AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713540 MtrunA17_Chr5g0400461 96.119 335 13 0 1 335 1 335 0.0 674
Msa0713540 MtrunA17_Chr4g0054791 60.290 345 100 9 1 335 1 318 7.21e-132 378
Msa0713540 MtrunA17_Chr6g0481091 62.500 176 56 2 1 173 1 169 3.13e-74 229
Msa0713540 MtrunA17_Chr3g0109821 64.024 164 48 2 1 160 1 157 4.58e-70 230
Msa0713540 MtrunA17_Chr5g0433781 63.804 163 49 2 1 160 1 156 7.67e-67 221
Msa0713540 MtrunA17_Chr2g0309891 46.930 228 102 3 1 216 1 221 8.07e-67 213
Msa0713540 MtrunA17_Chr3g0128151 53.529 170 69 3 5 171 21 183 5.23e-53 183
Msa0713540 MtrunA17_Chr5g0428991 53.704 162 65 3 6 164 25 179 1.39e-52 183
Msa0713540 MtrunA17_Chr1g0201021 55.769 156 59 2 8 160 21 169 1.79e-52 181
Msa0713540 MtrunA17_Chr3g0128111 52.201 159 66 2 9 164 45 196 4.42e-52 172
Msa0713540 MtrunA17_Chr2g0318081 51.190 168 68 4 1 164 11 168 2.31e-51 174
Msa0713540 MtrunA17_Chr2g0309331 50.307 163 69 4 2 160 6 160 8.58e-51 172
Msa0713540 MtrunA17_Chr4g0018391 49.057 159 72 3 4 160 5 156 1.07e-50 172
Msa0713540 MtrunA17_Chr7g0252971 47.059 170 79 4 4 164 6 173 1.20e-50 171
Msa0713540 MtrunA17_Chr8g0384721 48.588 177 71 4 2 168 3 169 1.37e-50 169
Msa0713540 MtrunA17_Chr4g0056541 49.686 159 71 3 4 160 5 156 1.73e-50 171
Msa0713540 MtrunA17_Chr3g0130731 51.190 168 66 4 2 163 3 160 2.77e-50 169
Msa0713540 MtrunA17_Chr8g0359921 52.469 162 63 3 5 161 13 165 8.21e-50 169
Msa0713540 MtrunA17_Chr1g0200561 49.682 157 70 3 6 160 19 168 8.90e-50 169
Msa0713540 MtrunA17_Chr4g0017921 51.266 158 69 2 4 160 6 156 9.08e-50 169
Msa0713540 MtrunA17_Chr5g0405211 50.314 159 66 4 6 160 8 157 9.93e-50 169
Msa0713540 MtrunA17_Chr5g0398971 47.500 160 75 3 4 160 5 158 1.05e-49 169
Msa0713540 MtrunA17_Chr2g0318101 48.824 170 66 5 5 160 14 176 1.09e-49 169
Msa0713540 MtrunA17_Chr1g0197361 52.564 156 64 3 8 160 10 158 1.20e-49 174
Msa0713540 MtrunA17_Chr4g0060931 44.560 193 84 4 6 193 17 191 1.62e-49 169
Msa0713540 MtrunA17_Chr2g0316971 50.898 167 70 3 4 165 21 180 2.39e-49 169
Msa0713540 MtrunA17_Chr8g0372121 50.303 165 69 5 1 161 1 156 2.45e-49 167
Msa0713540 MtrunA17_Chr3g0091921 46.237 186 84 4 6 184 16 192 1.07e-48 165
Msa0713540 MtrunA17_Chr8g0364791 45.405 185 91 2 1 182 1 178 2.46e-48 168
Msa0713540 MtrunA17_Chr1g0197351 54.167 168 59 3 4 161 40 199 2.49e-48 169
Msa0713540 MtrunA17_Chr4g0076731 50.649 154 67 3 8 160 56 201 2.75e-48 167
Msa0713540 MtrunA17_Chr4g0042561 40.426 235 107 6 2 215 5 227 2.77e-48 163
Msa0713540 MtrunA17_Chr4g0047841 54.348 138 56 2 6 143 15 145 2.88e-48 165
Msa0713540 MtrunA17_Chr6g0453131 47.904 167 67 4 6 160 15 173 3.81e-48 166
Msa0713540 MtrunA17_Chr3g0130101 46.857 175 83 3 8 179 9 176 4.24e-48 165
Msa0713540 MtrunA17_Chr3g0124761 52.174 161 61 5 6 160 7 157 4.58e-48 163
Msa0713540 MtrunA17_Chr6g0484441 49.045 157 70 3 5 160 4 151 7.71e-48 164
Msa0713540 MtrunA17_Chr3g0092671 50.318 157 68 3 8 161 7 156 1.15e-47 168
Msa0713540 MtrunA17_Chr8g0346001 44.211 190 80 5 2 174 11 191 2.78e-47 165
Msa0713540 MtrunA17_Chr6g0453451 50.625 160 65 3 6 160 20 170 3.58e-47 162
Msa0713540 MtrunA17_Chr5g0417791 39.914 233 109 5 6 216 3 226 7.48e-47 159
Msa0713540 MtrunA17_Chr1g0147421 46.857 175 84 5 5 177 26 193 3.40e-46 160
Msa0713540 MtrunA17_Chr8g0361731 46.108 167 67 4 8 160 16 173 4.54e-46 160
Msa0713540 MtrunA17_Chr3g0139331 45.946 185 84 5 5 188 10 179 4.61e-46 159
Msa0713540 MtrunA17_Chr7g0214071 44.809 183 89 4 2 182 11 183 5.90e-46 157
Msa0713540 MtrunA17_Chr1g0183741 48.795 166 77 4 3 168 7 164 7.10e-46 157
Msa0713540 MtrunA17_Chr8g0384201 43.784 185 94 3 1 182 1 178 1.49e-45 161
Msa0713540 MtrunA17_Chr5g0417001 47.024 168 67 5 6 160 14 172 1.58e-45 159
Msa0713540 MtrunA17_Chr7g0263931 39.344 244 117 9 6 241 11 231 6.24e-45 156
Msa0713540 MtrunA17_Chr7g0261411 51.613 155 67 4 3 157 7 153 1.08e-44 154
Msa0713540 MtrunA17_Chr7g0253011 50.676 148 60 3 6 153 17 151 1.22e-44 157
Msa0713540 MtrunA17_Chr2g0326361 46.061 165 71 4 5 160 13 168 1.32e-44 155
Msa0713540 MtrunA17_Chr6g0461661 52.206 136 58 2 6 141 18 146 3.20e-44 155
Msa0713540 MtrunA17_Chr4g0038751 39.048 210 120 3 8 217 17 218 1.95e-42 149
Msa0713540 MtrunA17_Chr3g0144271 54.745 137 54 3 6 141 23 152 9.52e-42 150
Msa0713540 MtrunA17_Chr2g0312321 46.429 168 75 4 1 164 6 162 2.17e-41 146
Msa0713540 MtrunA17_Chr8g0345671 48.701 154 70 4 6 158 11 156 2.28e-41 148
Msa0713540 MtrunA17_Chr7g0217711 51.515 132 55 2 9 140 22 144 9.35e-41 140
Msa0713540 MtrunA17_Chr7g0217721 52.273 132 54 2 9 140 22 144 1.10e-40 145
Msa0713540 MtrunA17_Chr2g0311661 42.262 168 79 3 8 161 23 186 2.34e-40 143
Msa0713540 MtrunA17_Chr5g0442771 42.262 168 73 4 8 160 20 178 1.02e-39 142
Msa0713540 MtrunA17_Chr2g0311651 42.857 175 81 6 2 161 17 187 1.21e-39 142
Msa0713540 MtrunA17_Chr2g0321741 44.444 162 66 4 26 187 12 149 4.52e-38 139
Msa0713540 MtrunA17_Chr8g0385991 43.293 164 76 4 2 157 10 164 3.08e-37 133
Msa0713540 MtrunA17_Chr8g0345691 44.156 154 77 4 6 158 12 157 8.88e-37 137
Msa0713540 MtrunA17_Chr8g0345711 44.099 161 78 5 6 162 12 164 4.11e-35 125
Msa0713540 MtrunA17_Chr3g0131911 42.373 177 85 5 2 169 10 178 1.20e-34 127
Msa0713540 MtrunA17_Chr2g0321631 44.172 163 71 6 7 157 5 159 2.42e-34 126
Msa0713540 MtrunA17_Chr7g0266701 42.690 171 78 7 5 162 3 166 3.44e-34 126
Msa0713540 MtrunA17_Chr4g0026141 42.236 161 78 5 6 157 5 159 1.72e-32 121
Msa0713540 MtrunA17_Chr8g0345731 40.000 155 85 3 6 157 24 173 9.05e-32 117
Msa0713540 MtrunA17_Chr3g0113001 50.943 106 39 2 61 160 18 116 2.83e-30 116
Msa0713540 MtrunA17_Chr4g0050701 35.838 173 87 4 6 169 11 168 5.85e-29 110
Msa0713540 MtrunA17_Chr8g0345701 41.060 151 66 5 4 139 5 147 2.99e-26 102
Msa0713540 MtrunA17_Chr8g0345721 37.278 169 65 5 5 138 29 191 1.14e-25 102
Msa0713540 MtrunA17_Chr8g0345741 40.323 124 67 3 17 139 2 119 7.46e-25 98.6
Msa0713540 MtrunA17_Chr3g0113031 48.454 97 36 2 71 160 3 92 3.15e-23 97.1
Msa0713540 MtrunA17_Chr7g0243371 44.444 90 45 1 56 145 12 96 7.89e-21 86.7
Msa0713540 MtrunA17_Chr8g0384351 31.527 203 104 9 1 200 2 172 8.22e-18 80.1
Msa0713540 MtrunA17_Chr7g0251651 28.902 173 98 6 3 164 15 173 6.90e-14 69.3
Msa0713540 MtrunA17_Chr3g0130321 27.778 180 102 4 4 169 5 170 1.71e-13 68.6
Msa0713540 MtrunA17_Chr4g0040541 30.357 168 91 8 6 157 48 205 2.67e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713540 AT4G17980.2 52.632 323 108 10 1 315 1 286 4.52e-98 292
Msa0713540 AT4G17980.1 57.778 270 79 7 1 264 1 241 4.82e-97 288
Msa0713540 AT5G46590.1 54.982 271 92 7 1 266 1 246 6.00e-93 279
Msa0713540 AT1G32510.1 65.534 206 62 4 1 202 1 201 1.39e-86 262
Msa0713540 AT5G46590.2 53.731 268 89 7 1 266 1 235 1.87e-86 262
Msa0713540 AT1G65910.1 64.162 173 52 2 1 170 1 166 2.59e-71 233
Msa0713540 AT5G17260.1 46.809 282 119 7 1 267 1 266 2.77e-70 226
Msa0713540 AT1G54330.1 65.217 161 49 1 1 161 1 154 1.89e-69 219
Msa0713540 AT3G17730.1 63.030 165 49 3 1 161 1 157 4.52e-69 216
Msa0713540 AT3G03200.1 65.244 164 46 3 1 160 1 157 1.05e-68 223
