AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797150 MtrunA17_Chr5g0400241 87.845 543 17 2 1 494 1 543 0.0 961
Msa0797150 MtrunA17_Chr4g0054981 62.409 548 134 9 1 482 1 542 0.0 624
Msa0797150 MtrunA17_Chr2g0324891 32.836 268 127 8 264 483 155 417 3.20e-33 130
Msa0797150 MtrunA17_Chr1g0161431 31.329 316 142 8 8 319 5 249 2.36e-31 127
Msa0797150 MtrunA17_Chr4g0040481 33.080 263 127 7 267 482 155 415 1.02e-29 120
Msa0797150 MtrunA17_Chr4g0074421 41.837 98 57 0 223 320 86 183 2.29e-16 77.8
Msa0797150 MtrunA17_Chr4g0074411 37.209 129 77 2 14 139 18 145 9.56e-16 80.1
Msa0797150 MtrunA17_Chr4g0074411 59.259 54 22 0 266 319 197 250 2.67e-12 69.3
Msa0797150 MtrunA17_Chr4g0074401 37.405 131 78 2 12 139 15 144 9.64e-16 80.1
Msa0797150 MtrunA17_Chr4g0074401 33.523 176 92 9 265 415 198 373 1.44e-13 73.2
Msa0797150 MtrunA17_Chr4g0067981 36.364 132 80 2 9 137 26 156 4.39e-15 78.2
Msa0797150 MtrunA17_Chr4g0067981 66.667 51 17 0 269 319 214 264 2.66e-14 75.5
Msa0797150 MtrunA17_Chr3g0134481 36.306 157 90 5 14 166 8 158 9.08e-15 72.8
Msa0797150 MtrunA17_Chr3g0134481 36.765 68 43 0 252 319 114 181 7.02e-11 61.6
Msa0797150 MtrunA17_Chr3g0123131 36.220 127 75 3 12 134 11 135 1.78e-14 75.9
Msa0797150 MtrunA17_Chr3g0123131 37.500 104 58 2 221 319 147 248 6.73e-11 64.7
Msa0797150 MtrunA17_Chr3g0134461 33.065 124 80 1 14 134 8 131 2.45e-14 71.6
Msa0797150 MtrunA17_Chr3g0134461 52.542 59 28 0 263 321 136 194 3.94e-12 65.5
Msa0797150 MtrunA17_Chr2g0294911 34.211 152 89 4 14 156 29 178 2.85e-14 75.5
Msa0797150 MtrunA17_Chr2g0294911 56.863 51 22 0 269 319 210 260 5.47e-12 68.2
Msa0797150 MtrunA17_Chr7g0255711 62.745 51 19 0 269 319 90 140 8.41e-14 72.0
Msa0797150 MtrunA17_Chr2g0304841 61.111 54 21 0 266 319 209 262 8.54e-14 73.9
Msa0797150 MtrunA17_Chr2g0304841 38.095 126 70 5 14 134 18 140 1.72e-13 73.2
Msa0797150 MtrunA17_Chr3g0137101 37.600 125 72 3 14 134 8 130 1.10e-13 73.6
Msa0797150 MtrunA17_Chr3g0137101 56.140 57 25 0 263 319 191 247 1.22e-13 73.6
Msa0797150 MtrunA17_Chr8g0376881 36.000 125 74 3 14 134 25 147 1.39e-13 73.2
Msa0797150 MtrunA17_Chr8g0376881 60.784 51 20 0 269 319 208 258 3.48e-11 65.5
Msa0797150 MtrunA17_Chr6g0471041 35.385 130 79 3 12 137 12 140 9.24e-13 70.1
Msa0797150 MtrunA17_Chr4g0031961 58.824 51 21 0 269 319 130 180 9.46e-13 68.9
Msa0797150 MtrunA17_Chr1g0149841 59.615 52 21 0 268 319 189 240 1.28e-12 70.1
Msa0797150 MtrunA17_Chr1g0149841 34.677 124 77 2 14 134 5 127 1.11e-11 67.0
Msa0797150 MtrunA17_Chr4g0061021 29.134 127 84 3 10 131 26 151 3.52e-12 68.6
Msa0797150 MtrunA17_Chr3g0127941 29.167 144 93 4 8 143 44 186 5.98e-12 68.2
Msa0797150 MtrunA17_Chr1g0149851 35.200 125 75 3 14 134 5 127 1.85e-11 66.2
Msa0797150 MtrunA17_Chr7g0276361 32.258 124 75 3 15 131 11 132 2.25e-11 66.2
Msa0797150 MtrunA17_Chr3g0091641 29.134 127 84 3 10 131 17 142 2.27e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797150 AT4G18020.3 45.617 559 186 16 1 482 1 518 3.37e-117 355
Msa0797150 AT4G18020.2 45.617 559 186 16 1 482 1 518 3.37e-117 355
Msa0797150 AT4G18020.1 45.617 559 186 16 1 482 1 518 3.37e-117 355
Msa0797150 AT4G18020.6 45.617 559 186 16 1 482 1 518 3.37e-117 355
Msa0797150 AT4G18020.9 45.617 559 186 16 1 482 1 518 3.37e-117 355
Msa0797150 AT4G18020.8 44.980 498 164 15 1 429 1 457 1.03e-110 337
Msa0797150 AT4G18020.11 44.980 498 164 15 1 429 1 457 1.03e-110 337
Msa0797150 AT4G18020.4 44.980 498 164 15 1 429 1 457 1.03e-110 337
Msa0797150 AT4G18020.5 44.980 498 164 15 1 429 1 457 1.03e-110 337
Msa0797150 AT4G18020.10 44.980 498 164 15 1 429 1 457 1.03e-110 337
Msa0797150 AT4G18020.7 44.980 498 164 15 1 429 1 457 1.03e-110 337
Msa0797150 AT5G44190.1 36.111 252 107 9 268 482 145 379 1.73e-19 90.9
Msa0797150 AT2G20570.1 51.111 90 42 1 259 348 142 229 5.14e-19 89.7
Msa0797150 AT5G44190.2 75.000 52 13 0 268 319 145 196 5.12e-18 85.9
Msa0797150 AT2G20570.2 55.128 78 33 1 271 348 170 245 4.89e-17 84.0
Msa0797150 AT5G58080.1 57.895 57 24 0 263 319 187 243 4.52e-15 78.6
Msa0797150 AT5G58080.1 33.333 132 85 2 14 143 14 144 3.43e-12 69.3
Msa0797150 AT3G16857.2 37.097 124 74 2 14 134 33 155 4.92e-15 78.2
Msa0797150 AT3G16857.2 57.377 61 26 0 259 319 226 286 1.38e-14 77.0
Msa0797150 AT3G16857.1 37.097 124 74 2 14 134 33 155 5.06e-15 78.2
Msa0797150 AT3G16857.1 57.377 61 26 0 259 319 226 286 1.40e-14 77.0
Msa0797150 AT2G01760.3 64.815 54 19 0 266 319 131 184 6.14e-15 76.3
Msa0797150 AT3G16857.3 57.377 61 26 0 259 319 156 216 1.01e-14 77.4
Msa0797150 AT2G01760.1 64.815 54 19 0 266 319 196 249 1.39e-14 75.9
Msa0797150 AT2G01760.1 31.200 125 81 2 14 134 7 130 1.13e-11 67.0
Msa0797150 AT2G25180.1 34.328 134 84 2 7 137 6 138 1.48e-14 76.6
Msa0797150 AT2G25180.1 63.462 52 19 0 268 319 193 244 3.65e-13 72.4
Msa0797150 AT2G01760.2 64.815 54 19 0 266 319 224 277 1.99e-14 75.5
Msa0797150 AT3G10760.1 62.745 51 19 0 269 319 104 154 3.18e-14 74.3
Msa0797150 AT5G05090.1 62.745 51 19 0 269 319 80 130 4.13e-14 72.8
Msa0797150 AT4G31920.1 63.462 52 19 0 268 319 181 232 6.84e-14 74.3
Msa0797150 AT4G31920.1 36.885 122 73 2 14 132 13 133 9.82e-14 73.9
Msa0797150 AT5G24470.1 32.576 132 80 4 8 131 38 168 1.52e-13 73.6
Msa0797150 AT2G40970.1 60.784 51 20 0 269 319 104 154 3.95e-13 69.7
Msa0797150 AT5G59570.2 58.824 51 21 0 269 319 140 190 4.34e-13 70.5
Msa0797150 AT5G59570.1 58.824 51 21 0 269 319 140 190 4.34e-13 70.5
Msa0797150 AT3G46640.2 58.824 51 21 0 269 319 143 193 5.92e-13 70.5
Msa0797150 AT3G46640.1 58.824 51 21 0 269 319 143 193 5.92e-13 70.5
Msa0797150 AT3G46640.3 58.824 51 21 0 269 319 143 193 9.43e-13 69.7
Msa0797150 AT1G67710.1 34.127 126 79 2 15 137 8 132 3.68e-12 68.9
Msa0797150 AT5G49240.1 53.846 52 24 0 269 320 222 273 4.48e-12 67.4
Msa0797150 AT5G60100.2 31.405 121 78 3 16 131 62 182 8.51e-12 67.8
Msa0797150 AT5G60100.7 31.405 121 78 3 16 131 62 182 9.43e-12 67.4
Msa0797150 AT5G60100.6 31.405 121 78 3 16 131 62 182 9.43e-12 67.4
Msa0797150 AT5G60100.4 31.405 121 78 3 16 131 62 182 9.43e-12 67.4
Msa0797150 AT5G60100.5 31.405 121 78 3 16 131 62 182 1.05e-11 67.4
Msa0797150 AT5G60100.3 31.405 121 78 3 16 131 62 182 1.05e-11 67.4
Msa0797150 AT5G60100.1 31.405 121 78 3 16 131 62 182 1.05e-11 67.4
Msa0797150 AT5G61380.1 27.612 134 89 4 3 131 7 137 1.46e-11 67.4
Msa0797150 AT5G07210.1 54.902 51 23 0 269 319 229 279 1.86e-11 67.0
Msa0797150 AT5G07210.2 54.902 51 23 0 269 319 221 271 1.89e-11 67.0

Find 206 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGCTCTTCTTGCTAAA+AGG 0.234968 5_3:-9237555 None:intergenic
AGCCATTCCTTCTCGTATAT+TGG 0.261203 5_3:+9235988 Msa0797150:CDS
AAGATTACCCCTGGCGGATA+TGG 0.263394 5_3:-9236436 None:intergenic
AGAAGAACCCTAAGTCCTTT+TGG 0.287836 5_3:-9232932 None:intergenic
AAGAGCTAAAATAATGAAAT+TGG 0.290639 5_3:-9238381 None:intergenic
TCTGCTTTGGTGATTTGATA+TGG 0.291574 5_3:-9238510 None:intergenic
AAGAACAAAGCTTGAATCTA+TGG 0.296938 5_3:+9232988 Msa0797150:CDS
TTGTATGCAAAGACCGATTA+TGG 0.298780 5_3:+9236264 Msa0797150:CDS
TACCTTGGCTGAAAAGAAAA+TGG 0.312284 5_3:-9232268 None:intergenic
