AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835020 MtrunA17_Chr5g0400461 96.119 335 13 0 1 335 1 335 0.0 674
Msa0835020 MtrunA17_Chr4g0054791 60.290 345 100 9 1 335 1 318 7.21e-132 378
Msa0835020 MtrunA17_Chr6g0481091 62.500 176 56 2 1 173 1 169 3.13e-74 229
Msa0835020 MtrunA17_Chr3g0109821 64.024 164 48 2 1 160 1 157 4.58e-70 230
Msa0835020 MtrunA17_Chr5g0433781 63.804 163 49 2 1 160 1 156 7.67e-67 221
Msa0835020 MtrunA17_Chr2g0309891 46.930 228 102 3 1 216 1 221 8.07e-67 213
Msa0835020 MtrunA17_Chr3g0128151 53.529 170 69 3 5 171 21 183 5.23e-53 183
Msa0835020 MtrunA17_Chr5g0428991 53.704 162 65 3 6 164 25 179 1.39e-52 183
Msa0835020 MtrunA17_Chr1g0201021 55.769 156 59 2 8 160 21 169 1.79e-52 181
Msa0835020 MtrunA17_Chr3g0128111 52.201 159 66 2 9 164 45 196 4.42e-52 172
Msa0835020 MtrunA17_Chr2g0318081 51.190 168 68 4 1 164 11 168 2.31e-51 174
Msa0835020 MtrunA17_Chr2g0309331 50.307 163 69 4 2 160 6 160 8.58e-51 172
Msa0835020 MtrunA17_Chr4g0018391 49.057 159 72 3 4 160 5 156 1.07e-50 172
Msa0835020 MtrunA17_Chr7g0252971 47.059 170 79 4 4 164 6 173 1.20e-50 171
Msa0835020 MtrunA17_Chr8g0384721 48.588 177 71 4 2 168 3 169 1.37e-50 169
Msa0835020 MtrunA17_Chr4g0056541 49.686 159 71 3 4 160 5 156 1.73e-50 171
Msa0835020 MtrunA17_Chr3g0130731 51.190 168 66 4 2 163 3 160 2.77e-50 169
Msa0835020 MtrunA17_Chr8g0359921 52.469 162 63 3 5 161 13 165 8.21e-50 169
Msa0835020 MtrunA17_Chr1g0200561 49.682 157 70 3 6 160 19 168 8.90e-50 169
Msa0835020 MtrunA17_Chr4g0017921 51.266 158 69 2 4 160 6 156 9.08e-50 169
Msa0835020 MtrunA17_Chr5g0405211 50.314 159 66 4 6 160 8 157 9.93e-50 169
Msa0835020 MtrunA17_Chr5g0398971 47.500 160 75 3 4 160 5 158 1.05e-49 169
Msa0835020 MtrunA17_Chr2g0318101 48.824 170 66 5 5 160 14 176 1.09e-49 169
Msa0835020 MtrunA17_Chr1g0197361 52.564 156 64 3 8 160 10 158 1.20e-49 174
Msa0835020 MtrunA17_Chr4g0060931 44.560 193 84 4 6 193 17 191 1.62e-49 169
Msa0835020 MtrunA17_Chr2g0316971 50.898 167 70 3 4 165 21 180 2.39e-49 169
Msa0835020 MtrunA17_Chr8g0372121 50.303 165 69 5 1 161 1 156 2.45e-49 167
Msa0835020 MtrunA17_Chr3g0091921 46.237 186 84 4 6 184 16 192 1.07e-48 165
Msa0835020 MtrunA17_Chr8g0364791 45.405 185 91 2 1 182 1 178 2.46e-48 168
Msa0835020 MtrunA17_Chr1g0197351 54.167 168 59 3 4 161 40 199 2.49e-48 169
Msa0835020 MtrunA17_Chr4g0076731 50.649 154 67 3 8 160 56 201 2.75e-48 167
Msa0835020 MtrunA17_Chr4g0042561 40.426 235 107 6 2 215 5 227 2.77e-48 163
Msa0835020 MtrunA17_Chr4g0047841 54.348 138 56 2 6 143 15 145 2.88e-48 165
Msa0835020 MtrunA17_Chr6g0453131 47.904 167 67 4 6 160 15 173 3.81e-48 166
Msa0835020 MtrunA17_Chr3g0130101 46.857 175 83 3 8 179 9 176 4.24e-48 165
Msa0835020 MtrunA17_Chr3g0124761 52.174 161 61 5 6 160 7 157 4.58e-48 163
Msa0835020 MtrunA17_Chr6g0484441 49.045 157 70 3 5 160 4 151 7.71e-48 164
Msa0835020 MtrunA17_Chr3g0092671 50.318 157 68 3 8 161 7 156 1.15e-47 168
Msa0835020 MtrunA17_Chr8g0346001 44.211 190 80 5 2 174 11 191 2.78e-47 165
Msa0835020 MtrunA17_Chr6g0453451 50.625 160 65 3 6 160 20 170 3.58e-47 162
Msa0835020 MtrunA17_Chr5g0417791 39.914 233 109 5 6 216 3 226 7.48e-47 159
Msa0835020 MtrunA17_Chr1g0147421 46.857 175 84 5 5 177 26 193 3.40e-46 160
Msa0835020 MtrunA17_Chr8g0361731 46.108 167 67 4 8 160 16 173 4.54e-46 160
Msa0835020 MtrunA17_Chr3g0139331 45.946 185 84 5 5 188 10 179 4.61e-46 159
Msa0835020 MtrunA17_Chr7g0214071 44.809 183 89 4 2 182 11 183 5.90e-46 157
Msa0835020 MtrunA17_Chr1g0183741 48.795 166 77 4 3 168 7 164 7.10e-46 157
Msa0835020 MtrunA17_Chr8g0384201 43.784 185 94 3 1 182 1 178 1.49e-45 161
Msa0835020 MtrunA17_Chr5g0417001 47.024 168 67 5 6 160 14 172 1.58e-45 159
Msa0835020 MtrunA17_Chr7g0263931 39.344 244 117 9 6 241 11 231 6.24e-45 156
Msa0835020 MtrunA17_Chr7g0261411 51.613 155 67 4 3 157 7 153 1.08e-44 154
Msa0835020 MtrunA17_Chr7g0253011 50.676 148 60 3 6 153 17 151 1.22e-44 157
Msa0835020 MtrunA17_Chr2g0326361 46.061 165 71 4 5 160 13 168 1.32e-44 155
Msa0835020 MtrunA17_Chr6g0461661 52.206 136 58 2 6 141 18 146 3.20e-44 155
Msa0835020 MtrunA17_Chr4g0038751 39.048 210 120 3 8 217 17 218 1.95e-42 149
Msa0835020 MtrunA17_Chr3g0144271 54.745 137 54 3 6 141 23 152 9.52e-42 150
Msa0835020 MtrunA17_Chr2g0312321 46.429 168 75 4 1 164 6 162 2.17e-41 146
Msa0835020 MtrunA17_Chr8g0345671 48.701 154 70 4 6 158 11 156 2.28e-41 148
Msa0835020 MtrunA17_Chr7g0217711 51.515 132 55 2 9 140 22 144 9.35e-41 140
Msa0835020 MtrunA17_Chr7g0217721 52.273 132 54 2 9 140 22 144 1.10e-40 145
Msa0835020 MtrunA17_Chr2g0311661 42.262 168 79 3 8 161 23 186 2.34e-40 143
Msa0835020 MtrunA17_Chr5g0442771 42.262 168 73 4 8 160 20 178 1.02e-39 142
Msa0835020 MtrunA17_Chr2g0311651 42.857 175 81 6 2 161 17 187 1.21e-39 142
Msa0835020 MtrunA17_Chr2g0321741 44.444 162 66 4 26 187 12 149 4.52e-38 139
Msa0835020 MtrunA17_Chr8g0385991 43.293 164 76 4 2 157 10 164 3.08e-37 133
Msa0835020 MtrunA17_Chr8g0345691 44.156 154 77 4 6 158 12 157 8.88e-37 137
Msa0835020 MtrunA17_Chr8g0345711 44.099 161 78 5 6 162 12 164 4.11e-35 125
Msa0835020 MtrunA17_Chr3g0131911 42.373 177 85 5 2 169 10 178 1.20e-34 127
Msa0835020 MtrunA17_Chr2g0321631 44.172 163 71 6 7 157 5 159 2.42e-34 126
Msa0835020 MtrunA17_Chr7g0266701 42.690 171 78 7 5 162 3 166 3.44e-34 126
Msa0835020 MtrunA17_Chr4g0026141 42.236 161 78 5 6 157 5 159 1.72e-32 121
Msa0835020 MtrunA17_Chr8g0345731 40.000 155 85 3 6 157 24 173 9.05e-32 117
Msa0835020 MtrunA17_Chr3g0113001 50.943 106 39 2 61 160 18 116 2.83e-30 116
Msa0835020 MtrunA17_Chr4g0050701 35.838 173 87 4 6 169 11 168 5.85e-29 110
Msa0835020 MtrunA17_Chr8g0345701 41.060 151 66 5 4 139 5 147 2.99e-26 102
Msa0835020 MtrunA17_Chr8g0345721 37.278 169 65 5 5 138 29 191 1.14e-25 102
Msa0835020 MtrunA17_Chr8g0345741 40.323 124 67 3 17 139 2 119 7.46e-25 98.6
Msa0835020 MtrunA17_Chr3g0113031 48.454 97 36 2 71 160 3 92 3.15e-23 97.1
Msa0835020 MtrunA17_Chr7g0243371 44.444 90 45 1 56 145 12 96 7.89e-21 86.7
Msa0835020 MtrunA17_Chr8g0384351 31.527 203 104 9 1 200 2 172 8.22e-18 80.1
Msa0835020 MtrunA17_Chr7g0251651 28.902 173 98 6 3 164 15 173 6.90e-14 69.3
Msa0835020 MtrunA17_Chr3g0130321 27.778 180 102 4 4 169 5 170 1.71e-13 68.6
Msa0835020 MtrunA17_Chr4g0040541 30.357 168 91 8 6 157 48 205 2.67e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835020 AT4G17980.2 52.632 323 108 10 1 315 1 286 4.52e-98 292
Msa0835020 AT4G17980.1 57.778 270 79 7 1 264 1 241 4.82e-97 288
Msa0835020 AT5G46590.1 54.982 271 92 7 1 266 1 246 6.00e-93 279
Msa0835020 AT1G32510.1 65.534 206 62 4 1 202 1 201 1.39e-86 262
Msa0835020 AT5G46590.2 53.731 268 89 7 1 266 1 235 1.87e-86 262
Msa0835020 AT1G65910.1 64.162 173 52 2 1 170 1 166 2.59e-71 233
Msa0835020 AT5G17260.1 46.809 282 119 7 1 267 1 266 2.77e-70 226
Msa0835020 AT1G54330.1 65.217 161 49 1 1 161 1 154 1.89e-69 219
Msa0835020 AT3G17730.1 63.030 165 49 3 1 161 1 157 4.52e-69 216
Msa0835020 AT3G03200.1 65.244 164 46 3 1 160 1 157 1.05e-68 223