Msa0713540 AT1G33060.1 52.761 163 67 2 1 160 19 174 2.16e-54 188
Msa0713540 AT3G10500.1 54.037 161 64 2 4 161 7 160 2.32e-54 186
Msa0713540 AT1G33060.2 52.761 163 67 2 1 160 19 174 2.40e-54 188
Msa0713540 AT4G35580.1 55.346 159 61 3 5 160 8 159 1.01e-53 184
Msa0713540 AT4G35580.3 55.346 159 61 3 5 160 8 159 1.10e-53 184
Msa0713540 AT4G35580.2 55.346 159 61 3 5 160 8 159 1.20e-53 184
Msa0713540 AT3G49530.2 51.553 161 69 2 5 162 12 166 1.48e-53 181
Msa0713540 AT3G49530.1 51.553 161 69 2 5 162 12 166 3.40e-53 182
Msa0713540 AT5G04410.1 54.088 159 63 2 5 160 8 159 9.30e-53 182
Msa0713540 AT5G22290.1 51.176 170 71 4 1 170 16 173 1.55e-52 177
Msa0713540 AT5G24590.2 50.595 168 74 2 1 165 8 169 1.92e-52 179
Msa0713540 AT1G71930.2 49.686 159 71 3 4 160 7 158 2.43e-51 173
Msa0713540 AT1G71930.1 49.686 159 71 3 4 160 7 158 2.43e-51 173
Msa0713540 AT1G79580.3 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0713540 AT1G79580.5 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0713540 AT1G79580.4 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0713540 AT1G79580.2 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0713540 AT1G79580.1 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0713540 AT3G10490.1 51.534 163 68 2 3 161 24 179 4.09e-51 170
Msa0713540 AT3G10480.1 52.727 165 67 3 1 161 22 179 4.65e-51 176
Msa0713540 AT4G36160.2 53.165 158 65 4 5 160 13 163 5.79e-51 174
Msa0713540 AT4G36160.1 53.165 158 65 4 5 160 9 159 6.11e-51 173
Msa0713540 AT4G36160.3 53.165 158 65 4 5 160 9 159 6.11e-51 173
Msa0713540 AT4G27410.2 53.459 159 62 4 5 160 13 162 9.31e-51 171
Msa0713540 AT2G18060.3 50.617 162 71 4 1 160 4 158 1.08e-50 172
Msa0713540 AT2G18060.1 50.617 162 71 4 1 160 4 158 1.08e-50 172
Msa0713540 AT3G10480.2 51.829 164 69 2 1 161 22 178 1.59e-50 174
Msa0713540 AT3G44290.2 53.548 155 60 3 8 162 16 158 1.62e-50 168
Msa0713540 AT1G12260.2 49.686 159 71 3 4 160 5 156 1.84e-50 171
Msa0713540 AT1G12260.1 49.686 159 71 3 4 160 5 156 1.87e-50 172
Msa0713540 AT4G10350.1 42.616 237 104 8 1 220 1 222 2.54e-50 171
Msa0713540 AT5G64060.1 48.171 164 75 2 1 161 1 157 2.65e-50 171
Msa0713540 AT5G07680.2 49.143 175 67 4 6 175 3 160 2.85e-50 170
Msa0713540 AT5G07680.1 49.143 175 67 4 6 175 17 174 3.75e-50 170
Msa0713540 AT2G02450.2 51.948 154 65 3 8 160 53 198 7.84e-50 171
Msa0713540 AT1G52890.1 52.727 165 62 5 5 164 13 166 7.99e-50 169
Msa0713540 AT3G04070.2 50.877 171 70 5 4 164 8 174 9.07e-50 169
Msa0713540 AT2G02450.1 51.948 154 65 3 8 160 53 198 9.94e-50 170
Msa0713540 AT3G44290.1 53.548 155 60 3 8 162 16 158 1.04e-49 169
Msa0713540 AT3G10490.2 51.534 163 68 2 3 161 24 179 1.13e-49 172
Msa0713540 AT3G15500.1 52.727 165 62 5 5 164 13 166 1.60e-49 168
Msa0713540 AT2G24430.2 51.250 160 69 3 5 162 15 167 2.19e-49 167
Msa0713540 AT2G24430.1 51.250 160 69 3 5 162 15 167 2.19e-49 167
Msa0713540 AT2G27300.1 51.572 159 65 3 1 159 9 155 2.58e-49 168
Msa0713540 AT5G09330.5 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0713540 AT5G09330.2 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0713540 AT5G09330.4 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0713540 AT5G09330.3 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0713540 AT5G09330.1 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0713540 AT1G62700.1 47.853 163 76 3 4 164 5 160 1.19e-48 168
Msa0713540 AT1G62700.2 47.853 163 76 3 4 164 5 160 1.19e-48 168
Msa0713540 AT5G61430.1 48.000 175 69 4 6 175 16 173 1.56e-48 166
Msa0713540 AT5G39610.1 51.250 160 64 3 6 160 20 170 2.01e-48 164
Msa0713540 AT1G61110.1 46.857 175 70 4 2 161 12 178 2.22e-48 165
Msa0713540 AT1G69490.1 46.591 176 75 4 4 169 7 173 3.76e-48 163
Msa0713540 AT3G04070.1 56.115 139 57 3 4 142 8 142 4.28e-48 166
Msa0713540 AT3G29035.1 54.088 159 54 4 6 162 24 165 4.98e-48 164
Msa0713540 AT5G66300.1 49.383 162 68 5 5 161 11 163 6.26e-48 163
Msa0713540 AT1G33280.1 48.734 158 73 2 4 160 6 156 7.11e-48 163
Msa0713540 AT1G34190.1 50.307 163 71 2 2 161 12 167 7.35e-48 169
Msa0713540 AT3G18400.1 48.780 164 69 4 5 164 4 156 8.06e-48 164
Msa0713540 AT4G27410.3 50.000 174 62 5 5 160 13 179 8.59e-48 164
Msa0713540 AT3G15170.1 50.932 161 67 3 6 161 20 173 8.63e-48 163
Msa0713540 AT1G32770.1 46.286 175 69 5 2 160 12 177 1.13e-47 164
Msa0713540 AT5G08790.1 49.697 165 65 3 5 161 6 160 2.77e-47 161
Msa0713540 AT1G01720.1 55.474 137 51 3 6 142 7 133 5.83e-47 160
Msa0713540 AT3G04060.1 49.080 163 70 3 4 161 18 172 7.67e-47 162
Msa0713540 AT3G61910.1 43.017 179 74 4 2 161 7 176 1.38e-46 161
Msa0713540 AT5G62380.2 47.170 159 75 3 4 160 5 156 1.44e-46 161
Msa0713540 AT5G62380.1 47.170 159 75 3 4 160 5 156 1.44e-46 161
Msa0713540 AT2G43000.1 50.000 158 64 4 8 160 20 167 1.47e-46 159
Msa0713540 AT3G10480.3 43.939 198 67 3 1 161 22 212 4.98e-46 164
Msa0713540 AT1G34180.3 50.641 156 67 3 8 160 18 166 6.27e-46 162
Msa0713540 AT2G46770.1 50.345 145 60 3 2 143 12 147 7.43e-46 160
Msa0713540 AT5G18270.2 49.080 163 70 3 4 161 19 173 9.04e-46 159
Msa0713540 AT5G18270.1 46.471 170 78 3 4 168 19 180 1.74e-45 158
Msa0713540 AT1G77450.1 42.534 221 99 9 3 215 5 205 1.80e-45 155
Msa0713540 AT5G53950.1 49.697 165 71 3 6 165 17 174 2.03e-45 159
Msa0713540 AT1G34180.1 50.000 156 68 2 8 160 18 166 3.65e-45 162
Msa0713540 AT2G33480.1 48.521 169 72 3 2 167 11 167 5.64e-45 155
Msa0713540 AT5G63790.1 49.390 164 65 4 5 160 49 202 6.07e-45 156
Msa0713540 AT5G63790.2 49.390 164 65 4 5 160 59 212 6.42e-45 156
Msa0713540 AT2G17040.1 40.553 217 109 5 1 205 1 209 8.09e-45 154
Msa0713540 AT5G39820.1 37.118 229 110 4 8 212 22 240 2.88e-44 155
Msa0713540 AT3G15510.1 44.970 169 72 4 10 164 21 182 3.12e-44 155
Msa0713540 AT1G26870.1 47.337 169 66 4 6 160 16 175 3.25e-44 157
Msa0713540 AT1G76420.1 50.955 157 68 3 6 160 22 171 4.18e-44 154
Msa0713540 AT1G32870.1 52.469 162 63 3 4 160 8 160 1.02e-43 157
Msa0713540 AT1G32870.2 52.469 162 63 3 4 160 8 160 1.04e-43 157
Msa0713540 AT1G52880.1 47.239 163 70 4 10 161 21 178 1.05e-43 153
Msa0713540 AT2G33480.2 47.904 167 74 3 2 167 11 165 1.10e-43 151
Msa0713540 AT1G32870.3 52.469 162 63 3 4 160 44 196 2.69e-43 157
Msa0713540 AT1G34180.4 41.063 207 100 4 2 193 12 211 7.25e-43 154
Msa0713540 AT5G13180.1 46.988 166 76 3 2 165 10 165 2.57e-42 147
Msa0713540 AT1G34180.2 47.024 168 67 4 8 160 18 178 4.38e-42 154
Msa0713540 AT3G12977.1 44.118 170 82 3 1 166 13 173 8.42e-41 144
Msa0713540 AT4G28530.1 45.714 175 69 6 3 160 7 172 8.91e-40 143
Msa0713540 AT1G56010.2 44.643 168 77 5 1 161 14 172 3.43e-39 141
Msa0713540 AT3G12910.1 42.708 192 79 8 8 176 23 206 7.21e-38 137
Msa0713540 AT5G04395.1 46.053 152 65 3 5 143 27 174 3.05e-35 127
Msa0713540 AT5G61430.2 48.333 120 42 3 61 175 6 110 1.23e-30 117
Msa0713540 AT5G22380.1 40.881 159 77 6 9 157 8 159 1.13e-29 114
Msa0713540 AT4G10350.2 41.520 171 72 6 63 220 20 175 3.04e-29 114
Msa0713540 AT3G44350.2 34.123 211 121 7 3 205 2 202 2.63e-28 110
