAACACAGACATTAAAAA+TGG + chr5_1:5636189-5636208 None:intergenic 25.0%
!! GTCTTACATATGATGTTTTT+CGG + chr5_1:5636275-5636294 None:intergenic 25.0%
! TGATTAATAGTATAGCTCAA+TGG - chr5_1:5636430-5636449 Msa0713480:intron 25.0%
! AATTGTAACATTAACGGTTT+AGG - chr5_1:5636527-5636546 Msa0713480:intron 25.0%
! CCTTTCTATTATTCAAACTT+AGG + chr5_1:5636626-5636645 None:intergenic 25.0%
! CCTAAGTTTGAATAATAGAA+AGG - chr5_1:5636623-5636642 Msa0713480:intron 25.0%
!!! GTATTTGTTATCTTTTGAAC+CGG - chr5_1:5636711-5636730 Msa0713480:intron 25.0%
! ATTCTTGTTCTAACGATATT+TGG - chr5_1:5636734-5636753 Msa0713480:intron 25.0%
! AATGGTAGATTAGATTAAGT+TGG - chr5_1:5637114-5637133 Msa0713480:intron 25.0%
! ATGGTAGATTAGATTAAGTT+GGG - chr5_1:5637115-5637134 Msa0713480:intron 25.0%
!!! ATTTTTTTGGTTTTAGCAAG+TGG + chr5_1:5637270-5637289 None:intergenic 25.0%
!! AAAAATTGGTAGCTAAAAAC+TGG - chr5_1:5637295-5637314 Msa0713480:intron 25.0%
! GTTCAGATACAAAAAATTGA+TGG - chr5_1:5637376-5637395 Msa0713480:intron 25.0%
! AACACTAACACAAAAAACAT+AGG + chr5_1:5637430-5637449 None:intergenic 25.0%
! CATTATTAGATAACTCTACT+AGG + chr5_1:5637466-5637485 None:intergenic 25.0%
! CTAGTAGAGTTATCTAATAA+TGG - chr5_1:5637464-5637483 Msa0713480:intron 25.0%
!! TAATAATGGAAAGTTTAGGT+AGG - chr5_1:5637478-5637497 Msa0713480:intron 25.0%
! ACGAGCTAAAATAATGAAAT+TGG + chr5_1:5637592-5637611 None:intergenic 25.0%
! GTTCATTCTCTCTTTCTTTT+TGG - chr5_1:5631675-5631694 Msa0713480:three_prime_UTR 30.0%
TTTCCATCCTTGTAAATCAT+TGG + chr5_1:5632256-5632275 None:intergenic 30.0%
AAGAACAAAGCTTGAATCTA+TGG - chr5_1:5632338-5632357 Msa0713480:intron 30.0%
! CTTGAATCTATGGACTATAA+TGG - chr5_1:5632348-5632367 Msa0713480:intron 30.0%
! TTGATCCCATATTTTTCGTT+TGG - chr5_1:5632380-5632399 Msa0713480:intron 30.0%
TGTCATTCTATTGAAAAGAG+GGG + chr5_1:5632446-5632465 None:intergenic 30.0%
GATGTCATTCTATTGAAAAG+AGG + chr5_1:5632448-5632467 None:intergenic 30.0%
TAGAATGACATCTTGTAAAG+TGG - chr5_1:5632456-5632475 Msa0713480:intron 30.0%
AAAAGTGGTCCAAATTCTAA+AGG - chr5_1:5632730-5632749 Msa0713480:CDS 30.0%
! TCCAAATTCTAAAGGTAATG+TGG - chr5_1:5632738-5632757 Msa0713480:CDS 30.0%
!! TCCACATTACCTTTAGAATT+TGG + chr5_1:5632742-5632761 None:intergenic 30.0%
ATATTCGCATGGAAACTAAA+AGG + chr5_1:5632842-5632861 None:intergenic 30.0%
AGAAACTGTATAGAAAAGTG+AGG + chr5_1:5633034-5633053 None:intergenic 30.0%
!! ATGATTTTCTGTCATTTCTG+CGG + chr5_1:5633150-5633169 None:intergenic 30.0%
CTAAAAGATACTTTCTGCAA+AGG - chr5_1:5633308-5633327 Msa0713480:intron 30.0%
! TTTTCATCTTATGCGTTACT+CGG - chr5_1:5633383-5633402 Msa0713480:CDS 30.0%
GTTGTGTACTTACTAATAGT+TGG + chr5_1:5633632-5633651 None:intergenic 30.0%
TATATGAGAGCAGACAAATT+AGG + chr5_1:5633659-5633678 None:intergenic 30.0%
!! AACTTCTAGGAAGTACATTT+TGG + chr5_1:5633716-5633735 None:intergenic 30.0%
AGGACAAGCTGAAAAATATT+TGG - chr5_1:5634183-5634202 Msa0713480:intron 30.0%
GTTGTTGAATTCAATCAATC+AGG - chr5_1:5634284-5634303 Msa0713480:CDS 30.0%
TAATGAACATGAGAATTCGA+CGG - chr5_1:5634452-5634471 Msa0713480:CDS 30.0%
TGCTCAATAGAAAAAGAAAG+TGG - chr5_1:5634564-5634583 Msa0713480:CDS 30.0%
GCTCAATAGAAAAAGAAAGT+GGG - chr5_1:5634565-5634584 Msa0713480:CDS 30.0%
CTCAATAGAAAAAGAAAGTG+GGG - chr5_1:5634566-5634585 Msa0713480:CDS 30.0%
CCACAGAATAAAAAGTTTCT+CGG - chr5_1:5634735-5634754 Msa0713480:CDS 30.0%
!! TTAACAGCACGTGTTTTATT+TGG + chr5_1:5634783-5634802 None:intergenic 30.0%
CATGTGAGAATAAAGCTAAT+CGG - chr5_1:5634808-5634827 Msa0713480:intron 30.0%
!! AAGTTGATATCTATAGCACT+AGG - chr5_1:5634993-5635012 Msa0713480:intron 30.0%
!!! TTGCATATCCTTATTTTTCC+CGG - chr5_1:5635161-5635180 Msa0713480:intron 30.0%
TGATTATCTGATTACACTTC+TGG - chr5_1:5635230-5635249 Msa0713480:intron 30.0%
ATTAACTCCAATATACGAGA+AGG + chr5_1:5635346-5635365 None:intergenic 30.0%
ATACAATAGTTCCTTTGCAT+AGG + chr5_1:5635598-5635617 None:intergenic 30.0%