Msa0835020 AT1G33060.1 52.761 163 67 2 1 160 19 174 2.16e-54 188
Msa0835020 AT3G10500.1 54.037 161 64 2 4 161 7 160 2.32e-54 186
Msa0835020 AT1G33060.2 52.761 163 67 2 1 160 19 174 2.40e-54 188
Msa0835020 AT4G35580.1 55.346 159 61 3 5 160 8 159 1.01e-53 184
Msa0835020 AT4G35580.3 55.346 159 61 3 5 160 8 159 1.10e-53 184
Msa0835020 AT4G35580.2 55.346 159 61 3 5 160 8 159 1.20e-53 184
Msa0835020 AT3G49530.2 51.553 161 69 2 5 162 12 166 1.48e-53 181
Msa0835020 AT3G49530.1 51.553 161 69 2 5 162 12 166 3.40e-53 182
Msa0835020 AT5G04410.1 54.088 159 63 2 5 160 8 159 9.30e-53 182
Msa0835020 AT5G22290.1 51.176 170 71 4 1 170 16 173 1.55e-52 177
Msa0835020 AT5G24590.2 50.595 168 74 2 1 165 8 169 1.92e-52 179
Msa0835020 AT1G71930.2 49.686 159 71 3 4 160 7 158 2.43e-51 173
Msa0835020 AT1G71930.1 49.686 159 71 3 4 160 7 158 2.43e-51 173
Msa0835020 AT1G79580.3 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0835020 AT1G79580.5 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0835020 AT1G79580.4 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0835020 AT1G79580.2 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0835020 AT1G79580.1 52.469 162 66 3 2 160 13 166 3.98e-51 174
Msa0835020 AT3G10490.1 51.534 163 68 2 3 161 24 179 4.09e-51 170
Msa0835020 AT3G10480.1 52.727 165 67 3 1 161 22 179 4.65e-51 176
Msa0835020 AT4G36160.2 53.165 158 65 4 5 160 13 163 5.79e-51 174
Msa0835020 AT4G36160.1 53.165 158 65 4 5 160 9 159 6.11e-51 173
Msa0835020 AT4G36160.3 53.165 158 65 4 5 160 9 159 6.11e-51 173
Msa0835020 AT4G27410.2 53.459 159 62 4 5 160 13 162 9.31e-51 171
Msa0835020 AT2G18060.3 50.617 162 71 4 1 160 4 158 1.08e-50 172
Msa0835020 AT2G18060.1 50.617 162 71 4 1 160 4 158 1.08e-50 172
Msa0835020 AT3G10480.2 51.829 164 69 2 1 161 22 178 1.59e-50 174
Msa0835020 AT3G44290.2 53.548 155 60 3 8 162 16 158 1.62e-50 168
Msa0835020 AT1G12260.2 49.686 159 71 3 4 160 5 156 1.84e-50 171
Msa0835020 AT1G12260.1 49.686 159 71 3 4 160 5 156 1.87e-50 172
Msa0835020 AT4G10350.1 42.616 237 104 8 1 220 1 222 2.54e-50 171
Msa0835020 AT5G64060.1 48.171 164 75 2 1 161 1 157 2.65e-50 171
Msa0835020 AT5G07680.2 49.143 175 67 4 6 175 3 160 2.85e-50 170
Msa0835020 AT5G07680.1 49.143 175 67 4 6 175 17 174 3.75e-50 170
Msa0835020 AT2G02450.2 51.948 154 65 3 8 160 53 198 7.84e-50 171
Msa0835020 AT1G52890.1 52.727 165 62 5 5 164 13 166 7.99e-50 169
Msa0835020 AT3G04070.2 50.877 171 70 5 4 164 8 174 9.07e-50 169
Msa0835020 AT2G02450.1 51.948 154 65 3 8 160 53 198 9.94e-50 170
Msa0835020 AT3G44290.1 53.548 155 60 3 8 162 16 158 1.04e-49 169
Msa0835020 AT3G10490.2 51.534 163 68 2 3 161 24 179 1.13e-49 172
Msa0835020 AT3G15500.1 52.727 165 62 5 5 164 13 166 1.60e-49 168
Msa0835020 AT2G24430.2 51.250 160 69 3 5 162 15 167 2.19e-49 167
Msa0835020 AT2G24430.1 51.250 160 69 3 5 162 15 167 2.19e-49 167
Msa0835020 AT2G27300.1 51.572 159 65 3 1 159 9 155 2.58e-49 168
Msa0835020 AT5G09330.5 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0835020 AT5G09330.2 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0835020 AT5G09330.4 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0835020 AT5G09330.3 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0835020 AT5G09330.1 44.324 185 93 2 1 182 1 178 3.30e-49 172
Msa0835020 AT1G62700.1 47.853 163 76 3 4 164 5 160 1.19e-48 168
Msa0835020 AT1G62700.2 47.853 163 76 3 4 164 5 160 1.19e-48 168
Msa0835020 AT5G61430.1 48.000 175 69 4 6 175 16 173 1.56e-48 166
Msa0835020 AT5G39610.1 51.250 160 64 3 6 160 20 170 2.01e-48 164
Msa0835020 AT1G61110.1 46.857 175 70 4 2 161 12 178 2.22e-48 165
Msa0835020 AT1G69490.1 46.591 176 75 4 4 169 7 173 3.76e-48 163
Msa0835020 AT3G04070.1 56.115 139 57 3 4 142 8 142 4.28e-48 166
Msa0835020 AT3G29035.1 54.088 159 54 4 6 162 24 165 4.98e-48 164
Msa0835020 AT5G66300.1 49.383 162 68 5 5 161 11 163 6.26e-48 163
Msa0835020 AT1G33280.1 48.734 158 73 2 4 160 6 156 7.11e-48 163
Msa0835020 AT1G34190.1 50.307 163 71 2 2 161 12 167 7.35e-48 169
Msa0835020 AT3G18400.1 48.780 164 69 4 5 164 4 156 8.06e-48 164
Msa0835020 AT4G27410.3 50.000 174 62 5 5 160 13 179 8.59e-48 164
Msa0835020 AT3G15170.1 50.932 161 67 3 6 161 20 173 8.63e-48 163
Msa0835020 AT1G32770.1 46.286 175 69 5 2 160 12 177 1.13e-47 164
Msa0835020 AT5G08790.1 49.697 165 65 3 5 161 6 160 2.77e-47 161
Msa0835020 AT1G01720.1 55.474 137 51 3 6 142 7 133 5.83e-47 160
Msa0835020 AT3G04060.1 49.080 163 70 3 4 161 18 172 7.67e-47 162
Msa0835020 AT3G61910.1 43.017 179 74 4 2 161 7 176 1.38e-46 161
Msa0835020 AT5G62380.2 47.170 159 75 3 4 160 5 156 1.44e-46 161
Msa0835020 AT5G62380.1 47.170 159 75 3 4 160 5 156 1.44e-46 161
Msa0835020 AT2G43000.1 50.000 158 64 4 8 160 20 167 1.47e-46 159
Msa0835020 AT3G10480.3 43.939 198 67 3 1 161 22 212 4.98e-46 164
Msa0835020 AT1G34180.3 50.641 156 67 3 8 160 18 166 6.27e-46 162
Msa0835020 AT2G46770.1 50.345 145 60 3 2 143 12 147 7.43e-46 160
Msa0835020 AT5G18270.2 49.080 163 70 3 4 161 19 173 9.04e-46 159
Msa0835020 AT5G18270.1 46.471 170 78 3 4 168 19 180 1.74e-45 158
Msa0835020 AT1G77450.1 42.534 221 99 9 3 215 5 205 1.80e-45 155
Msa0835020 AT5G53950.1 49.697 165 71 3 6 165 17 174 2.03e-45 159
Msa0835020 AT1G34180.1 50.000 156 68 2 8 160 18 166 3.65e-45 162
Msa0835020 AT2G33480.1 48.521 169 72 3 2 167 11 167 5.64e-45 155
Msa0835020 AT5G63790.1 49.390 164 65 4 5 160 49 202 6.07e-45 156
Msa0835020 AT5G63790.2 49.390 164 65 4 5 160 59 212 6.42e-45 156
Msa0835020 AT2G17040.1 40.553 217 109 5 1 205 1 209 8.09e-45 154
Msa0835020 AT5G39820.1 37.118 229 110 4 8 212 22 240 2.88e-44 155
Msa0835020 AT3G15510.1 44.970 169 72 4 10 164 21 182 3.12e-44 155
Msa0835020 AT1G26870.1 47.337 169 66 4 6 160 16 175 3.25e-44 157
Msa0835020 AT1G76420.1 50.955 157 68 3 6 160 22 171 4.18e-44 154
Msa0835020 AT1G32870.1 52.469 162 63 3 4 160 8 160 1.02e-43 157
Msa0835020 AT1G32870.2 52.469 162 63 3 4 160 8 160 1.04e-43 157
Msa0835020 AT1G52880.1 47.239 163 70 4 10 161 21 178 1.05e-43 153
Msa0835020 AT2G33480.2 47.904 167 74 3 2 167 11 165 1.10e-43 151
Msa0835020 AT1G32870.3 52.469 162 63 3 4 160 44 196 2.69e-43 157
Msa0835020 AT1G34180.4 41.063 207 100 4 2 193 12 211 7.25e-43 154
Msa0835020 AT5G13180.1 46.988 166 76 3 2 165 10 165 2.57e-42 147
Msa0835020 AT1G34180.2 47.024 168 67 4 8 160 18 178 4.38e-42 154
Msa0835020 AT3G12977.1 44.118 170 82 3 1 166 13 173 8.42e-41 144
Msa0835020 AT4G28530.1 45.714 175 69 6 3 160 7 172 8.91e-40 143
Msa0835020 AT1G56010.2 44.643 168 77 5 1 161 14 172 3.43e-39 141
Msa0835020 AT3G12910.1 42.708 192 79 8 8 176 23 206 7.21e-38 137
Msa0835020 AT5G04395.1 46.053 152 65 3 5 143 27 174 3.05e-35 127
Msa0835020 AT5G61430.2 48.333 120 42 3 61 175 6 110 1.23e-30 117
Msa0835020 AT5G22380.1 40.881 159 77 6 9 157 8 159 1.13e-29 114
Msa0835020 AT4G10350.2 41.520 171 72 6 63 220 20 175 3.04e-29 114
Msa0835020 AT3G44350.2 34.123 211 121 7 3 205 2 202 2.63e-28 110
Msa0835020 AT4G01550.1 35.938 192 112 4 9 199 7 188 8.26e-28 113