Msa0713540 AT4G01550.1 35.938 192 112 4 9 199 7 188 8.26e-28 113
Msa0713540 AT4G01520.1 34.884 215 124 7 7 213 5 211 7.78e-27 107
Msa0713540 AT3G12977.2 49.074 108 44 2 63 166 20 120 1.45e-26 105
Msa0713540 AT3G04420.2 36.709 158 89 4 7 162 4 152 1.67e-26 107
Msa0713540 AT3G04420.1 36.709 158 89 4 7 162 4 152 1.97e-26 107
Msa0713540 AT3G44350.1 39.456 147 78 5 3 145 2 141 4.51e-26 102
Msa0713540 AT1G56010.1 49.541 109 40 3 63 164 8 108 2.23e-25 103
Msa0713540 AT4G28530.2 46.491 114 41 3 3 99 7 117 3.62e-25 103
Msa0713540 AT1G02230.1 35.057 174 97 7 7 175 4 166 1.71e-24 102
Msa0713540 AT4G01540.3 37.267 161 93 4 9 167 7 161 1.75e-24 103
Msa0713540 AT4G01540.4 37.267 161 93 4 9 167 7 161 1.89e-24 102
Msa0713540 AT5G64530.1 35.025 197 108 5 4 200 1 177 1.94e-24 98.6
Msa0713540 AT2G33480.3 47.222 108 47 2 63 167 10 110 2.95e-24 99.0
Msa0713540 AT1G02250.1 34.804 204 109 8 7 197 4 196 3.33e-24 102
Msa0713540 AT4G01540.2 37.267 161 93 4 9 167 7 161 5.07e-24 102
Msa0713540 AT4G01540.1 37.267 161 93 4 9 167 7 161 5.31e-24 102
Msa0713540 AT5G64530.2 39.855 138 64 4 5 142 2 120 6.89e-24 96.3
Msa0713540 AT1G02220.1 35.766 137 70 4 7 138 4 127 2.20e-21 94.4
Msa0713540 AT1G01010.1 34.783 161 96 6 9 165 6 161 9.11e-21 92.8
Msa0713540 AT3G10490.4 50.588 85 31 2 81 161 2 79 3.41e-18 84.7
Msa0713540 AT3G10490.3 50.588 85 31 2 81 161 2 79 3.41e-18 84.7
Msa0713540 AT5G14000.1 30.556 180 108 4 2 179 11 175 6.84e-18 81.3
Msa0713540 AT3G55210.1 31.515 165 91 5 6 157 11 166 6.12e-17 80.1
Msa0713540 AT5G14000.2 33.333 141 81 3 2 140 11 140 7.01e-17 77.4
Msa0713540 AT3G56530.1 29.487 156 99 4 5 157 51 198 1.59e-16 79.3
Msa0713540 AT2G43000.2 42.708 96 42 3 70 160 2 89 1.95e-16 77.0
Msa0713540 AT5G50820.1 30.198 202 108 8 1 191 10 189 4.55e-16 75.9
Msa0713540 AT2G18060.2 48.684 76 31 3 86 160 2 70 1.41e-14 73.2
Msa0713540 AT5G22290.2 42.857 84 37 3 87 170 2 74 9.28e-13 67.4
Msa0713540 AT1G28470.1 33.775 151 76 8 5 140 76 217 2.46e-11 64.3

Find 205 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGCCGGTCACAATTTA+AGG 0.122169 5_1:-5717462 Msa0713540:three_prime_UTR
ATTCTTATAACCTTTGTATA+TGG 0.174550 5_1:-5717133 Msa0713540:three_prime_UTR
TTATAGATTTCATCCGAATT+TGG 0.216728 5_1:-5718535 Msa0713540:three_prime_UTR
AAGTGAAACTGAAAATATTT+TGG 0.218909 5_1:+5720989 None:intergenic
GAGACGAGGTTGAGACTTTA+TGG 0.233252 5_1:-5717838 Msa0713540:three_prime_UTR
TCTCAACCTCGTCTCTTCTT+AGG 0.247691 5_1:+5717846 Msa0713530:CDS
ACTCAAAGACAGACATTAAA+AGG 0.255543 5_1:+5718689 None:intergenic
ACCATTCACCACTTTCTCTT+TGG 0.260036 5_1:-5721341 Msa0713540:five_prime_UTR
CTATTTGTCCTTGAACCATT+TGG 0.260232 5_1:+5720018 None:intergenic
TGTGGAAACAGTTGCAAAAT+TGG 0.260709 5_1:+5718139 Msa0713530:CDS
ACTCTTCTGCATTGCTTGAT+TGG 0.276649 5_1:+5717982 Msa0713530:CDS
GGTTGCATGTCACCTTATTC+AGG 0.278280 5_1:-5718941 Msa0713540:CDS
CAAAAGTGAAGGCTTTAAAA+AGG 0.279028 5_1:+5721300 None:intergenic
CCTGACACTCCTAGCCAAAT+TGG 0.283562 5_1:-5718962 Msa0713540:CDS
CAAAGGTTATAAGAATGTTT+TGG 0.284044 5_1:+5717140 Msa0713530:CDS
CTCGTTCCCATTGGTTGAAA+TGG 0.287030 5_1:+5719585 None:intergenic
ATGATCAGATTCATTCATTC+AGG 0.291099 5_1:-5718883 Msa0713540:CDS
AGATGATCGGAGAGTATTTC+GGG 0.298853 5_1:-5717786 Msa0713540:three_prime_UTR
AAACTTCCTTGTCCTGAATA+AGG 0.309664 5_1:+5718929 None:intergenic
TATTTGTCCTTGAACCATTT+GGG 0.317092 5_1:+5720019 None:intergenic
ACATTGCATTGGAAGTTAAT+AGG 0.319093 5_1:+5719508 None:intergenic
TGCATGGTTGTGTTTGTGTT+TGG 0.345549 5_1:-5717871 Msa0713540:three_prime_UTR
GTTGGGAGCCAAGGCATTCT+AGG 0.347134 5_1:+5717293 Msa0713530:CDS
GGCTTTCCAGTAGCCAGCTT+TGG 0.349829 5_1:+5719990 None:intergenic
AAGATGATCGGAGAGTATTT+CGG 0.350796 5_1:-5717787 Msa0713540:three_prime_UTR
CTGTTTGAGATCAGAAATTC+AGG 0.351569 5_1:+5717402 Msa0713530:CDS
AATTCTACAAATTTGATCCT+TGG 0.356563 5_1:-5720791 Msa0713540:CDS
GTGTGTAATATTCCTAAGTT+TGG 0.358091 5_1:-5721216 Msa0713540:five_prime_UTR
TTCAGGACAAGGAAGTTTCA+TGG 0.359502 5_1:-5718924 Msa0713540:CDS
CATCCGAATTTGGTTTATAT+CGG 0.360065 5_1:-5718525 Msa0713540:three_prime_UTR
CCAGGCGTTGCATGCAAGTT+GGG 0.364061 5_1:+5717276 Msa0713530:intron
TTCTTATAACCTTTGTATAT+GGG 0.365139 5_1:-5717132 Msa0713540:three_prime_UTR
ATTCTACAAATTTGATCCTT+GGG 0.375015 5_1:-5720790 Msa0713540:CDS
CAACCACGGTGTAGCCGAAT+TGG 0.384589 5_1:-5717369 Msa0713540:three_prime_UTR
GTCTGATGCGTAGGCACAAT+TGG 0.387107 5_1:+5717510 Msa0713530:intron
ATTATGTTGTGTAGGTTTCC+CGG 0.391471 5_1:-5718570 Msa0713540:three_prime_UTR
CCTCTTTCCTCCTTGTCCTT+CGG 0.394344 5_1:+5719633 None:intergenic
AAGGTGACATGCAACCAATT+TGG 0.396046 5_1:+5718948 None:intergenic
ATTGAGGAAGTTGAAGAACT+TGG 0.400564 5_1:+5718170 Msa0713530:CDS
CCCAACTTGCATGCAACGCC+TGG 0.403538 5_1:-5717276 Msa0713540:intron
TAATGAATATATGTTATAAC+AGG 0.408990 5_1:-5717626 Msa0713540:three_prime_UTR
ATACCAATCCTACAACCTTC+TGG 0.410453 5_1:-5719450 Msa0713540:CDS
TGACCGATATAAACCAAATT+CGG 0.415532 5_1:+5718522 None:intergenic
TCTGAAAACAAAGAAGGAAT+AGG 0.417637 5_1:-5718847 Msa0713540:exon
CTTTAGGTGATCGAACCAAT+TGG 0.418283 5_1:-5719864 Msa0713540:CDS
CCAATTTGGCTAGGAGTGTC+AGG 0.418438 5_1:+5718962 None:intergenic
AATTTGTAGAATTCAATAAC+AGG 0.424548 5_1:+5720801 None:intergenic
GAGCCACCAAAGCTGGCTAC+TGG 0.428919 5_1:-5719996 Msa0713540:CDS
TACTGTGGAAGAGCTCCTTT+AGG 0.431670 5_1:-5719880 Msa0713540:CDS
TGGGAACGAGGTTTCTTGTC+AGG 0.433403 5_1:-5719572 Msa0713540:CDS
ATTCATCAAATAAAAGACTA+AGG 0.436824 5_1:-5718330 Msa0713540:three_prime_UTR
TCTATAAAAGTGATATCATC+CGG 0.438124 5_1:+5718551 None:intergenic
CAAGATTTGATCTCGGAGTT+CGG 0.438171 5_1:-5717533 Msa0713540:three_prime_UTR
TAGTTTCTGTCTAGTGCAAA+TGG 0.441303 5_1:+5718635 None:intergenic
TGCAATGTCCCTCCTATGGC+TGG 0.442131 5_1:-5719493 Msa0713540:CDS
GCGACAGTTTCTTATGCTGT+TGG 0.449688 5_1:-5717754 Msa0713540:three_prime_UTR
ACTAACCAGTGTTTCATCAA+TGG 0.450544 5_1:-5717172 Msa0713540:intron
GCAAATAGTGCCTACGTATC+CGG 0.451186 5_1:-5717569 Msa0713540:three_prime_UTR
CCGAAGGACAAGGAGGAAAG+AGG 0.451346 5_1:-5719633 Msa0713540:CDS
CGGAACAATTTGCCTTCTCA+TGG 0.454690 5_1:+5718272 Msa0713530:CDS
TGGGAGAGCCAGAAGGTTGT+AGG 0.455808 5_1:+5719442 None:intergenic
ACAAATAGAGCCACCAAAGC+TGG 0.456357 5_1:-5720003 Msa0713540:CDS
AAAATTGGATCTTGTTATTG+AGG 0.463462 5_1:+5718154 Msa0713530:CDS
ACAAGCCGGTCACAATTTAA+GGG 0.465753 5_1:-5717461 Msa0713540:three_prime_UTR
TCATCTTCATGAAGCTCTAC+AGG 0.467841 5_1:+5717803 Msa0713530:CDS
GGAGCTGTTCTTCGCCAATT+CGG 0.468447 5_1:+5717355 Msa0713530:CDS
AACATGGCTCTAACTGATCT+TGG 0.468885 5_1:-5717675 Msa0713540:three_prime_UTR
TTTAGGTGATCGAACCAATT+GGG 0.469718 5_1:-5719863 Msa0713540:CDS
ATATTCATGCATGACCCAAT+TGG 0.471797 5_1:+5719849 None:intergenic
TTGAGGAAGTTGAAGAACTT+GGG 0.474676 5_1:+5718171 Msa0713530:CDS
AGGAACATAGAAATATAGAA+TGG 0.474922 5_1:-5720934 Msa0713540:exon
AGTTAAACAAAAGATGTGAA+TGG 0.475321 5_1:-5718754 Msa0713540:three_prime_UTR
TCAGATGATTTGATATCTCC+AGG 0.475473 5_1:-5717105 Msa0713540:three_prime_UTR
CCAACCGATGAAGAGTTGAT+AGG 0.477569 5_1:-5720876 Msa0713540:CDS