!! ATTAGAATGATATGGTGGAT+AGG + chr5_1:5635638-5635657 None:intergenic 30.0%
AAGGTGTGATTAGAATGATA+TGG + chr5_1:5635646-5635665 None:intergenic 30.0%
! TTTTTATCCGAAATCAAAGC+AGG - chr5_1:5635805-5635824 Msa0713480:intron 30.0%
! TGTATATCCTGCTTTGATTT+CGG + chr5_1:5635815-5635834 None:intergenic 30.0%
AAACAAGCCATACATATGAA+CGG + chr5_1:5635844-5635863 None:intergenic 30.0%
AAGTCAGCAAATTGAATACT+TGG - chr5_1:5636001-5636020 Msa0713480:CDS 30.0%
CACATGCTTGAATTAACTAT+TGG + chr5_1:5636059-5636078 None:intergenic 30.0%
TTTCATCAAACTGCAGAATA+TGG - chr5_1:5636331-5636350 Msa0713480:intron 30.0%
! CAAGTTGAAGGAAACATAAA+GGG + chr5_1:5636412-5636431 None:intergenic 30.0%
!! TCAAGTTGAAGGAAACATAA+AGG + chr5_1:5636413-5636432 None:intergenic 30.0%
CAGTATTACACACCAATTAA+GGG + chr5_1:5636489-5636508 None:intergenic 30.0%
ACAGTATTACACACCAATTA+AGG + chr5_1:5636490-5636509 None:intergenic 30.0%
ATATCGTTAGAACAAGAATC+CGG + chr5_1:5636733-5636752 None:intergenic 30.0%
TGTGTTATATTCATTGATGC+AGG - chr5_1:5636759-5636778 Msa0713480:CDS 30.0%
TTGGATGAACTTTCTAAACA+AGG - chr5_1:5636877-5636896 Msa0713480:five_prime_UTR 30.0%
! TTGTTGTTCATGACTCAAAT+GGG - chr5_1:5636944-5636963 Msa0713480:intron 30.0%
GATTATTACAACAGTCCATA+TGG + chr5_1:5637052-5637071 None:intergenic 30.0%
CTTAATCTAATCTACCATTC+TGG + chr5_1:5637113-5637132 None:intergenic 30.0%
TAGGTACAAACTTCAATTGA+TGG + chr5_1:5637411-5637430 None:intergenic 30.0%
!!! GTTTTTTGTGTTAGTGTTGT+TGG - chr5_1:5637432-5637451 Msa0713480:intron 30.0%
AGCATGTAGTAACAATTATG+AGG - chr5_1:5637634-5637653 Msa0713480:five_prime_UTR 30.0%
AGACAAATCGAAGAAAACAA+AGG + chr5_1:5637664-5637683 None:intergenic 30.0%
ACTTCACCAATACAAATTCG+TGG - chr5_1:5631573-5631592 Msa0713480:three_prime_UTR 35.0%
CTTCACCAATACAAATTCGT+GGG - chr5_1:5631574-5631593 Msa0713480:three_prime_UTR 35.0%
TACCTTGGCTGAAAAGAAAA+TGG + chr5_1:5631600-5631619 None:intergenic 35.0%
!! TTGTCTTGTTGTGGTGTTAT+TGG - chr5_1:5631794-5631813 Msa0713480:three_prime_UTR 35.0%
TTTCTCCACAAGATCTTAAC+TGG - chr5_1:5631820-5631839 Msa0713480:three_prime_UTR 35.0%
TTCTCCACAAGATCTTAACT+GGG - chr5_1:5631821-5631840 Msa0713480:three_prime_UTR 35.0%
AAAACCCAGTTAAGATCTTG+TGG + chr5_1:5631828-5631847 None:intergenic 35.0%
TTGTGTAGAGGACTAGAAAA+AGG - chr5_1:5632203-5632222 Msa0713480:CDS 35.0%
AAGATTTCCCAAAAGGACTT+AGG - chr5_1:5632274-5632293 Msa0713480:CDS 35.0%
AGATTTCCCAAAAGGACTTA+GGG - chr5_1:5632275-5632294 Msa0713480:CDS 35.0%
GCAAGCCAAACGAAAAATAT+GGG + chr5_1:5632388-5632407 None:intergenic 35.0%
ACCATCTTTACTAAGGAAAG+TGG + chr5_1:5632423-5632442 None:intergenic 35.0%
CCAGAGAACCATATAACATA+AGG + chr5_1:5632498-5632517 None:intergenic 35.0%
CCTTATGTTATATGGTTCTC+TGG - chr5_1:5632495-5632514 Msa0713480:intron 35.0%
! TATGGTTCTCTGGAAATTTG+TGG - chr5_1:5632505-5632524 Msa0713480:intron 35.0%
TTGATCTTAGCATATGTGTG+TGG - chr5_1:5632625-5632644 Msa0713480:intron 35.0%
! TCAGTTTTCCACGATAAAGT+CGG + chr5_1:5632784-5632803 None:intergenic 35.0%
CCAACTAATACATATTCGCA+TGG + chr5_1:5632853-5632872 None:intergenic 35.0%
CCATGCGAATATGTATTAGT+TGG - chr5_1:5632850-5632869 Msa0713480:intron 35.0%
AAAGTTCATTACCTCCACTA+TGG + chr5_1:5633121-5633140 None:intergenic 35.0%
! TTTAGAACCTAAACTTCTGC+AGG + chr5_1:5633293-5633312 None:intergenic 35.0%
GACTTCACTCACTTAATACT+AGG + chr5_1:5633361-5633380 None:intergenic 35.0%
! GAAATTTGAAACCTCCATCA+GGG + chr5_1:5633589-5633608 None:intergenic 35.0%
! AGAAATTTGAAACCTCCATC+AGG + chr5_1:5633590-5633609 None:intergenic 35.0%
ATAAAGATCCATCCATGTTG+AGG - chr5_1:5633676-5633695 Msa0713480:intron 35.0%
TAAAGATCCATCCATGTTGA+GGG - chr5_1:5633677-5633696 Msa0713480:intron 35.0%
ACTTCCTAGAAGTTGAAAGA+AGG - chr5_1:5633722-5633741 Msa0713480:CDS 35.0%
TTTGCCTTCTTTCAACTTCT+AGG + chr5_1:5633729-5633748 None:intergenic 35.0%
ATATTGAGCTACACATCACT+AGG + chr5_1:5633952-5633971 None:intergenic 35.0%