Msa0835020 AT4G01520.1 34.884 215 124 7 7 213 5 211 7.78e-27 107
Msa0835020 AT3G12977.2 49.074 108 44 2 63 166 20 120 1.45e-26 105
Msa0835020 AT3G04420.2 36.709 158 89 4 7 162 4 152 1.67e-26 107
Msa0835020 AT3G04420.1 36.709 158 89 4 7 162 4 152 1.97e-26 107
Msa0835020 AT3G44350.1 39.456 147 78 5 3 145 2 141 4.51e-26 102
Msa0835020 AT1G56010.1 49.541 109 40 3 63 164 8 108 2.23e-25 103
Msa0835020 AT4G28530.2 46.491 114 41 3 3 99 7 117 3.62e-25 103
Msa0835020 AT1G02230.1 35.057 174 97 7 7 175 4 166 1.71e-24 102
Msa0835020 AT4G01540.3 37.267 161 93 4 9 167 7 161 1.75e-24 103
Msa0835020 AT4G01540.4 37.267 161 93 4 9 167 7 161 1.89e-24 102
Msa0835020 AT5G64530.1 35.025 197 108 5 4 200 1 177 1.94e-24 98.6
Msa0835020 AT2G33480.3 47.222 108 47 2 63 167 10 110 2.95e-24 99.0
Msa0835020 AT1G02250.1 34.804 204 109 8 7 197 4 196 3.33e-24 102
Msa0835020 AT4G01540.2 37.267 161 93 4 9 167 7 161 5.07e-24 102
Msa0835020 AT4G01540.1 37.267 161 93 4 9 167 7 161 5.31e-24 102
Msa0835020 AT5G64530.2 39.855 138 64 4 5 142 2 120 6.89e-24 96.3
Msa0835020 AT1G02220.1 35.766 137 70 4 7 138 4 127 2.20e-21 94.4
Msa0835020 AT1G01010.1 34.783 161 96 6 9 165 6 161 9.11e-21 92.8
Msa0835020 AT3G10490.4 50.588 85 31 2 81 161 2 79 3.41e-18 84.7
Msa0835020 AT3G10490.3 50.588 85 31 2 81 161 2 79 3.41e-18 84.7
Msa0835020 AT5G14000.1 30.556 180 108 4 2 179 11 175 6.84e-18 81.3
Msa0835020 AT3G55210.1 31.515 165 91 5 6 157 11 166 6.12e-17 80.1
Msa0835020 AT5G14000.2 33.333 141 81 3 2 140 11 140 7.01e-17 77.4
Msa0835020 AT3G56530.1 29.487 156 99 4 5 157 51 198 1.59e-16 79.3
Msa0835020 AT2G43000.2 42.708 96 42 3 70 160 2 89 1.95e-16 77.0
Msa0835020 AT5G50820.1 30.198 202 108 8 1 191 10 189 4.55e-16 75.9
Msa0835020 AT2G18060.2 48.684 76 31 3 86 160 2 70 1.41e-14 73.2
Msa0835020 AT5G22290.2 42.857 84 37 3 87 170 2 74 9.28e-13 67.4
Msa0835020 AT1G28470.1 33.775 151 76 8 5 140 76 217 2.46e-11 64.3

Find 205 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGCCGGTCACAATTTA+AGG 0.122169 5_4:-8298376 Msa0835020:three_prime_UTR
ATTCTTATAACCTTTGTATA+TGG 0.174550 5_4:-8298047 Msa0835020:three_prime_UTR
TTATAGATTTCATCCGAATT+TGG 0.216728 5_4:-8299449 Msa0835020:three_prime_UTR
AAGTGAAACTGAAAATATTT+TGG 0.218909 5_4:+8301902 None:intergenic
GAGACGAGGTTGAGACTTTA+TGG 0.233252 5_4:-8298752 Msa0835020:three_prime_UTR
TCTCAACCTCGTCTCTTCTT+AGG 0.247691 5_4:+8298760 Msa0835010:CDS
ACTCAAAGACAGACATTAAA+AGG 0.255543 5_4:+8299603 None:intergenic
ACCATTCACCACTTTCTCTT+TGG 0.260036 5_4:-8302254 Msa0835020:five_prime_UTR
CTATTTGTCCTTGAACCATT+TGG 0.260232 5_4:+8300932 None:intergenic
TGTGGAAACAGTTGCAAAAT+TGG 0.260709 5_4:+8299053 Msa0835010:CDS
ACTCTTCTGCATTGCTTGAT+TGG 0.276649 5_4:+8298896 Msa0835010:CDS
GGTTGCATGTCACCTTATTC+AGG 0.278280 5_4:-8299855 Msa0835020:CDS
CAAAAGTGAAGGCTTTAAAA+AGG 0.279028 5_4:+8302213 None:intergenic
CCTGACACTCCTAGCCAAAT+TGG 0.283562 5_4:-8299876 Msa0835020:CDS
CAAAGGTTATAAGAATGTTT+TGG 0.284044 5_4:+8298054 Msa0835010:CDS
CTCGTTCCCATTGGTTGAAA+TGG 0.287030 5_4:+8300499 None:intergenic
ATGATCAGATTCATTCATTC+AGG 0.291099 5_4:-8299797 Msa0835020:CDS
AGATGATCGGAGAGTATTTC+GGG 0.298853 5_4:-8298700 Msa0835020:three_prime_UTR
AAACTTCCTTGTCCTGAATA+AGG 0.309664 5_4:+8299843 None:intergenic
TATTTGTCCTTGAACCATTT+GGG 0.317092 5_4:+8300933 None:intergenic
ACATTGCATTGGAAGTTAAT+AGG 0.319093 5_4:+8300422 None:intergenic
TGCATGGTTGTGTTTGTGTT+TGG 0.345549 5_4:-8298785 Msa0835020:three_prime_UTR
GTTGGGAGCCAAGGCATTCT+AGG 0.347134 5_4:+8298207 Msa0835010:CDS
GGCTTTCCAGTAGCCAGCTT+TGG 0.349829 5_4:+8300904 None:intergenic
AAGATGATCGGAGAGTATTT+CGG 0.350796 5_4:-8298701 Msa0835020:three_prime_UTR
CTGTTTGAGATCAGAAATTC+AGG 0.351569 5_4:+8298316 Msa0835010:CDS
AATTCTACAAATTTGATCCT+TGG 0.356563 5_4:-8301704 Msa0835020:CDS
GTGTGTAATATTCCTAAGTT+TGG 0.358091 5_4:-8302129 Msa0835020:five_prime_UTR
TTCAGGACAAGGAAGTTTCA+TGG 0.359502 5_4:-8299838 Msa0835020:CDS
CATCCGAATTTGGTTTATAT+CGG 0.360065 5_4:-8299439 Msa0835020:three_prime_UTR
CCAGGCGTTGCATGCAAGTT+GGG 0.364061 5_4:+8298190 Msa0835010:intron
TTCTTATAACCTTTGTATAT+GGG 0.365139 5_4:-8298046 Msa0835020:three_prime_UTR
ATTCTACAAATTTGATCCTT+GGG 0.375015 5_4:-8301703 Msa0835020:CDS
CAACCACGGTGTAGCCGAAT+TGG 0.384589 5_4:-8298283 Msa0835020:three_prime_UTR
GTCTGATGCGTAGGCACAAT+TGG 0.387107 5_4:+8298424 Msa0835010:intron
ATTATGTTGTGTAGGTTTCC+CGG 0.391471 5_4:-8299484 Msa0835020:three_prime_UTR
CCTCTTTCCTCCTTGTCCTT+CGG 0.394344 5_4:+8300547 None:intergenic
AAGGTGACATGCAACCAATT+TGG 0.396046 5_4:+8299862 None:intergenic
ATTGAGGAAGTTGAAGAACT+TGG 0.400564 5_4:+8299084 Msa0835010:CDS
CCCAACTTGCATGCAACGCC+TGG 0.403538 5_4:-8298190 Msa0835020:intron
TAATGAATATATGTTATAAC+AGG 0.408990 5_4:-8298540 Msa0835020:three_prime_UTR
ATACCAATCCTACAACCTTC+TGG 0.410453 5_4:-8300364 Msa0835020:CDS
TGACCGATATAAACCAAATT+CGG 0.415532 5_4:+8299436 None:intergenic
TCTGAAAACAAAGAAGGAAT+AGG 0.417637 5_4:-8299761 Msa0835020:exon
CTTTAGGTGATCGAACCAAT+TGG 0.418283 5_4:-8300778 Msa0835020:CDS
CCAATTTGGCTAGGAGTGTC+AGG 0.418438 5_4:+8299876 None:intergenic
AATTTGTAGAATTCAATAAC+AGG 0.424548 5_4:+8301714 None:intergenic
GAGCCACCAAAGCTGGCTAC+TGG 0.428919 5_4:-8300910 Msa0835020:CDS
TACTGTGGAAGAGCTCCTTT+AGG 0.431670 5_4:-8300794 Msa0835020:CDS
TGGGAACGAGGTTTCTTGTC+AGG 0.433403 5_4:-8300486 Msa0835020:CDS
ATTCATCAAATAAAAGACTA+AGG 0.436824 5_4:-8299244 Msa0835020:three_prime_UTR
TCTATAAAAGTGATATCATC+CGG 0.438124 5_4:+8299465 None:intergenic
CAAGATTTGATCTCGGAGTT+CGG 0.438171 5_4:-8298447 Msa0835020:three_prime_UTR
TAGTTTCTGTCTAGTGCAAA+TGG 0.441303 5_4:+8299549 None:intergenic
TGCAATGTCCCTCCTATGGC+TGG 0.442131 5_4:-8300407 Msa0835020:CDS
GCGACAGTTTCTTATGCTGT+TGG 0.449688 5_4:-8298668 Msa0835020:three_prime_UTR
ACTAACCAGTGTTTCATCAA+TGG 0.450544 5_4:-8298086 Msa0835020:intron
GCAAATAGTGCCTACGTATC+CGG 0.451186 5_4:-8298483 Msa0835020:three_prime_UTR
CCGAAGGACAAGGAGGAAAG+AGG 0.451346 5_4:-8300547 Msa0835020:CDS
CGGAACAATTTGCCTTCTCA+TGG 0.454690 5_4:+8299186 Msa0835010:CDS
TGGGAGAGCCAGAAGGTTGT+AGG 0.455808 5_4:+8300356 None:intergenic
ACAAATAGAGCCACCAAAGC+TGG 0.456357 5_4:-8300917 Msa0835020:CDS
AAAATTGGATCTTGTTATTG+AGG 0.463462 5_4:+8299068 Msa0835010:CDS
ACAAGCCGGTCACAATTTAA+GGG 0.465753 5_4:-8298375 Msa0835020:three_prime_UTR
TCATCTTCATGAAGCTCTAC+AGG 0.467841 5_4:+8298717 Msa0835010:CDS
GGAGCTGTTCTTCGCCAATT+CGG 0.468447 5_4:+8298269 Msa0835010:CDS
AACATGGCTCTAACTGATCT+TGG 0.468885 5_4:-8298589 Msa0835020:three_prime_UTR
TTTAGGTGATCGAACCAATT+GGG 0.469718 5_4:-8300777 Msa0835020:CDS
ATATTCATGCATGACCCAAT+TGG 0.471797 5_4:+8300763 None:intergenic
TTGAGGAAGTTGAAGAACTT+GGG 0.474676 5_4:+8299085 Msa0835010:CDS
AGGAACATAGAAATATAGAA+TGG 0.474922 5_4:-8301847 Msa0835020:exon
AGTTAAACAAAAGATGTGAA+TGG 0.475321 5_4:-8299668 Msa0835020:three_prime_UTR
TCAGATGATTTGATATCTCC+AGG 0.475473 5_4:-8298019 Msa0835020:three_prime_UTR
CCAACCGATGAAGAGTTGAT+AGG 0.477569 5_4:-8301789 Msa0835020:CDS
