Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713620 | XP_003611493.1 | 92.793 | 333 | 17 | 2 | 1 | 327 | 1 | 332 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713620 | sp|Q9T072|BH025_ARATH | 44.444 | 261 | 110 | 9 | 84 | 322 | 76 | 323 | 2.45e-52 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713620 | G7K125 | 92.793 | 333 | 17 | 2 | 1 | 327 | 1 | 332 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0713620 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713620 | Msa0754680 | 0.868870 | 4.733290e-66 | -8.615850e-47 |
| Msa0713620 | Msa0797350 | 0.843902 | 1.052903e-58 | -8.615850e-47 |
| Msa0713620 | Msa0834860 | 0.898790 | 3.756094e-77 | -8.615850e-47 |
| Msa0713620 | Msa1322580 | 0.824678 | 7.088314e-54 | -8.615850e-47 |
| Msa0372450 | Msa0713620 | 0.813072 | 3.079432e-51 | -8.615850e-47 |
| Msa0466650 | Msa0713620 | 0.812744 | 3.634208e-51 | -8.615850e-47 |
| Msa0255700 | Msa0713620 | 0.825238 | 5.227170e-54 | -8.615850e-47 |
| Msa0512820 | Msa0713620 | 0.818194 | 2.226317e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713620 | MtrunA17_Chr5g0400621 | 92.793 | 333 | 17 | 2 | 1 | 327 | 1 | 332 | 0.0 | 526 |
| Msa0713620 | MtrunA17_Chr5g0400641 | 74.522 | 157 | 39 | 1 | 154 | 310 | 1 | 156 | 9.65e-77 | 232 |
| Msa0713620 | MtrunA17_Chr2g0307131 | 43.799 | 379 | 136 | 15 | 1 | 327 | 1 | 354 | 6.21e-72 | 226 |
| Msa0713620 | MtrunA17_Chr4g0054581 | 41.562 | 397 | 142 | 14 | 1 | 327 | 1 | 377 | 2.04e-70 | 223 |
| Msa0713620 | MtrunA17_Chr4g0033291 | 47.319 | 317 | 123 | 12 | 36 | 325 | 26 | 325 | 7.07e-69 | 218 |
| Msa0713620 | MtrunA17_Chr6g0468491 | 46.483 | 327 | 123 | 14 | 36 | 327 | 3 | 312 | 7.09e-69 | 217 |
| Msa0713620 | MtrunA17_Chr4g0033281 | 44.282 | 341 | 159 | 12 | 1 | 327 | 1 | 324 | 8.35e-68 | 215 |
| Msa0713620 | MtrunA17_Chr4g0054621 | 44.013 | 309 | 137 | 8 | 43 | 327 | 44 | 340 | 6.03e-67 | 213 |
| Msa0713620 | MtrunA17_Chr4g0033391 | 45.659 | 311 | 129 | 10 | 36 | 325 | 26 | 317 | 8.93e-67 | 213 |
| Msa0713620 | MtrunA17_Chr2g0307141 | 41.534 | 378 | 150 | 13 | 1 | 327 | 1 | 358 | 7.50e-64 | 206 |
| Msa0713620 | MtrunA17_Chr2g0280161 | 52.432 | 185 | 86 | 1 | 138 | 322 | 166 | 348 | 7.31e-58 | 190 |
| Msa0713620 | MtrunA17_Chr6g0468461 | 42.857 | 343 | 129 | 15 | 1 | 306 | 1 | 313 | 1.33e-57 | 189 |
| Msa0713620 | MtrunA17_Chr5g0400661 | 40.449 | 356 | 152 | 13 | 6 | 324 | 2 | 334 | 2.75e-57 | 188 |
| Msa0713620 | MtrunA17_Chr4g0049331 | 51.323 | 189 | 87 | 2 | 134 | 320 | 118 | 303 | 2.53e-56 | 185 |
| Msa0713620 | MtrunA17_Chr7g0225901 | 52.764 | 199 | 78 | 7 | 112 | 306 | 56 | 242 | 8.83e-55 | 179 |