AATTTGTATTGGTGAAGTTT+TGG 0.341698 5_3:-9232239 None:intergenic
CTTGAATCTATGGACTATAA+TGG 0.346894 5_3:+9232998 Msa0797150:CDS
TGCTGACTTACTTGAGTGTA+AGG 0.351117 5_3:-9236639 None:intergenic
CTTAATCTAATCTACCATTC+TGG 0.351819 5_3:-9237761 None:intergenic
GCTAAAAGGAATGCATTGTT+TGG 0.352927 5_3:-9237541 None:intergenic
ACACGGACGAAGATCGAAAA+TGG 0.354454 5_3:+9236209 Msa0797150:CDS
TTGTGTTAGTGTTGTTGGAT+AGG 0.357735 5_3:+9238088 Msa0797150:three_prime_UTR
TGCATAGGATCTCTTCGATT+TGG 0.358006 5_3:-9236232 None:intergenic
ACCTACGAAACCTCTGATTA+AGG 0.360688 5_3:+9235311 Msa0797150:CDS
CATGTAGTGCGTTGTCTGTT+TGG 0.369087 5_3:-9235035 None:intergenic
CTTGTTGTTCATGACTCAAA+TGG 0.369721 5_3:+9237594 Msa0797150:three_prime_UTR
GTCCTCCGGGTTATCCTCTA+TGG 0.370689 5_3:+9236386 Msa0797150:CDS
AAACAGCTGGTGTACCGATT+TGG 0.372797 5_3:+9236362 Msa0797150:CDS
CATTATTAGATAACTCTACT+AGG 0.376355 5_3:-9238114 None:intergenic
AAGATTTCCCAAAAGGACTT+AGG 0.377585 5_3:+9232924 Msa0797150:CDS
TTTCCATCCTTGTAAATCAT+TGG 0.382036 5_3:-9232903 None:intergenic
TTGTGTAGAGGACTAGAAAA+AGG 0.382257 5_3:+9232853 Msa0797150:five_prime_UTR
TAATGTGGCAAGCCATCTTC+AGG 0.386166 5_3:+9236042 Msa0797150:CDS
TATCTAATAATGGAAAGTTT+AGG 0.393877 5_3:+9238125 Msa0797150:three_prime_UTR
TATGGCAACATGGAAGCATT+TGG 0.394078 5_3:-9233752 None:intergenic
TGTGTTAGTGTTGTTGGATA+GGG 0.397313 5_3:+9238089 Msa0797150:three_prime_UTR
CAGAATTGTTGTCTCCTTCA+AGG 0.400600 5_3:-9232955 None:intergenic
AACGGTTCCAAGGGTGAGAA+TGG 0.408917 5_3:+9235351 Msa0797150:CDS
CTGTTGATGGTGGTGGGTGG+TGG 0.413625 5_3:+9237640 Msa0797150:three_prime_UTR
GAAGGAGGTTTGAGGCCTAT+AGG 0.414096 5_3:-9237492 None:intergenic
CTACATAGGTGTCCGTGTTA+TGG 0.415999 5_3:-9237817 None:intergenic
CTTAGGGTTCTTCTCCTTGA+AGG 0.421200 5_3:+9232941 Msa0797150:CDS
AGTGCAAACCATAGCTGGTT+TGG 0.423236 5_3:-9232879 None:intergenic
CTAGTAGAGTTATCTAATAA+TGG 0.427589 5_3:+9238115 Msa0797150:three_prime_UTR
AATCTACCATTCTGGTTGGT+TGG 0.427665 5_3:-9237753 None:intergenic
TGATTGATGAGTCCAGTCTT+TGG 0.430716 5_3:+9238193 Msa0797150:three_prime_UTR
AGCTCCTGCATATCCTATGT+GGG 0.434588 5_3:+9236324 Msa0797150:CDS
TAGGTACAAACTTCAATTGA+TGG 0.437412 5_3:-9238059 None:intergenic
AATGGTAGATTAGATTAAGT+TGG 0.437487 5_3:+9237765 Msa0797150:three_prime_UTR
GTTGTGTACTTACTAATAGT+TGG 0.439441 5_3:-9234281 None:intergenic
GCTTAGTATCCGCCAAAGAC+TGG 0.441629 5_3:-9238205 None:intergenic
ATCAGAGGTTTCGTAGGTTG+AGG 0.442825 5_3:-9235306 None:intergenic
ACGGACACCTATGTAGCTTC+TGG 0.444310 5_3:+9237824 Msa0797150:three_prime_UTR
ATGGCAACATGGAAGCATTT+GGG 0.445028 5_3:-9233751 None:intergenic
GACTCTACAGATTCTTTGAC+CGG 0.446068 5_3:-9235000 None:intergenic
ACAATGATGCATGCAACAAA+TGG 0.446090 5_3:+9237857 Msa0797150:three_prime_UTR
ATCAAACTGCAGAATATGGC+TGG 0.446826 5_3:+9236986 Msa0797150:intron
AGATTTCCCAAAAGGACTTA+GGG 0.447765 5_3:+9232925 Msa0797150:CDS
ATGGTAGATTAGATTAAGTT+GGG 0.449486 5_3:+9237766 Msa0797150:three_prime_UTR
CCATGGCTACCTTTACCTAT+AGG 0.454703 5_3:+9237477 Msa0797150:CDS
CGTGTTATGGTAGGGACCAC+AGG 0.454839 5_3:-9237804 None:intergenic
CAACAGTAACTAGCACTGTT+TGG 0.455077 5_3:-9237623 None:intergenic
AGAAATTTGAAACCTCCATC+AGG 0.457896 5_3:-9234239 None:intergenic
CTAGTTACTGTTGATGGTGG+TGG 0.460683 5_3:+9237633 Msa0797150:three_prime_UTR
ACGGTTCCAAGGGTGAGAAT+GGG 0.464644 5_3:+9235352 Msa0797150:CDS
GGTAAAGTGCAGCGCGTTGA+AGG 0.465837 5_3:-9232161 None:intergenic
CGGACACCTATGTAGCTTCT+GGG 0.466833 5_3:+9237825 Msa0797150:three_prime_UTR
TTCAGGTGCATGTGGATGCA+TGG 0.466852 5_3:+9236577 Msa0797150:intron
TGTACCGATTTGGAGTCCTC+CGG 0.467682 5_3:+9236372 Msa0797150:CDS
CAGCTCCTGCATATCCTATG+TGG 0.469307 5_3:+9236323 Msa0797150:CDS
TTTGAGGTGGAGGCAACATT+GGG 0.470593 5_3:-9236605 None:intergenic
CGATTAGCTTTATTCTCACA+TGG 0.470968 5_3:-9235459 None:intergenic
ATGCATGGGCCAATGCCATA+TGG 0.471531 5_3:+9237685 Msa0797150:three_prime_UTR
TTGGCAGTGCAAACCATAGC+TGG 0.472215 5_3:-9232884 None:intergenic
AATGGCCCACGAATTTGTAT+TGG 0.472547 5_3:-9232250 None:intergenic
TAAGGGATACAGTGAGTTTG+AGG 0.473363 5_3:-9236621 None:intergenic
GATTATTACAACAGTCCATA+TGG 0.473847 5_3:-9237700 None:intergenic
ACAAAATAATTACCTGAAGA+TGG 0.478335 5_3:-9236054 None:intergenic
AGGCCTCAAACCTCCTTCAA+TGG 0.480176 5_3:+9237497 Msa0797150:CDS
CATGTGAGAATAAAGCTAAT+CGG 0.480529 5_3:+9235460 Msa0797150:CDS
AAAGTTCATTACCTCCACTA+TGG 0.481628 5_3:-9233770 None:intergenic
AGCAGTGGATTATAGTTATC+CGG 0.482719 5_3:+9237024 Msa0797150:CDS
TCAGGTGCATGTGGATGCAT+GGG 0.484304 5_3:+9236578 Msa0797150:intron
AAATAATGAAATTGGTAATG+AGG 0.484572 5_3:-9238373 None:intergenic
CACATAGGATATGCAGGAGC+TGG 0.488577 5_3:-9236322 None:intergenic
TTCAGCTTGTCCTCAGAAAG+TGG 0.491885 5_3:-9234825 None:intergenic
TATGGTGGATAGGCCATAAT+CGG 0.494071 5_3:-9236277 None:intergenic
TGAAGCCCCATTCTCACCCT+TGG 0.498280 5_3:-9235358 None:intergenic
ATGTTCATTATCACTAAACT+TGG 0.498521 5_3:-9235091 None:intergenic
ATTGATGCAGGCAGAGGAAG+TGG 0.499805 5_3:+9237422 Msa0797150:intron
AGTGGTGGACAAGGCTGTAA+AGG 0.501990 5_3:+9237440 Msa0797150:CDS
AATAATGAAATTGGTAATGA+GGG 0.502570 5_3:-9238372 None:intergenic
GGATGGAAAGATTTCCCAAA+AGG 0.504062 5_3:+9232917 Msa0797150:CDS
AATTGAGGAGTCGAAGGAGC+CGG 0.504982 5_3:-9235141 None:intergenic
GTTTGAGGTGGAGGCAACAT+TGG 0.505444 5_3:-9236606 None:intergenic
TTCAGACAGAGCGCTTGCCT+CGG 0.507470 5_3:-9234968 None:intergenic
GGTTTGAGGCCTATAGGTAA+AGG 0.507845 5_3:-9237486 None:intergenic
CTGGTTGGTTGGAGCCTAAG+AGG 0.509344 5_3:-9237742 None:intergenic
CAGCTGTTTGACTTCCGTGT+TGG 0.509674 5_3:-9236348 None:intergenic
TAGTTACTGTTGATGGTGGT+GGG 0.510112 5_3:+9237634 Msa0797150:three_prime_UTR
TCTGTCTGAATCGCTTAAAC+CGG 0.513162 5_3:+9234981 Msa0797150:CDS
GAAAGTATGAAGAGAGAGAG+AGG 0.513856 5_3:-9232182 None:intergenic
GTGAAGGCAGTGGAACATCT+AGG 0.515004 5_3:+9235956 Msa0797150:CDS
TACAACAGTCCATATGGCAT+TGG 0.515441 5_3:-9237694 None:intergenic
CTCCAATATACGAGAAGGAA+TGG 0.515998 5_3:-9235990 None:intergenic
TATCCATTGAAGGAGGTTTG+AGG 0.516912 5_3:-9237500 None:intergenic
CATTGGAAGCCATATCCGCC+AGG 0.517092 5_3:+9236427 Msa0797150:CDS
GGAAAGTTTAGGTAGGAAGT+AGG 0.518233 5_3:+9238136 Msa0797150:three_prime_UTR
ATGCTTCCATGTTGCCATAG+TGG 0.519336 5_3:+9233756 Msa0797150:CDS
GACGGCAAGCGATAAATATC+CGG 0.521710 5_3:+9235122 Msa0797150:CDS
ACAGTGCTAGTTACTGTTGA+TGG 0.522075 5_3:+9237627 Msa0797150:three_prime_UTR
AGCATGTAGTAACAATTATG+AGG 0.522586 5_3:+9238426 Msa0797150:three_prime_UTR
TCATTTCCCAGAAGCTACAT+AGG 0.528420 5_3:-9237831 None:intergenic
AAAGGATGCCAAACCAGCTA+TGG 0.530919 5_3:+9232871 Msa0797150:exon
ATACAGTGAGTTTGAGGTGG+AGG 0.531317 5_3:-9236615 None:intergenic
TGCACTGCCAATGATTTACA+AGG 0.534699 5_3:+9232896 Msa0797150:CDS
TGGTGGACAGACAAACTTGC+TGG 0.535931 5_3:+9237657 Msa0797150:three_prime_UTR
GTGAGTATAAGCTGCCCTGA+TGG 0.537521 5_3:+9234224 Msa0797150:CDS
ATCTAATCTACCATTCTGGT+TGG 0.537652 5_3:-9237757 None:intergenic
CTTTCTGTAGGCTGCCATAG+AGG 0.540911 5_3:-9236400 None:intergenic
TAACCCGGAGGACTCCAAAT+CGG 0.541856 5_3:-9236376 None:intergenic
TATGGCAGCCTACAGAAAGT+TGG 0.542411 5_3:+9236404 Msa0797150:CDS