TTTCCAGTAGCCAGCTTTGG+TGG 0.478466 5_1:+5719993 None:intergenic
GGGCAATTACAAGATGTTGT+TGG 0.478523 5_1:-5719100 Msa0713540:CDS
AAAGATGCAAAAGCAGCAAA+AGG 0.479326 5_1:-5718113 Msa0713540:three_prime_UTR
TGCTTTAAAGAGTTTAGAGC+TGG 0.480144 5_1:+5718203 Msa0713530:CDS
TACACCGTGGTTGCTCTACA+TGG 0.480998 5_1:+5717379 Msa0713530:CDS
GCAATTCCATTTCAACCAAT+GGG 0.481299 5_1:-5719591 Msa0713540:CDS
TGTTCAAGGATCCATGCATA+AGG 0.481436 5_1:+5717694 Msa0713530:CDS
AAGAGGGTTAGAGCTAATGA+TGG 0.484892 5_1:-5719616 Msa0713540:CDS
ACAATGATTCTGGAGCATAA+TGG 0.486626 5_1:-5721132 Msa0713540:five_prime_UTR
ATCAGTTAGAGCCATGTTCA+AGG 0.486726 5_1:+5717680 Msa0713530:CDS
AGCAATTCCATTTCAACCAA+TGG 0.488117 5_1:-5719592 Msa0713540:CDS
GGTAGACATGGAAAAGGCTC+TGG 0.488167 5_1:+5717933 Msa0713530:CDS
CATGATTCTTGATTCTTCAA+AGG 0.488637 5_1:-5719416 Msa0713540:intron
TTAATCCCTTAAATTGTGAC+CGG 0.488804 5_1:+5717456 Msa0713530:intron
GGAGGAGCTTCACTGCCTCC+AGG 0.489497 5_1:-5720912 Msa0713540:CDS
GCCAGGCGTTGCATGCAAGT+TGG 0.489802 5_1:+5717275 Msa0713530:intron
AAAATAAACCAAAGAGAAAG+TGG 0.490273 5_1:+5721333 None:intergenic
TGCATGCAAGTTGGGAGCCA+AGG 0.493195 5_1:+5717284 Msa0713530:CDS
CCAATGCAATGTCCCTCCTA+TGG 0.494392 5_1:-5719497 Msa0713540:CDS
ATGGATAGGTATAGTACTCT+TGG 0.500590 5_1:-5721027 Msa0713540:five_prime_UTR
GGTTGTAGGATTGGTATCAG+AGG 0.501312 5_1:+5719456 None:intergenic
GAGCCAGAAGGTTGTAGGAT+TGG 0.503637 5_1:+5719447 None:intergenic
ATCTGATCATAGCATTCATA+AGG 0.503854 5_1:+5718896 None:intergenic
CCTATCAACTCTTCATCGGT+TGG 0.504532 5_1:+5720876 None:intergenic
GTTTGAGCATGTTGTTTGCA+TGG 0.505188 5_1:-5717887 Msa0713540:three_prime_UTR
TGTAATTTATTATGTTGTGT+AGG 0.505587 5_1:-5718578 Msa0713540:three_prime_UTR
ATCAATTCTGAAAACAAAGA+AGG 0.507825 5_1:-5718853 Msa0713540:exon
GGAACATAGAAATATAGAAT+GGG 0.513465 5_1:-5720933 Msa0713540:exon
TGGCAGCAATATGTAAAAGT+TGG 0.518460 5_1:+5717334 Msa0713530:CDS
GTCTATTCAATTCCATGAGA+AGG 0.518933 5_1:-5718284 Msa0713540:three_prime_UTR
TCAACTCTTCATCGGTTGGA+TGG 0.522689 5_1:+5720880 None:intergenic
CGGGATCGCAAGTACCCAAA+TGG 0.524999 5_1:-5720033 Msa0713540:CDS
ATGCATAAGGGTTGCAGCAG+AGG 0.527389 5_1:+5717707 Msa0713530:CDS
ATTTCCACTGAGACTGTCAC+AGG 0.530687 5_1:-5719925 Msa0713540:CDS
ACAAGAAACCTCGTTCCCAT+TGG 0.531913 5_1:+5719576 None:intergenic
AGACATTTACCTCCGAGCCT+TGG 0.532346 5_1:+5719806 None:intergenic
TATGGAGAAATTGATAGCCC+TGG 0.532775 5_1:+5717087 Msa0713530:CDS
GCAAGTACCCAAATGGTTCA+AGG 0.532989 5_1:-5720026 Msa0713540:CDS
AAGAATCAAGAATCATGTCA+TGG 0.536644 5_1:+5719422 None:intergenic
AAGTTACAAGATGTTTCAGT+GGG 0.536724 5_1:-5718795 Msa0713540:three_prime_UTR
CACTCTGCAGTCTGATGCGT+AGG 0.538972 5_1:+5717501 Msa0713530:intron
TGTCTTGATTTAGATTTACA+AGG 0.540561 5_1:-5717022 Msa0713540:three_prime_UTR
CCATAGGAGGGACATTGCAT+TGG 0.543388 5_1:+5719497 None:intergenic
AATAGCTTATATAATGGATG+AGG 0.543955 5_1:-5718478 Msa0713540:three_prime_UTR
GTTCAAGGATCCATGCATAA+GGG 0.544118 5_1:+5717695 Msa0713530:CDS
AAACTAGCTGCTGCACAAGT+TGG 0.544612 5_1:+5717906 Msa0713530:CDS
GATTGGTATCAGAGGAAGCT+TGG 0.544770 5_1:+5719464 None:intergenic
TGACAGTACCTAGAATGCCT+TGG 0.545491 5_1:-5717301 Msa0713540:three_prime_UTR
TCATGATCAATTTACTCAGT+AGG 0.549130 5_1:+5718438 None:intergenic
GAAACAGTTTGCAAAAGTGA+AGG 0.549134 5_1:+5721289 None:intergenic
AACTAGCAGGACTATTCTCA+AGG 0.550921 5_1:-5719121 Msa0713540:intron
TATATCGGTCATTGTATGTG+TGG 0.552924 5_1:-5718510 Msa0713540:three_prime_UTR
TTTACCTCCGAGCCTTGGCT+AGG 0.552976 5_1:+5719811 None:intergenic
CAAGTTGGTCAAGGTAGACA+TGG 0.553561 5_1:+5717921 Msa0713530:CDS
ACCAAAGAGAAAGTGGTGAA+TGG 0.554609 5_1:+5721340 None:intergenic
GGTCAAGGTAGACATGGAAA+AGG 0.558508 5_1:+5717927 Msa0713530:CDS
TTTGATCCTTGGGAGTTACC+TGG 0.560186 5_1:-5720780 Msa0713540:intron
ATCTTGTGTTCAAACACAGC+CGG 0.561794 5_1:+5717550 Msa0713530:intron
TTGAACACAAGATTTGATCT+CGG 0.564648 5_1:-5717540 Msa0713540:three_prime_UTR
TACGCATCAGACTGCAGAGT+GGG 0.567158 5_1:-5717499 Msa0713540:three_prime_UTR
TTCCGCATTAAAATTTGAGT+AGG 0.567816 5_1:+5718994 None:intergenic
ACTTATTATTAGTACTCAGT+GGG 0.568638 5_1:+5718400 None:intergenic
TTCTGTCTAGTGCAAATGGA+GGG 0.570441 5_1:+5718639 None:intergenic
TTTGGGTACTTGCGATCCCG+TGG 0.573459 5_1:+5720036 None:intergenic
ATATCCTATCAACTCTTCAT+CGG 0.573542 5_1:+5720872 None:intergenic
TTCATCAAATAAAAGACTAA+GGG 0.574168 5_1:-5718329 Msa0713540:three_prime_UTR
CTCGATAACTCATGTTGCTG+TGG 0.576057 5_1:+5719070 None:intergenic
TGGTCAAATCCAGCCATAGG+AGG 0.577334 5_1:+5719484 None:intergenic
TCAGTGGAAATGAATGGACT+AGG 0.578648 5_1:+5719937 None:intergenic
TAGAGCTTCATGAAGATGAT+CGG 0.579444 5_1:-5717799 Msa0713540:three_prime_UTR
CATTTCAACCAATGGGAACG+AGG 0.580432 5_1:-5719584 Msa0713540:CDS
GTTGGATGGAAACGAAAACC+TGG 0.583973 5_1:+5720894 None:intergenic
ACAGTCTCAGTGGAAATGAA+TGG 0.584355 5_1:+5719931 None:intergenic
CAATTGGTTCGATCACCTAA+AGG 0.588285 5_1:+5719865 None:intergenic
TGATGATCCTAGCCAAGGCT+CGG 0.588446 5_1:-5719818 Msa0713540:CDS
GCTTGGTCAAATCCAGCCAT+AGG 0.594904 5_1:+5719481 None:intergenic
AGAATCAAGAATCATGTCAT+GGG 0.595091 5_1:+5719423 None:intergenic
GCTGGCTACTGGAAAGCCAC+AGG 0.598108 5_1:-5719985 Msa0713540:CDS
GGAAAGCCACAGGAAAAGAC+AGG 0.599029 5_1:-5719975 Msa0713540:CDS
TCTGCTGCAACCCTTATGCA+TGG 0.600193 5_1:-5717705 Msa0713540:three_prime_UTR
TGCAGTCGAAGGAAAACGAA+AGG 0.603800 5_1:+5718027 Msa0713530:CDS
AGATTCATTAATGCAGTCGA+AGG 0.607766 5_1:+5718016 Msa0713530:CDS
CTCAATGATGATCCTAGCCA+AGG 0.611417 5_1:-5719823 Msa0713540:CDS
TACTTATTATTAGTACTCAG+TGG 0.611777 5_1:+5718399 None:intergenic
CAAGTTACAAGATGTTTCAG+TGG 0.612949 5_1:-5718796 Msa0713540:three_prime_UTR
CGAAGGACAAGGAGGAAAGA+GGG 0.614265 5_1:-5719632 Msa0713540:CDS
AAATTTGAGTAGGATGAACA+AGG 0.615587 5_1:+5719004 None:intergenic
CTATAAAAGTGATATCATCC+GGG 0.616117 5_1:+5718552 None:intergenic
TATCGAGTACAATCTCAACT+TGG 0.616686 5_1:-5719054 Msa0713540:CDS
GCAAATGATTCCGAAGGACA+AGG 0.617621 5_1:-5719643 Msa0713540:CDS
AGAGTATTTCGGGAGAGCAA+TGG 0.619871 5_1:-5717776 Msa0713540:three_prime_UTR
CATGTCATGGGAGAGCCAGA+AGG 0.622804 5_1:+5719435 None:intergenic
GAGAAGGCAAATGATTCCGA+AGG 0.623623 5_1:-5719649 Msa0713540:CDS
ATGTCACCTTATTCAGGACA+AGG 0.624913 5_1:-5718935 Msa0713540:CDS
GCTGCTGCACAAGTTGGTCA+AGG 0.626016 5_1:+5717912 Msa0713530:CDS
ACATAGAAATATAGAATGGG+AGG 0.627145 5_1:-5720930 Msa0713540:exon
GGTACTGTCACAAATTTCCA+TGG 0.628747 5_1:+5717314 Msa0713530:CDS
AGAGGGTTAGAGCTAATGAT+GGG 0.630099 5_1:-5719615 Msa0713540:CDS
TGAACCTATCTCCACCCCAA+AGG 0.632778 5_1:+5721183 None:intergenic
GGTCAAATCCAGCCATAGGA+GGG 0.633856 5_1:+5719485 None:intergenic
TTTCTGTCTAGTGCAAATGG+AGG 0.640935 5_1:+5718638 None:intergenic
GACATGCAACCAATTTGGCT+AGG 0.642381 5_1:+5718953 None:intergenic
TCTAAATCAAGACATAGTCA+AGG 0.644103 5_1:+5717031 Msa0713530:intron
GACCTACCAGGTAACTCCCA+AGG 0.644578 5_1:+5720774 None:intergenic
CAGATGATTTGATATCTCCA+GGG 0.645408 5_1:-5717104 Msa0713540:three_prime_UTR