| Msa0713620 | MtrunA17_Chr4g0054571 | 46.350 | 274 | 114 | 9 | 77 | 322 | 59 | 327 | 2.53e-54 | 180 |
| Msa0713620 | MtrunA17_Chr4g0002801 | 43.028 | 251 | 122 | 6 | 86 | 325 | 91 | 331 | 4.04e-53 | 177 |
| Msa0713620 | MtrunA17_Chr2g0333621 | 44.351 | 239 | 114 | 6 | 96 | 324 | 82 | 311 | 7.01e-53 | 176 |
| Msa0713620 | MtrunA17_Chr2g0333641 | 40.893 | 291 | 138 | 10 | 42 | 319 | 33 | 302 | 1.07e-50 | 171 |
| Msa0713620 | MtrunA17_Chr4g0054561 | 40.433 | 277 | 150 | 7 | 51 | 319 | 51 | 320 | 2.76e-49 | 167 |
| Msa0713620 | MtrunA17_Chr4g0002781 | 42.913 | 254 | 124 | 6 | 85 | 325 | 105 | 350 | 3.23e-49 | 167 |
| Msa0713620 | MtrunA17_Chr8g0336681 | 41.631 | 233 | 125 | 3 | 96 | 320 | 102 | 331 | 8.06e-49 | 166 |
| Msa0713620 | MtrunA17_Chr5g0400671 | 36.749 | 283 | 147 | 6 | 69 | 324 | 46 | 323 | 1.90e-46 | 160 |
| Msa0713620 | MtrunA17_Chr4g0054551 | 38.267 | 277 | 156 | 7 | 51 | 319 | 51 | 320 | 1.35e-45 | 157 |
| Msa0713620 | MtrunA17_Chr2g0333611 | 44.199 | 181 | 90 | 4 | 144 | 320 | 38 | 211 | 1.22e-42 | 147 |
| Msa0713620 | MtrunA17_Chr7g0249811 | 44.324 | 185 | 93 | 1 | 136 | 320 | 150 | 324 | 2.17e-41 | 147 |
| Msa0713620 | MtrunA17_Chr2g0333541 | 42.784 | 194 | 106 | 4 | 134 | 323 | 75 | 267 | 9.33e-41 | 144 |
| Msa0713620 | MtrunA17_Chr7g0233441 | 48.993 | 149 | 65 | 1 | 174 | 322 | 57 | 194 | 9.93e-39 | 136 |
| Msa0713620 | MtrunA17_Chr4g0002831 | 44.706 | 170 | 81 | 4 | 154 | 322 | 45 | 202 | 3.55e-36 | 129 |
| Msa0713620 | MtrunA17_Chr4g0002851 | 49.664 | 149 | 56 | 2 | 174 | 322 | 65 | 194 | 5.27e-36 | 129 |
| Msa0713620 | MtrunA17_Chr1g0185621 | 29.121 | 182 | 121 | 2 | 111 | 285 | 436 | 616 | 2.19e-19 | 89.0 |
| Msa0713620 | MtrunA17_Chr7g0275821 | 29.412 | 170 | 108 | 3 | 151 | 319 | 252 | 410 | 3.57e-16 | 79.0 |
| Msa0713620 | MtrunA17_Chr8g0366751 | 36.913 | 149 | 82 | 4 | 151 | 288 | 462 | 609 | 4.93e-15 | 75.9 |
| Msa0713620 | MtrunA17_Chr5g0411341 | 30.337 | 178 | 93 | 5 | 151 | 308 | 493 | 659 | 1.12e-14 | 74.7 |
| Msa0713620 | MtrunA17_Chr1g0211081 | 31.925 | 213 | 123 | 10 | 38 | 231 | 191 | 400 | 5.15e-14 | 72.8 |
| Msa0713620 | MtrunA17_Chr8g0365711 | 26.842 | 190 | 111 | 5 | 124 | 301 | 225 | 398 | 1.80e-13 | 70.9 |
| Msa0713620 | MtrunA17_Chr8g0346151 | 26.061 | 165 | 113 | 3 | 101 | 260 | 231 | 391 | 7.54e-13 | 68.9 |
| Msa0713620 | MtrunA17_Chr7g0260841 | 50.000 | 56 | 28 | 0 | 151 | 206 | 355 | 410 | 4.88e-12 | 66.6 |
| Msa0713620 | MtrunA17_Chr8g0346161 | 32.759 | 116 | 72 | 3 | 151 | 263 | 291 | 403 | 8.21e-12 | 65.9 |
| Msa0713620 | MtrunA17_Chr0c01g0489461 | 26.347 | 167 | 101 | 4 | 152 | 296 | 197 | 363 | 1.17e-11 | 65.1 |