CTTCCGTGTTGGCCCCACAT+AGG 0.543505 5_3:-9236337 None:intergenic
CTCAATTAAAACAAGGGGCA+AGG 0.543629 5_3:+9235157 Msa0797150:CDS
ATTCTCACCCTTGGAACCGT+TGG 0.545261 5_3:-9235349 None:intergenic
TGGCCCCACATAGGATATGC+AGG 0.545338 5_3:-9236328 None:intergenic
CAGTAACTAGCACTGTTTGG+TGG 0.546715 5_3:-9237620 None:intergenic
TCCAACACACTATCCATTGA+AGG 0.547337 5_3:-9237510 None:intergenic
GTACCGATTTGGAGTCCTCC+GGG 0.547442 5_3:+9236373 Msa0797150:CDS
GGCAGAGGAAGTGGTGGACA+AGG 0.548339 5_3:+9237431 Msa0797150:intron
AAGGTGTGATTAGAATGATA+TGG 0.548662 5_3:-9236295 None:intergenic
TTGTTGTTCATGACTCAAAT+GGG 0.550319 5_3:+9237595 Msa0797150:three_prime_UTR
GCCTTAATCAGAGGTTTCGT+AGG 0.552358 5_3:-9235312 None:intergenic
TTGATGAGTCCAGTCTTTGG+CGG 0.552528 5_3:+9238196 Msa0797150:three_prime_UTR
TTCCAATGCCAACTTTCTGT+AGG 0.557441 5_3:-9236412 None:intergenic
ACTTGCTGGCAGACATGCAT+GGG 0.557989 5_3:+9237671 Msa0797150:three_prime_UTR
GCAGAAGAACAAGAACAGAT+TGG 0.561014 5_3:+9232815 Msa0797150:intron
ATGACATACATGGATGATGA+TGG 0.561202 5_3:+9237882 Msa0797150:three_prime_UTR
AGTAACTAGCACTGTTTGGT+GGG 0.568901 5_3:-9237619 None:intergenic
TGTTAGTGTTGTTGGATAGG+GGG 0.569821 5_3:+9238091 Msa0797150:three_prime_UTR
GTGTTAGTGTTGTTGGATAG+GGG 0.569879 5_3:+9238090 Msa0797150:three_prime_UTR
ATACAATAGTTCCTTTGCAT+AGG 0.572699 5_3:-9236247 None:intergenic
GGGATACAGTGAGTTTGAGG+TGG 0.573814 5_3:-9236618 None:intergenic
ATAGGTGTCCGTGTTATGGT+AGG 0.575875 5_3:-9237813 None:intergenic
TCTTCTTCCGCCTTAATCAG+AGG 0.577092 5_3:-9235321 None:intergenic
TCCTTCAATGGATAGTGTGT+TGG 0.579357 5_3:+9237509 Msa0797150:CDS
CAAATTTCTCGAGAATGCGA+AGG 0.579566 5_3:+9234253 Msa0797150:CDS
AATATCAATAGATTTAGATA+AGG 0.579803 5_3:+9235065 Msa0797150:CDS
AGCCTACAGAAAGTTGGCAT+TGG 0.580116 5_3:+9236410 Msa0797150:CDS
GCTGACTTACTTGAGTGTAA+GGG 0.580632 5_3:-9236638 None:intergenic
TAATAATGGAAAGTTTAGGT+AGG 0.582334 5_3:+9238129 Msa0797150:three_prime_UTR
ACAAATGGACATGACATACA+TGG 0.582970 5_3:+9237872 Msa0797150:three_prime_UTR
GTCTGTTTGGAGCTGCAACA+TGG 0.584513 5_3:-9235022 None:intergenic
TAGGCTCCAACCAACCAGAA+TGG 0.584546 5_3:+9237747 Msa0797150:three_prime_UTR
ACTTCACCAATACAAATTCG+TGG 0.586725 5_3:+9232244 Msa0797150:five_prime_UTR
CTGCCAATGATTTACAAGGA+TGG 0.587055 5_3:+9232900 Msa0797150:CDS
TCGACTCCTCAATTAAAACA+AGG 0.587700 5_3:+9235150 Msa0797150:CDS
ATTAACTCCAATATACGAGA+AGG 0.590177 5_3:-9235995 None:intergenic
GTAAAGTGCAGCGCGTTGAA+GGG 0.590995 5_3:-9232160 None:intergenic
TGGTTGGTTGGAGCCTAAGA+GGG 0.591259 5_3:-9237741 None:intergenic
TTGGCAGCATGTTGTTCACA+AGG 0.591380 5_3:+9234854 Msa0797150:CDS
TCAAACTGCAGAATATGGCT+GGG 0.595527 5_3:+9236987 Msa0797150:intron
TGATCTGCTTACTTGTGTAG+AGG 0.596929 5_3:+9232841 Msa0797150:five_prime_UTR
CGGTTTGACAAGGCATAATG+TGG 0.597828 5_3:+9236027 Msa0797150:CDS
CCTATAGGTAAAGGTAGCCA+TGG 0.598962 5_3:-9237477 None:intergenic
CGGTTCCAAGGGTGAGAATG+GGG 0.600958 5_3:+9235353 Msa0797150:CDS
ACTACTTGAGATTGCTGACA+AGG 0.601057 5_3:-9233728 None:intergenic
AACTTGCTGGCAGACATGCA+TGG 0.602656 5_3:+9237670 Msa0797150:three_prime_UTR
TTGGAGTTAATGAAAGTCGA+CGG 0.603528 5_3:+9236007 Msa0797150:CDS
AGGAGGCAATAAACAAGCCA+TGG 0.604570 5_3:+9237460 Msa0797150:CDS
AAGTTTCTCGGCAACGCTGG+TGG 0.606145 5_3:+9235399 Msa0797150:CDS
AGTATAAGCTGCCCTGATGG+AGG 0.607969 5_3:+9234227 Msa0797150:CDS
ATTAGAATGATATGGTGGAT+AGG 0.608161 5_3:-9236287 None:intergenic
ATCGAAGAGATCCTATGCAA+AGG 0.609454 5_3:+9236236 Msa0797150:CDS
ATATGCAGGAGCTGGAGGAA+AGG 0.610602 5_3:-9236314 None:intergenic
TAGGTGTCCGTGTTATGGTA+GGG 0.610785 5_3:-9237812 None:intergenic
CCTCACTAAACCACTTTCTG+AGG 0.611321 5_3:+9234815 Msa0797150:CDS
TTACTGTTGATGGTGGTGGG+TGG 0.614628 5_3:+9237637 Msa0797150:three_prime_UTR
CGACTCCTCAATTAAAACAA+GGG 0.616068 5_3:+9235151 Msa0797150:CDS
GTGTTATGGTAGGGACCACA+GGG 0.616784 5_3:-9237803 None:intergenic
ATTGGAAGCCATATCCGCCA+GGG 0.619064 5_3:+9236428 Msa0797150:CDS
GCTCCTGCATATCCTATGTG+GGG 0.621371 5_3:+9236325 Msa0797150:CDS
GGCTGCCATAGAGGATAACC+CGG 0.621410 5_3:-9236391 None:intergenic
CCTCAGAAAGTGGTTTAGTG+AGG 0.621536 5_3:-9234815 None:intergenic
CAACACGGAAGTCAAACAGC+TGG 0.623780 5_3:+9236349 Msa0797150:CDS
GGTGGACAAGGCTGTAAAGG+AGG 0.624645 5_3:+9237443 Msa0797150:CDS
CACAATGATGAAGTGCATTG+CGG 0.626806 5_3:+9234558 Msa0797150:CDS
ATAGGATATGCAGGAGCTGG+AGG 0.633192 5_3:-9236319 None:intergenic
TGAAAGTCGACGGTTTGACA+AGG 0.634861 5_3:+9236017 Msa0797150:CDS
TATCCTATGTGGGGCCAACA+CGG 0.635664 5_3:+9236334 Msa0797150:CDS
CTTCACCAATACAAATTCGT+GGG 0.636999 5_3:+9232245 Msa0797150:five_prime_UTR
GAAATTTGAAACCTCCATCA+GGG 0.638403 5_3:-9234238 None:intergenic
GCTTCAATTCAACAAATGTG+TGG 0.639298 5_3:-9237969 None:intergenic
CAATCAGGCATTCAATGCCG+AGG 0.641798 5_3:+9234951 Msa0797150:intron
TCATGAACAACAAGTCAGCA+TGG 0.646375 5_3:-9237585 None:intergenic
GATGCACAACGCTAAAGCAG+TGG 0.647084 5_3:+9237009 Msa0797150:CDS
GACTCCTCAATTAAAACAAG+GGG 0.647576 5_3:+9235152 Msa0797150:CDS
AACACACTATCCATTGAAGG+AGG 0.656403 5_3:-9237507 None:intergenic
AGACAAATCGAAGAAAACAA+AGG 0.658823 5_3:-9238453 None:intergenic
TAATGAACATGAGAATTCGA+CGG 0.659183 5_3:+9235104 Msa0797150:CDS
GTGTGATTAGAATGATATGG+TGG 0.660247 5_3:-9236292 None:intergenic
CTGTGGTCCCTACCATAACA+CGG 0.660405 5_3:+9237805 Msa0797150:three_prime_UTR
GATGCAGGCAGAGGAAGTGG+TGG 0.661975 5_3:+9237425 Msa0797150:intron
CTTCCATGTTGCCATAGTGG+AGG 0.668416 5_3:+9233759 Msa0797150:CDS
TTACCTCCACTATGGCAACA+TGG 0.672571 5_3:-9233762 None:intergenic
TACGAAACCTCTGATTAAGG+CGG 0.686443 5_3:+9235314 Msa0797150:CDS
CAGGTGCATGTGGATGCATG+GGG 0.691891 5_3:+9236579 Msa0797150:intron
CAAGAGACAGATCATCCACA+CGG 0.695941 5_3:+9236192 Msa0797150:intron
TTGGAAGCCATATCCGCCAG+GGG 0.704021 5_3:+9236429 Msa0797150:CDS
GTGCTAGTTACTGTTGATGG+TGG 0.719464 5_3:+9237630 Msa0797150:three_prime_UTR
TGCCATAGAGGATAACCCGG+AGG 0.746099 5_3:-9236388 None:intergenic
TGTTATGGTAGGGACCACAG+GGG 0.833590 5_3:-9237802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGATAAAATTAAACTA+AGG - chr5_3:9233584-9233603 None:intergenic 10.0%
!!! TTTTCTAATTCAATATTTTA+TGG + chr5_3:9234664-9234683 Msa0797150:intron 10.0%
!! AAATAAAAATGACATATATA+TGG + chr5_3:9236116-9236135 Msa0797150:intron 10.0%
!! AATATCTAATCAAAATTATT+TGG - chr5_3:9236963-9236982 None:intergenic 10.0%
!! ATAAAAAACTGTACTTTAAT+TGG - chr5_3:9232574-9232593 None:intergenic 15.0%
!! AAAAATTAACTTTATTCACA+TGG - chr5_3:9232672-9232691 None:intergenic 15.0%
!! TGTTTAAAAAAAATGAAAAG+TGG + chr5_3:9233367-9233386 Msa0797150:intron 15.0%
!!! GTTTAATTTTATCTTTATTG+TGG + chr5_3:9233586-9233605 Msa0797150:intron 15.0%
!! AAGCAAAAAATAAACTAAAA+AGG + chr5_3:9233847-9233866 Msa0797150:intron 15.0%
!! ATTTACTATGAACATTATAT+AGG + chr5_3:9234897-9234916 Msa0797150:intron 15.0%
!! AATATCAATAGATTTAGATA+AGG + chr5_3:9235065-9235084 Msa0797150:CDS 15.0%
!!! TAGAACATCATATATTTTTT+TGG + chr5_3:9235837-9235856 Msa0797150:intron 15.0%
!!! TTAATTAATTTGTGATCTCA+TGG + chr5_3:9232787-9232806 Msa0797150:intron 20.0%
!! TTATTCTATTTATGTGCATT+TGG + chr5_3:9233458-9233477 Msa0797150:intron 20.0%