TGGAGATATCAAATCATCTG+AGG 0.646682 5_1:+5717107 Msa0713530:CDS
ACAGTCTTAAACTTACAAGC+CGG 0.651144 5_1:-5717475 Msa0713540:three_prime_UTR
CTTGGCTAGGATCATCATTG+AGG 0.653192 5_1:+5719824 None:intergenic
AGAGTTAAATGACACTTCAA+CGG 0.653873 5_1:+5721102 None:intergenic
TCTGAGGATCCCATATACAA+AGG 0.659738 5_1:+5717123 Msa0713530:CDS
TATGCATGGATCCTTGAACA+TGG 0.660343 5_1:-5717691 Msa0713540:three_prime_UTR
ACATACACGGATTTCTGAGA+CGG 0.664223 5_1:-5718714 Msa0713540:three_prime_UTR
ATATGTTATAACAGGAACCC+CGG 0.665430 5_1:-5717618 Msa0713540:three_prime_UTR
CACTAGTCTTGAATTCTCTG+AGG 0.665482 5_1:+5718085 Msa0713530:CDS
CAGGCAAGTCAACTATTGAG+TGG 0.665687 5_1:-5719553 Msa0713540:CDS
ACTAGCAGGACTATTCTCAA+GGG 0.665974 5_1:-5719120 Msa0713540:intron
ATGCAAGAAGACTACATACA+CGG 0.667220 5_1:-5718727 Msa0713540:three_prime_UTR
TTCCGCGACACATCAACTCG+AGG 0.668844 5_1:-5718254 Msa0713540:three_prime_UTR
AACCTCGAGTTGATGTGTCG+CGG 0.672079 5_1:+5718252 Msa0713530:CDS
AGCCACAGGAAAAGACAGGA+AGG 0.673089 5_1:-5719971 Msa0713540:CDS
GTAACCTGTGACAGTCTCAG+TGG 0.678126 5_1:+5719921 None:intergenic
TCAAACACAGCCGGATACGT+AGG 0.678958 5_1:+5717559 Msa0713530:intron
ACAGCCATGTAGAGCAACCA+CGG 0.689758 5_1:-5717383 Msa0713540:three_prime_UTR
TGATCCTAGCCAAGGCTCGG+AGG 0.696143 5_1:-5719815 Msa0713540:intron
TCGCCAATTCGGCTACACCG+TGG 0.698242 5_1:+5717366 Msa0713530:CDS
TTGGAACCTAAGAAGAGACG+AGG 0.710005 5_1:-5717852 Msa0713540:three_prime_UTR
CTACGCATCAGACTGCAGAG+TGG 0.715113 5_1:-5717500 Msa0713540:three_prime_UTR
AATGATTCCGAAGGACAAGG+AGG 0.715890 5_1:-5719640 Msa0713540:CDS
TGATATTGTTGTGACTTGTG+AGG 0.758451 5_1:+5718229 Msa0713530:CDS
GGATGGAAACGAAAACCTGG+AGG 0.767680 5_1:+5720897 None:intergenic
AGTTACAAGATGTTTCAGTG+GGG 0.791907 5_1:-5718794 Msa0713540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGACAAAAGTTTTTATTTT+TGG - chr5_1:5717302-5717321 Msa0713540:three_prime_UTR 15.0%
!!! ATTAACTTTTGAAAACTTTT+AGG - chr5_1:5717780-5717799 Msa0713540:three_prime_UTR 15.0%
!!! TTTCCATTATTTAATTTTGA+GGG + chr5_1:5718060-5718079 Msa0713530:CDS 15.0%
!!! TTTTCCATTATTTAATTTTG+AGG + chr5_1:5718061-5718080 Msa0713530:CDS 15.0%
!! CATAAAAATAGCTTATATAA+TGG - chr5_1:5719880-5719899 Msa0713540:CDS 15.0%
!! TAATGAATATATGTTATAAC+AGG - chr5_1:5720738-5720757 Msa0713540:intron 15.0%
!!! TTTGGTTTATTTTAACTTCT+AGG - chr5_1:5717041-5717060 Msa0713540:three_prime_UTR 20.0%
!!! AAACTGTTTCTTTTTTTTCT+TGG - chr5_1:5717088-5717107 Msa0713540:three_prime_UTR 20.0%
!!! TTGTTTTAATACAATGATTC+TGG - chr5_1:5717222-5717241 Msa0713540:intron 20.0%
!!! TTTTTGGATTTTTCAGATTA+TGG - chr5_1:5717318-5717337 Msa0713540:three_prime_UTR 20.0%
!!! AAGTGAAACTGAAAATATTT+TGG + chr5_1:5717378-5717397 Msa0713530:CDS 20.0%
!!! TTTTGGTTTTAATAGTAGTA+AGG - chr5_1:5717410-5717429 Msa0713540:three_prime_UTR 20.0%
!! AATTTGTAGAATTCAATAAC+AGG + chr5_1:5717566-5717585 Msa0713530:intron 20.0%
!! TAACCCTCAAAATTAAATAA+TGG - chr5_1:5718054-5718073 Msa0713540:three_prime_UTR 20.0%
!!! TAATATGTTTTCTTTAGAGT+TGG - chr5_1:5718168-5718187 Msa0713540:three_prime_UTR 20.0%
!!! AATATGTTTTCTTTAGAGTT+GGG - chr5_1:5718169-5718188 Msa0713540:three_prime_UTR 20.0%
!!! TCTCATTCTTTTTAATAACT+CGG + chr5_1:5718699-5718718 None:intergenic 20.0%
!! AGTTATTAAAAAGAATGAGA+AGG - chr5_1:5718699-5718718 Msa0713540:three_prime_UTR 20.0%
!! TCTAACATAAAGTTAGAATT+TGG - chr5_1:5719018-5719037 Msa0713540:CDS 20.0%
!! TGTAATTTATTATGTTGTGT+AGG - chr5_1:5719786-5719805 Msa0713540:intron 20.0%
!! ATTCATCAAATAAAAGACTA+AGG - chr5_1:5720034-5720053 Msa0713540:CDS 20.0%
!! TTCATCAAATAAAAGACTAA+GGG - chr5_1:5720035-5720054 Msa0713540:CDS 20.0%
!! AATTAAAATTAACCTAGAGA+TGG - chr5_1:5721160-5721179 Msa0713540:five_prime_UTR 20.0%
!! ATTCTTATAACCTTTGTATA+TGG - chr5_1:5721231-5721250 Msa0713540:five_prime_UTR 20.0%
!! TTCTTATAACCTTTGTATAT+GGG - chr5_1:5721232-5721251 Msa0713540:five_prime_UTR 20.0%
!!! TGTGTCAATGAATATTTTTA+TGG + chr5_1:5721298-5721317 None:intergenic 20.0%
! AAAATAAACCAAAGAGAAAG+TGG + chr5_1:5717034-5717053 Msa0713530:intron 25.0%
!!! TTTGGTACATTTTTTCCTTT+GGG - chr5_1:5717166-5717185 Msa0713540:three_prime_UTR 25.0%
!!! CACTTGTGTTTTTTTGTTTT+TGG - chr5_1:5717393-5717412 Msa0713540:three_prime_UTR 25.0%
! AGGAACATAGAAATATAGAA+TGG - chr5_1:5717430-5717449 Msa0713540:three_prime_UTR 25.0%
! GGAACATAGAAATATAGAAT+GGG - chr5_1:5717431-5717450 Msa0713540:three_prime_UTR 25.0%
! TTACCTAAAAAGAAAAGTTG+AGG - chr5_1:5717514-5717533 Msa0713540:three_prime_UTR 25.0%
! TACCTAAAAAGAAAAGTTGA+GGG - chr5_1:5717515-5717534 Msa0713540:three_prime_UTR 25.0%
! AATTCTACAAATTTGATCCT+TGG - chr5_1:5717573-5717592 Msa0713540:three_prime_UTR 25.0%
! ATTCTACAAATTTGATCCTT+GGG - chr5_1:5717574-5717593 Msa0713540:three_prime_UTR 25.0%
! ACACGATTAATCACAAAATT+CGG + chr5_1:5718127-5718146 Msa0713530:CDS 25.0%
! TTTAAGAGAACTCTAATTTG+TGG - chr5_1:5718236-5718255 Msa0713540:three_prime_UTR 25.0%
!! TTAAGAGAACTCTAATTTGT+GGG - chr5_1:5718237-5718256 Msa0713540:three_prime_UTR 25.0%
!!! ATCCTACTCAAATTTTAATG+CGG - chr5_1:5719368-5719387 Msa0713540:intron 25.0%
!!! CTTTGTTTTCAGAATTGATT+TGG + chr5_1:5719510-5719529 None:intergenic 25.0%
!! ATCAATTCTGAAAACAAAGA+AGG - chr5_1:5719511-5719530 Msa0713540:CDS 25.0%
! AGTTAAACAAAAGATGTGAA+TGG - chr5_1:5719610-5719629 Msa0713540:CDS 25.0%
! TCTATAAAAGTGATATCATC+CGG + chr5_1:5719816-5719835 None:intergenic 25.0%
! TTATAGATTTCATCCGAATT+TGG - chr5_1:5719829-5719848 Msa0713540:CDS 25.0%
!!! AATAGCTTATATAATGGATG+AGG - chr5_1:5719886-5719905 Msa0713540:CDS 25.0%
! ACTTATTATTAGTACTCAGT+GGG + chr5_1:5719967-5719986 None:intergenic 25.0%
! TACTTATTATTAGTACTCAG+TGG + chr5_1:5719968-5719987 None:intergenic 25.0%
!!! AAAATTGGATCTTGTTATTG+AGG + chr5_1:5720213-5720232 None:intergenic 25.0%
!!! TATTTGTTTTCTTTTGAACC+GGG + chr5_1:5720767-5720786 None:intergenic 25.0%
!!! GTATTTGTTTTCTTTTGAAC+CGG + chr5_1:5720768-5720787 None:intergenic 25.0%
!! CAAAGGTTATAAGAATGTTT+TGG + chr5_1:5721227-5721246 None:intergenic 25.0%
! TGTCTTGATTTAGATTTACA+AGG - chr5_1:5721342-5721361 Msa0713540:five_prime_UTR 25.0%
!! CAAAAGTGAAGGCTTTAAAA+AGG + chr5_1:5717067-5717086 Msa0713530:CDS 30.0%
GTGTGTAATATTCCTAAGTT+TGG - chr5_1:5717148-5717167 Msa0713540:three_prime_UTR 30.0%
GGAAAAAATGTACCAAACTT+AGG + chr5_1:5717163-5717182 Msa0713530:CDS 30.0%
!!! GTTTGGTACATTTTTTCCTT+TGG - chr5_1:5717165-5717184 Msa0713540:three_prime_UTR 30.0%
!!! TTGGTACATTTTTTCCTTTG+GGG - chr5_1:5717167-5717186 Msa0713540:intron 30.0%
AGAGTTAAATGACACTTCAA+CGG + chr5_1:5717265-5717284 Msa0713530:intron 30.0%
!! GGATTTTTCAGATTATGGAT+AGG - chr5_1:5717323-5717342 Msa0713540:three_prime_UTR 30.0%
ACATAGAAATATAGAATGGG+AGG - chr5_1:5717434-5717453 Msa0713540:three_prime_UTR 30.0%
ATATCCTATCAACTCTTCAT+CGG + chr5_1:5717495-5717514 Msa0713530:intron 30.0%
ACAACAAATAGGAGGATTTA+AGG - chr5_1:5717950-5717969 Msa0713540:three_prime_UTR 30.0%
!!! TTGTTTTGAGCTAACTACTA+AGG - chr5_1:5718210-5718229 Msa0713540:three_prime_UTR 30.0%