!!! TGTTTTAATTGAGGAGTCGA+AGG + chr5_1:5634498-5634517 None:intergenic 35.0%
TCGACTCCTCAATTAAAACA+AGG - chr5_1:5634498-5634517 Msa0713480:CDS 35.0%
CGACTCCTCAATTAAAACAA+GGG - chr5_1:5634499-5634518 Msa0713480:CDS 35.0%
GACTCCTCAATTAAAACAAG+GGG - chr5_1:5634500-5634519 Msa0713480:CDS 35.0%
! CCGAGAAACTTTTTATTCTG+TGG + chr5_1:5634738-5634757 None:intergenic 35.0%
!! CGATTAGCTTTATTCTCACA+TGG + chr5_1:5634810-5634829 None:intergenic 35.0%
ATCGGAAGAAGATGAAAGTA+AGG - chr5_1:5634826-5634845 Msa0713480:intron 35.0%
TGATATCTATAGCACTAGGA+TGG - chr5_1:5634997-5635016 Msa0713480:intron 35.0%
TGACCGGTTATACAAAACTT+TGG + chr5_1:5635043-5635062 None:intergenic 35.0%
ATCATGTTGGGAATATTGAC+CGG + chr5_1:5635059-5635078 None:intergenic 35.0%
TGTTCTAACCGGGAAAAATA+AGG + chr5_1:5635172-5635191 None:intergenic 35.0%
!!! AAATTTTTTGTGCAGCTCAG+CGG + chr5_1:5635284-5635303 None:intergenic 35.0%
GCTGCACAAAAAATTTGTGA+AGG - chr5_1:5635288-5635307 Msa0713480:intron 35.0%
CAAAAAATTTGTGAAGGCAG+TGG - chr5_1:5635294-5635313 Msa0713480:intron 35.0%
TTGGAGTTAATGAAAGTCGA+CGG - chr5_1:5635355-5635374 Msa0713480:intron 35.0%
TTGTATGCAAAGACCGATTA+TGG - chr5_1:5635612-5635631 Msa0713480:intron 35.0%
GTGTGATTAGAATGATATGG+TGG + chr5_1:5635643-5635662 None:intergenic 35.0%
ATCCATGATTTCTACATCAC+AGG + chr5_1:5635879-5635898 None:intergenic 35.0%
!! AGCAGTGGATTATAGTTATC+CGG - chr5_1:5636373-5636392 Msa0713480:intron 35.0%
TAGAACATGAGATTTGATCG+TGG + chr5_1:5636588-5636607 None:intergenic 35.0%
!! CTTGTTGTTCATGACTCAAA+TGG - chr5_1:5636943-5636962 Msa0713480:intron 35.0%
! TCTCTCAATTTTACCCTCTT+AGG - chr5_1:5637077-5637096 Msa0713480:intron 35.0%
ATCTAATCTACCATTCTGGT+TGG + chr5_1:5637109-5637128 None:intergenic 35.0%
ACAATGATGCATGCAACAAA+TGG - chr5_1:5637206-5637225 Msa0713480:intron 35.0%
ACAAATGGACATGACATACA+TGG - chr5_1:5637221-5637240 Msa0713480:intron 35.0%
ATGACATACATGGATGATGA+TGG - chr5_1:5637231-5637250 Msa0713480:intron 35.0%
GCTTCAATTCAACAAATGTG+TGG + chr5_1:5637321-5637340 None:intergenic 35.0%
TAGTGCAAAAATGTTGCATG+TGG - chr5_1:5637343-5637362 Msa0713480:intron 35.0%
! TTGTGTTAGTGTTGTTGGAT+AGG - chr5_1:5637437-5637456 Msa0713480:intron 35.0%
! TGTGTTAGTGTTGTTGGATA+GGG - chr5_1:5637438-5637457 Msa0713480:intron 35.0%
! GAAAGTATGAAGAGAGAGAG+AGG + chr5_1:5631514-5631533 None:intergenic 40.0%
AATGGCCCACGAATTTGTAT+TGG + chr5_1:5631582-5631601 None:intergenic 40.0%
!!! GTGCTAGTTTTGTCTTGTTG+TGG - chr5_1:5631785-5631804 Msa0713480:three_prime_UTR 40.0%
GCAGAAGAACAAGAACAGAT+TGG - chr5_1:5632165-5632184 Msa0713480:exon 40.0%
TGATCTGCTTACTTGTGTAG+AGG - chr5_1:5632191-5632210 Msa0713480:CDS 40.0%
TGCACTGCCAATGATTTACA+AGG - chr5_1:5632246-5632265 Msa0713480:CDS 40.0%
CTGCCAATGATTTACAAGGA+TGG - chr5_1:5632250-5632269 Msa0713480:CDS 40.0%
GGATGGAAAGATTTCCCAAA+AGG - chr5_1:5632267-5632286 Msa0713480:CDS 40.0%
! GAAGAACCCTAAGTCCTTTT+GGG + chr5_1:5632284-5632303 None:intergenic 40.0%
! AGAAGAACCCTAAGTCCTTT+TGG + chr5_1:5632285-5632304 None:intergenic 40.0%
CAGAATTGTTGTCTCCTTCA+AGG + chr5_1:5632308-5632327 None:intergenic 40.0%
GGCAAGCCAAACGAAAAATA+TGG + chr5_1:5632389-5632408 None:intergenic 40.0%
! GCCACTTTCCTTAGTAAAGA+TGG - chr5_1:5632419-5632438 Msa0713480:intron 40.0%
CAACATGCAACTAAAACCAC+AGG + chr5_1:5632531-5632550 None:intergenic 40.0%
TGTGTGGAATTTGACTCTAG+AGG - chr5_1:5632641-5632660 Msa0713480:intron 40.0%
GTGTGGAATTTGACTCTAGA+GGG - chr5_1:5632642-5632661 Msa0713480:intron 40.0%
! TGACTCTAGAGGGCTTATAA+AGG - chr5_1:5632652-5632671 Msa0713480:intron 40.0%
TCATGATTCCGACTTTATCG+TGG - chr5_1:5632773-5632792 Msa0713480:intron 40.0%
ACTACTTGAGATTGCTGACA+AGG + chr5_1:5633079-5633098 None:intergenic 40.0%
!! ATGGCAACATGGAAGCATTT+GGG + chr5_1:5633102-5633121 None:intergenic 40.0%
!! TATGGCAACATGGAAGCATT+TGG + chr5_1:5633103-5633122 None:intergenic 40.0%
TGTGAGTATGGAGAACTTGA+CGG - chr5_1:5633246-5633265 Msa0713480:intron 40.0%