!! AGATAAAATTAAACTAAGGT+TGG - chr5_3:9233580-9233599 None:intergenic 20.0%
!! TAATTAAAATGATGTGAGTA+TGG + chr5_3:9233886-9233905 Msa0797150:intron 20.0%
!! AGTATATATCTTATATTGTC+GGG - chr5_3:9234122-9234141 None:intergenic 20.0%
!! CAGTATATATCTTATATTGT+CGG - chr5_3:9234123-9234142 None:intergenic 20.0%
!! AAAATATATGATGTTCTAAC+CGG - chr5_3:9235835-9235854 None:intergenic 20.0%
!!! TATGAAATAACTGATTTTTC+AGG + chr5_3:9236560-9236579 Msa0797150:intron 20.0%
!! AAAATGACTTGAATTTAAAC+AGG + chr5_3:9236892-9236911 Msa0797150:intron 20.0%
!! AAATGACTTGAATTTAAACA+GGG + chr5_3:9236893-9236912 Msa0797150:intron 20.0%
!!! TATACTATTAATCAAGTTGA+AGG - chr5_3:9237075-9237094 None:intergenic 20.0%
!! AGTAACAATTGTAACATTAA+CGG + chr5_3:9237172-9237191 Msa0797150:intron 20.0%
!!! TATCTAATAATGGAAAGTTT+AGG + chr5_3:9238125-9238144 Msa0797150:three_prime_UTR 20.0%
!!! AATAATGAAATTGGTAATGA+GGG - chr5_3:9238375-9238394 None:intergenic 20.0%
!!! AAATAATGAAATTGGTAATG+AGG - chr5_3:9238376-9238395 None:intergenic 20.0%
!! AAGAGCTAAAATAATGAAAT+TGG - chr5_3:9238384-9238403 None:intergenic 20.0%
!!! TTTTTTTCTGCATATGTTTG+TGG + chr5_3:9232085-9232104 Msa0797150:five_prime_UTR 25.0%
!!! AATTTGTATTGGTGAAGTTT+TGG - chr5_3:9232242-9232261 None:intergenic 25.0%
! TGTATGTTGAAATAATACCT+TGG - chr5_3:9232286-9232305 None:intergenic 25.0%
! ATGTCATTCTATTGAAAAGA+GGG - chr5_3:9233097-9233116 None:intergenic 25.0%
! TCAATAGTCCTTATGTTATA+TGG + chr5_3:9233137-9233156 Msa0797150:intron 25.0%
! TAAGATCAAGCATCAAAAAA+AGG - chr5_3:9233266-9233285 None:intergenic 25.0%
!! TAAAAAGGATTTTGTCTAGT+AGG + chr5_3:9233862-9233881 Msa0797150:intron 25.0%
! CATTACAATATACTACAACT+TGG - chr5_3:9234092-9234111 None:intergenic 25.0%
! GGTTATAAATCATATGATCA+AGG - chr5_3:9234181-9234200 None:intergenic 25.0%
! ATATAAGTGACGGTTAAAAT+TGG - chr5_3:9234418-9234437 None:intergenic 25.0%
! CTAATACTGAATATAAGTGA+CGG - chr5_3:9234428-9234447 None:intergenic 25.0%
! ATGAAAAATTGCAAGTATCA+TGG - chr5_3:9234509-9234528 None:intergenic 25.0%
!!! CATTTTTTCTGTTTATAGCT+TGG + chr5_3:9234780-9234799 Msa0797150:intron 25.0%
! ATGTTCATTATCACTAAACT+TGG - chr5_3:9235094-9235113 None:intergenic 25.0%
!!! TTTCCAAAGTTTTGTATAAC+CGG + chr5_3:9235689-9235708 Msa0797150:intron 25.0%
! AAATATATGATGTTCTAACC+GGG - chr5_3:9235834-9235853 None:intergenic 25.0%
! ATATGTATCTATCACTATTC+TGG + chr5_3:9236086-9236105 Msa0797150:intron 25.0%
!!! ATTTTTTCCGTTCATATGTA+TGG + chr5_3:9236486-9236505 Msa0797150:intron 25.0%
!! CTTTGCTAGTTATTTAAGAT+AGG + chr5_3:9236743-9236762 Msa0797150:intron 25.0%
!! GTCTTACATATGATGTTTTT+CGG - chr5_3:9236927-9236946 None:intergenic 25.0%
! TGATTAATAGTATAGCTCAA+TGG + chr5_3:9237081-9237100 Msa0797150:intron 25.0%
! AATTGTAACATTAACGGTTT+AGG + chr5_3:9237178-9237197 Msa0797150:intron 25.0%
! CCTTTCTATTATTCAAACTT+AGG - chr5_3:9237277-9237296 None:intergenic 25.0%
! CCTAAGTTTGAATAATAGAA+AGG + chr5_3:9237274-9237293 Msa0797150:intron 25.0%
!!! GTATTTGTTATCTTTTGAAC+CGG + chr5_3:9237362-9237381 Msa0797150:intron 25.0%
! ATTCTTGTTCTAACGATATT+TGG + chr5_3:9237385-9237404 Msa0797150:intron 25.0%
! AATGGTAGATTAGATTAAGT+TGG + chr5_3:9237765-9237784 Msa0797150:three_prime_UTR 25.0%
! ATGGTAGATTAGATTAAGTT+GGG + chr5_3:9237766-9237785 Msa0797150:three_prime_UTR 25.0%
!!! ATTTTTTTGGTTTTAGCAAG+TGG - chr5_3:9237921-9237940 None:intergenic 25.0%
!! AAAAATTGGTAGCTAAAAAC+TGG + chr5_3:9237946-9237965 Msa0797150:three_prime_UTR 25.0%
! GTTCAGATACAAAAAATTGA+TGG + chr5_3:9238027-9238046 Msa0797150:three_prime_UTR 25.0%
! AACACTAACACAAAAAAGAT+AGG - chr5_3:9238081-9238100 None:intergenic 25.0%
! CATTATTAGATAACTCTACT+AGG - chr5_3:9238117-9238136 None:intergenic 25.0%
! CTAGTAGAGTTATCTAATAA+TGG + chr5_3:9238115-9238134 Msa0797150:three_prime_UTR 25.0%
!! TAATAATGGAAAGTTTAGGT+AGG + chr5_3:9238129-9238148 Msa0797150:three_prime_UTR 25.0%
! GTTCATTCTCTCTTTCTTTT+TGG + chr5_3:9232346-9232365 Msa0797150:intron 30.0%
TTTCCATCCTTGTAAATCAT+TGG - chr5_3:9232906-9232925 None:intergenic 30.0%
AAGAACAAAGCTTGAATCTA+TGG + chr5_3:9232988-9233007 Msa0797150:CDS 30.0%
! CTTGAATCTATGGACTATAA+TGG + chr5_3:9232998-9233017 Msa0797150:CDS 30.0%
! TTGATCCCATATTTTTCGTT+TGG + chr5_3:9233030-9233049 Msa0797150:intron 30.0%
TGTCATTCTATTGAAAAGAG+GGG - chr5_3:9233096-9233115 None:intergenic 30.0%
GATGTCATTCTATTGAAAAG+AGG - chr5_3:9233098-9233117 None:intergenic 30.0%
TAGAATGACATCTTGTAAAG+TGG + chr5_3:9233106-9233125 Msa0797150:intron 30.0%
AAAAGTGGTCCAAATTCTAA+AGG + chr5_3:9233382-9233401 Msa0797150:intron 30.0%
! TCCAAATTCTAAAGGTAATG+TGG + chr5_3:9233390-9233409 Msa0797150:intron 30.0%
!! TCCACATTACCTTTAGAATT+TGG - chr5_3:9233394-9233413 None:intergenic 30.0%
ATATTCGCATGGAAACTAAA+AGG - chr5_3:9233494-9233513 None:intergenic 30.0%
AGAAACTGTATAGAAAAGTG+AGG - chr5_3:9233686-9233705 None:intergenic 30.0%
!! ATGATTTTCTGTCATTTCTG+CGG - chr5_3:9233802-9233821 None:intergenic 30.0%
CTAAAAGATACTTTCTGCAA+AGG + chr5_3:9233960-9233979 Msa0797150:intron 30.0%
! TTTTCATCTTATGCGTTACT+CGG + chr5_3:9234035-9234054 Msa0797150:intron 30.0%
GTTGTGTACTTACTAATAGT+TGG - chr5_3:9234284-9234303 None:intergenic 30.0%
TATATGAGAGCAGACAAATT+AGG - chr5_3:9234311-9234330 None:intergenic 30.0%
!! AACTTCTAGGAAGTACATTT+TGG - chr5_3:9234368-9234387 None:intergenic 30.0%
CGGTTAAAATTGGATTTGAA+AGG - chr5_3:9234408-9234427 None:intergenic 30.0%
AGGACAAGCTGAAAAATATT+TGG + chr5_3:9234835-9234854 Msa0797150:CDS 30.0%
GTTGTTGAATTCAATCAATC+AGG + chr5_3:9234936-9234955 Msa0797150:intron 30.0%
TAATGAACATGAGAATTCGA+CGG + chr5_3:9235104-9235123 Msa0797150:CDS 30.0%
TGCTCAATAGAAAAAGAAAG+TGG + chr5_3:9235216-9235235 Msa0797150:intron 30.0%
GCTCAATAGAAAAAGAAAGT+GGG + chr5_3:9235217-9235236 Msa0797150:intron 30.0%
CTCAATAGAAAAAGAAAGTG+GGG + chr5_3:9235218-9235237 Msa0797150:intron 30.0%
CCACAGAATAAAAAGTTTCT+CGG + chr5_3:9235387-9235406 Msa0797150:CDS 30.0%
!! TTAACAGCACGTGTTTTATT+TGG - chr5_3:9235435-9235454 None:intergenic 30.0%
CATGTGAGAATAAAGCTAAT+CGG + chr5_3:9235460-9235479 Msa0797150:CDS 30.0%
!! AAGTTGATATCTATAGCACT+AGG + chr5_3:9235645-9235664 Msa0797150:intron 30.0%
!!! TTGCATATCCTTATTTTTCC+CGG + chr5_3:9235813-9235832 Msa0797150:intron 30.0%
TGATTATCTGATTACACTTC+TGG + chr5_3:9235882-9235901 Msa0797150:intron 30.0%
ATTAACTCCAATATACGAGA+AGG - chr5_3:9235998-9236017 None:intergenic 30.0%
ATACAATAGTTCCTTTGCAT+AGG - chr5_3:9236250-9236269 None:intergenic 30.0%
!! ATTAGAATGATATGGTGGAT+AGG - chr5_3:9236290-9236309 None:intergenic 30.0%
AAGGTGTGATTAGAATGATA+TGG - chr5_3:9236298-9236317 None:intergenic 30.0%
! TTTTTATCCGAAATCAAAGC+AGG + chr5_3:9236457-9236476 Msa0797150:intron 30.0%
! TGTATATCCTGCTTTGATTT+CGG - chr5_3:9236467-9236486 None:intergenic 30.0%
AAACAAGCCATACATATGAA+CGG - chr5_3:9236496-9236515 None:intergenic 30.0%
AAGTCAGCAAATTGAATACT+TGG + chr5_3:9236653-9236672 Msa0797150:intron 30.0%
CACATGCTTGAATTAACTAT+TGG - chr5_3:9236711-9236730 None:intergenic 30.0%
TCGAACACAGACATTAAAAA+TGG - chr5_3:9236841-9236860 None:intergenic 30.0%
TTTCATCAAACTGCAGAATA+TGG + chr5_3:9236982-9237001 Msa0797150:intron 30.0%