| Msa0713620 | MtrunA17_Chr3g0131691 | 28.571 | 175 | 112 | 5 | 134 | 298 | 283 | 454 | 4.07e-11 | 63.9 |
| Msa0713620 | MtrunA17_Chr2g0298751 | 26.543 | 162 | 107 | 3 | 152 | 301 | 53 | 214 | 6.34e-11 | 61.6 |
| Msa0713620 | MtrunA17_Chr7g0270871 | 44.156 | 77 | 42 | 1 | 128 | 203 | 188 | 264 | 9.66e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713620 | AT4G37850.2 | 44.444 | 261 | 110 | 9 | 84 | 322 | 76 | 323 | 2.49e-53 | 178 |
| Msa0713620 | AT4G37850.1 | 44.444 | 261 | 110 | 9 | 84 | 322 | 76 | 323 | 2.49e-53 | 178 |
| Msa0713620 | AT2G22760.1 | 35.404 | 322 | 164 | 10 | 15 | 324 | 6 | 295 | 2.87e-46 | 159 |
| Msa0713620 | AT2G22750.5 | 44.033 | 243 | 117 | 7 | 89 | 319 | 86 | 321 | 1.36e-44 | 155 |
| Msa0713620 | AT2G22750.2 | 44.033 | 243 | 117 | 7 | 89 | 319 | 62 | 297 | 1.39e-44 | 155 |
| Msa0713620 | AT2G22750.3 | 36.441 | 354 | 158 | 11 | 4 | 319 | 1 | 325 | 2.04e-44 | 155 |
| Msa0713620 | AT2G22750.1 | 44.033 | 243 | 116 | 8 | 89 | 319 | 62 | 296 | 4.15e-43 | 150 |
| Msa0713620 | AT2G22750.4 | 36.441 | 354 | 157 | 12 | 4 | 319 | 1 | 324 | 5.37e-43 | 151 |
| Msa0713620 | AT2G22770.1 | 36.508 | 315 | 154 | 9 | 43 | 322 | 14 | 317 | 2.44e-42 | 149 |
| Msa0713620 | AT2G22760.2 | 35.548 | 301 | 151 | 9 | 15 | 304 | 6 | 274 | 4.63e-42 | 147 |
| Msa0713620 | AT4G09820.1 | 34.109 | 129 | 61 | 2 | 152 | 280 | 364 | 468 | 9.13e-16 | 78.2 |
| Msa0713620 | AT2G46510.1 | 32.331 | 133 | 69 | 3 | 130 | 260 | 372 | 485 | 2.07e-15 | 77.4 |
| Msa0713620 | AT4G17880.1 | 31.250 | 160 | 104 | 3 | 151 | 308 | 416 | 571 | 4.85e-15 | 76.3 |
| Msa0713620 | AT3G61950.6 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 1.10e-14 | 73.9 |
| Msa0713620 | AT2G16910.1 | 32.258 | 155 | 84 | 4 | 152 | 285 | 315 | 469 | 1.26e-14 | 75.1 |
| Msa0713620 | AT5G46760.1 | 30.769 | 169 | 97 | 4 | 151 | 308 | 415 | 574 | 1.33e-14 | 75.1 |
| Msa0713620 | AT1G01260.1 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 1.97e-14 | 74.3 |
| Msa0713620 | AT1G01260.2 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 1.97e-14 | 74.3 |
| Msa0713620 | AT1G01260.3 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 1.97e-14 | 74.3 |
| Msa0713620 | AT1G32640.1 | 32.331 | 133 | 90 | 0 | 151 | 283 | 452 | 584 | 2.02e-14 | 74.3 |
| Msa0713620 | AT3G61950.3 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 2.12e-14 | 73.6 |
| Msa0713620 | AT3G61950.2 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 2.48e-14 | 72.8 |
| Msa0713620 | AT3G61950.1 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 3.57e-14 | 72.8 |
| Msa0713620 | AT2G28160.1 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.45e-12 | 67.8 |