TTTCCAGTAGCCAGCTTTGG+TGG 0.478466 5_4:+8300907 None:intergenic
GGGCAATTACAAGATGTTGT+TGG 0.478523 5_4:-8300014 Msa0835020:CDS
AAAGATGCAAAAGCAGCAAA+AGG 0.479326 5_4:-8299027 Msa0835020:three_prime_UTR
TGCTTTAAAGAGTTTAGAGC+TGG 0.480144 5_4:+8299117 Msa0835010:CDS
TACACCGTGGTTGCTCTACA+TGG 0.480998 5_4:+8298293 Msa0835010:CDS
GCAATTCCATTTCAACCAAT+GGG 0.481299 5_4:-8300505 Msa0835020:CDS
TGTTCAAGGATCCATGCATA+AGG 0.481436 5_4:+8298608 Msa0835010:CDS
AAGAGGGTTAGAGCTAATGA+TGG 0.484892 5_4:-8300530 Msa0835020:CDS
ACAATGATTCTGGAGCATAA+TGG 0.486626 5_4:-8302045 Msa0835020:five_prime_UTR
ATCAGTTAGAGCCATGTTCA+AGG 0.486726 5_4:+8298594 Msa0835010:CDS
AGCAATTCCATTTCAACCAA+TGG 0.488117 5_4:-8300506 Msa0835020:CDS
GGTAGACATGGAAAAGGCTC+TGG 0.488167 5_4:+8298847 Msa0835010:CDS
CATGATTCTTGATTCTTCAA+AGG 0.488637 5_4:-8300330 Msa0835020:intron
TTAATCCCTTAAATTGTGAC+CGG 0.488804 5_4:+8298370 Msa0835010:intron
GGAGGAGCTTCACTGCCTCC+AGG 0.489497 5_4:-8301825 Msa0835020:CDS
GCCAGGCGTTGCATGCAAGT+TGG 0.489802 5_4:+8298189 Msa0835010:intron
AAAATAAACCAAAGAGAAAG+TGG 0.490273 5_4:+8302246 None:intergenic
TGCATGCAAGTTGGGAGCCA+AGG 0.493195 5_4:+8298198 Msa0835010:CDS
CCAATGCAATGTCCCTCCTA+TGG 0.494392 5_4:-8300411 Msa0835020:CDS
ATGGATAGGTATAGTACTCT+TGG 0.500590 5_4:-8301940 Msa0835020:five_prime_UTR
GGTTGTAGGATTGGTATCAG+AGG 0.501312 5_4:+8300370 None:intergenic
GAGCCAGAAGGTTGTAGGAT+TGG 0.503637 5_4:+8300361 None:intergenic
ATCTGATCATAGCATTCATA+AGG 0.503854 5_4:+8299810 None:intergenic
CCTATCAACTCTTCATCGGT+TGG 0.504532 5_4:+8301789 None:intergenic
GTTTGAGCATGTTGTTTGCA+TGG 0.505188 5_4:-8298801 Msa0835020:three_prime_UTR
TGTAATTTATTATGTTGTGT+AGG 0.505587 5_4:-8299492 Msa0835020:three_prime_UTR
ATCAATTCTGAAAACAAAGA+AGG 0.507825 5_4:-8299767 Msa0835020:exon
GGAACATAGAAATATAGAAT+GGG 0.513465 5_4:-8301846 Msa0835020:exon
TGGCAGCAATATGTAAAAGT+TGG 0.518460 5_4:+8298248 Msa0835010:CDS
GTCTATTCAATTCCATGAGA+AGG 0.518933 5_4:-8299198 Msa0835020:three_prime_UTR
TCAACTCTTCATCGGTTGGA+TGG 0.522689 5_4:+8301793 None:intergenic
CGGGATCGCAAGTACCCAAA+TGG 0.524999 5_4:-8300947 Msa0835020:CDS
ATGCATAAGGGTTGCAGCAG+AGG 0.527389 5_4:+8298621 Msa0835010:CDS
ATTTCCACTGAGACTGTCAC+AGG 0.530687 5_4:-8300839 Msa0835020:CDS
ACAAGAAACCTCGTTCCCAT+TGG 0.531913 5_4:+8300490 None:intergenic
AGACATTTACCTCCGAGCCT+TGG 0.532346 5_4:+8300720 None:intergenic
TATGGAGAAATTGATAGCCC+TGG 0.532775 5_4:+8298001 Msa0835010:CDS
GCAAGTACCCAAATGGTTCA+AGG 0.532989 5_4:-8300940 Msa0835020:CDS
AAGAATCAAGAATCATGTCA+TGG 0.536644 5_4:+8300336 None:intergenic
AAGTTACAAGATGTTTCAGT+GGG 0.536724 5_4:-8299709 Msa0835020:three_prime_UTR
CACTCTGCAGTCTGATGCGT+AGG 0.538972 5_4:+8298415 Msa0835010:intron
TGTCTTGATTTAGATTTACA+AGG 0.540561 5_4:-8297936 Msa0835020:three_prime_UTR
CCATAGGAGGGACATTGCAT+TGG 0.543388 5_4:+8300411 None:intergenic
AATAGCTTATATAATGGATG+AGG 0.543955 5_4:-8299392 Msa0835020:three_prime_UTR
GTTCAAGGATCCATGCATAA+GGG 0.544118 5_4:+8298609 Msa0835010:CDS
AAACTAGCTGCTGCACAAGT+TGG 0.544612 5_4:+8298820 Msa0835010:CDS
GATTGGTATCAGAGGAAGCT+TGG 0.544770 5_4:+8300378 None:intergenic
TGACAGTACCTAGAATGCCT+TGG 0.545491 5_4:-8298215 Msa0835020:three_prime_UTR
TCATGATCAATTTACTCAGT+AGG 0.549130 5_4:+8299352 None:intergenic
GAAACAGTTTGCAAAAGTGA+AGG 0.549134 5_4:+8302202 None:intergenic
AACTAGCAGGACTATTCTCA+AGG 0.550921 5_4:-8300035 Msa0835020:intron
TATATCGGTCATTGTATGTG+TGG 0.552924 5_4:-8299424 Msa0835020:three_prime_UTR
TTTACCTCCGAGCCTTGGCT+AGG 0.552976 5_4:+8300725 None:intergenic
CAAGTTGGTCAAGGTAGACA+TGG 0.553561 5_4:+8298835 Msa0835010:CDS
ACCAAAGAGAAAGTGGTGAA+TGG 0.554609 5_4:+8302253 None:intergenic
GGTCAAGGTAGACATGGAAA+AGG 0.558508 5_4:+8298841 Msa0835010:CDS
TTTGATCCTTGGGAGTTACC+TGG 0.560186 5_4:-8301693 Msa0835020:intron
ATCTTGTGTTCAAACACAGC+CGG 0.561794 5_4:+8298464 Msa0835010:intron
TTGAACACAAGATTTGATCT+CGG 0.564648 5_4:-8298454 Msa0835020:three_prime_UTR
TACGCATCAGACTGCAGAGT+GGG 0.567158 5_4:-8298413 Msa0835020:three_prime_UTR
TTCCGCATTAAAATTTGAGT+AGG 0.567816 5_4:+8299908 None:intergenic
ACTTATTATTAGTACTCAGT+GGG 0.568638 5_4:+8299314 None:intergenic
TTCTGTCTAGTGCAAATGGA+GGG 0.570441 5_4:+8299553 None:intergenic
TTTGGGTACTTGCGATCCCG+TGG 0.573459 5_4:+8300950 None:intergenic
ATATCCTATCAACTCTTCAT+CGG 0.573542 5_4:+8301785 None:intergenic
TTCATCAAATAAAAGACTAA+GGG 0.574168 5_4:-8299243 Msa0835020:three_prime_UTR
CTCGATAACTCATGTTGCTG+TGG 0.576057 5_4:+8299984 None:intergenic
TGGTCAAATCCAGCCATAGG+AGG 0.577334 5_4:+8300398 None:intergenic
TCAGTGGAAATGAATGGACT+AGG 0.578648 5_4:+8300851 None:intergenic
TAGAGCTTCATGAAGATGAT+CGG 0.579444 5_4:-8298713 Msa0835020:three_prime_UTR
CATTTCAACCAATGGGAACG+AGG 0.580432 5_4:-8300498 Msa0835020:CDS
GTTGGATGGAAACGAAAACC+TGG 0.583973 5_4:+8301807 None:intergenic
ACAGTCTCAGTGGAAATGAA+TGG 0.584355 5_4:+8300845 None:intergenic
CAATTGGTTCGATCACCTAA+AGG 0.588285 5_4:+8300779 None:intergenic
TGATGATCCTAGCCAAGGCT+CGG 0.588446 5_4:-8300732 Msa0835020:CDS
GCTTGGTCAAATCCAGCCAT+AGG 0.594904 5_4:+8300395 None:intergenic
AGAATCAAGAATCATGTCAT+GGG 0.595091 5_4:+8300337 None:intergenic
GCTGGCTACTGGAAAGCCAC+AGG 0.598108 5_4:-8300899 Msa0835020:CDS
GGAAAGCCACAGGAAAAGAC+AGG 0.599029 5_4:-8300889 Msa0835020:CDS
TCTGCTGCAACCCTTATGCA+TGG 0.600193 5_4:-8298619 Msa0835020:three_prime_UTR
TGCAGTCGAAGGAAAACGAA+AGG 0.603800 5_4:+8298941 Msa0835010:CDS
AGATTCATTAATGCAGTCGA+AGG 0.607766 5_4:+8298930 Msa0835010:CDS
CTCAATGATGATCCTAGCCA+AGG 0.611417 5_4:-8300737 Msa0835020:CDS
TACTTATTATTAGTACTCAG+TGG 0.611777 5_4:+8299313 None:intergenic
CAAGTTACAAGATGTTTCAG+TGG 0.612949 5_4:-8299710 Msa0835020:three_prime_UTR
CGAAGGACAAGGAGGAAAGA+GGG 0.614265 5_4:-8300546 Msa0835020:CDS
AAATTTGAGTAGGATGAACA+AGG 0.615587 5_4:+8299918 None:intergenic
CTATAAAAGTGATATCATCC+GGG 0.616117 5_4:+8299466 None:intergenic
TATCGAGTACAATCTCAACT+TGG 0.616686 5_4:-8299968 Msa0835020:CDS
GCAAATGATTCCGAAGGACA+AGG 0.617621 5_4:-8300557 Msa0835020:CDS
AGAGTATTTCGGGAGAGCAA+TGG 0.619871 5_4:-8298690 Msa0835020:three_prime_UTR
CATGTCATGGGAGAGCCAGA+AGG 0.622804 5_4:+8300349 None:intergenic
GAGAAGGCAAATGATTCCGA+AGG 0.623623 5_4:-8300563 Msa0835020:CDS
ATGTCACCTTATTCAGGACA+AGG 0.624913 5_4:-8299849 Msa0835020:CDS
GCTGCTGCACAAGTTGGTCA+AGG 0.626016 5_4:+8298826 Msa0835010:CDS
ACATAGAAATATAGAATGGG+AGG 0.627145 5_4:-8301843 Msa0835020:exon
GGTACTGTCACAAATTTCCA+TGG 0.628747 5_4:+8298228 Msa0835010:CDS
AGAGGGTTAGAGCTAATGAT+GGG 0.630099 5_4:-8300529 Msa0835020:CDS
TGAACCTATCTCCACCCCAA+AGG 0.632778 5_4:+8302096 None:intergenic
GGTCAAATCCAGCCATAGGA+GGG 0.633856 5_4:+8300399 None:intergenic
TTTCTGTCTAGTGCAAATGG+AGG 0.640935 5_4:+8299552 None:intergenic
GACATGCAACCAATTTGGCT+AGG 0.642381 5_4:+8299867 None:intergenic
TCTAAATCAAGACATAGTCA+AGG 0.644103 5_4:+8297945 Msa0835010:intron
GACCTACCAGGTAACTCCCA+AGG 0.644578 5_4:+8301687 None:intergenic
CAGATGATTTGATATCTCCA+GGG 0.645408 5_4:-8298018 Msa0835020:three_prime_UTR
TGGAGATATCAAATCATCTG+AGG 0.646682 5_4:+8298021 Msa0835010:CDS