! TAAGAGAACTCTAATTTGTG+GGG - chr5_1:5718238-5718257 Msa0713540:three_prime_UTR 30.0%
! AACCATTCCATATCTCTTTT+TGG + chr5_1:5718298-5718317 None:intergenic 30.0%
TATTTGTCCTTGAACCATTT+GGG + chr5_1:5718348-5718367 None:intergenic 30.0%
TCTTCCACAGTAAAAAACTA+GGG + chr5_1:5718476-5718495 None:intergenic 30.0%
TTCTTATTGATCACTGTTGT+AGG - chr5_1:5718657-5718676 Msa0713540:three_prime_UTR 30.0%
TCTTATTGATCACTGTTGTA+GGG - chr5_1:5718658-5718677 Msa0713540:three_prime_UTR 30.0%
ACATTGCATTGGAAGTTAAT+AGG + chr5_1:5718859-5718878 None:intergenic 30.0%
AGAATCAAGAATCATGTCAT+GGG + chr5_1:5718944-5718963 None:intergenic 30.0%
AAGAATCAAGAATCATGTCA+TGG + chr5_1:5718945-5718964 None:intergenic 30.0%
CATGATTCTTGATTCTTCAA+AGG - chr5_1:5718948-5718967 Msa0713540:CDS 30.0%
AACTAATATCTACATGTGTC+TGG + chr5_1:5719191-5719210 None:intergenic 30.0%
AAATTTGAGTAGGATGAACA+AGG + chr5_1:5719363-5719382 None:intergenic 30.0%
TTCCGCATTAAAATTTGAGT+AGG + chr5_1:5719373-5719392 None:intergenic 30.0%
ATCTGATCATAGCATTCATA+AGG + chr5_1:5719471-5719490 None:intergenic 30.0%
ATGATCAGATTCATTCATTC+AGG - chr5_1:5719481-5719500 Msa0713540:CDS 30.0%
TCTGAAAACAAAGAAGGAAT+AGG - chr5_1:5719517-5719536 Msa0713540:CDS 30.0%
AAGTTACAAGATGTTTCAGT+GGG - chr5_1:5719569-5719588 Msa0713540:CDS 30.0%
ACTCAAAGACAGACATTAAA+AGG + chr5_1:5719678-5719697 None:intergenic 30.0%
CTATAAAAGTGATATCATCC+GGG + chr5_1:5719815-5719834 None:intergenic 30.0%
! CATCCGAATTTGGTTTATAT+CGG - chr5_1:5719839-5719858 Msa0713540:CDS 30.0%
TGACCGATATAAACCAAATT+CGG + chr5_1:5719845-5719864 None:intergenic 30.0%
TCATGATCAATTTACTCAGT+AGG + chr5_1:5719929-5719948 None:intergenic 30.0%
! ATAGCAATTTTACTCAACTG+AGG - chr5_1:5720302-5720321 Msa0713540:intron 30.0%
!! ATTTGTTTTCTTTTGAACCG+GGG + chr5_1:5720766-5720785 None:intergenic 30.0%
TTGAACACAAGATTTGATCT+CGG - chr5_1:5720824-5720843 Msa0713540:CDS 30.0%
TTAATCCCTTAAATTGTGAC+CGG + chr5_1:5720911-5720930 None:intergenic 30.0%
TTAATACATTCCTTCGAATG+AGG + chr5_1:5721142-5721161 None:intergenic 30.0%
AAAATCCATTGATGAAACAC+TGG + chr5_1:5721200-5721219 None:intergenic 30.0%
TCTAAATCAAGACATAGTCA+AGG + chr5_1:5721336-5721355 None:intergenic 30.0%
GAAACAGTTTGCAAAAGTGA+AGG + chr5_1:5717078-5717097 Msa0713530:CDS 35.0%
!! ACAATGATTCTGGAGCATAA+TGG - chr5_1:5717232-5717251 Msa0713540:intron 35.0%
ATGGATAGGTATAGTACTCT+TGG - chr5_1:5717337-5717356 Msa0713540:three_prime_UTR 35.0%
! GTCCCTCAACTTTTCTTTTT+AGG + chr5_1:5717520-5717539 Msa0713530:intron 35.0%
TCACATATTGATCAGTTGCA+TGG - chr5_1:5717623-5717642 Msa0713540:three_prime_UTR 35.0%
! AACTTTTAGGCTGTAAAAGC+CGG - chr5_1:5717793-5717812 Msa0713540:three_prime_UTR 35.0%
CTAAAATAATCCCGTTGAAC+CGG + chr5_1:5717815-5717834 Msa0713530:CDS 35.0%
TTTCCTGCCAAAAAGAGATA+TGG - chr5_1:5718288-5718307 Msa0713540:three_prime_UTR 35.0%
!! ATTCCATATCTCTTTTTGGC+AGG + chr5_1:5718294-5718313 None:intergenic 35.0%
TGCCAAAAAGAGATATGGAA+TGG - chr5_1:5718293-5718312 Msa0713540:three_prime_UTR 35.0%
! AATGGTTTTTCTTCTGTCCA+CGG - chr5_1:5718311-5718330 Msa0713540:three_prime_UTR 35.0%
CTATTTGTCCTTGAACCATT+TGG + chr5_1:5718349-5718368 None:intergenic 35.0%
AGTAAAAAACTAGGGTCTTG+CGG + chr5_1:5718468-5718487 None:intergenic 35.0%
!!! AAGACCCTAGTTTTTTACTG+TGG - chr5_1:5718469-5718488 Msa0713540:three_prime_UTR 35.0%
CTCTTCCACAGTAAAAAACT+AGG + chr5_1:5718477-5718496 None:intergenic 35.0%
TTTAGGTGATCGAACCAATT+GGG - chr5_1:5718501-5718520 Msa0713540:three_prime_UTR 35.0%
ATATTCATGCATGACCCAAT+TGG + chr5_1:5718518-5718537 None:intergenic 35.0%
AGCAATTCCATTTCAACCAA+TGG - chr5_1:5718772-5718791 Msa0713540:three_prime_UTR 35.0%
GCAATTCCATTTCAACCAAT+GGG - chr5_1:5718773-5718792 Msa0713540:three_prime_UTR 35.0%
TATCGAGTACAATCTCAACT+TGG - chr5_1:5719310-5719329 Msa0713540:intron 35.0%
AAACTTCCTTGTCCTGAATA+AGG + chr5_1:5719438-5719457 None:intergenic 35.0%
CAAGTTACAAGATGTTTCAG+TGG - chr5_1:5719568-5719587 Msa0713540:CDS 35.0%
AGTTACAAGATGTTTCAGTG+GGG - chr5_1:5719570-5719589 Msa0713540:CDS 35.0%
ATGCAAGAAGACTACATACA+CGG - chr5_1:5719637-5719656 Msa0713540:CDS 35.0%
TAGTTTCTGTCTAGTGCAAA+TGG + chr5_1:5719732-5719751 None:intergenic 35.0%
ATTATGTTGTGTAGGTTTCC+CGG - chr5_1:5719794-5719813 Msa0713540:intron 35.0%
TATATCGGTCATTGTATGTG+TGG - chr5_1:5719854-5719873 Msa0713540:CDS 35.0%
GTCTATTCAATTCCATGAGA+AGG - chr5_1:5720080-5720099 Msa0713540:CDS 35.0%
! TGATATTGTTGTGACTTGTG+AGG + chr5_1:5720138-5720157 None:intergenic 35.0%
!! TGCTTTAAAGAGTTTAGAGC+TGG + chr5_1:5720164-5720183 None:intergenic 35.0%
TTGAGGAAGTTGAAGAACTT+GGG + chr5_1:5720196-5720215 None:intergenic 35.0%
ATTGAGGAAGTTGAAGAACT+TGG + chr5_1:5720197-5720216 None:intergenic 35.0%
TGTGGAAACAGTTGCAAAAT+TGG + chr5_1:5720228-5720247 None:intergenic 35.0%
AAAGATGCAAAAGCAGCAAA+AGG - chr5_1:5720251-5720270 Msa0713540:intron 35.0%
AGATTCATTAATGCAGTCGA+AGG + chr5_1:5720351-5720370 None:intergenic 35.0%
!! GTCAGTTTTAACACTCGATA+AGG - chr5_1:5720403-5720422 Msa0713540:intron 35.0%
TAGAGCTTCATGAAGATGAT+CGG - chr5_1:5720565-5720584 Msa0713540:intron 35.0%
!! AAGATGATCGGAGAGTATTT+CGG - chr5_1:5720577-5720596 Msa0713540:intron 35.0%
ATATGTTATAACAGGAACCC+CGG - chr5_1:5720746-5720765 Msa0713540:intron 35.0%
ACAGTCTTAAACTTACAAGC+CGG - chr5_1:5720889-5720908 Msa0713540:CDS 35.0%
! CTGTTTGAGATCAGAAATTC+AGG + chr5_1:5720965-5720984 None:intergenic 35.0%
TGGCAGCAATATGTAAAAGT+TGG + chr5_1:5721033-5721052 None:intergenic 35.0%
! ACTTTTACATATTGCTGCCA+TGG - chr5_1:5721033-5721052 Msa0713540:five_prime_UTR 35.0%
! ATATCGCTTCGGTATTGAAT+TGG + chr5_1:5721114-5721133 None:intergenic 35.0%
ATGAGGATCTTATATCGCTT+CGG + chr5_1:5721125-5721144 None:intergenic 35.0%
GATATAAGATCCTCATTCGA+AGG - chr5_1:5721129-5721148 Msa0713540:five_prime_UTR 35.0%
ACTAACCAGTGTTTCATCAA+TGG - chr5_1:5721192-5721211 Msa0713540:five_prime_UTR 35.0%
TGGAGATATCAAATCATCTG+AGG + chr5_1:5721260-5721279 None:intergenic 35.0%
TCAGATGATTTGATATCTCC+AGG - chr5_1:5721259-5721278 Msa0713540:five_prime_UTR 35.0%
CAGATGATTTGATATCTCCA+GGG - chr5_1:5721260-5721279 Msa0713540:five_prime_UTR 35.0%
ACCATTCACCACTTTCTCTT+TGG - chr5_1:5717023-5717042 Msa0713540:three_prime_UTR 40.0%
ACCAAAGAGAAAGTGGTGAA+TGG + chr5_1:5717027-5717046 Msa0713530:intron 40.0%
!!! GTACATTTTTTCCTTTGGGG+TGG - chr5_1:5717170-5717189 Msa0713540:intron 40.0%
GAAATTGAAGATGACCTACC+AGG + chr5_1:5717605-5717624 Msa0713530:intron 40.0%
ACGTAATGTAGCAGAGTGAA+TGG - chr5_1:5717917-5717936 Msa0713540:three_prime_UTR 40.0%
GAGCTCAAAGCACAACAAAT+AGG - chr5_1:5717939-5717958 Msa0713540:three_prime_UTR 40.0%
CTCAAAGCACAACAAATAGG+AGG - chr5_1:5717942-5717961 Msa0713540:three_prime_UTR 40.0%
! ATAGGAGGATTTAAGGTGTG+AGG - chr5_1:5717957-5717976 Msa0713540:three_prime_UTR 40.0%
! TAGGAGGATTTAAGGTGTGA+GGG - chr5_1:5717958-5717977 Msa0713540:three_prime_UTR 40.0%
AAGCCCTTGAAATATGGTTC+AGG - chr5_1:5717984-5718003 Msa0713540:three_prime_UTR 40.0%
AGCCCTTGAAATATGGTTCA+GGG - chr5_1:5717985-5718004 Msa0713540:three_prime_UTR 40.0%
ACCCCTGAACCATATTTCAA+GGG + chr5_1:5717990-5718009 Msa0713530:CDS 40.0%