TTTGTGTCCTGCAGAAGTTT+AGG - chr5_1:5633283-5633302 Msa0713480:intron 40.0%
TGCGTTACTCGGATTTATCA+TGG - chr5_1:5633394-5633413 Msa0713480:CDS 40.0%
CAAATTTCTCGAGAATGCGA+AGG - chr5_1:5633601-5633620 Msa0713480:intron 40.0%
ACTAGTAAACACCCTCAACA+TGG + chr5_1:5633691-5633710 None:intergenic 40.0%
CACAATGATGAAGTGCATTG+CGG - chr5_1:5633906-5633925 Msa0713480:intron 40.0%
! AGTGCATTGCGGTAAGATTT+TGG - chr5_1:5633917-5633936 Msa0713480:intron 40.0%
TCTGTCTGAATCGCTTAAAC+CGG - chr5_1:5634329-5634348 Msa0713480:CDS 40.0%
GACTCTACAGATTCTTTGAC+CGG + chr5_1:5634351-5634370 None:intergenic 40.0%
!!! CTTGCCCCTTGTTTTAATTG+AGG + chr5_1:5634507-5634526 None:intergenic 40.0%
CTCAATTAAAACAAGGGGCA+AGG - chr5_1:5634505-5634524 Msa0713480:CDS 40.0%
! TTGAGCAATTAGTCTGCTCA+TGG + chr5_1:5634551-5634570 None:intergenic 40.0%
AAAGAAAGTGGGGAACATGA+CGG - chr5_1:5634576-5634595 Msa0713480:CDS 40.0%
ACCTACGAAACCTCTGATTA+AGG - chr5_1:5634659-5634678 Msa0713480:CDS 40.0%
TACGAAACCTCTGATTAAGG+CGG - chr5_1:5634662-5634681 Msa0713480:CDS 40.0%
AATGGTACAGAGAAAGAGGA+AGG + chr5_1:5634955-5634974 None:intergenic 40.0%
TGCAAATGGTACAGAGAAAG+AGG + chr5_1:5634959-5634978 None:intergenic 40.0%
CATGAGTGTGTGTATGCAAA+TGG + chr5_1:5634973-5634992 None:intergenic 40.0%
!! CTGATTACACTTCTGGTTCT+TGG - chr5_1:5635237-5635256 Msa0713480:intron 40.0%
!!! ACACTTCTGGTTCTTGGTTT+TGG - chr5_1:5635243-5635262 Msa0713480:intron 40.0%
AGCCATTCCTTCTCGTATAT+TGG - chr5_1:5635336-5635355 Msa0713480:intron 40.0%
CTCCAATATACGAGAAGGAA+TGG + chr5_1:5635341-5635360 None:intergenic 40.0%
TGCATAGGATCTCTTCGATT+TGG + chr5_1:5635583-5635602 None:intergenic 40.0%
ATCGAAGAGATCCTATGCAA+AGG - chr5_1:5635584-5635603 Msa0713480:intron 40.0%
!! TATGGTGGATAGGCCATAAT+CGG + chr5_1:5635628-5635647 None:intergenic 40.0%
TTCCAATGCCAACTTTCTGT+AGG + chr5_1:5635763-5635782 None:intergenic 40.0%
GATAAAAAGATTACCCCTGG+CGG + chr5_1:5635793-5635812 None:intergenic 40.0%
TCGGATAAAAAGATTACCCC+TGG + chr5_1:5635796-5635815 None:intergenic 40.0%
GACCTGTGATGTAGAAATCA+TGG - chr5_1:5635874-5635893 Msa0713480:intron 40.0%
!!! ACTGATTTTTCAGGTGCATG+TGG - chr5_1:5635917-5635936 Msa0713480:intron 40.0%
TAAGGGATACAGTGAGTTTG+AGG + chr5_1:5635972-5635991 None:intergenic 40.0%
! GCTGACTTACTTGAGTGTAA+GGG + chr5_1:5635989-5636008 None:intergenic 40.0%
!! TGCTGACTTACTTGAGTGTA+AGG + chr5_1:5635990-5636009 None:intergenic 40.0%
ATCAAACTGCAGAATATGGC+TGG - chr5_1:5636335-5636354 Msa0713480:intron 40.0%
TCAAACTGCAGAATATGGCT+GGG - chr5_1:5636336-5636355 Msa0713480:intron 40.0%
AAAGGGAAGAACTGCATTAC+CGG + chr5_1:5636395-5636414 None:intergenic 40.0%
CAATAACCGTTCCTACAATG+TGG - chr5_1:5636459-5636478 Msa0713480:intron 40.0%
ATATTCATTGATGCAGGCAG+AGG - chr5_1:5636765-5636784 Msa0713480:CDS 40.0%
TATCCATTGAAGGAGGTTTG+AGG + chr5_1:5636852-5636871 None:intergenic 40.0%
AACACACTATCCATTGAAGG+AGG + chr5_1:5636859-5636878 None:intergenic 40.0%
TCCTTCAATGGATAGTGTGT+TGG - chr5_1:5636858-5636877 Msa0713480:exon 40.0%
TCCAACACACTATCCATTGA+AGG + chr5_1:5636862-5636881 None:intergenic 40.0%
! TCCTTTTAGCAAGAAGAGCA+AGG - chr5_1:5636903-5636922 Msa0713480:five_prime_UTR 40.0%
! CCTTTTAGCAAGAAGAGCAA+GGG - chr5_1:5636904-5636923 Msa0713480:five_prime_UTR 40.0%
TCATGAACAACAAGTCAGCA+TGG + chr5_1:5636937-5636956 None:intergenic 40.0%
AGTAACTAGCACTGTTTGGT+GGG + chr5_1:5636971-5636990 None:intergenic 40.0%
CAACAGTAACTAGCACTGTT+TGG + chr5_1:5636975-5636994 None:intergenic 40.0%
ACAGTGCTAGTTACTGTTGA+TGG - chr5_1:5636976-5636995 Msa0713480:intron 40.0%
!! TAGTTACTGTTGATGGTGGT+GGG - chr5_1:5636983-5637002 Msa0713480:intron 40.0%
TACAACAGTCCATATGGCAT+TGG + chr5_1:5637046-5637065 None:intergenic 40.0%
! AATCTACCATTCTGGTTGGT+TGG + chr5_1:5637105-5637124 None:intergenic 40.0%
TCATTTCCCAGAAGCTACAT+AGG + chr5_1:5637183-5637202 None:intergenic 40.0%