! CAAGTTGAAGGAAACATAAA+GGG - chr5_3:9237063-9237082 None:intergenic 30.0%
!! TCAAGTTGAAGGAAACATAA+AGG - chr5_3:9237064-9237083 None:intergenic 30.0%
CAGTATTACACACCAATTAA+GGG - chr5_3:9237140-9237159 None:intergenic 30.0%
ACAGTATTACACACCAATTA+AGG - chr5_3:9237141-9237160 None:intergenic 30.0%
ATATCGTTAGAACAAGAATC+CGG - chr5_3:9237384-9237403 None:intergenic 30.0%
TGTGTTATATTCATTGATGC+AGG + chr5_3:9237410-9237429 Msa0797150:intron 30.0%
! TTGTTGTTCATGACTCAAAT+GGG + chr5_3:9237595-9237614 Msa0797150:three_prime_UTR 30.0%
GATTATTACAACAGTCCATA+TGG - chr5_3:9237703-9237722 None:intergenic 30.0%
CTTAATCTAATCTACCATTC+TGG - chr5_3:9237764-9237783 None:intergenic 30.0%
TAGGTACAAACTTCAATTGA+TGG - chr5_3:9238062-9238081 None:intergenic 30.0%
!!! CTTTTTTGTGTTAGTGTTGT+TGG + chr5_3:9238083-9238102 Msa0797150:three_prime_UTR 30.0%
! TTTTGTAGCTTTTGTCCAAA+CGG - chr5_3:9238267-9238286 None:intergenic 30.0%
AGCATGTAGTAACAATTATG+AGG + chr5_3:9238426-9238445 Msa0797150:three_prime_UTR 30.0%
AGACAAATCGAAGAAAACAA+AGG - chr5_3:9238456-9238475 None:intergenic 30.0%
ACTTCACCAATACAAATTCG+TGG + chr5_3:9232244-9232263 Msa0797150:five_prime_UTR 35.0%
CTTCACCAATACAAATTCGT+GGG + chr5_3:9232245-9232264 Msa0797150:five_prime_UTR 35.0%
TACCTTGGCTGAAAAGAAAA+TGG - chr5_3:9232271-9232290 None:intergenic 35.0%
!! TTGTCTTGTTGTGGTGTTAT+TGG + chr5_3:9232447-9232466 Msa0797150:intron 35.0%
TTTCTCCACAAGATCTTAAC+TGG + chr5_3:9232473-9232492 Msa0797150:intron 35.0%
TTCTCCACAAGATCTTAACT+GGG + chr5_3:9232474-9232493 Msa0797150:intron 35.0%
AAAACCCAGTTAAGATCTTG+TGG - chr5_3:9232481-9232500 None:intergenic 35.0%
TTGTGTAGAGGACTAGAAAA+AGG + chr5_3:9232853-9232872 Msa0797150:five_prime_UTR 35.0%
AAGATTTCCCAAAAGGACTT+AGG + chr5_3:9232924-9232943 Msa0797150:CDS 35.0%
AGATTTCCCAAAAGGACTTA+GGG + chr5_3:9232925-9232944 Msa0797150:CDS 35.0%
GCAAGCCAAACGAAAAATAT+GGG - chr5_3:9233038-9233057 None:intergenic 35.0%
ACCATCTTTACTAAGGAAAG+TGG - chr5_3:9233073-9233092 None:intergenic 35.0%
CCAGAGAACCATATAACATA+AGG - chr5_3:9233148-9233167 None:intergenic 35.0%
CCTTATGTTATATGGTTCTC+TGG + chr5_3:9233145-9233164 Msa0797150:intron 35.0%
! TATGGTTCTCTGGAAATTTG+TGG + chr5_3:9233155-9233174 Msa0797150:intron 35.0%
TTGATCTTAGCATATGTGTG+TGG + chr5_3:9233277-9233296 Msa0797150:intron 35.0%
! TCAGTTTTCCACGATAAAGT+CGG - chr5_3:9233436-9233455 None:intergenic 35.0%
CCAACTAATACATATTCGCA+TGG - chr5_3:9233505-9233524 None:intergenic 35.0%
CCATGCGAATATGTATTAGT+TGG + chr5_3:9233502-9233521 Msa0797150:intron 35.0%
AAAGTTCATTACCTCCACTA+TGG - chr5_3:9233773-9233792 None:intergenic 35.0%
GACTTCACTCACTTAATACT+AGG - chr5_3:9234013-9234032 None:intergenic 35.0%
! GAAATTTGAAACCTCCATCA+GGG - chr5_3:9234241-9234260 None:intergenic 35.0%
! AGAAATTTGAAACCTCCATC+AGG - chr5_3:9234242-9234261 None:intergenic 35.0%
ATAAAGATCCATCCATGTTG+AGG + chr5_3:9234328-9234347 Msa0797150:intron 35.0%
TAAAGATCCATCCATGTTGA+GGG + chr5_3:9234329-9234348 Msa0797150:intron 35.0%
ACTTCCTAGAAGTTGAAAGA+AGG + chr5_3:9234374-9234393 Msa0797150:intron 35.0%
TTTGCCTTCTTTCAACTTCT+AGG - chr5_3:9234381-9234400 None:intergenic 35.0%
ATATTGAGCTACACATCACT+AGG - chr5_3:9234604-9234623 None:intergenic 35.0%
!!! TGTTTTAATTGAGGAGTCGA+AGG - chr5_3:9235150-9235169 None:intergenic 35.0%
TCGACTCCTCAATTAAAACA+AGG + chr5_3:9235150-9235169 Msa0797150:CDS 35.0%
CGACTCCTCAATTAAAACAA+GGG + chr5_3:9235151-9235170 Msa0797150:CDS 35.0%
GACTCCTCAATTAAAACAAG+GGG + chr5_3:9235152-9235171 Msa0797150:CDS 35.0%
! CCGAGAAACTTTTTATTCTG+TGG - chr5_3:9235390-9235409 None:intergenic 35.0%
!! CGATTAGCTTTATTCTCACA+TGG - chr5_3:9235462-9235481 None:intergenic 35.0%
ATCGGAAGAAGATGAAAGTA+AGG + chr5_3:9235478-9235497 Msa0797150:intron 35.0%
AATGGTACAGAGAAAGAAGA+AGG - chr5_3:9235607-9235626 None:intergenic 35.0%
TGATATCTATAGCACTAGGA+TGG + chr5_3:9235649-9235668 Msa0797150:intron 35.0%
TGACCGGTTATACAAAACTT+TGG - chr5_3:9235695-9235714 None:intergenic 35.0%
ATCATGTTGGGAATATTGAC+CGG - chr5_3:9235711-9235730 None:intergenic 35.0%
TGTTCTAACCGGGAAAAATA+AGG - chr5_3:9235824-9235843 None:intergenic 35.0%
!!! AAATTTTTTGTGCAGCTCAG+CGG - chr5_3:9235936-9235955 None:intergenic 35.0%
GCTGCACAAAAAATTTGTGA+AGG + chr5_3:9235940-9235959 Msa0797150:CDS 35.0%
CAAAAAATTTGTGAAGGCAG+TGG + chr5_3:9235946-9235965 Msa0797150:CDS 35.0%
TTGGAGTTAATGAAAGTCGA+CGG + chr5_3:9236007-9236026 Msa0797150:CDS 35.0%
TTGTATGCAAAGACCGATTA+TGG + chr5_3:9236264-9236283 Msa0797150:CDS 35.0%
GTGTGATTAGAATGATATGG+TGG - chr5_3:9236295-9236314 None:intergenic 35.0%
ATCCATGATTTCTACATCAC+AGG - chr5_3:9236531-9236550 None:intergenic 35.0%
!! AGCAGTGGATTATAGTTATC+CGG + chr5_3:9237024-9237043 Msa0797150:CDS 35.0%
TAGAACATGAGATTTGATCG+TGG - chr5_3:9237239-9237258 None:intergenic 35.0%
GCTAAAAGGAATGCATTGTT+TGG - chr5_3:9237544-9237563 None:intergenic 35.0%
!! CTTGTTGTTCATGACTCAAA+TGG + chr5_3:9237594-9237613 Msa0797150:three_prime_UTR 35.0%
! TCTCTCAATTTTACCCTCTT+AGG + chr5_3:9237728-9237747 Msa0797150:three_prime_UTR 35.0%
ATCTAATCTACCATTCTGGT+TGG - chr5_3:9237760-9237779 None:intergenic 35.0%
ACAATGATGCATGCAACAAA+TGG + chr5_3:9237857-9237876 Msa0797150:three_prime_UTR 35.0%
ACAAATGGACATGACATACA+TGG + chr5_3:9237872-9237891 Msa0797150:three_prime_UTR 35.0%
ATGACATACATGGATGATGA+TGG + chr5_3:9237882-9237901 Msa0797150:three_prime_UTR 35.0%
GCTTCAATTCAACAAATGTG+TGG - chr5_3:9237972-9237991 None:intergenic 35.0%
TAGTGCAAAAATGTTGCATG+TGG + chr5_3:9237994-9238013 Msa0797150:three_prime_UTR 35.0%
! TTGTGTTAGTGTTGTTGGAT+AGG + chr5_3:9238088-9238107 Msa0797150:three_prime_UTR 35.0%
! TGTGTTAGTGTTGTTGGATA+GGG + chr5_3:9238089-9238108 Msa0797150:three_prime_UTR 35.0%
GTTTGGACAAAAGCTACAAA+AGG + chr5_3:9238266-9238285 Msa0797150:intron 35.0%
! TTAGTGCCTGTTTGAAATAG+CGG - chr5_3:9238347-9238366 None:intergenic 35.0%
! GAAAGTATGAAGAGAGAGAG+AGG - chr5_3:9232185-9232204 None:intergenic 40.0%
AATGGCCCACGAATTTGTAT+TGG - chr5_3:9232253-9232272 None:intergenic 40.0%
!!! GTGCTAGTTTTGTCTTGTTG+TGG + chr5_3:9232438-9232457 Msa0797150:intron 40.0%
GCAGAAGAACAAGAACAGAT+TGG + chr5_3:9232815-9232834 Msa0797150:intron 40.0%
TGATCTGCTTACTTGTGTAG+AGG + chr5_3:9232841-9232860 Msa0797150:five_prime_UTR 40.0%
TGCACTGCCAATGATTTACA+AGG + chr5_3:9232896-9232915 Msa0797150:CDS 40.0%
CTGCCAATGATTTACAAGGA+TGG + chr5_3:9232900-9232919 Msa0797150:CDS 40.0%
GGATGGAAAGATTTCCCAAA+AGG + chr5_3:9232917-9232936 Msa0797150:CDS 40.0%
! GAAGAACCCTAAGTCCTTTT+GGG - chr5_3:9232934-9232953 None:intergenic 40.0%
! AGAAGAACCCTAAGTCCTTT+TGG - chr5_3:9232935-9232954 None:intergenic 40.0%
CAGAATTGTTGTCTCCTTCA+AGG - chr5_3:9232958-9232977 None:intergenic 40.0%
GGCAAGCCAAACGAAAAATA+TGG - chr5_3:9233039-9233058 None:intergenic 40.0%
! GCCACTTTCCTTAGTAAAGA+TGG + chr5_3:9233069-9233088 Msa0797150:intron 40.0%
CAACATGCAACTAAAACCAC+AGG - chr5_3:9233181-9233200 None:intergenic 40.0%
TGTGTGGAATTTGACTCTAG+AGG + chr5_3:9233293-9233312 Msa0797150:intron 40.0%
GTGTGGAATTTGACTCTAGA+GGG + chr5_3:9233294-9233313 Msa0797150:intron 40.0%