| Msa0713620 | AT2G28160.2 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.61e-12 | 67.8 |
| Msa0713620 | AT1G63650.3 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.47e-12 | 68.2 |
| Msa0713620 | AT1G63650.1 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.47e-12 | 68.2 |
| Msa0713620 | AT1G63650.2 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.47e-12 | 68.2 |
| Msa0713620 | AT4G16430.1 | 50.000 | 58 | 29 | 0 | 151 | 208 | 320 | 377 | 2.94e-12 | 67.8 |
| Msa0713620 | AT4G30980.1 | 28.729 | 181 | 110 | 3 | 100 | 270 | 82 | 253 | 3.86e-12 | 66.6 |
| Msa0713620 | AT3G24140.1 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 3.91e-12 | 67.0 |
| Msa0713620 | AT3G24140.2 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 4.03e-12 | 67.0 |
| Msa0713620 | AT1G12860.2 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 5.89e-12 | 66.6 |
| Msa0713620 | AT4G30980.2 | 29.121 | 182 | 108 | 4 | 100 | 270 | 130 | 301 | 6.89e-12 | 66.2 |
| Msa0713620 | AT1G12860.1 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 8.18e-12 | 66.2 |
| Msa0713620 | AT5G41315.2 | 29.310 | 174 | 96 | 7 | 151 | 300 | 449 | 619 | 1.01e-11 | 66.2 |
| Msa0713620 | AT5G41315.3 | 29.310 | 174 | 96 | 7 | 151 | 300 | 446 | 616 | 1.10e-11 | 66.2 |
| Msa0713620 | AT5G41315.1 | 29.310 | 174 | 96 | 7 | 151 | 300 | 441 | 611 | 1.26e-11 | 65.9 |
| Msa0713620 | AT5G57150.2 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 7.20e-11 | 61.6 |
| Msa0713620 | AT5G57150.3 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 9.27e-11 | 61.2 |
| Msa0713620 | AT5G57150.5 | 26.220 | 164 | 101 | 4 | 152 | 301 | 55 | 212 | 9.37e-11 | 61.2 |
| Msa0713620 | AT5G57150.1 | 26.220 | 164 | 101 | 4 | 152 | 301 | 55 | 212 | 9.93e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCACGGTTTCTAGTTTC+TGG | 0.209923 | 5_1:-5873879 | None:intergenic |
| TTATCCTTTAGAAAAGAATT+TGG | 0.226485 | 5_1:+5874355 | Msa0713620:CDS |
| CTAATACCCTCAAACGTTCT+TGG | 0.234491 | 5_1:-5876950 | None:intergenic |
| AGTCTTGTTCTATGATAAAT+TGG | 0.239847 | 5_1:+5873920 | Msa0713620:five_prime_UTR |
| AATCACATCAATAGTCATTA+TGG | 0.256413 | 5_1:+5873989 | Msa0713620:exon |
| AATAACAGTGTCCTACCTTT+TGG | 0.259096 | 5_1:+5877215 | Msa0713620:CDS |
| TGAGAATATATACATATAAT+TGG | 0.261698 | 5_1:+5879309 | Msa0713620:three_prime_UTR |
| GCTCTAGCTGCTCTTATTCC+TGG | 0.270587 | 5_1:+5874638 | Msa0713620:CDS |
| TCTTTCTCTCTGCTATGATA+TGG | 0.318056 | 5_1:-5874586 | None:intergenic |
| TCAAATAATAGATTAAGATT+TGG | 0.321285 | 5_1:+5879365 | Msa0713620:three_prime_UTR |
| GTTCCAGCTATTGGAAGAAA+TGG | 0.343234 | 5_1:+5874184 | Msa0713620:intron |
| TGTTTCACAATTTAAGAGAT+TGG | 0.357280 | 5_1:-5873947 | None:intergenic |