ACAGTCTTAAACTTACAAGC+CGG 0.651144 5_4:-8298389 Msa0835020:three_prime_UTR
CTTGGCTAGGATCATCATTG+AGG 0.653192 5_4:+8300738 None:intergenic
AGAGTTAAATGACACTTCAA+CGG 0.653873 5_4:+8302015 None:intergenic
TCTGAGGATCCCATATACAA+AGG 0.659738 5_4:+8298037 Msa0835010:CDS
TATGCATGGATCCTTGAACA+TGG 0.660343 5_4:-8298605 Msa0835020:three_prime_UTR
ACATACACGGATTTCTGAGA+CGG 0.664223 5_4:-8299628 Msa0835020:three_prime_UTR
ATATGTTATAACAGGAACCC+CGG 0.665430 5_4:-8298532 Msa0835020:three_prime_UTR
CACTAGTCTTGAATTCTCTG+AGG 0.665482 5_4:+8298999 Msa0835010:CDS
CAGGCAAGTCAACTATTGAG+TGG 0.665687 5_4:-8300467 Msa0835020:CDS
ACTAGCAGGACTATTCTCAA+GGG 0.665974 5_4:-8300034 Msa0835020:intron
ATGCAAGAAGACTACATACA+CGG 0.667220 5_4:-8299641 Msa0835020:three_prime_UTR
TTCCGCGACACATCAACTCG+AGG 0.668844 5_4:-8299168 Msa0835020:three_prime_UTR
AACCTCGAGTTGATGTGTCG+CGG 0.672079 5_4:+8299166 Msa0835010:CDS
AGCCACAGGAAAAGACAGGA+AGG 0.673089 5_4:-8300885 Msa0835020:CDS
GTAACCTGTGACAGTCTCAG+TGG 0.678126 5_4:+8300835 None:intergenic
TCAAACACAGCCGGATACGT+AGG 0.678958 5_4:+8298473 Msa0835010:intron
ACAGCCATGTAGAGCAACCA+CGG 0.689758 5_4:-8298297 Msa0835020:three_prime_UTR
TGATCCTAGCCAAGGCTCGG+AGG 0.696143 5_4:-8300729 Msa0835020:intron
TCGCCAATTCGGCTACACCG+TGG 0.698242 5_4:+8298280 Msa0835010:CDS
TTGGAACCTAAGAAGAGACG+AGG 0.710005 5_4:-8298766 Msa0835020:three_prime_UTR
CTACGCATCAGACTGCAGAG+TGG 0.715113 5_4:-8298414 Msa0835020:three_prime_UTR
AATGATTCCGAAGGACAAGG+AGG 0.715890 5_4:-8300554 Msa0835020:CDS
TGATATTGTTGTGACTTGTG+AGG 0.758451 5_4:+8299143 Msa0835010:CDS
GGATGGAAACGAAAACCTGG+AGG 0.767680 5_4:+8301810 None:intergenic
AGTTACAAGATGTTTCAGTG+GGG 0.791907 5_4:-8299708 Msa0835020:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCCATTATTTAATTTTAA+GGG + chr5_4:8298973-8298992 Msa0835010:CDS 10.0%
!!! TTTTCCATTATTTAATTTTA+AGG + chr5_4:8298974-8298993 Msa0835010:CDS 10.0%
!!! TAGACAAAAGTTTTTATTTT+TGG - chr5_4:8298216-8298235 Msa0835020:three_prime_UTR 15.0%
!!! ATTAACTTTTGAAAACTTTT+AGG - chr5_4:8298694-8298713 Msa0835020:three_prime_UTR 15.0%
!! TAACCCTTAAAATTAAATAA+TGG - chr5_4:8298967-8298986 Msa0835020:three_prime_UTR 15.0%
!! CATAAAAATAGCTTATATAA+TGG - chr5_4:8300793-8300812 Msa0835020:CDS 15.0%
!! TAATGAATATATGTTATAAC+AGG - chr5_4:8301651-8301670 Msa0835020:intron 15.0%
!!! TTTGGTTTATTTTAACTTCT+AGG - chr5_4:8297955-8297974 Msa0835020:three_prime_UTR 20.0%
!!! AAACTGTTTCTTTTTTTTCT+TGG - chr5_4:8298002-8298021 Msa0835020:three_prime_UTR 20.0%
!!! TTGTTTTAATACAATGATTC+TGG - chr5_4:8298136-8298155 Msa0835020:intron 20.0%
!!! TTTTTGGATTTTTCAGATTA+TGG - chr5_4:8298232-8298251 Msa0835020:three_prime_UTR 20.0%
!!! AAGTGAAACTGAAAATATTT+TGG + chr5_4:8298292-8298311 Msa0835010:CDS 20.0%
!!! TTTTGGTTTTAATAGTAGTA+AGG - chr5_4:8298324-8298343 Msa0835020:three_prime_UTR 20.0%
!! AATTTGTAGAATTCAATAAC+AGG + chr5_4:8298480-8298499 Msa0835010:intron 20.0%
!!! TAATATGTTTTCTTTAGAGT+TGG - chr5_4:8299081-8299100 Msa0835020:three_prime_UTR 20.0%
!!! AATATGTTTTCTTTAGAGTT+GGG - chr5_4:8299082-8299101 Msa0835020:three_prime_UTR 20.0%
!!! TCTCATTCTTTTTAATAACT+CGG + chr5_4:8299612-8299631 None:intergenic 20.0%
!! AGTTATTAAAAAGAATGAGA+AGG - chr5_4:8299612-8299631 Msa0835020:three_prime_UTR 20.0%
!! TCTAACATAAAGTTAGAATT+TGG - chr5_4:8299931-8299950 Msa0835020:CDS 20.0%
!! TGTAATTTATTATGTTGTGT+AGG - chr5_4:8300699-8300718 Msa0835020:intron 20.0%
!! ATTCATCAAATAAAAGACTA+AGG - chr5_4:8300947-8300966 Msa0835020:CDS 20.0%
!! TTCATCAAATAAAAGACTAA+GGG - chr5_4:8300948-8300967 Msa0835020:CDS 20.0%
!! AATTAAAATTAACCTAGAGA+TGG - chr5_4:8302073-8302092 Msa0835020:five_prime_UTR 20.0%
!! ATTCTTATAACCTTTGTATA+TGG - chr5_4:8302144-8302163 Msa0835020:five_prime_UTR 20.0%
!! TTCTTATAACCTTTGTATAT+GGG - chr5_4:8302145-8302164 Msa0835020:five_prime_UTR 20.0%
!!! TGTGTCAATGAATATTTTTA+TGG + chr5_4:8302211-8302230 None:intergenic 20.0%
! AAAATAAACCAAAGAGAAAG+TGG + chr5_4:8297948-8297967 Msa0835010:intron 25.0%
!!! TTTGGTACATTTTTTCCTTT+GGG - chr5_4:8298080-8298099 Msa0835020:three_prime_UTR 25.0%
!!! CACTTGTGTTTTTTTGTTTT+TGG - chr5_4:8298307-8298326 Msa0835020:three_prime_UTR 25.0%
! AGGAACATAGAAATATAGAA+TGG - chr5_4:8298344-8298363 Msa0835020:three_prime_UTR 25.0%
! GGAACATAGAAATATAGAAT+GGG - chr5_4:8298345-8298364 Msa0835020:three_prime_UTR 25.0%
! TTACCTAAAAAGAAAAGTTG+AGG - chr5_4:8298428-8298447 Msa0835020:three_prime_UTR 25.0%
! TACCTAAAAAGAAAAGTTGA+GGG - chr5_4:8298429-8298448 Msa0835020:three_prime_UTR 25.0%
! AATTCTACAAATTTGATCCT+TGG - chr5_4:8298487-8298506 Msa0835020:three_prime_UTR 25.0%
! ATTCTACAAATTTGATCCTT+GGG - chr5_4:8298488-8298507 Msa0835020:three_prime_UTR 25.0%
! ACACGATTAATCACAAAATT+CGG + chr5_4:8299040-8299059 Msa0835010:CDS 25.0%
! TTTAAGAGAACTCTAATTTG+TGG - chr5_4:8299149-8299168 Msa0835020:three_prime_UTR 25.0%
!! TTAAGAGAACTCTAATTTGT+GGG - chr5_4:8299150-8299169 Msa0835020:three_prime_UTR 25.0%
!!! ATCCTACTCAAATTTTAATG+CGG - chr5_4:8300281-8300300 Msa0835020:intron 25.0%
!!! CTTTGTTTTCAGAATTGATT+TGG + chr5_4:8300423-8300442 None:intergenic 25.0%
!! ATCAATTCTGAAAACAAAGA+AGG - chr5_4:8300424-8300443 Msa0835020:CDS 25.0%
! AGTTAAACAAAAGATGTGAA+TGG - chr5_4:8300523-8300542 Msa0835020:CDS 25.0%
! TCTATAAAAGTGATATCATC+CGG + chr5_4:8300729-8300748 None:intergenic 25.0%
! TTATAGATTTCATCCGAATT+TGG - chr5_4:8300742-8300761 Msa0835020:CDS 25.0%
!!! AATAGCTTATATAATGGATG+AGG - chr5_4:8300799-8300818 Msa0835020:CDS 25.0%
! ACTTATTATTAGTACTCAGT+GGG + chr5_4:8300880-8300899 None:intergenic 25.0%
! TACTTATTATTAGTACTCAG+TGG + chr5_4:8300881-8300900 None:intergenic 25.0%
!!! AAAATTGGATCTTGTTATTG+AGG + chr5_4:8301126-8301145 None:intergenic 25.0%
!!! TATTTGTTTTCTTTTGAACC+GGG + chr5_4:8301680-8301699 None:intergenic 25.0%
!!! GTATTTGTTTTCTTTTGAAC+CGG + chr5_4:8301681-8301700 None:intergenic 25.0%
!! CAAAGGTTATAAGAATGTTT+TGG + chr5_4:8302140-8302159 None:intergenic 25.0%
! TGTCTTGATTTAGATTTACA+AGG - chr5_4:8302255-8302274 Msa0835020:five_prime_UTR 25.0%
!! CAAAAGTGAAGGCTTTAAAA+AGG + chr5_4:8297981-8298000 Msa0835010:CDS 30.0%
GTGTGTAATATTCCTAAGTT+TGG - chr5_4:8298062-8298081 Msa0835020:three_prime_UTR 30.0%
GGAAAAAATGTACCAAACTT+AGG + chr5_4:8298077-8298096 Msa0835010:CDS 30.0%
!!! GTTTGGTACATTTTTTCCTT+TGG - chr5_4:8298079-8298098 Msa0835020:three_prime_UTR 30.0%
!!! TTGGTACATTTTTTCCTTTG+GGG - chr5_4:8298081-8298100 Msa0835020:intron 30.0%
AGAGTTAAATGACACTTCAA+CGG + chr5_4:8298179-8298198 Msa0835010:intron 30.0%
!! GGATTTTTCAGATTATGGAT+AGG - chr5_4:8298237-8298256 Msa0835020:three_prime_UTR 30.0%
ACATAGAAATATAGAATGGG+AGG - chr5_4:8298348-8298367 Msa0835020:three_prime_UTR 30.0%
ATATCCTATCAACTCTTCAT+CGG + chr5_4:8298409-8298428 Msa0835010:intron 30.0%
ACAACAAATAGGAGGATTTA+AGG - chr5_4:8298864-8298883 Msa0835020:three_prime_UTR 30.0%
!!! TTGTTTTGAGCTAACTACTA+AGG - chr5_4:8299123-8299142 Msa0835020:three_prime_UTR 30.0%
! TAAGAGAACTCTAATTTGTG+GGG - chr5_4:8299151-8299170 Msa0835020:three_prime_UTR 30.0%