! GTGTTAGTGTTGTTGGATAG+GGG - chr5_1:5637439-5637458 Msa0713480:intron 40.0%
! TGTTAGTGTTGTTGGATAGG+GGG - chr5_1:5637440-5637459 Msa0713480:intron 40.0%
GGAAAGTTTAGGTAGGAAGT+AGG - chr5_1:5637485-5637504 Msa0713480:intron 40.0%
TGATTGATGAGTCCAGTCTT+TGG - chr5_1:5637542-5637561 Msa0713480:five_prime_UTR 40.0%
!! GGCCATTTTCTTTTCAGCCA+AGG - chr5_1:5631595-5631614 Msa0713480:three_prime_UTR 45.0%
AAAGGATGCCAAACCAGCTA+TGG - chr5_1:5632221-5632240 Msa0713480:CDS 45.0%
AGTGCAAACCATAGCTGGTT+TGG + chr5_1:5632232-5632251 None:intergenic 45.0%
CTTAGGGTTCTTCTCCTTGA+AGG - chr5_1:5632291-5632310 Msa0713480:CDS 45.0%
AGGAAAGTGGCAAAGAAGTG+AGG + chr5_1:5632410-5632429 None:intergenic 45.0%
AGAGGGGACCATCTTTACTA+AGG + chr5_1:5632430-5632449 None:intergenic 45.0%
ATGCTTCCATGTTGCCATAG+TGG - chr5_1:5633104-5633123 Msa0713480:intron 45.0%
TTACCTCCACTATGGCAACA+TGG + chr5_1:5633113-5633132 None:intergenic 45.0%
ATACTCACCTGCAACTCAGA+TGG + chr5_1:5633560-5633579 None:intergenic 45.0%
GAGAGCAGACAAATTAGGCT+CGG + chr5_1:5633654-5633673 None:intergenic 45.0%
GTAAACACCCTCAACATGGA+TGG + chr5_1:5633687-5633706 None:intergenic 45.0%
TGCATCGAAAATCAGGAGGA+CGG + chr5_1:5634088-5634107 None:intergenic 45.0%
CGTATGCATCGAAAATCAGG+AGG + chr5_1:5634092-5634111 None:intergenic 45.0%
GCACGTATGCATCGAAAATC+AGG + chr5_1:5634095-5634114 None:intergenic 45.0%
CCTCAGAAAGTGGTTTAGTG+AGG + chr5_1:5634166-5634185 None:intergenic 45.0%
CCTCACTAAACCACTTTCTG+AGG - chr5_1:5634163-5634182 Msa0713480:intron 45.0%
TTCAGCTTGTCCTCAGAAAG+TGG + chr5_1:5634176-5634195 None:intergenic 45.0%
TTGGCAGCATGTTGTTCACA+AGG - chr5_1:5634202-5634221 Msa0713480:intron 45.0%
AGCATGTTGTTCACAAGGTC+TGG - chr5_1:5634207-5634226 Msa0713480:intron 45.0%
CATGTAGTGCGTTGTCTGTT+TGG + chr5_1:5634386-5634405 None:intergenic 45.0%
GACGGCAAGCGATAAATATC+CGG - chr5_1:5634470-5634489 Msa0713480:CDS 45.0%
AAAACAAGGGGCAAGGTTAG+TGG - chr5_1:5634512-5634531 Msa0713480:CDS 45.0%
ATCAGAGGTTTCGTAGGTTG+AGG + chr5_1:5634657-5634676 None:intergenic 45.0%
GCCTTAATCAGAGGTTTCGT+AGG + chr5_1:5634663-5634682 None:intergenic 45.0%
TCTTCTTCCGCCTTAATCAG+AGG + chr5_1:5634672-5634691 None:intergenic 45.0%
! GCGGAAGAAGATTTTGCCAA+CGG - chr5_1:5634681-5634700 Msa0713480:CDS 45.0%
! AGATTTTGCCAACGGTTCCA+AGG - chr5_1:5634689-5634708 Msa0713480:CDS 45.0%
! GATTTTGCCAACGGTTCCAA+GGG - chr5_1:5634690-5634709 Msa0713480:CDS 45.0%
AAAAAGTTTCTCGGCAACGC+TGG - chr5_1:5634744-5634763 Msa0713480:CDS 45.0%
CAGAGAAAGAGGAAGGAGAA+GGG + chr5_1:5634948-5634967 None:intergenic 45.0%
ACAGAGAAAGAGGAAGGAGA+AGG + chr5_1:5634949-5634968 None:intergenic 45.0%
GCATGCAGATGCATCATGTT+GGG + chr5_1:5635071-5635090 None:intergenic 45.0%
AGCATGCAGATGCATCATGT+TGG + chr5_1:5635072-5635091 None:intergenic 45.0%
!!! CTGGTTCTTGGTTTTGGTTC+AGG - chr5_1:5635249-5635268 Msa0713480:intron 45.0%
!!! TGGTTTTGGTTCAGGTAGAC+TGG - chr5_1:5635257-5635276 Msa0713480:intron 45.0%
TAATGTGGCAAGCCATCTTC+AGG - chr5_1:5635390-5635409 Msa0713480:intron 45.0%
CAAGAGACAGATCATCCACA+CGG - chr5_1:5635540-5635559 Msa0713480:CDS 45.0%
! ATTTTCGATCTTCGTCCGTG+TGG + chr5_1:5635558-5635577 None:intergenic 45.0%
ACACGGACGAAGATCGAAAA+TGG - chr5_1:5635557-5635576 Msa0713480:CDS 45.0%
AGCTCCTGCATATCCTATGT+GGG - chr5_1:5635672-5635691 Msa0713480:intron 45.0%
!! AAACAGCTGGTGTACCGATT+TGG - chr5_1:5635710-5635729 Msa0713480:intron 45.0%
TATGGCAGCCTACAGAAAGT+TGG - chr5_1:5635752-5635771 Msa0713480:intron 45.0%
AGCCTACAGAAAGTTGGCAT+TGG - chr5_1:5635758-5635777 Msa0713480:intron 45.0%
! TTTGAGGTGGAGGCAACATT+GGG + chr5_1:5635956-5635975 None:intergenic 45.0%
! ATACAGTGAGTTTGAGGTGG+AGG + chr5_1:5635966-5635985 None:intergenic 45.0%
TTAAGGGTCGACCACATTGT+AGG + chr5_1:5636473-5636492 None:intergenic 45.0%
CAATGTGGTCGACCCTTAAT+TGG - chr5_1:5636474-5636493 Msa0713480:intron 45.0%
! CAGAGTGTCCAACTATAGTG+CGG + chr5_1:5636657-5636676 None:intergenic 45.0%