TACCCCTGAACCATATTTCA+AGG + chr5_1:5717991-5718010 Msa0713530:CDS 40.0%
TACCTCAACCAACCTATTGT+CGG - chr5_1:5718083-5718102 Msa0713540:three_prime_UTR 40.0%
! ATGGTTTTTCTTCTGTCCAC+GGG - chr5_1:5718312-5718331 Msa0713540:three_prime_UTR 40.0%
! TCAGTGGAAATGAATGGACT+AGG + chr5_1:5718430-5718449 None:intergenic 40.0%
ACAGTCTCAGTGGAAATGAA+TGG + chr5_1:5718436-5718455 None:intergenic 40.0%
!! CAATTGGTTCGATCACCTAA+AGG + chr5_1:5718502-5718521 None:intergenic 40.0%
CTTTAGGTGATCGAACCAAT+TGG - chr5_1:5718500-5718519 Msa0713540:three_prime_UTR 40.0%
AAGAGGGTTAGAGCTAATGA+TGG - chr5_1:5718748-5718767 Msa0713540:three_prime_UTR 40.0%
AGAGGGTTAGAGCTAATGAT+GGG - chr5_1:5718749-5718768 Msa0713540:three_prime_UTR 40.0%
ATACCAATCCTACAACCTTC+TGG - chr5_1:5718914-5718933 Msa0713540:CDS 40.0%
! TTTTTCCTCTTCCAACTAGC+AGG - chr5_1:5719230-5719249 Msa0713540:intron 40.0%
TTGAGAATAGTCCTGCTAGT+TGG + chr5_1:5719244-5719263 None:intergenic 40.0%
AACTAGCAGGACTATTCTCA+AGG - chr5_1:5719243-5719262 Msa0713540:intron 40.0%
ACTAGCAGGACTATTCTCAA+GGG - chr5_1:5719244-5719263 Msa0713540:intron 40.0%
GGGCAATTACAAGATGTTGT+TGG - chr5_1:5719264-5719283 Msa0713540:intron 40.0%
AAGGTGACATGCAACCAATT+TGG + chr5_1:5719419-5719438 None:intergenic 40.0%
ATGTCACCTTATTCAGGACA+AGG - chr5_1:5719429-5719448 Msa0713540:CDS 40.0%
TTCAGGACAAGGAAGTTTCA+TGG - chr5_1:5719440-5719459 Msa0713540:CDS 40.0%
! ACATACACGGATTTCTGAGA+CGG - chr5_1:5719650-5719669 Msa0713540:CDS 40.0%
TTCTGTCTAGTGCAAATGGA+GGG + chr5_1:5719728-5719747 None:intergenic 40.0%
TTTCTGTCTAGTGCAAATGG+AGG + chr5_1:5719729-5719748 None:intergenic 40.0%
! TGCTTTTGCATCTTTGCTTG+TGG + chr5_1:5720246-5720265 None:intergenic 40.0%
!! CACTAGTCTTGAATTCTCTG+AGG + chr5_1:5720282-5720301 None:intergenic 40.0%
ACTCTTCTGCATTGCTTGAT+TGG + chr5_1:5720385-5720404 None:intergenic 40.0%
! GTTTGAGCATGTTGTTTGCA+TGG - chr5_1:5720477-5720496 Msa0713540:intron 40.0%
TGCATGGTTGTGTTTGTGTT+TGG - chr5_1:5720493-5720512 Msa0713540:intron 40.0%
TCATCTTCATGAAGCTCTAC+AGG + chr5_1:5720564-5720583 None:intergenic 40.0%
!! AGATGATCGGAGAGTATTTC+GGG - chr5_1:5720578-5720597 Msa0713540:intron 40.0%
GTTCAAGGATCCATGCATAA+GGG + chr5_1:5720672-5720691 None:intergenic 40.0%
TGTTCAAGGATCCATGCATA+AGG + chr5_1:5720673-5720692 None:intergenic 40.0%
TATGCATGGATCCTTGAACA+TGG - chr5_1:5720673-5720692 Msa0713540:intron 40.0%
ATCAGTTAGAGCCATGTTCA+AGG + chr5_1:5720687-5720706 None:intergenic 40.0%
!! AACATGGCTCTAACTGATCT+TGG - chr5_1:5720689-5720708 Msa0713540:intron 40.0%
ATCTTGTGTTCAAACACAGC+CGG + chr5_1:5720817-5720836 None:intergenic 40.0%
CAAGATTTGATCTCGGAGTT+CGG - chr5_1:5720831-5720850 Msa0713540:CDS 40.0%
TACAAGCCGGTCACAATTTA+AGG - chr5_1:5720902-5720921 Msa0713540:CDS 40.0%
ACAAGCCGGTCACAATTTAA+GGG - chr5_1:5720903-5720922 Msa0713540:CDS 40.0%
GGTACTGTCACAAATTTCCA+TGG + chr5_1:5721053-5721072 None:intergenic 40.0%
TCTGAGGATCCCATATACAA+AGG + chr5_1:5721244-5721263 None:intergenic 40.0%
! TATGGAGAAATTGATAGCCC+TGG + chr5_1:5721280-5721299 None:intergenic 40.0%
!!! TTTTCCTTTGGGGTGGAGAT+AGG - chr5_1:5717177-5717196 Msa0713540:intron 45.0%
GTTGGATGGAAACGAAAACC+TGG + chr5_1:5717473-5717492 Msa0713530:intron 45.0%
! TCAACTCTTCATCGGTTGGA+TGG + chr5_1:5717487-5717506 Msa0713530:intron 45.0%
CCTATCAACTCTTCATCGGT+TGG + chr5_1:5717491-5717510 Msa0713530:intron 45.0%
! CCAACCGATGAAGAGTTGAT+AGG - chr5_1:5717488-5717507 Msa0713540:three_prime_UTR 45.0%
TTTGATCCTTGGGAGTTACC+TGG - chr5_1:5717584-5717603 Msa0713540:three_prime_UTR 45.0%
! AGGAGGATTTAAGGTGTGAG+GGG - chr5_1:5717959-5717978 Msa0713540:three_prime_UTR 45.0%
GCCCTTGAAATATGGTTCAG+GGG - chr5_1:5717986-5718005 Msa0713540:three_prime_UTR 45.0%
CTACTTCTCCGACAATAGGT+TGG + chr5_1:5718094-5718113 Msa0713530:CDS 45.0%
GTGTCTACTTCTCCGACAAT+AGG + chr5_1:5718098-5718117 Msa0713530:CDS 45.0%
GTCGGAGAAGTAGACACTAT+TGG - chr5_1:5718101-5718120 Msa0713540:three_prime_UTR 45.0%
GCAAGTACCCAAATGGTTCA+AGG - chr5_1:5718338-5718357 Msa0713540:three_prime_UTR 45.0%
ACAAATAGAGCCACCAAAGC+TGG - chr5_1:5718361-5718380 Msa0713540:three_prime_UTR 45.0%
! AACCTTCCTGTCTTTTCCTG+TGG + chr5_1:5718398-5718417 None:intergenic 45.0%
ATTTCCACTGAGACTGTCAC+AGG - chr5_1:5718439-5718458 Msa0713540:three_prime_UTR 45.0%
TACTGTGGAAGAGCTCCTTT+AGG - chr5_1:5718484-5718503 Msa0713540:three_prime_UTR 45.0%
CTTGGCTAGGATCATCATTG+AGG + chr5_1:5718543-5718562 None:intergenic 45.0%
CTCAATGATGATCCTAGCCA+AGG - chr5_1:5718541-5718560 Msa0713540:three_prime_UTR 45.0%
GAGAAGGCAAATGATTCCGA+AGG - chr5_1:5718715-5718734 Msa0713540:three_prime_UTR 45.0%
GCAAATGATTCCGAAGGACA+AGG - chr5_1:5718721-5718740 Msa0713540:three_prime_UTR 45.0%
AATGATTCCGAAGGACAAGG+AGG - chr5_1:5718724-5718743 Msa0713540:three_prime_UTR 45.0%
! CTCGTTCCCATTGGTTGAAA+TGG + chr5_1:5718782-5718801 None:intergenic 45.0%
CATTTCAACCAATGGGAACG+AGG - chr5_1:5718780-5718799 Msa0713540:three_prime_UTR 45.0%
ACAAGAAACCTCGTTCCCAT+TGG + chr5_1:5718791-5718810 None:intergenic 45.0%
CAGGCAAGTCAACTATTGAG+TGG - chr5_1:5718811-5718830 Msa0713540:three_prime_UTR 45.0%
GATTGGTATCAGAGGAAGCT+TGG + chr5_1:5718903-5718922 None:intergenic 45.0%
! GGTTGTAGGATTGGTATCAG+AGG + chr5_1:5718911-5718930 None:intergenic 45.0%
!! TCTACATGTGTCTGGTTCTG+CGG + chr5_1:5719183-5719202 None:intergenic 45.0%
ATAGTCCTGCTAGTTGGAAG+AGG + chr5_1:5719238-5719257 None:intergenic 45.0%
CTCGATAACTCATGTTGCTG+TGG + chr5_1:5719297-5719316 None:intergenic 45.0%
GACATGCAACCAATTTGGCT+AGG + chr5_1:5719414-5719433 None:intergenic 45.0%
GGTTGCATGTCACCTTATTC+AGG - chr5_1:5719423-5719442 Msa0713540:CDS 45.0%
CGGAACAATTTGCCTTCTCA+TGG + chr5_1:5720095-5720114 None:intergenic 45.0%
TGCAGTCGAAGGAAAACGAA+AGG + chr5_1:5720340-5720359 None:intergenic 45.0%
GGTCAAGGTAGACATGGAAA+AGG + chr5_1:5720440-5720459 None:intergenic 45.0%
!! CAAGTTGGTCAAGGTAGACA+TGG + chr5_1:5720446-5720465 None:intergenic 45.0%
AAACTAGCTGCTGCACAAGT+TGG + chr5_1:5720461-5720480 None:intergenic 45.0%
TTGGAACCTAAGAAGAGACG+AGG - chr5_1:5720512-5720531 Msa0713540:intron 45.0%
TCTCAACCTCGTCTCTTCTT+AGG + chr5_1:5720521-5720540 None:intergenic 45.0%
GAGACGAGGTTGAGACTTTA+TGG - chr5_1:5720526-5720545 Msa0713540:intron 45.0%
! AGAGTATTTCGGGAGAGCAA+TGG - chr5_1:5720588-5720607 Msa0713540:intron 45.0%
GCGACAGTTTCTTATGCTGT+TGG - chr5_1:5720610-5720629 Msa0713540:intron 45.0%
GCAAATAGTGCCTACGTATC+CGG - chr5_1:5720795-5720814 Msa0713540:CDS 45.0%
TGACAGTACCTAGAATGCCT+TGG - chr5_1:5721063-5721082 Msa0713540:five_prime_UTR 45.0%
AGTCTCTATGTGCCATCTCT+AGG + chr5_1:5721175-5721194 None:intergenic 45.0%
TGAACCTATCTCCACCCCAA+AGG + chr5_1:5717184-5717203 Msa0713530:intron 50.0%
GGATGGAAACGAAAACCTGG+AGG + chr5_1:5717470-5717489 Msa0713530:intron 50.0%
ATCCTTGGGAGTTACCTGGT+AGG - chr5_1:5717588-5717607 Msa0713540:three_prime_UTR 50.0%
! GGCTGTAAAAGCCGGTTCAA+CGG - chr5_1:5717801-5717820 Msa0713540:three_prime_UTR 50.0%
! GCTGTAAAAGCCGGTTCAAC+GGG - chr5_1:5717802-5717821 Msa0713540:three_prime_UTR 50.0%