! AACCATTCCATATCTCTTTT+TGG + chr5_4:8299211-8299230 None:intergenic 30.0%
TATTTGTCCTTGAACCATTT+GGG + chr5_4:8299261-8299280 None:intergenic 30.0%
TCTTCCACAGTAAAAAACTA+GGG + chr5_4:8299389-8299408 None:intergenic 30.0%
TTCTTATTGATCACTGTTGT+AGG - chr5_4:8299570-8299589 Msa0835020:three_prime_UTR 30.0%
TCTTATTGATCACTGTTGTA+GGG - chr5_4:8299571-8299590 Msa0835020:three_prime_UTR 30.0%
ACATTGCATTGGAAGTTAAT+AGG + chr5_4:8299772-8299791 None:intergenic 30.0%
AGAATCAAGAATCATGTCAT+GGG + chr5_4:8299857-8299876 None:intergenic 30.0%
AAGAATCAAGAATCATGTCA+TGG + chr5_4:8299858-8299877 None:intergenic 30.0%
CATGATTCTTGATTCTTCAA+AGG - chr5_4:8299861-8299880 Msa0835020:CDS 30.0%
AACTAATATCTACATGTGTC+TGG + chr5_4:8300104-8300123 None:intergenic 30.0%
AAATTTGAGTAGGATGAACA+AGG + chr5_4:8300276-8300295 None:intergenic 30.0%
TTCCGCATTAAAATTTGAGT+AGG + chr5_4:8300286-8300305 None:intergenic 30.0%
ATCTGATCATAGCATTCATA+AGG + chr5_4:8300384-8300403 None:intergenic 30.0%
ATGATCAGATTCATTCATTC+AGG - chr5_4:8300394-8300413 Msa0835020:CDS 30.0%
TCTGAAAACAAAGAAGGAAT+AGG - chr5_4:8300430-8300449 Msa0835020:CDS 30.0%
AAGTTACAAGATGTTTCAGT+GGG - chr5_4:8300482-8300501 Msa0835020:CDS 30.0%
ACTCAAAGACAGACATTAAA+AGG + chr5_4:8300591-8300610 None:intergenic 30.0%
CTATAAAAGTGATATCATCC+GGG + chr5_4:8300728-8300747 None:intergenic 30.0%
! CATCCGAATTTGGTTTATAT+CGG - chr5_4:8300752-8300771 Msa0835020:CDS 30.0%
TGACCGATATAAACCAAATT+CGG + chr5_4:8300758-8300777 None:intergenic 30.0%
TCATGATCAATTTACTCAGT+AGG + chr5_4:8300842-8300861 None:intergenic 30.0%
! ATAGCAATTTTACTCAACTG+AGG - chr5_4:8301215-8301234 Msa0835020:intron 30.0%
!! ATTTGTTTTCTTTTGAACCG+GGG + chr5_4:8301679-8301698 None:intergenic 30.0%
TTGAACACAAGATTTGATCT+CGG - chr5_4:8301737-8301756 Msa0835020:CDS 30.0%
TTAATCCCTTAAATTGTGAC+CGG + chr5_4:8301824-8301843 None:intergenic 30.0%
TTAATACATTCCTTCGAATG+AGG + chr5_4:8302055-8302074 None:intergenic 30.0%
AAAATCCATTGATGAAACAC+TGG + chr5_4:8302113-8302132 None:intergenic 30.0%
TCTAAATCAAGACATAGTCA+AGG + chr5_4:8302249-8302268 None:intergenic 30.0%
GAAACAGTTTGCAAAAGTGA+AGG + chr5_4:8297992-8298011 Msa0835010:CDS 35.0%
!! ACAATGATTCTGGAGCATAA+TGG - chr5_4:8298146-8298165 Msa0835020:intron 35.0%
ATGGATAGGTATAGTACTCT+TGG - chr5_4:8298251-8298270 Msa0835020:three_prime_UTR 35.0%
! GTCCCTCAACTTTTCTTTTT+AGG + chr5_4:8298434-8298453 Msa0835010:intron 35.0%
TCACATATTGATCAGTTGCA+TGG - chr5_4:8298537-8298556 Msa0835020:three_prime_UTR 35.0%
! AACTTTTAGGCTGTAAAAGC+CGG - chr5_4:8298707-8298726 Msa0835020:three_prime_UTR 35.0%
CTAAAATAATCCCGTTGAAC+CGG + chr5_4:8298729-8298748 Msa0835010:CDS 35.0%
TTTCCTGCCAAAAAGAGATA+TGG - chr5_4:8299201-8299220 Msa0835020:three_prime_UTR 35.0%
!! ATTCCATATCTCTTTTTGGC+AGG + chr5_4:8299207-8299226 None:intergenic 35.0%
TGCCAAAAAGAGATATGGAA+TGG - chr5_4:8299206-8299225 Msa0835020:three_prime_UTR 35.0%
! AATGGTTTTTCTTCTGTCCA+CGG - chr5_4:8299224-8299243 Msa0835020:three_prime_UTR 35.0%
CTATTTGTCCTTGAACCATT+TGG + chr5_4:8299262-8299281 None:intergenic 35.0%
AGTAAAAAACTAGGGTCTTG+CGG + chr5_4:8299381-8299400 None:intergenic 35.0%
!!! AAGACCCTAGTTTTTTACTG+TGG - chr5_4:8299382-8299401 Msa0835020:three_prime_UTR 35.0%
CTCTTCCACAGTAAAAAACT+AGG + chr5_4:8299390-8299409 None:intergenic 35.0%
TTTAGGTGATCGAACCAATT+GGG - chr5_4:8299414-8299433 Msa0835020:three_prime_UTR 35.0%
ATATTCATGCATGACCCAAT+TGG + chr5_4:8299431-8299450 None:intergenic 35.0%
AGCAATTCCATTTCAACCAA+TGG - chr5_4:8299685-8299704 Msa0835020:three_prime_UTR 35.0%
GCAATTCCATTTCAACCAAT+GGG - chr5_4:8299686-8299705 Msa0835020:three_prime_UTR 35.0%
TATCGAGTACAATCTCAACT+TGG - chr5_4:8300223-8300242 Msa0835020:intron 35.0%
AAACTTCCTTGTCCTGAATA+AGG + chr5_4:8300351-8300370 None:intergenic 35.0%
CAAGTTACAAGATGTTTCAG+TGG - chr5_4:8300481-8300500 Msa0835020:CDS 35.0%
AGTTACAAGATGTTTCAGTG+GGG - chr5_4:8300483-8300502 Msa0835020:CDS 35.0%
ATGCAAGAAGACTACATACA+CGG - chr5_4:8300550-8300569 Msa0835020:CDS 35.0%
TAGTTTCTGTCTAGTGCAAA+TGG + chr5_4:8300645-8300664 None:intergenic 35.0%
ATTATGTTGTGTAGGTTTCC+CGG - chr5_4:8300707-8300726 Msa0835020:intron 35.0%
TATATCGGTCATTGTATGTG+TGG - chr5_4:8300767-8300786 Msa0835020:CDS 35.0%
GTCTATTCAATTCCATGAGA+AGG - chr5_4:8300993-8301012 Msa0835020:CDS 35.0%
! TGATATTGTTGTGACTTGTG+AGG + chr5_4:8301051-8301070 None:intergenic 35.0%
!! TGCTTTAAAGAGTTTAGAGC+TGG + chr5_4:8301077-8301096 None:intergenic 35.0%
TTGAGGAAGTTGAAGAACTT+GGG + chr5_4:8301109-8301128 None:intergenic 35.0%
ATTGAGGAAGTTGAAGAACT+TGG + chr5_4:8301110-8301129 None:intergenic 35.0%
TGTGGAAACAGTTGCAAAAT+TGG + chr5_4:8301141-8301160 None:intergenic 35.0%
AAAGATGCAAAAGCAGCAAA+AGG - chr5_4:8301164-8301183 Msa0835020:intron 35.0%
AGATTCATTAATGCAGTCGA+AGG + chr5_4:8301264-8301283 None:intergenic 35.0%
!! GTCAGTTTTAACACTCGATA+AGG - chr5_4:8301316-8301335 Msa0835020:intron 35.0%
TAGAGCTTCATGAAGATGAT+CGG - chr5_4:8301478-8301497 Msa0835020:intron 35.0%
!! AAGATGATCGGAGAGTATTT+CGG - chr5_4:8301490-8301509 Msa0835020:intron 35.0%
ATATGTTATAACAGGAACCC+CGG - chr5_4:8301659-8301678 Msa0835020:intron 35.0%
ACAGTCTTAAACTTACAAGC+CGG - chr5_4:8301802-8301821 Msa0835020:CDS 35.0%
! CTGTTTGAGATCAGAAATTC+AGG + chr5_4:8301878-8301897 None:intergenic 35.0%
TGGCAGCAATATGTAAAAGT+TGG + chr5_4:8301946-8301965 None:intergenic 35.0%
! ACTTTTACATATTGCTGCCA+TGG - chr5_4:8301946-8301965 Msa0835020:five_prime_UTR 35.0%
! ATATCGCTTCGGTATTGAAT+TGG + chr5_4:8302027-8302046 None:intergenic 35.0%
ATGAGGATCTTATATCGCTT+CGG + chr5_4:8302038-8302057 None:intergenic 35.0%
GATATAAGATCCTCATTCGA+AGG - chr5_4:8302042-8302061 Msa0835020:five_prime_UTR 35.0%
ACTAACCAGTGTTTCATCAA+TGG - chr5_4:8302105-8302124 Msa0835020:five_prime_UTR 35.0%
TGGAGATATCAAATCATCTG+AGG + chr5_4:8302173-8302192 None:intergenic 35.0%
TCAGATGATTTGATATCTCC+AGG - chr5_4:8302172-8302191 Msa0835020:five_prime_UTR 35.0%
CAGATGATTTGATATCTCCA+GGG - chr5_4:8302173-8302192 Msa0835020:five_prime_UTR 35.0%
ACCATTCACCACTTTCTCTT+TGG - chr5_4:8297937-8297956 Msa0835020:three_prime_UTR 40.0%
ACCAAAGAGAAAGTGGTGAA+TGG + chr5_4:8297941-8297960 Msa0835010:intron 40.0%
!!! GTACATTTTTTCCTTTGGGG+TGG - chr5_4:8298084-8298103 Msa0835020:intron 40.0%
GAAATTGAAGATGACCTACC+AGG + chr5_4:8298519-8298538 Msa0835010:intron 40.0%
ACGTAATGTAGCAGAGTGAA+TGG - chr5_4:8298831-8298850 Msa0835020:three_prime_UTR 40.0%
GAGCTCAAAGCACAACAAAT+AGG - chr5_4:8298853-8298872 Msa0835020:three_prime_UTR 40.0%
CTCAAAGCACAACAAATAGG+AGG - chr5_4:8298856-8298875 Msa0835020:three_prime_UTR 40.0%
! ATAGGAGGATTTAAGGTGTG+AGG - chr5_4:8298871-8298890 Msa0835020:three_prime_UTR 40.0%
! TAGGAGGATTTAAGGTGTGA+GGG - chr5_4:8298872-8298891 Msa0835020:three_prime_UTR 40.0%
! ATGGTTTTTCTTCTGTCCAC+GGG - chr5_4:8299225-8299244 Msa0835020:three_prime_UTR 40.0%
! TCAGTGGAAATGAATGGACT+AGG + chr5_4:8299343-8299362 None:intergenic 40.0%
ACAGTCTCAGTGGAAATGAA+TGG + chr5_4:8299349-8299368 None:intergenic 40.0%