AGGAGGCAATAAACAAGCCA+TGG - chr5_1:5636809-5636828 Msa0713480:CDS 45.0%
CCTATAGGTAAAGGTAGCCA+TGG + chr5_1:5636829-5636848 None:intergenic 45.0%
CCATGGCTACCTTTACCTAT+AGG - chr5_1:5636826-5636845 Msa0713480:CDS 45.0%
! GGTTTGAGGCCTATAGGTAA+AGG + chr5_1:5636838-5636857 None:intergenic 45.0%
CCCTTGCTCTTCTTGCTAAA+AGG + chr5_1:5636907-5636926 None:intergenic 45.0%
CAGTAACTAGCACTGTTTGG+TGG + chr5_1:5636972-5636991 None:intergenic 45.0%
! GTGCTAGTTACTGTTGATGG+TGG - chr5_1:5636979-5636998 Msa0713480:intron 45.0%
!! CTAGTTACTGTTGATGGTGG+TGG - chr5_1:5636982-5637001 Msa0713480:intron 45.0%
!!! GACCAGTTATTTTTCCCCTG+TGG - chr5_1:5637137-5637156 Msa0713480:intron 45.0%
GACCACAGGGGAAAAATAAC+TGG + chr5_1:5637142-5637161 None:intergenic 45.0%
TAGGTGTCCGTGTTATGGTA+GGG + chr5_1:5637164-5637183 None:intergenic 45.0%
ATAGGTGTCCGTGTTATGGT+AGG + chr5_1:5637165-5637184 None:intergenic 45.0%
CTACATAGGTGTCCGTGTTA+TGG + chr5_1:5637169-5637188 None:intergenic 45.0%
TTGATGAGTCCAGTCTTTGG+CGG - chr5_1:5637545-5637564 Msa0713480:five_prime_UTR 45.0%
AGTTAGTATCCGCCAAAGAC+TGG + chr5_1:5637557-5637576 None:intergenic 45.0%
!!! CAATTTTTTATTTATTTTTT+TGG + chr5_1:5637283-5637302 None:intergenic 5.0%
!! CAAAAAAATAAATAAAAAAT+TGG - chr5_1:5637281-5637300 Msa0713480:intron 5.0%
GTAAAGTGCAGCGCGTTGAA+GGG + chr5_1:5631492-5631511 None:intergenic 50.0%
TTGGCAGTGCAAACCATAGC+TGG + chr5_1:5632237-5632256 None:intergenic 50.0%
! CTCTGGAAATTTGTGGCCTG+TGG - chr5_1:5632512-5632531 Msa0713480:intron 50.0%
CTTCCATGTTGCCATAGTGG+AGG - chr5_1:5633107-5633126 Msa0713480:intron 50.0%
GTGAGTATAAGCTGCCCTGA+TGG - chr5_1:5633572-5633591 Msa0713480:intron 50.0%
AGTATAAGCTGCCCTGATGG+AGG - chr5_1:5633575-5633594 Msa0713480:intron 50.0%
CAATCAGGCATTCAATGCCG+AGG - chr5_1:5634299-5634318 Msa0713480:CDS 50.0%
! GTCTGTTTGGAGCTGCAACA+TGG + chr5_1:5634373-5634392 None:intergenic 50.0%
AATTGAGGAGTCGAAGGAGC+CGG + chr5_1:5634492-5634511 None:intergenic 50.0%
ATTCTCACCCTTGGAACCGT+TGG + chr5_1:5634700-5634719 None:intergenic 50.0%
AACGGTTCCAAGGGTGAGAA+TGG - chr5_1:5634699-5634718 Msa0713480:CDS 50.0%
ACGGTTCCAAGGGTGAGAAT+GGG - chr5_1:5634700-5634719 Msa0713480:CDS 50.0%
GTGAAGGCAGTGGAACATCT+AGG - chr5_1:5635304-5635323 Msa0713480:intron 50.0%
ATATGCAGGAGCTGGAGGAA+AGG + chr5_1:5635665-5635684 None:intergenic 50.0%
ATAGGATATGCAGGAGCTGG+AGG + chr5_1:5635670-5635689 None:intergenic 50.0%
CACATAGGATATGCAGGAGC+TGG + chr5_1:5635673-5635692 None:intergenic 50.0%
CAGCTCCTGCATATCCTATG+TGG - chr5_1:5635671-5635690 Msa0713480:intron 50.0%
GCTCCTGCATATCCTATGTG+GGG - chr5_1:5635673-5635692 Msa0713480:intron 50.0%
TATCCTATGTGGGGCCAACA+CGG - chr5_1:5635682-5635701 Msa0713480:intron 50.0%
! CAGCTGTTTGACTTCCGTGT+TGG + chr5_1:5635699-5635718 None:intergenic 50.0%
CAACACGGAAGTCAAACAGC+TGG - chr5_1:5635697-5635716 Msa0713480:intron 50.0%
!! TGTACCGATTTGGAGTCCTC+CGG - chr5_1:5635720-5635739 Msa0713480:intron 50.0%
TAACCCGGAGGACTCCAAAT+CGG + chr5_1:5635727-5635746 None:intergenic 50.0%
CTTTCTGTAGGCTGCCATAG+AGG + chr5_1:5635751-5635770 None:intergenic 50.0%
ATTGGAAGCCATATCCGCCA+GGG - chr5_1:5635776-5635795 Msa0713480:intron 50.0%
! AAGATTACCCCTGGCGGATA+TGG + chr5_1:5635787-5635806 None:intergenic 50.0%
TTCAGGTGCATGTGGATGCA+TGG - chr5_1:5635925-5635944 Msa0713480:intron 50.0%
TCAGGTGCATGTGGATGCAT+GGG - chr5_1:5635926-5635945 Msa0713480:intron 50.0%
! GTTTGAGGTGGAGGCAACAT+TGG + chr5_1:5635957-5635976 None:intergenic 50.0%
GGGATACAGTGAGTTTGAGG+TGG + chr5_1:5635969-5635988 None:intergenic 50.0%
GATGCACAACGCTAAAGCAG+TGG - chr5_1:5636358-5636377 Msa0713480:intron 50.0%
GGTCGACCACATTGTAGGAA+CGG + chr5_1:5636468-5636487 None:intergenic 50.0%
TTCTGCAGCCGCACTATAGT+TGG - chr5_1:5636646-5636665 Msa0713480:intron 50.0%
ATTGATGCAGGCAGAGGAAG+TGG - chr5_1:5636771-5636790 Msa0713480:CDS 50.0%
!! AGTGGTGGACAAGGCTGTAA+AGG - chr5_1:5636789-5636808 Msa0713480:CDS 50.0%