! TGACTCTAGAGGGCTTATAA+AGG + chr5_3:9233304-9233323 Msa0797150:intron 40.0%
TCATGATTCCGACTTTATCG+TGG + chr5_3:9233425-9233444 Msa0797150:intron 40.0%
ACTACTTGAGATTGCTGACA+AGG - chr5_3:9233731-9233750 None:intergenic 40.0%
!! ATGGCAACATGGAAGCATTT+GGG - chr5_3:9233754-9233773 None:intergenic 40.0%
!! TATGGCAACATGGAAGCATT+TGG - chr5_3:9233755-9233774 None:intergenic 40.0%
TGTGAGTATGGAGAACTTGA+CGG + chr5_3:9233898-9233917 Msa0797150:intron 40.0%
TTTGTGTCCTGCAGAAGTTT+AGG + chr5_3:9233935-9233954 Msa0797150:intron 40.0%
! TTTAGAGCCTAAACTTCTGC+AGG - chr5_3:9233945-9233964 None:intergenic 40.0%
TGCGTTACTCGGATTTATCA+TGG + chr5_3:9234046-9234065 Msa0797150:intron 40.0%
CAAATTTCTCGAGAATGCGA+AGG + chr5_3:9234253-9234272 Msa0797150:CDS 40.0%
ACTAGTAAACACCCTCAACA+TGG - chr5_3:9234343-9234362 None:intergenic 40.0%
CACAATGATGAAGTGCATTG+CGG + chr5_3:9234558-9234577 Msa0797150:CDS 40.0%
! AGTGCATTGCGGTAAGATTT+TGG + chr5_3:9234569-9234588 Msa0797150:intron 40.0%
TCTGTCTGAATCGCTTAAAC+CGG + chr5_3:9234981-9235000 Msa0797150:CDS 40.0%
GACTCTACAGATTCTTTGAC+CGG - chr5_3:9235003-9235022 None:intergenic 40.0%
!!! CTTGCCCCTTGTTTTAATTG+AGG - chr5_3:9235159-9235178 None:intergenic 40.0%
CTCAATTAAAACAAGGGGCA+AGG + chr5_3:9235157-9235176 Msa0797150:CDS 40.0%
! TTGAGCAATTAGTCTGCTCA+TGG - chr5_3:9235203-9235222 None:intergenic 40.0%
AAAGAAAGTGGGGAACATGA+CGG + chr5_3:9235228-9235247 Msa0797150:intron 40.0%
ACCTACGAAACCTCTGATTA+AGG + chr5_3:9235311-9235330 Msa0797150:CDS 40.0%
TACGAAACCTCTGATTAAGG+CGG + chr5_3:9235314-9235333 Msa0797150:CDS 40.0%
CAGAGAAAGAAGAAGGAGAA+GGG - chr5_3:9235600-9235619 None:intergenic 40.0%
ACAGAGAAAGAAGAAGGAGA+AGG - chr5_3:9235601-9235620 None:intergenic 40.0%
!! CTGATTACACTTCTGGTTCT+TGG + chr5_3:9235889-9235908 Msa0797150:intron 40.0%
!!! ACACTTCTGGTTCTTGGTTT+TGG + chr5_3:9235895-9235914 Msa0797150:intron 40.0%
AGCCATTCCTTCTCGTATAT+TGG + chr5_3:9235988-9236007 Msa0797150:CDS 40.0%
CTCCAATATACGAGAAGGAA+TGG - chr5_3:9235993-9236012 None:intergenic 40.0%
TGCATAGGATCTCTTCGATT+TGG - chr5_3:9236235-9236254 None:intergenic 40.0%
ATCGAAGAGATCCTATGCAA+AGG + chr5_3:9236236-9236255 Msa0797150:CDS 40.0%
!! TATGGTGGATAGGCCATAAT+CGG - chr5_3:9236280-9236299 None:intergenic 40.0%
TTCCAATGCCAACTTTCTGT+AGG - chr5_3:9236415-9236434 None:intergenic 40.0%
GATAAAAAGATTACCCCTGG+CGG - chr5_3:9236445-9236464 None:intergenic 40.0%
TCGGATAAAAAGATTACCCC+TGG - chr5_3:9236448-9236467 None:intergenic 40.0%
GACCTGTGATGTAGAAATCA+TGG + chr5_3:9236526-9236545 Msa0797150:intron 40.0%
!!! ACTGATTTTTCAGGTGCATG+TGG + chr5_3:9236569-9236588 Msa0797150:intron 40.0%
TAAGGGATACAGTGAGTTTG+AGG - chr5_3:9236624-9236643 None:intergenic 40.0%
! GCTGACTTACTTGAGTGTAA+GGG - chr5_3:9236641-9236660 None:intergenic 40.0%
!! TGCTGACTTACTTGAGTGTA+AGG - chr5_3:9236642-9236661 None:intergenic 40.0%
ATCAAACTGCAGAATATGGC+TGG + chr5_3:9236986-9237005 Msa0797150:intron 40.0%
TCAAACTGCAGAATATGGCT+GGG + chr5_3:9236987-9237006 Msa0797150:intron 40.0%
AAAGGGAAGAACTGCATTAC+CGG - chr5_3:9237046-9237065 None:intergenic 40.0%
CAATAACCGTTCCTACAATG+TGG + chr5_3:9237110-9237129 Msa0797150:intron 40.0%
ATATTCATTGATGCAGGCAG+AGG + chr5_3:9237416-9237435 Msa0797150:intron 40.0%
TATCCATTGAAGGAGGTTTG+AGG - chr5_3:9237503-9237522 None:intergenic 40.0%
AACACACTATCCATTGAAGG+AGG - chr5_3:9237510-9237529 None:intergenic 40.0%
TCCTTCAATGGATAGTGTGT+TGG + chr5_3:9237509-9237528 Msa0797150:CDS 40.0%
TCCAACACACTATCCATTGA+AGG - chr5_3:9237513-9237532 None:intergenic 40.0%
! TCCTTTTAGCAAGAAGAGCA+AGG + chr5_3:9237554-9237573 Msa0797150:CDS 40.0%
! CCTTTTAGCAAGAAGAGCAA+GGG + chr5_3:9237555-9237574 Msa0797150:CDS 40.0%
TCATGAACAACAAGTCAGCA+TGG - chr5_3:9237588-9237607 None:intergenic 40.0%
AGTAACTAGCACTGTTTGGT+GGG - chr5_3:9237622-9237641 None:intergenic 40.0%
CAACAGTAACTAGCACTGTT+TGG - chr5_3:9237626-9237645 None:intergenic 40.0%
ACAGTGCTAGTTACTGTTGA+TGG + chr5_3:9237627-9237646 Msa0797150:three_prime_UTR 40.0%
!! TAGTTACTGTTGATGGTGGT+GGG + chr5_3:9237634-9237653 Msa0797150:three_prime_UTR 40.0%
TACAACAGTCCATATGGCAT+TGG - chr5_3:9237697-9237716 None:intergenic 40.0%
! AATCTACCATTCTGGTTGGT+TGG - chr5_3:9237756-9237775 None:intergenic 40.0%
TCATTTCCCAGAAGCTACAT+AGG - chr5_3:9237834-9237853 None:intergenic 40.0%
! GTGTTAGTGTTGTTGGATAG+GGG + chr5_3:9238090-9238109 Msa0797150:three_prime_UTR 40.0%
! TGTTAGTGTTGTTGGATAGG+GGG + chr5_3:9238091-9238110 Msa0797150:three_prime_UTR 40.0%
GGAAAGTTTAGGTAGGAAGT+AGG + chr5_3:9238136-9238155 Msa0797150:three_prime_UTR 40.0%
TGATTGATGAGTCCAGTCTT+TGG + chr5_3:9238193-9238212 Msa0797150:three_prime_UTR 40.0%
! TTTTCACGTTCAAAACGCCT+CGG + chr5_3:9238300-9238319 Msa0797150:intron 40.0%
! ATTCCACCGCTATTTCAAAC+AGG + chr5_3:9238338-9238357 Msa0797150:intron 40.0%
!! GGCCATTTTCTTTTCAGCCA+AGG + chr5_3:9232266-9232285 Msa0797150:five_prime_UTR 45.0%
AAAGGATGCCAAACCAGCTA+TGG + chr5_3:9232871-9232890 Msa0797150:exon 45.0%
AGTGCAAACCATAGCTGGTT+TGG - chr5_3:9232882-9232901 None:intergenic 45.0%
CTTAGGGTTCTTCTCCTTGA+AGG + chr5_3:9232941-9232960 Msa0797150:CDS 45.0%
AGGAAAGTGGCAAAGAAGTG+AGG - chr5_3:9233060-9233079 None:intergenic 45.0%
AGAGGGGACCATCTTTACTA+AGG - chr5_3:9233080-9233099 None:intergenic 45.0%
ATGCTTCCATGTTGCCATAG+TGG + chr5_3:9233756-9233775 Msa0797150:CDS 45.0%
TTACCTCCACTATGGCAACA+TGG - chr5_3:9233765-9233784 None:intergenic 45.0%
ATACTCACCTGCAACTCAGA+TGG - chr5_3:9234212-9234231 None:intergenic 45.0%
GAGAGCAGACAAATTAGGCT+CGG - chr5_3:9234306-9234325 None:intergenic 45.0%
GTAAACACCCTCAACATGGA+TGG - chr5_3:9234339-9234358 None:intergenic 45.0%
TGCATCGAAAATCAGGAGGA+CGG - chr5_3:9234740-9234759 None:intergenic 45.0%
CGTATGCATCGAAAATCAGG+AGG - chr5_3:9234744-9234763 None:intergenic 45.0%
GCACGTATGCATCGAAAATC+AGG - chr5_3:9234747-9234766 None:intergenic 45.0%
CCTCAGAAAGTGGTTTAGTG+AGG - chr5_3:9234818-9234837 None:intergenic 45.0%
CCTCACTAAACCACTTTCTG+AGG + chr5_3:9234815-9234834 Msa0797150:CDS 45.0%
TTCAGCTTGTCCTCAGAAAG+TGG - chr5_3:9234828-9234847 None:intergenic 45.0%
TTGGCAGCATGTTGTTCACA+AGG + chr5_3:9234854-9234873 Msa0797150:CDS 45.0%
AGCATGTTGTTCACAAGGTC+TGG + chr5_3:9234859-9234878 Msa0797150:intron 45.0%
CATGTAGTGCGTTGTCTGTT+TGG - chr5_3:9235038-9235057 None:intergenic 45.0%
GACGGCAAGCGATAAATATC+CGG + chr5_3:9235122-9235141 Msa0797150:CDS 45.0%
AAAACAAGGGGCAAGGTTAG+TGG + chr5_3:9235164-9235183 Msa0797150:intron 45.0%
ATCAGAGGTTTCGTAGGTTG+AGG - chr5_3:9235309-9235328 None:intergenic 45.0%
GCCTTAATCAGAGGTTTCGT+AGG - chr5_3:9235315-9235334 None:intergenic 45.0%
TCTTCTTCCGCCTTAATCAG+AGG - chr5_3:9235324-9235343 None:intergenic 45.0%
! GCGGAAGAAGATTTTGCCAA+CGG + chr5_3:9235333-9235352 Msa0797150:CDS 45.0%
! AGATTTTGCCAACGGTTCCA+AGG + chr5_3:9235341-9235360 Msa0797150:CDS 45.0%
! GATTTTGCCAACGGTTCCAA+GGG + chr5_3:9235342-9235361 Msa0797150:CDS 45.0%
AAAAAGTTTCTCGGCAACGC+TGG + chr5_3:9235396-9235415 Msa0797150:CDS 45.0%
CATGAGCGTGTGTATGCAAA+TGG - chr5_3:9235625-9235644 None:intergenic 45.0%
GCATGCAGATGCATCATGTT+GGG - chr5_3:9235723-9235742 None:intergenic 45.0%
AGCATGCAGATGCATCATGT+TGG - chr5_3:9235724-9235743 None:intergenic 45.0%