!! CAATTGGTTCGATCACCTAA+AGG + chr5_4:8299415-8299434 None:intergenic 40.0%
CTTTAGGTGATCGAACCAAT+TGG - chr5_4:8299413-8299432 Msa0835020:three_prime_UTR 40.0%
AAGAGGGTTAGAGCTAATGA+TGG - chr5_4:8299661-8299680 Msa0835020:three_prime_UTR 40.0%
AGAGGGTTAGAGCTAATGAT+GGG - chr5_4:8299662-8299681 Msa0835020:three_prime_UTR 40.0%
ATACCAATCCTACAACCTTC+TGG - chr5_4:8299827-8299846 Msa0835020:CDS 40.0%
! TTTTTCCTCTTCCAACTAGC+AGG - chr5_4:8300143-8300162 Msa0835020:intron 40.0%
TTGAGAATAGTCCTGCTAGT+TGG + chr5_4:8300157-8300176 None:intergenic 40.0%
AACTAGCAGGACTATTCTCA+AGG - chr5_4:8300156-8300175 Msa0835020:intron 40.0%
ACTAGCAGGACTATTCTCAA+GGG - chr5_4:8300157-8300176 Msa0835020:intron 40.0%
GGGCAATTACAAGATGTTGT+TGG - chr5_4:8300177-8300196 Msa0835020:intron 40.0%
AAGGTGACATGCAACCAATT+TGG + chr5_4:8300332-8300351 None:intergenic 40.0%
ATGTCACCTTATTCAGGACA+AGG - chr5_4:8300342-8300361 Msa0835020:CDS 40.0%
TTCAGGACAAGGAAGTTTCA+TGG - chr5_4:8300353-8300372 Msa0835020:CDS 40.0%
! ACATACACGGATTTCTGAGA+CGG - chr5_4:8300563-8300582 Msa0835020:CDS 40.0%
TTCTGTCTAGTGCAAATGGA+GGG + chr5_4:8300641-8300660 None:intergenic 40.0%
TTTCTGTCTAGTGCAAATGG+AGG + chr5_4:8300642-8300661 None:intergenic 40.0%
! TGCTTTTGCATCTTTGCTTG+TGG + chr5_4:8301159-8301178 None:intergenic 40.0%
!! CACTAGTCTTGAATTCTCTG+AGG + chr5_4:8301195-8301214 None:intergenic 40.0%
ACTCTTCTGCATTGCTTGAT+TGG + chr5_4:8301298-8301317 None:intergenic 40.0%
! GTTTGAGCATGTTGTTTGCA+TGG - chr5_4:8301390-8301409 Msa0835020:intron 40.0%
TGCATGGTTGTGTTTGTGTT+TGG - chr5_4:8301406-8301425 Msa0835020:intron 40.0%
TCATCTTCATGAAGCTCTAC+AGG + chr5_4:8301477-8301496 None:intergenic 40.0%
!! AGATGATCGGAGAGTATTTC+GGG - chr5_4:8301491-8301510 Msa0835020:intron 40.0%
GTTCAAGGATCCATGCATAA+GGG + chr5_4:8301585-8301604 None:intergenic 40.0%
TGTTCAAGGATCCATGCATA+AGG + chr5_4:8301586-8301605 None:intergenic 40.0%
TATGCATGGATCCTTGAACA+TGG - chr5_4:8301586-8301605 Msa0835020:intron 40.0%
ATCAGTTAGAGCCATGTTCA+AGG + chr5_4:8301600-8301619 None:intergenic 40.0%
!! AACATGGCTCTAACTGATCT+TGG - chr5_4:8301602-8301621 Msa0835020:intron 40.0%
ATCTTGTGTTCAAACACAGC+CGG + chr5_4:8301730-8301749 None:intergenic 40.0%
CAAGATTTGATCTCGGAGTT+CGG - chr5_4:8301744-8301763 Msa0835020:CDS 40.0%
TACAAGCCGGTCACAATTTA+AGG - chr5_4:8301815-8301834 Msa0835020:CDS 40.0%
ACAAGCCGGTCACAATTTAA+GGG - chr5_4:8301816-8301835 Msa0835020:CDS 40.0%
GGTACTGTCACAAATTTCCA+TGG + chr5_4:8301966-8301985 None:intergenic 40.0%
TCTGAGGATCCCATATACAA+AGG + chr5_4:8302157-8302176 None:intergenic 40.0%
! TATGGAGAAATTGATAGCCC+TGG + chr5_4:8302193-8302212 None:intergenic 40.0%
!!! TTTTCCTTTGGGGTGGAGAT+AGG - chr5_4:8298091-8298110 Msa0835020:intron 45.0%
GTTGGATGGAAACGAAAACC+TGG + chr5_4:8298387-8298406 Msa0835010:intron 45.0%
! TCAACTCTTCATCGGTTGGA+TGG + chr5_4:8298401-8298420 Msa0835010:intron 45.0%
CCTATCAACTCTTCATCGGT+TGG + chr5_4:8298405-8298424 Msa0835010:intron 45.0%
! CCAACCGATGAAGAGTTGAT+AGG - chr5_4:8298402-8298421 Msa0835020:three_prime_UTR 45.0%
TTTGATCCTTGGGAGTTACC+TGG - chr5_4:8298498-8298517 Msa0835020:three_prime_UTR 45.0%
! AGGAGGATTTAAGGTGTGAG+GGG - chr5_4:8298873-8298892 Msa0835020:three_prime_UTR 45.0%
AAGCCTTGGAATACGGTTCA+GGG - chr5_4:8298898-8298917 Msa0835020:three_prime_UTR 45.0%
TACCTCAACCAGCCTATTGT+CGG - chr5_4:8298996-8299015 Msa0835020:three_prime_UTR 45.0%
GTGTCTACTTCTCCGACAAT+AGG + chr5_4:8299011-8299030 Msa0835010:CDS 45.0%
GTCGGAGAAGTAGACACTAT+TGG - chr5_4:8299014-8299033 Msa0835020:three_prime_UTR 45.0%
GCAAGTACCCAAATGGTTCA+AGG - chr5_4:8299251-8299270 Msa0835020:three_prime_UTR 45.0%
ACAAATAGAGCCACCAAAGC+TGG - chr5_4:8299274-8299293 Msa0835020:three_prime_UTR 45.0%
! AACCTTCCTGTCTTTTCCTG+TGG + chr5_4:8299311-8299330 None:intergenic 45.0%
ATTTCCACTGAGACTGTCAC+AGG - chr5_4:8299352-8299371 Msa0835020:three_prime_UTR 45.0%
TACTGTGGAAGAGCTCCTTT+AGG - chr5_4:8299397-8299416 Msa0835020:three_prime_UTR 45.0%
CTTGGCTAGGATCATCATTG+AGG + chr5_4:8299456-8299475 None:intergenic 45.0%
CTCAATGATGATCCTAGCCA+AGG - chr5_4:8299454-8299473 Msa0835020:three_prime_UTR 45.0%
GAGAAGGCAAATGATTCCGA+AGG - chr5_4:8299628-8299647 Msa0835020:three_prime_UTR 45.0%
GCAAATGATTCCGAAGGACA+AGG - chr5_4:8299634-8299653 Msa0835020:three_prime_UTR 45.0%
AATGATTCCGAAGGACAAGG+AGG - chr5_4:8299637-8299656 Msa0835020:three_prime_UTR 45.0%
! CTCGTTCCCATTGGTTGAAA+TGG + chr5_4:8299695-8299714 None:intergenic 45.0%
CATTTCAACCAATGGGAACG+AGG - chr5_4:8299693-8299712 Msa0835020:three_prime_UTR 45.0%
ACAAGAAACCTCGTTCCCAT+TGG + chr5_4:8299704-8299723 None:intergenic 45.0%
CAGGCAAGTCAACTATTGAG+TGG - chr5_4:8299724-8299743 Msa0835020:three_prime_UTR 45.0%
GATTGGTATCAGAGGAAGCT+TGG + chr5_4:8299816-8299835 None:intergenic 45.0%
! GGTTGTAGGATTGGTATCAG+AGG + chr5_4:8299824-8299843 None:intergenic 45.0%
!! TCTACATGTGTCTGGTTCTG+CGG + chr5_4:8300096-8300115 None:intergenic 45.0%
ATAGTCCTGCTAGTTGGAAG+AGG + chr5_4:8300151-8300170 None:intergenic 45.0%
CTCGATAACTCATGTTGCTG+TGG + chr5_4:8300210-8300229 None:intergenic 45.0%
GACATGCAACCAATTTGGCT+AGG + chr5_4:8300327-8300346 None:intergenic 45.0%
GGTTGCATGTCACCTTATTC+AGG - chr5_4:8300336-8300355 Msa0835020:CDS 45.0%
CGGAACAATTTGCCTTCTCA+TGG + chr5_4:8301008-8301027 None:intergenic 45.0%
TGCAGTCGAAGGAAAACGAA+AGG + chr5_4:8301253-8301272 None:intergenic 45.0%
GGTCAAGGTAGACATGGAAA+AGG + chr5_4:8301353-8301372 None:intergenic 45.0%
!! CAAGTTGGTCAAGGTAGACA+TGG + chr5_4:8301359-8301378 None:intergenic 45.0%
AAACTAGCTGCTGCACAAGT+TGG + chr5_4:8301374-8301393 None:intergenic 45.0%
TTGGAACCTAAGAAGAGACG+AGG - chr5_4:8301425-8301444 Msa0835020:intron 45.0%
TCTCAACCTCGTCTCTTCTT+AGG + chr5_4:8301434-8301453 None:intergenic 45.0%
GAGACGAGGTTGAGACTTTA+TGG - chr5_4:8301439-8301458 Msa0835020:intron 45.0%
! AGAGTATTTCGGGAGAGCAA+TGG - chr5_4:8301501-8301520 Msa0835020:intron 45.0%
GCGACAGTTTCTTATGCTGT+TGG - chr5_4:8301523-8301542 Msa0835020:intron 45.0%
GCAAATAGTGCCTACGTATC+CGG - chr5_4:8301708-8301727 Msa0835020:CDS 45.0%
TGACAGTACCTAGAATGCCT+TGG - chr5_4:8301976-8301995 Msa0835020:five_prime_UTR 45.0%
AGTCTCTATGTGCCATCTCT+AGG + chr5_4:8302088-8302107 None:intergenic 45.0%
TGAACCTATCTCCACCCCAA+AGG + chr5_4:8298098-8298117 Msa0835010:intron 50.0%
GGATGGAAACGAAAACCTGG+AGG + chr5_4:8298384-8298403 Msa0835010:intron 50.0%
ATCCTTGGGAGTTACCTGGT+AGG - chr5_4:8298502-8298521 Msa0835020:three_prime_UTR 50.0%
! GGCTGTAAAAGCCGGTTCAA+CGG - chr5_4:8298715-8298734 Msa0835020:three_prime_UTR 50.0%
! GCTGTAAAAGCCGGTTCAAC+GGG - chr5_4:8298716-8298735 Msa0835020:three_prime_UTR 50.0%
AGGGGTGAAGCCTTGGAATA+CGG - chr5_4:8298891-8298910 Msa0835020:three_prime_UTR 50.0%
GAAGCCTTGGAATACGGTTC+AGG - chr5_4:8298897-8298916 Msa0835020:three_prime_UTR 50.0%
AGCCTTGGAATACGGTTCAG+GGG - chr5_4:8298899-8298918 Msa0835020:three_prime_UTR 50.0%
TACCCCTGAACCGTATTCCA+AGG + chr5_4:8298904-8298923 Msa0835010:CDS 50.0%
CTACTTCTCCGACAATAGGC+TGG + chr5_4:8299007-8299026 Msa0835010:CDS 50.0%