! GAAGGAGGTTTGAGGCCTAT+AGG + chr5_1:5636844-5636863 None:intergenic 50.0%
AGGCCTCAAACCTCCTTCAA+TGG - chr5_1:5636846-5636865 Msa0713480:CDS 50.0%
!! TTACTGTTGATGGTGGTGGG+TGG - chr5_1:5636986-5637005 Msa0713480:intron 50.0%
! TGGTGGACAGACAAACTTGC+TGG - chr5_1:5637006-5637025 Msa0713480:intron 50.0%
!! AACTTGCTGGCAGACATGCA+TGG - chr5_1:5637019-5637038 Msa0713480:intron 50.0%
! ACTTGCTGGCAGACATGCAT+GGG - chr5_1:5637020-5637039 Msa0713480:intron 50.0%
ATGCATGGGCCAATGCCATA+TGG - chr5_1:5637034-5637053 Msa0713480:intron 50.0%
! TGGTTGGTTGGAGCCTAAGA+GGG + chr5_1:5637093-5637112 None:intergenic 50.0%
TAGGCTCCAACCAACCAGAA+TGG - chr5_1:5637096-5637115 Msa0713480:intron 50.0%
TGTTATGGTAGGGACCACAG+GGG + chr5_1:5637154-5637173 None:intergenic 50.0%
GTGTTATGGTAGGGACCACA+GGG + chr5_1:5637155-5637174 None:intergenic 50.0%
CTGTGGTCCCTACCATAACA+CGG - chr5_1:5637154-5637173 Msa0713480:intron 50.0%
ACGGACACCTATGTAGCTTC+TGG - chr5_1:5637173-5637192 Msa0713480:intron 50.0%
CGGACACCTATGTAGCTTCT+GGG - chr5_1:5637174-5637193 Msa0713480:intron 50.0%
GGTAAAGTGCAGCGCGTTGA+AGG + chr5_1:5631493-5631512 None:intergenic 55.0%
GCAACTCAGATGGACGCACT+AGG + chr5_1:5633550-5633569 None:intergenic 55.0%
AGTGCGTCCATCTGAGTTGC+AGG - chr5_1:5633550-5633569 Msa0713480:CDS 55.0%
! TTCAGACAGAGCGCTTGCCT+CGG + chr5_1:5634319-5634338 None:intergenic 55.0%
! GGGGCAAGGTTAGTGGATGA+TGG - chr5_1:5634519-5634538 Msa0713480:CDS 55.0%
GAAAGTGGGGAACATGACGG+TGG - chr5_1:5634579-5634598 Msa0713480:CDS 55.0%
CGGTTCCAAGGGTGAGAATG+GGG - chr5_1:5634701-5634720 Msa0713480:CDS 55.0%
TGAAGCCCCATTCTCACCCT+TGG + chr5_1:5634709-5634728 None:intergenic 55.0%
AAGTTTCTCGGCAACGCTGG+TGG - chr5_1:5634747-5634766 Msa0713480:CDS 55.0%
AGGAAGGAGAAGGGTAGCGA+AGG + chr5_1:5634939-5634958 None:intergenic 55.0%
TGGCCCCACATAGGATATGC+AGG + chr5_1:5635679-5635698 None:intergenic 55.0%
!! GTACCGATTTGGAGTCCTCC+GGG - chr5_1:5635721-5635740 Msa0713480:intron 55.0%
GTCCTCCGGGTTATCCTCTA+TGG - chr5_1:5635734-5635753 Msa0713480:intron 55.0%
TGCCATAGAGGATAACCCGG+AGG + chr5_1:5635739-5635758 None:intergenic 55.0%
GGCTGCCATAGAGGATAACC+CGG + chr5_1:5635742-5635761 None:intergenic 55.0%
CATTGGAAGCCATATCCGCC+AGG - chr5_1:5635775-5635794 Msa0713480:intron 55.0%
TTGGAAGCCATATCCGCCAG+GGG - chr5_1:5635777-5635796 Msa0713480:intron 55.0%
CAGGTGCATGTGGATGCATG+GGG - chr5_1:5635927-5635946 Msa0713480:intron 55.0%
GGTGGACAAGGCTGTAAAGG+AGG - chr5_1:5636792-5636811 Msa0713480:CDS 55.0%
! CTGGTTGGTTGGAGCCTAAG+AGG + chr5_1:5637094-5637113 None:intergenic 55.0%
CGTGTTATGGTAGGGACCAC+AGG + chr5_1:5637156-5637175 None:intergenic 55.0%
! CTTCCGTGTTGGCCCCACAT+AGG + chr5_1:5635688-5635707 None:intergenic 60.0%
GATGCAGGCAGAGGAAGTGG+TGG - chr5_1:5636774-5636793 Msa0713480:CDS 60.0%
!! GGCAGAGGAAGTGGTGGACA+AGG - chr5_1:5636780-5636799 Msa0713480:CDS 60.0%
!! CTGTTGATGGTGGTGGGTGG+TGG - chr5_1:5636989-5637008 Msa0713480:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5631380 5637731 5631380 ID=Msa0713480;Name=Msa0713480
chr5_1 mRNA 5631380 5637731 5631380 ID=Msa0713480-mRNA-1;Parent=Msa0713480;Name=Msa0713480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=308|0.8|0.90|1|0.9|0.81|11|789|525
chr5_1 exon 5631380 5632330 5631380 ID=Msa0713480-mRNA-1:exon:2476;Parent=Msa0713480-mRNA-1
chr5_1 exon 5632717 5632764 5632717 ID=Msa0713480-mRNA-1:exon:2475;Parent=Msa0713480-mRNA-1
chr5_1 exon 5633113 5633181 5633113 ID=Msa0713480-mRNA-1:exon:2474;Parent=Msa0713480-mRNA-1
chr5_1 exon 5633313 5633585 5633313 ID=Msa0713480-mRNA-1:exon:2473;Parent=Msa0713480-mRNA-1
chr5_1 exon 5633700 5633840 5633700 ID=Msa0713480-mRNA-1:exon:2472;Parent=Msa0713480-mRNA-1
chr5_1 exon 5634269 5634805 5634269 ID=Msa0713480-mRNA-1:exon:2471;Parent=Msa0713480-mRNA-1
chr5_1 exon 5634888 5634965 5634888 ID=Msa0713480-mRNA-1:exon:2470;Parent=Msa0713480-mRNA-1