!!! CTGGTTCTTGGTTTTGGTTC+AGG + chr5_3:9235901-9235920 Msa0797150:intron 45.0%
!!! TGGTTTTGGTTCAGGTAGAC+TGG + chr5_3:9235909-9235928 Msa0797150:intron 45.0%
TGAAAGTCGACGGTTTGACA+AGG + chr5_3:9236017-9236036 Msa0797150:CDS 45.0%
CGGTTTGACAAGGCATAATG+TGG + chr5_3:9236027-9236046 Msa0797150:CDS 45.0%
CAAGAGACAGATCATCCACA+CGG + chr5_3:9236192-9236211 Msa0797150:intron 45.0%
! ATTTTCGATCTTCGTCCGTG+TGG - chr5_3:9236210-9236229 None:intergenic 45.0%
ACACGGACGAAGATCGAAAA+TGG + chr5_3:9236209-9236228 Msa0797150:CDS 45.0%
AGCTCCTGCATATCCTATGT+GGG + chr5_3:9236324-9236343 Msa0797150:CDS 45.0%
!! AAACAGCTGGTGTACCGATT+TGG + chr5_3:9236362-9236381 Msa0797150:CDS 45.0%
TATGGCAGCCTACAGAAAGT+TGG + chr5_3:9236404-9236423 Msa0797150:CDS 45.0%
AGCCTACAGAAAGTTGGCAT+TGG + chr5_3:9236410-9236429 Msa0797150:CDS 45.0%
! TTTGAGGTGGAGGCAACATT+GGG - chr5_3:9236608-9236627 None:intergenic 45.0%
! ATACAGTGAGTTTGAGGTGG+AGG - chr5_3:9236618-9236637 None:intergenic 45.0%
TTAAGGGTCGACCACATTGT+AGG - chr5_3:9237124-9237143 None:intergenic 45.0%
CAATGTGGTCGACCCTTAAT+TGG + chr5_3:9237125-9237144 Msa0797150:intron 45.0%
! CAGAGTGTCCAACTATAGTG+CGG - chr5_3:9237308-9237327 None:intergenic 45.0%
AGGAGGCAATAAACAAGCCA+TGG + chr5_3:9237460-9237479 Msa0797150:CDS 45.0%
CCTATAGGTAAAGGTAGCCA+TGG - chr5_3:9237480-9237499 None:intergenic 45.0%
CCATGGCTACCTTTACCTAT+AGG + chr5_3:9237477-9237496 Msa0797150:CDS 45.0%
! GGTTTGAGGCCTATAGGTAA+AGG - chr5_3:9237489-9237508 None:intergenic 45.0%
CCCTTGCTCTTCTTGCTAAA+AGG - chr5_3:9237558-9237577 None:intergenic 45.0%
CAGTAACTAGCACTGTTTGG+TGG - chr5_3:9237623-9237642 None:intergenic 45.0%
! GTGCTAGTTACTGTTGATGG+TGG + chr5_3:9237630-9237649 Msa0797150:three_prime_UTR 45.0%
!! CTAGTTACTGTTGATGGTGG+TGG + chr5_3:9237633-9237652 Msa0797150:three_prime_UTR 45.0%
!!! GACCAGTTATTTTTCCCCTG+TGG + chr5_3:9237788-9237807 Msa0797150:three_prime_UTR 45.0%
GACCACAGGGGAAAAATAAC+TGG - chr5_3:9237793-9237812 None:intergenic 45.0%
TAGGTGTCCGTGTTATGGTA+GGG - chr5_3:9237815-9237834 None:intergenic 45.0%
ATAGGTGTCCGTGTTATGGT+AGG - chr5_3:9237816-9237835 None:intergenic 45.0%
CTACATAGGTGTCCGTGTTA+TGG - chr5_3:9237820-9237839 None:intergenic 45.0%
TTGATGAGTCCAGTCTTTGG+CGG + chr5_3:9238196-9238215 Msa0797150:three_prime_UTR 45.0%
GAGTGGAAAAAAACGCCGTT+TGG + chr5_3:9238249-9238268 Msa0797150:intron 45.0%
TTTCACGTTCAAAACGCCTC+GGG + chr5_3:9238301-9238320 Msa0797150:intron 45.0%
CGGTGGAATAGCATTTATCG+CGG - chr5_3:9238327-9238346 None:intergenic 45.0%
!!! CAATTTTTTATTTATTTTTT+TGG - chr5_3:9237934-9237953 None:intergenic 5.0%
!! CAAAAAAATAAATAAAAAAT+TGG + chr5_3:9237932-9237951 Msa0797150:three_prime_UTR 5.0%
GTAAAGTGCAGCGCGTTGAA+GGG - chr5_3:9232163-9232182 None:intergenic 50.0%
TTGGCAGTGCAAACCATAGC+TGG - chr5_3:9232887-9232906 None:intergenic 50.0%
! CTCTGGAAATTTGTGGCCTG+TGG + chr5_3:9233162-9233181 Msa0797150:intron 50.0%
CTTCCATGTTGCCATAGTGG+AGG + chr5_3:9233759-9233778 Msa0797150:CDS 50.0%
GTGAGTATAAGCTGCCCTGA+TGG + chr5_3:9234224-9234243 Msa0797150:CDS 50.0%
AGTATAAGCTGCCCTGATGG+AGG + chr5_3:9234227-9234246 Msa0797150:CDS 50.0%
CAATCAGGCATTCAATGCCG+AGG + chr5_3:9234951-9234970 Msa0797150:intron 50.0%
! GTCTGTTTGGAGCTGCAACA+TGG - chr5_3:9235025-9235044 None:intergenic 50.0%
AATTGAGGAGTCGAAGGAGC+CGG - chr5_3:9235144-9235163 None:intergenic 50.0%
ATTCTCACCCTTGGAACCGT+TGG - chr5_3:9235352-9235371 None:intergenic 50.0%
AACGGTTCCAAGGGTGAGAA+TGG + chr5_3:9235351-9235370 Msa0797150:CDS 50.0%
ACGGTTCCAAGGGTGAGAAT+GGG + chr5_3:9235352-9235371 Msa0797150:CDS 50.0%
AAGAAGGAGAAGGGTAGCGA+AGG - chr5_3:9235591-9235610 None:intergenic 50.0%
GTGAAGGCAGTGGAACATCT+AGG + chr5_3:9235956-9235975 Msa0797150:CDS 50.0%
ATATGCAGGAGCTGGAGGAA+AGG - chr5_3:9236317-9236336 None:intergenic 50.0%
ATAGGATATGCAGGAGCTGG+AGG - chr5_3:9236322-9236341 None:intergenic 50.0%
CACATAGGATATGCAGGAGC+TGG - chr5_3:9236325-9236344 None:intergenic 50.0%
CAGCTCCTGCATATCCTATG+TGG + chr5_3:9236323-9236342 Msa0797150:CDS 50.0%
GCTCCTGCATATCCTATGTG+GGG + chr5_3:9236325-9236344 Msa0797150:CDS 50.0%
TATCCTATGTGGGGCCAACA+CGG + chr5_3:9236334-9236353 Msa0797150:CDS 50.0%
! CAGCTGTTTGACTTCCGTGT+TGG - chr5_3:9236351-9236370 None:intergenic 50.0%
CAACACGGAAGTCAAACAGC+TGG + chr5_3:9236349-9236368 Msa0797150:CDS 50.0%
!! TGTACCGATTTGGAGTCCTC+CGG + chr5_3:9236372-9236391 Msa0797150:CDS 50.0%
TAACCCGGAGGACTCCAAAT+CGG - chr5_3:9236379-9236398 None:intergenic 50.0%
CTTTCTGTAGGCTGCCATAG+AGG - chr5_3:9236403-9236422 None:intergenic 50.0%
ATTGGAAGCCATATCCGCCA+GGG + chr5_3:9236428-9236447 Msa0797150:CDS 50.0%
! AAGATTACCCCTGGCGGATA+TGG - chr5_3:9236439-9236458 None:intergenic 50.0%
TTCAGGTGCATGTGGATGCA+TGG + chr5_3:9236577-9236596 Msa0797150:intron 50.0%
TCAGGTGCATGTGGATGCAT+GGG + chr5_3:9236578-9236597 Msa0797150:intron 50.0%
! GTTTGAGGTGGAGGCAACAT+TGG - chr5_3:9236609-9236628 None:intergenic 50.0%
GGGATACAGTGAGTTTGAGG+TGG - chr5_3:9236621-9236640 None:intergenic 50.0%
GATGCACAACGCTAAAGCAG+TGG + chr5_3:9237009-9237028 Msa0797150:CDS 50.0%
GGTCGACCACATTGTAGGAA+CGG - chr5_3:9237119-9237138 None:intergenic 50.0%
TTCTGCAGCCGCACTATAGT+TGG + chr5_3:9237297-9237316 Msa0797150:intron 50.0%
ATTGATGCAGGCAGAGGAAG+TGG + chr5_3:9237422-9237441 Msa0797150:intron 50.0%
!! AGTGGTGGACAAGGCTGTAA+AGG + chr5_3:9237440-9237459 Msa0797150:CDS 50.0%
! GAAGGAGGTTTGAGGCCTAT+AGG - chr5_3:9237495-9237514 None:intergenic 50.0%
AGGCCTCAAACCTCCTTCAA+TGG + chr5_3:9237497-9237516 Msa0797150:CDS 50.0%
!! TTACTGTTGATGGTGGTGGG+TGG + chr5_3:9237637-9237656 Msa0797150:three_prime_UTR 50.0%
! TGGTGGACAGACAAACTTGC+TGG + chr5_3:9237657-9237676 Msa0797150:three_prime_UTR 50.0%
!! AACTTGCTGGCAGACATGCA+TGG + chr5_3:9237670-9237689 Msa0797150:three_prime_UTR 50.0%
! ACTTGCTGGCAGACATGCAT+GGG + chr5_3:9237671-9237690 Msa0797150:three_prime_UTR 50.0%
ATGCATGGGCCAATGCCATA+TGG + chr5_3:9237685-9237704 Msa0797150:three_prime_UTR 50.0%
! TGGTTGGTTGGAGCCTAAGA+GGG - chr5_3:9237744-9237763 None:intergenic 50.0%
TAGGCTCCAACCAACCAGAA+TGG + chr5_3:9237747-9237766 Msa0797150:three_prime_UTR 50.0%
TGTTATGGTAGGGACCACAG+GGG - chr5_3:9237805-9237824 None:intergenic 50.0%
GTGTTATGGTAGGGACCACA+GGG - chr5_3:9237806-9237825 None:intergenic 50.0%
CTGTGGTCCCTACCATAACA+CGG + chr5_3:9237805-9237824 Msa0797150:three_prime_UTR 50.0%
ACGGACACCTATGTAGCTTC+TGG + chr5_3:9237824-9237843 Msa0797150:three_prime_UTR 50.0%
CGGACACCTATGTAGCTTCT+GGG + chr5_3:9237825-9237844 Msa0797150:three_prime_UTR 50.0%
GCTTAGTATCCGCCAAAGAC+TGG - chr5_3:9238208-9238227 None:intergenic 50.0%
TAAGCGTGTGTTTGCCACAG+CGG + chr5_3:9238223-9238242 Msa0797150:intron 50.0%
! GTGCCTGTTTGAAATAGCGG+TGG - chr5_3:9238344-9238363 None:intergenic 50.0%
GGTAAAGTGCAGCGCGTTGA+AGG - chr5_3:9232164-9232183 None:intergenic 55.0%
! TTCAGACAGAGCGCTTGCCT+CGG - chr5_3:9234971-9234990 None:intergenic 55.0%
! GGGGCAAGGTTAGTGGATGA+TGG + chr5_3:9235171-9235190 Msa0797150:intron 55.0%
GAAAGTGGGGAACATGACGG+TGG + chr5_3:9235231-9235250 Msa0797150:intron 55.0%
CGGTTCCAAGGGTGAGAATG+GGG + chr5_3:9235353-9235372 Msa0797150:CDS 55.0%