!! CTCCGACAATAGGTTGGTTG+AGG + chr5_1:5718088-5718107 Msa0713530:CDS 50.0%
! TTTCCAGTAGCCAGCTTTGG+TGG + chr5_1:5718374-5718393 None:intergenic 50.0%
GGAAAGCCACAGGAAAAGAC+AGG - chr5_1:5718389-5718408 Msa0713540:three_prime_UTR 50.0%
AGCCACAGGAAAAGACAGGA+AGG - chr5_1:5718393-5718412 Msa0713540:three_prime_UTR 50.0%
GTAACCTGTGACAGTCTCAG+TGG + chr5_1:5718446-5718465 None:intergenic 50.0%
TGATGATCCTAGCCAAGGCT+CGG - chr5_1:5718546-5718565 Msa0713540:three_prime_UTR 50.0%
AGACATTTACCTCCGAGCCT+TGG + chr5_1:5718561-5718580 None:intergenic 50.0%
CCTCTTTCCTCCTTGTCCTT+CGG + chr5_1:5718734-5718753 None:intergenic 50.0%
CGAAGGACAAGGAGGAAAGA+GGG - chr5_1:5718732-5718751 Msa0713540:three_prime_UTR 50.0%
TGGGAACGAGGTTTCTTGTC+AGG - chr5_1:5718792-5718811 Msa0713540:three_prime_UTR 50.0%
CCATAGGAGGGACATTGCAT+TGG + chr5_1:5718870-5718889 None:intergenic 50.0%
CCAATGCAATGTCCCTCCTA+TGG - chr5_1:5718867-5718886 Msa0713540:CDS 50.0%
GGTCAAATCCAGCCATAGGA+GGG + chr5_1:5718882-5718901 None:intergenic 50.0%
TGGTCAAATCCAGCCATAGG+AGG + chr5_1:5718883-5718902 None:intergenic 50.0%
GCTTGGTCAAATCCAGCCAT+AGG + chr5_1:5718886-5718905 None:intergenic 50.0%
GAGCCAGAAGGTTGTAGGAT+TGG + chr5_1:5718920-5718939 None:intergenic 50.0%
!! CCAATTTGGCTAGGAGTGTC+AGG + chr5_1:5719405-5719424 None:intergenic 50.0%
CCTGACACTCCTAGCCAAAT+TGG - chr5_1:5719402-5719421 Msa0713540:intron 50.0%
!! AACCTCGAGTTGATGTGTCG+CGG + chr5_1:5720115-5720134 None:intergenic 50.0%
GGTAGACATGGAAAAGGCTC+TGG + chr5_1:5720434-5720453 None:intergenic 50.0%
ATGCATAAGGGTTGCAGCAG+AGG + chr5_1:5720660-5720679 None:intergenic 50.0%
TCTGCTGCAACCCTTATGCA+TGG - chr5_1:5720659-5720678 Msa0713540:intron 50.0%
TCAAACACAGCCGGATACGT+AGG + chr5_1:5720808-5720827 None:intergenic 50.0%
GTCTGATGCGTAGGCACAAT+TGG + chr5_1:5720857-5720876 None:intergenic 50.0%
TACGCATCAGACTGCAGAGT+GGG - chr5_1:5720865-5720884 Msa0713540:CDS 50.0%
ACAGCCATGTAGAGCAACCA+CGG - chr5_1:5720981-5721000 Msa0713540:five_prime_UTR 50.0%
TACACCGTGGTTGCTCTACA+TGG + chr5_1:5720988-5721007 None:intergenic 50.0%
GGAGCTGTTCTTCGCCAATT+CGG + chr5_1:5721012-5721031 None:intergenic 50.0%
! GCTTCGGTATTGAATTGGCC+AGG + chr5_1:5721109-5721128 None:intergenic 50.0%
GACCTACCAGGTAACTCCCA+AGG + chr5_1:5717593-5717612 Msa0713530:intron 55.0%
GGGGCGAAGCCCTTGAAATA+TGG - chr5_1:5717978-5717997 Msa0713540:three_prime_UTR 55.0%
TTTGGGTACTTGCGATCCCG+TGG + chr5_1:5718331-5718350 None:intergenic 55.0%
CGGGATCGCAAGTACCCAAA+TGG - chr5_1:5718331-5718350 Msa0713540:three_prime_UTR 55.0%
GGCTTTCCAGTAGCCAGCTT+TGG + chr5_1:5718377-5718396 None:intergenic 55.0%
TTTACCTCCGAGCCTTGGCT+AGG + chr5_1:5718556-5718575 None:intergenic 55.0%
CCGAAGGACAAGGAGGAAAG+AGG - chr5_1:5718731-5718750 Msa0713540:three_prime_UTR 55.0%
TGCAATGTCCCTCCTATGGC+TGG - chr5_1:5718871-5718890 Msa0713540:CDS 55.0%
TGGGAGAGCCAGAAGGTTGT+AGG + chr5_1:5718925-5718944 None:intergenic 55.0%
CATGTCATGGGAGAGCCAGA+AGG + chr5_1:5718932-5718951 None:intergenic 55.0%
TTCCGCGACACATCAACTCG+AGG - chr5_1:5720110-5720129 Msa0713540:intron 55.0%
!! GCTGCTGCACAAGTTGGTCA+AGG + chr5_1:5720455-5720474 None:intergenic 55.0%
CACTCTGCAGTCTGATGCGT+AGG + chr5_1:5720866-5720885 None:intergenic 55.0%
CTACGCATCAGACTGCAGAG+TGG - chr5_1:5720864-5720883 Msa0713540:CDS 55.0%
CAACCACGGTGTAGCCGAAT+TGG - chr5_1:5720995-5721014 Msa0713540:five_prime_UTR 55.0%
! GTTGGGAGCCAAGGCATTCT+AGG + chr5_1:5721074-5721093 None:intergenic 55.0%
! TGCATGCAAGTTGGGAGCCA+AGG + chr5_1:5721083-5721102 None:intergenic 55.0%
! CCAGGCGTTGCATGCAAGTT+GGG + chr5_1:5721091-5721110 None:intergenic 55.0%
GAGCCACCAAAGCTGGCTAC+TGG - chr5_1:5718368-5718387 Msa0713540:three_prime_UTR 60.0%
GCTGGCTACTGGAAAGCCAC+AGG - chr5_1:5718379-5718398 Msa0713540:three_prime_UTR 60.0%
TGATCCTAGCCAAGGCTCGG+AGG - chr5_1:5718549-5718568 Msa0713540:three_prime_UTR 60.0%
TCGCCAATTCGGCTACACCG+TGG + chr5_1:5721001-5721020 None:intergenic 60.0%
CCCAACTTGCATGCAACGCC+TGG - chr5_1:5721088-5721107 Msa0713540:five_prime_UTR 60.0%
! GCCAGGCGTTGCATGCAAGT+TGG + chr5_1:5721092-5721111 None:intergenic 60.0%
GGAGGAGCTTCACTGCCTCC+AGG - chr5_1:5717452-5717471 Msa0713540:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5717019 5721367 5717019 ID=Msa0713540;Name=Msa0713540
chr5_1 mRNA 5717019 5721367 5717019 ID=Msa0713540-mRNA-1;Parent=Msa0713540;Name=Msa0713540-mRNA-1;_AED=0.12;_eAED=0.12;_QI=430|1|1|1|0.75|0.6|5|1755|335
chr5_1 exon 5717019 5717185 5717019 ID=Msa0713540-mRNA-1:exon:2534;Parent=Msa0713540-mRNA-1
chr5_1 exon 5717277 5719134 5717277 ID=Msa0713540-mRNA-1:exon:2533;Parent=Msa0713540-mRNA-1
chr5_1 exon 5719417 5719707 5719417 ID=Msa0713540-mRNA-1:exon:2532;Parent=Msa0713540-mRNA-1
chr5_1 exon 5719816 5720105 5719816 ID=Msa0713540-mRNA-1:exon:2531;Parent=Msa0713540-mRNA-1
chr5_1 exon 5720781 5721367 5720781 ID=Msa0713540-mRNA-1:exon:2530;Parent=Msa0713540-mRNA-1
chr5_1 five_prime_UTR 5720938 5721367 5720938 ID=Msa0713540-mRNA-1:five_prime_utr;Parent=Msa0713540-mRNA-1
chr5_1 CDS 5720781 5720937 5720781 ID=Msa0713540-mRNA-1:cds;Parent=Msa0713540-mRNA-1
chr5_1 CDS 5719816 5720105 5719816 ID=Msa0713540-mRNA-1:cds;Parent=Msa0713540-mRNA-1
chr5_1 CDS 5719417 5719707 5719417 ID=Msa0713540-mRNA-1:cds;Parent=Msa0713540-mRNA-1
chr5_1 CDS 5718865 5719134 5718865 ID=Msa0713540-mRNA-1:cds;Parent=Msa0713540-mRNA-1
chr5_1 three_prime_UTR 5717277 5718864 5717277 ID=Msa0713540-mRNA-1:three_prime_utr;Parent=Msa0713540-mRNA-1
chr5_1 three_prime_UTR 5717019 5717185 5717019 ID=Msa0713540-mRNA-1:three_prime_utr;Parent=Msa0713540-mRNA-1
Gene Sequence

>Msa0713540

ATGGGAGGAGCTTCACTGCCTCCAGGTTTTCGTTTCCATCCAACCGATGAAGAGTTGATAGGATATTACCTAAAAAGAAAAGTTGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTTATTGAATTCTACAAATTTGATCCTTGGGAGTTACCTGAGAAATCTTTCCTGCCAAAAAGAGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGTTCAAGGACAAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACAGGAAAAGACAGGAAGGTTGTGTGTGAGCCTAGTCCATTCATTTCCACTGAGACTGTCACAGGTTACCGCAAGACCCTAGTTTTTTACTGTGGAAGAGCTCCTTTAGGTGATCGAACCAATTGGGTCATGCATGAATATCGCCTCAATGATGATCCTAGCCAAGGCTCGGAGGGTGCTTTTGCTTTATGCCGAGTTATTAAAAAGAATGAGAAGGCAAATGATTCCGAAGGACAAGGAGGAAAGAGGGTTAGAGCTAATGATGGGAGCAATTCCATTTCAACCAATGGGAACGAGGTTTCTTGTCAGGCAAGTCAACTATTGAGTGGCAGTGAGAGTCATTATTCAAGTCCTATTAACTTCCAATGCAATGTCCCTCCTATGGCTGGATTTGACCAAGCTTCCTCTGATACCAATCCTACAACCTTCTGGCTCTCCCATGACATGATTCTTGATTCTTCAAAGGACTATTCTCAAGGGCAATTACAAGATGTTGTTGGATGTTTTCCACAGCAACATGAGTTATCGAGTACAATCTCAACTTGGCAATCATTTCAACATACTGAAATTTCACCTTGTTCATCCTACTCAAATTTTAATGCGGAAATTGAATTTCCTGACACTCCTAGCCAAATTGGTTGCATGTCACCTTATTCAGGACAAGGAAGTTTCATGGACTTGCCTTATGAATGCTATGATCAGATTCATTCATTCAGGAATCCAAATCAATTCTGA
Protein sequence

>Msa0713540

MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIEFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSEGAFALCRVIKKNEKANDSEGQGGKRVRANDGSNSISTNGNEVSCQASQLLSGSESHYSSPINFQCNVPPMAGFDQASSDTNPTTFWLSHDMILDSSKDYSQGQLQDVVGCFPQQHELSSTISTWQSFQHTEISPCSSYSNFNAEIEFPDTPSQIGCMSPYSGQGSFMDLPYECYDQIHSFRNPNQF*