chr5_1 exon 5635540 5635599 5635540 ID=Msa0713480-mRNA-1:exon:2469;Parent=Msa0713480-mRNA-1
chr5_1 exon 5635983 5636062 5635983 ID=Msa0713480-mRNA-1:exon:2468;Parent=Msa0713480-mRNA-1
chr5_1 exon 5636742 5636942 5636742 ID=Msa0713480-mRNA-1:exon:2467;Parent=Msa0713480-mRNA-1
chr5_1 exon 5637495 5637731 5637495 ID=Msa0713480-mRNA-1:exon:2466;Parent=Msa0713480-mRNA-1
chr5_1 five_prime_UTR 5637495 5637731 5637495 ID=Msa0713480-mRNA-1:five_prime_utr;Parent=Msa0713480-mRNA-1
chr5_1 five_prime_UTR 5636872 5636942 5636872 ID=Msa0713480-mRNA-1:five_prime_utr;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5636742 5636871 5636742 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5635983 5636062 5635983 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5635540 5635599 5635540 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5634888 5634965 5634888 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5634269 5634805 5634269 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5633700 5633840 5633700 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5633313 5633585 5633313 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5633113 5633181 5633113 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5632717 5632764 5632717 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 CDS 5632169 5632330 5632169 ID=Msa0713480-mRNA-1:cds;Parent=Msa0713480-mRNA-1
chr5_1 three_prime_UTR 5631380 5632168 5631380 ID=Msa0713480-mRNA-1:three_prime_utr;Parent=Msa0713480-mRNA-1
Gene Sequence

>Msa0713480

ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAAGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAACAAAGCTTGAATCTATGGACTATAATGTTTCTACGTTCTACAATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGTCCCAAATGCTTCCATGTTGCCATAGTGGAGTTAAAATTGCTCTGCCTTGATCATATGATTTATAACCTAGTGCGTCCATCTGAGTTGCAGCTTGGTGCAGTTGAGTTCCTCACTAAACCACTTTCTGAGGACAAGCTGAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTCAATGCCGAGGCAAGCGCTCTGTCTGAATCGCTTAAACCGGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTCCAAACAGACAACGCACTACATGAAAGTACAATATCAATAGATTTAGATAAGGTGTCCAAGTTTAGTGATAATGAACATGAGAATTCGACGGCAAGCGATAAATATCCGGCTCCTTCGACTCCTCAATTAAAACAAGGGGCAAGGTTAGTGGATGATGGTGATTGCCATGAGCAGACTAATTGCTCAATAGAAAAAGAAAGTGGGGAACATGACGGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATTTGAACGCTGAAAGTTCTCCTCAACCTACGAAACCTCTGATTAAGGCGGAAGAAGATTTTGCCAACGGTTCCAAGGGTGAGAATGGGGCTTCATTGAATCCACAGAATAAAAAGTTTCTCGGCAACGCTGGTGGTAATACATCTCCAAATAAAACACGTGCTGTTAACGATCCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACCGCTGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACATCTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGACGGTTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATCATCCACACGGACGAAGATCGAAAATGGCCAAATCGAAGAGATCCTATGCAAAGGAACTATTGTATGCAAAGACCGATTATGGCCTATCCACCATATCATTCTAATCACACCTTTCCTCCAGCTCCTGCATATCCTATGTGGGGCCAACACGGAAGTCAAACAGCTGGTGTACCGATTTGGAGTCCTCCGGGTTATCCTCTATGGCAGCCTACAGAAAGTTGGCATTGGAAGCCATATCCGCCAGGGGTGCATGTGGATGCATGGGGTAACCCAATGTTGCCTCCACCTCAAACTCACTGTATCCCTTACACTCAAAATATGGCTGGGATGCACAACGCTAAAGCAGTGGATTATAGTTATCCGGCAGAGGAAGTGGTGGACAAGGCTGTAAAGGAGGCAATAAACAAGCCATGGCTACCTTTACCTATAGGCCTCAAACCTCCTTCAATGGATAGTGTGTTGGATGAACTTTCTAAACAAGGCATTCCTTTTAGCAAGAAGAGCAAGGGCTCTAGACCATGCTGA
Protein sequence

>Msa0713480

MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRTKLESMDYNVSTFYNENEALSAISSSPKCFHVAIVELKLLCLDHMIYNLVRPSELQLGAVEFLTKPLSEDKLKNIWQHVVHKAFNAEASALSESLKPVKESVESMLQLQTDNALHESTISIDLDKVSKFSDNEHENSTASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDGGECKFVETSCENLNAESSPQPTKPLIKAEEDFANGSKGENGASLNPQNKKFLGNAGGNTSPNKTRAVNDPCENKANRKKMKVDWTAELHKKFVKAVEHLGIDQAIPSRILELMKVDGLTRHNVASHLQKYRMHKRQIIHTDEDRKWPNRRDPMQRNYCMQRPIMAYPPYHSNHTFPPAPAYPMWGQHGSQTAGVPIWSPPGYPLWQPTESWHWKPYPPGVHVDAWGNPMLPPPQTHCIPYTQNMAGMHNAKAVDYSYPAEEVVDKAVKEAINKPWLPLPIGLKPPSMDSVLDELSKQGIPFSKKSKGSRPC*