TGAAGCCCCATTCTCACCCT+TGG - chr5_3:9235361-9235380 None:intergenic 55.0%
AAGTTTCTCGGCAACGCTGG+TGG + chr5_3:9235399-9235418 Msa0797150:CDS 55.0%
TGGCCCCACATAGGATATGC+AGG - chr5_3:9236331-9236350 None:intergenic 55.0%
!! GTACCGATTTGGAGTCCTCC+GGG + chr5_3:9236373-9236392 Msa0797150:CDS 55.0%
GTCCTCCGGGTTATCCTCTA+TGG + chr5_3:9236386-9236405 Msa0797150:CDS 55.0%
TGCCATAGAGGATAACCCGG+AGG - chr5_3:9236391-9236410 None:intergenic 55.0%
GGCTGCCATAGAGGATAACC+CGG - chr5_3:9236394-9236413 None:intergenic 55.0%
CATTGGAAGCCATATCCGCC+AGG + chr5_3:9236427-9236446 Msa0797150:CDS 55.0%
TTGGAAGCCATATCCGCCAG+GGG + chr5_3:9236429-9236448 Msa0797150:CDS 55.0%
CAGGTGCATGTGGATGCATG+GGG + chr5_3:9236579-9236598 Msa0797150:intron 55.0%
GGTGGACAAGGCTGTAAAGG+AGG + chr5_3:9237443-9237462 Msa0797150:CDS 55.0%
! CTGGTTGGTTGGAGCCTAAG+AGG - chr5_3:9237745-9237764 None:intergenic 55.0%
CGTGTTATGGTAGGGACCAC+AGG - chr5_3:9237807-9237826 None:intergenic 55.0%
! TTTTTCCACTCCCACCGCTG+TGG - chr5_3:9238240-9238259 None:intergenic 55.0%
ATAGCATTTATCGCGGCCCG+AGG - chr5_3:9238320-9238339 None:intergenic 55.0%
GCAACTCAGATGGACGCACG+AGG - chr5_3:9234202-9234221 None:intergenic 60.0%
CGTGCGTCCATCTGAGTTGC+AGG + chr5_3:9234202-9234221 Msa0797150:intron 60.0%
! CTTCCGTGTTGGCCCCACAT+AGG - chr5_3:9236340-9236359 None:intergenic 60.0%
GATGCAGGCAGAGGAAGTGG+TGG + chr5_3:9237425-9237444 Msa0797150:intron 60.0%
!! GGCAGAGGAAGTGGTGGACA+AGG + chr5_3:9237431-9237450 Msa0797150:intron 60.0%
!! CTGTTGATGGTGGTGGGTGG+TGG + chr5_3:9237640-9237659 Msa0797150:three_prime_UTR 60.0%
CGTGTGTTTGCCACAGCGGT+GGG + chr5_3:9238227-9238246 Msa0797150:intron 60.0%
GCGTGTGTTTGCCACAGCGG+TGG + chr5_3:9238226-9238245 Msa0797150:intron 65.0%
GTTTGCCACAGCGGTGGGAG+TGG + chr5_3:9238232-9238251 Msa0797150:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9232057 9238523 9232057 ID=Msa0797150;Name=Msa0797150
chr5_3 mRNA 9232057 9238523 9232057 ID=Msa0797150-mRNA-1;Parent=Msa0797150;Name=Msa0797150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=302|0.84|0.78|1|0.69|0.5|14|789|494
chr5_3 exon 9232057 9232287 9232057 ID=Msa0797150-mRNA-1:exon:3971;Parent=Msa0797150-mRNA-1
chr5_3 exon 9232819 9233019 9232819 ID=Msa0797150-mRNA-1:exon:3972;Parent=Msa0797150-mRNA-1
chr5_3 exon 9233701 9233780 9233701 ID=Msa0797150-mRNA-1:exon:3973;Parent=Msa0797150-mRNA-1
chr5_3 exon 9234224 9234290 9234224 ID=Msa0797150-mRNA-1:exon:3974;Parent=Msa0797150-mRNA-1
chr5_3 exon 9234533 9234579 9234533 ID=Msa0797150-mRNA-1:exon:3975;Parent=Msa0797150-mRNA-1
chr5_3 exon 9234798 9234875 9234798 ID=Msa0797150-mRNA-1:exon:3976;Parent=Msa0797150-mRNA-1
chr5_3 exon 9234958 9235178 9234958 ID=Msa0797150-mRNA-1:exon:3977;Parent=Msa0797150-mRNA-1
chr5_3 exon 9235302 9235494 9235302 ID=Msa0797150-mRNA-1:exon:3978;Parent=Msa0797150-mRNA-1
chr5_3 exon 9235923 9236063 9235923 ID=Msa0797150-mRNA-1:exon:3979;Parent=Msa0797150-mRNA-1
chr5_3 exon 9236202 9236450 9236202 ID=Msa0797150-mRNA-1:exon:3980;Parent=Msa0797150-mRNA-1
chr5_3 exon 9236582 9236650 9236582 ID=Msa0797150-mRNA-1:exon:3981;Parent=Msa0797150-mRNA-1
chr5_3 exon 9236998 9237045 9236998 ID=Msa0797150-mRNA-1:exon:3982;Parent=Msa0797150-mRNA-1
chr5_3 exon 9237432 9238225 9237432 ID=Msa0797150-mRNA-1:exon:3983;Parent=Msa0797150-mRNA-1
chr5_3 exon 9238367 9238523 9238367 ID=Msa0797150-mRNA-1:exon:3984;Parent=Msa0797150-mRNA-1
chr5_3 five_prime_UTR 9232057 9232287 9232057 ID=Msa0797150-mRNA-1:five_prime_utr;Parent=Msa0797150-mRNA-1
chr5_3 five_prime_UTR 9232819 9232889 9232819 ID=Msa0797150-mRNA-1:five_prime_utr;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9232890 9233019 9232890 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9233701 9233780 9233701 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9234224 9234290 9234224 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9234533 9234579 9234533 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9234798 9234875 9234798 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9234958 9235178 9234958 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9235302 9235494 9235302 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9235923 9236063 9235923 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9236202 9236450 9236202 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9236582 9236650 9236582 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9236998 9237045 9236998 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 CDS 9237432 9237593 9237432 ID=Msa0797150-mRNA-1:cds;Parent=Msa0797150-mRNA-1
chr5_3 three_prime_UTR 9237594 9238225 9237594 ID=Msa0797150-mRNA-1:three_prime_utr;Parent=Msa0797150-mRNA-1
chr5_3 three_prime_UTR 9238367 9238523 9238367 ID=Msa0797150-mRNA-1:three_prime_utr;Parent=Msa0797150-mRNA-1
Gene Sequence

>Msa0797150

ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAAGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAACAAAGCTTGAATCTATGGACTATAATGTTTCTACGTTCTACAATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGTCCCAAATGCTTCCATGTTGCCATAGTGGAGGTGAGTATAAGCTGCCCTGATGGAGGTTTCAAATTTCTCGAGAATGCGAAGGACTTGCCAACTATTATGACTTCGAATAGTCAGTGCATAAACACAATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTCACTAAACCACTTTCTGAGGACAAGCTGAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTCAATGCCGAGGCAAGCGCTCTGTCTGAATCGCTTAAACCGGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTCCAAACAGACAACGCACTACATGAAAGTACAATATCAATAGATTTAGATAAGGTGTCCAAGTTTAGTGATAATGAACATGAGAATTCGACGGCAAGCGATAAATATCCGGCTCCTTCGACTCCTCAATTAAAACAAGGGGCAAGTTCTCCTCAACCTACGAAACCTCTGATTAAGGCGGAAGAAGATTTTGCCAACGGTTCCAAGGGTGAGAATGGGGCTTCATTGAATCCACAGAATAAAAAGTTTCTCGGCAACGCTGGTGGTAATACATCTCCAAATAAAACACGTGCTGTTAACGATCCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACCGCTGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACATCTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGACGGTTTGACAAGGCATAATGTGGCAAGCCATCTTCAGATCATCCACACGGACGAAGATCGAAAATGGCCAAATCGAAGAGATCCTATGCAAAGGAACTATTGTATGCAAAGACCGATTATGGCCTATCCACCATATCATTCTAATCACACCTTTCCTCCAGCTCCTGCATATCCTATGTGGGGCCAACACGGAAGTCAAACAGCTGGTGTACCGATTTGGAGTCCTCCGGGTTATCCTCTATGGCAGCCTACAGAAAGTTGGCATTGGAAGCCATATCCGCCAGGGGTGCATGTGGATGCATGGGGTAACCCAATGTTGCCTCCACCTCAAACTCACTGTATCCCTTACACTCAAAATATGGCTGGGATGCACAACGCTAAAGCAGTGGATTATAGTTATCCGGCAGAGGAAGTGGTGGACAAGGCTGTAAAGGAGGCAATAAACAAGCCATGGCTACCTTTACCTATAGGCCTCAAACCTCCTTCAATGGATAGTGTGTTGGATGAACTTTCCAAACAATGCATTCCTTTTAGCAAGAAGAGCAAGGGCTCTAGACCATGCTGA
Protein sequence

>Msa0797150

MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRTKLESMDYNVSTFYNENEALSAISSSPKCFHVAIVEVSISCPDGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAEASALSESLKPVKESVESMLQLQTDNALHESTISIDLDKVSKFSDNEHENSTASDKYPAPSTPQLKQGASSPQPTKPLIKAEEDFANGSKGENGASLNPQNKKFLGNAGGNTSPNKTRAVNDPCENKANRKKMKVDWTAELHKKFVKAVEHLGIDQAIPSRILELMKVDGLTRHNVASHLQIIHTDEDRKWPNRRDPMQRNYCMQRPIMAYPPYHSNHTFPPAPAYPMWGQHGSQTAGVPIWSPPGYPLWQPTESWHWKPYPPGVHVDAWGNPMLPPPQTHCIPYTQNMAGMHNAKAVDYSYPAEEVVDKAVKEAINKPWLPLPIGLKPPSMDSVLDELSKQCIPFSKKSKGSRPC*