! TTTCCAGTAGCCAGCTTTGG+TGG + chr5_4:8299287-8299306 None:intergenic 50.0%
GGAAAGCCACAGGAAAAGAC+AGG - chr5_4:8299302-8299321 Msa0835020:three_prime_UTR 50.0%
AGCCACAGGAAAAGACAGGA+AGG - chr5_4:8299306-8299325 Msa0835020:three_prime_UTR 50.0%
GTAACCTGTGACAGTCTCAG+TGG + chr5_4:8299359-8299378 None:intergenic 50.0%
TGATGATCCTAGCCAAGGCT+CGG - chr5_4:8299459-8299478 Msa0835020:three_prime_UTR 50.0%
AGACATTTACCTCCGAGCCT+TGG + chr5_4:8299474-8299493 None:intergenic 50.0%
CCTCTTTCCTCCTTGTCCTT+CGG + chr5_4:8299647-8299666 None:intergenic 50.0%
CGAAGGACAAGGAGGAAAGA+GGG - chr5_4:8299645-8299664 Msa0835020:three_prime_UTR 50.0%
TGGGAACGAGGTTTCTTGTC+AGG - chr5_4:8299705-8299724 Msa0835020:three_prime_UTR 50.0%
CCATAGGAGGGACATTGCAT+TGG + chr5_4:8299783-8299802 None:intergenic 50.0%
CCAATGCAATGTCCCTCCTA+TGG - chr5_4:8299780-8299799 Msa0835020:CDS 50.0%
GGTCAAATCCAGCCATAGGA+GGG + chr5_4:8299795-8299814 None:intergenic 50.0%
TGGTCAAATCCAGCCATAGG+AGG + chr5_4:8299796-8299815 None:intergenic 50.0%
GCTTGGTCAAATCCAGCCAT+AGG + chr5_4:8299799-8299818 None:intergenic 50.0%
GAGCCAGAAGGTTGTAGGAT+TGG + chr5_4:8299833-8299852 None:intergenic 50.0%
!! CCAATTTGGCTAGGAGTGTC+AGG + chr5_4:8300318-8300337 None:intergenic 50.0%
CCTGACACTCCTAGCCAAAT+TGG - chr5_4:8300315-8300334 Msa0835020:intron 50.0%
!! AACCTCGAGTTGATGTGTCG+CGG + chr5_4:8301028-8301047 None:intergenic 50.0%
GGTAGACATGGAAAAGGCTC+TGG + chr5_4:8301347-8301366 None:intergenic 50.0%
ATGCATAAGGGTTGCAGCAG+AGG + chr5_4:8301573-8301592 None:intergenic 50.0%
TCTGCTGCAACCCTTATGCA+TGG - chr5_4:8301572-8301591 Msa0835020:intron 50.0%
TCAAACACAGCCGGATACGT+AGG + chr5_4:8301721-8301740 None:intergenic 50.0%
GTCTGATGCGTAGGCACAAT+TGG + chr5_4:8301770-8301789 None:intergenic 50.0%
TACGCATCAGACTGCAGAGT+GGG - chr5_4:8301778-8301797 Msa0835020:CDS 50.0%
ACAGCCATGTAGAGCAACCA+CGG - chr5_4:8301894-8301913 Msa0835020:five_prime_UTR 50.0%
TACACCGTGGTTGCTCTACA+TGG + chr5_4:8301901-8301920 None:intergenic 50.0%
GGAGCTGTTCTTCGCCAATT+CGG + chr5_4:8301925-8301944 None:intergenic 50.0%
! GCTTCGGTATTGAATTGGCC+AGG + chr5_4:8302022-8302041 None:intergenic 50.0%
GACCTACCAGGTAACTCCCA+AGG + chr5_4:8298507-8298526 Msa0835010:intron 55.0%
! CTCCGACAATAGGCTGGTTG+AGG + chr5_4:8299001-8299020 Msa0835010:CDS 55.0%
TTTGGGTACTTGCGATCCCG+TGG + chr5_4:8299244-8299263 None:intergenic 55.0%
CGGGATCGCAAGTACCCAAA+TGG - chr5_4:8299244-8299263 Msa0835020:three_prime_UTR 55.0%
GGCTTTCCAGTAGCCAGCTT+TGG + chr5_4:8299290-8299309 None:intergenic 55.0%
TTTACCTCCGAGCCTTGGCT+AGG + chr5_4:8299469-8299488 None:intergenic 55.0%
CCGAAGGACAAGGAGGAAAG+AGG - chr5_4:8299644-8299663 Msa0835020:three_prime_UTR 55.0%
TGCAATGTCCCTCCTATGGC+TGG - chr5_4:8299784-8299803 Msa0835020:CDS 55.0%
TGGGAGAGCCAGAAGGTTGT+AGG + chr5_4:8299838-8299857 None:intergenic 55.0%
CATGTCATGGGAGAGCCAGA+AGG + chr5_4:8299845-8299864 None:intergenic 55.0%
TTCCGCGACACATCAACTCG+AGG - chr5_4:8301023-8301042 Msa0835020:intron 55.0%
!! GCTGCTGCACAAGTTGGTCA+AGG + chr5_4:8301368-8301387 None:intergenic 55.0%
CACTCTGCAGTCTGATGCGT+AGG + chr5_4:8301779-8301798 None:intergenic 55.0%
CTACGCATCAGACTGCAGAG+TGG - chr5_4:8301777-8301796 Msa0835020:CDS 55.0%
CAACCACGGTGTAGCCGAAT+TGG - chr5_4:8301908-8301927 Msa0835020:five_prime_UTR 55.0%
! GTTGGGAGCCAAGGCATTCT+AGG + chr5_4:8301987-8302006 None:intergenic 55.0%
! TGCATGCAAGTTGGGAGCCA+AGG + chr5_4:8301996-8302015 None:intergenic 55.0%
! CCAGGCGTTGCATGCAAGTT+GGG + chr5_4:8302004-8302023 None:intergenic 55.0%
AGGTGTGAGGGGTGAAGCCT+TGG - chr5_4:8298884-8298903 Msa0835020:three_prime_UTR 60.0%
GAGCCACCAAAGCTGGCTAC+TGG - chr5_4:8299281-8299300 Msa0835020:three_prime_UTR 60.0%
GCTGGCTACTGGAAAGCCAC+AGG - chr5_4:8299292-8299311 Msa0835020:three_prime_UTR 60.0%
TGATCCTAGCCAAGGCTCGG+AGG - chr5_4:8299462-8299481 Msa0835020:three_prime_UTR 60.0%
TCGCCAATTCGGCTACACCG+TGG + chr5_4:8301914-8301933 None:intergenic 60.0%
CCCAACTTGCATGCAACGCC+TGG - chr5_4:8302001-8302020 Msa0835020:five_prime_UTR 60.0%
! GCCAGGCGTTGCATGCAAGT+TGG + chr5_4:8302005-8302024 None:intergenic 60.0%
GGAGGAGCTTCACTGCCTCC+AGG - chr5_4:8298366-8298385 Msa0835020:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8297933 8302280 8297933 ID=Msa0835020;Name=Msa0835020
chr5_4 mRNA 8297933 8302280 8297933 ID=Msa0835020-mRNA-1;Parent=Msa0835020;Name=Msa0835020-mRNA-1;_AED=0.12;_eAED=0.12;_QI=430|1|1|1|0.75|0.6|5|1755|335
chr5_4 exon 8297933 8298099 8297933 ID=Msa0835020-mRNA-1:exon:3691;Parent=Msa0835020-mRNA-1
chr5_4 exon 8298191 8300048 8298191 ID=Msa0835020-mRNA-1:exon:3690;Parent=Msa0835020-mRNA-1
chr5_4 exon 8300331 8300621 8300331 ID=Msa0835020-mRNA-1:exon:3689;Parent=Msa0835020-mRNA-1
chr5_4 exon 8300730 8301019 8300730 ID=Msa0835020-mRNA-1:exon:3688;Parent=Msa0835020-mRNA-1
chr5_4 exon 8301694 8302280 8301694 ID=Msa0835020-mRNA-1:exon:3687;Parent=Msa0835020-mRNA-1
chr5_4 five_prime_UTR 8301851 8302280 8301851 ID=Msa0835020-mRNA-1:five_prime_utr;Parent=Msa0835020-mRNA-1
chr5_4 CDS 8301694 8301850 8301694 ID=Msa0835020-mRNA-1:cds;Parent=Msa0835020-mRNA-1
chr5_4 CDS 8300730 8301019 8300730 ID=Msa0835020-mRNA-1:cds;Parent=Msa0835020-mRNA-1
chr5_4 CDS 8300331 8300621 8300331 ID=Msa0835020-mRNA-1:cds;Parent=Msa0835020-mRNA-1
chr5_4 CDS 8299779 8300048 8299779 ID=Msa0835020-mRNA-1:cds;Parent=Msa0835020-mRNA-1
chr5_4 three_prime_UTR 8298191 8299778 8298191 ID=Msa0835020-mRNA-1:three_prime_utr;Parent=Msa0835020-mRNA-1
chr5_4 three_prime_UTR 8297933 8298099 8297933 ID=Msa0835020-mRNA-1:three_prime_utr;Parent=Msa0835020-mRNA-1
Gene Sequence

>Msa0835020

ATGGGAGGAGCTTCACTGCCTCCAGGTTTTCGTTTCCATCCAACCGATGAAGAGTTGATAGGATATTACCTAAAAAGAAAAGTTGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTTATTGAATTCTACAAATTTGATCCTTGGGAGTTACCTGAGAAATCTTTCCTGCCAAAAAGAGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGTTCAAGGACAAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACAGGAAAAGACAGGAAGGTTGTGTGTGAGCCTAGTCCATTCATTTCCACTGAGACTGTCACAGGTTACCGCAAGACCCTAGTTTTTTACTGTGGAAGAGCTCCTTTAGGTGATCGAACCAATTGGGTCATGCATGAATATCGCCTCAATGATGATCCTAGCCAAGGCTCGGAGGGTGCTTTTGCTTTATGCCGAGTTATTAAAAAGAATGAGAAGGCAAATGATTCCGAAGGACAAGGAGGAAAGAGGGTTAGAGCTAATGATGGGAGCAATTCCATTTCAACCAATGGGAACGAGGTTTCTTGTCAGGCAAGTCAACTATTGAGTGGCAGTGAGAGTCATTATTCAAGTCCTATTAACTTCCAATGCAATGTCCCTCCTATGGCTGGATTTGACCAAGCTTCCTCTGATACCAATCCTACAACCTTCTGGCTCTCCCATGACATGATTCTTGATTCTTCAAAGGACTATTCTCAAGGGCAATTACAAGATGTTGTTGGATGTTTTCCACAGCAACATGAGTTATCGAGTACAATCTCAACTTGGCAATCATTTCAACATACTGAAATTTCACCTTGTTCATCCTACTCAAATTTTAATGCGGAAATTGAATTTCCTGACACTCCTAGCCAAATTGGTTGCATGTCACCTTATTCAGGACAAGGAAGTTTCATGGACTTGCCTTATGAATGCTATGATCAGATTCATTCATTCAGGAATCCAAATCAATTCTGA
Protein sequence

>Msa0835020

MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIEFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSEGAFALCRVIKKNEKANDSEGQGGKRVRANDGSNSISTNGNEVSCQASQLLSGSESHYSSPINFQCNVPPMAGFDQASSDTNPTTFWLSHDMILDSSKDYSQGQLQDVVGCFPQQHELSSTISTWQSFQHTEISPCSSYSNFNAEIEFPDTPSQIGCMSPYSGQGSFMDLPYECYDQIHSFRNPNQF*