| CAACGTGAACAAAACTTGTT+TGG | 0.357562 | 5_1:+5874233 | Msa0713620:CDS |
| CACATCCTTGTCCAAAACTT+TGG | 0.362806 | 5_1:-5877108 | None:intergenic |
| GGTAATTGTGTTTGTGAGAA+TGG | 0.369721 | 5_1:-5874467 | None:intergenic |
| TAATAGTCATGTTCAGTCTA+TGG | 0.373573 | 5_1:+5876989 | Msa0713620:CDS |
| ATTATTAGTTAATAAGTGTT+TGG | 0.401462 | 5_1:-5879098 | None:intergenic |
| ACATGTAGAAGCCAAAGTTT+TGG | 0.403189 | 5_1:+5877097 | Msa0713620:CDS |
| AACTAGCTGGTTATCTGATC+TGG | 0.407880 | 5_1:+5874043 | Msa0713620:CDS |
| GAGGTCTGTGGCTCATAATC+AGG | 0.412438 | 5_1:+5874562 | Msa0713620:CDS |
| ATTATTGTTGCATCTACCAT+TGG | 0.417026 | 5_1:-5879048 | None:intergenic |
| TTATTGTTGCATCTACCATT+GGG | 0.417570 | 5_1:-5879047 | None:intergenic |
| TGGACAAGGATGTGCTCATA+AGG | 0.429386 | 5_1:+5877117 | Msa0713620:CDS |
| TTTCTGGTCAATTTATTTCG+AGG | 0.441020 | 5_1:-5873863 | None:intergenic |
| ATGGACAAGGCTTCAGTCCT+AGG | 0.441208 | 5_1:+5876900 | Msa0713620:CDS |
| TTGGAAGAAATGGAAATAGA+TGG | 0.445551 | 5_1:+5874194 | Msa0713620:CDS |
| AAGATAACAAAGGTTGATGT+TGG | 0.458857 | 5_1:-5874313 | None:intergenic |
| CAATTACCTCAAAATAGAAA+AGG | 0.462121 | 5_1:+5874482 | Msa0713620:CDS |
| TAATACTATTCGTGTCATCT+TGG | 0.462966 | 5_1:+5879134 | Msa0713620:three_prime_UTR |
| TGATATAACCATCGTTGCTC+AGG | 0.464649 | 5_1:+5877250 | Msa0713620:CDS |
| GATCCACTGCCAAAAGCAAA+AGG | 0.466058 | 5_1:+5877139 | Msa0713620:CDS |
| TTCGTATCTTCTTTATAGCA+CGG | 0.491119 | 5_1:-5873893 | None:intergenic |
| TCTTATTCCTGGCTTGAAGA+AGG | 0.494711 | 5_1:+5874649 | Msa0713620:CDS |
| AGTGAGCATGATAAAATCAA+TGG | 0.502461 | 5_1:-5879195 | None:intergenic |
| TTCTTCAGAAGTCATTATGT+AGG | 0.503771 | 5_1:-5879158 | None:intergenic |
| ATTATGAGCCACAGACCTCT+TGG | 0.506300 | 5_1:-5874558 | None:intergenic |
| ATTGGGGCCTCATTCACGTT+AGG | 0.508391 | 5_1:-5879030 | None:intergenic |
| ATGATAAAATCAATGGTTCA+TGG | 0.513260 | 5_1:-5879188 | None:intergenic |
| CCATATACCTTCTTCAAGCC+AGG | 0.514414 | 5_1:-5874656 | None:intergenic |
| CGTACTTGATTGCATCTCCT+AGG | 0.518134 | 5_1:-5876917 | None:intergenic |
| AAGAGCTCCAAGAACGTTTG+AGG | 0.518931 | 5_1:+5876943 | Msa0713620:CDS |
| TCTTCAGAAGTCATTATGTA+GGG | 0.533712 | 5_1:-5879157 | None:intergenic |
| CAAACTCATCATCAACTAGC+TGG | 0.535900 | 5_1:+5874030 | Msa0713620:CDS |
| AATTACCTCAAAATAGAAAA+GGG | 0.536192 | 5_1:+5874483 | Msa0713620:CDS |
| TCATATGATATGATCATGGA+TGG | 0.547499 | 5_1:+5879070 | Msa0713620:three_prime_UTR |
| ATAATCATATGATATGATCA+TGG | 0.548325 | 5_1:+5879066 | Msa0713620:three_prime_UTR |
| AAAACTTTGGCTTCTACATG+TGG | 0.548591 | 5_1:-5877095 | None:intergenic |
| GAGCAACGATGGTTATATCA+AGG | 0.552186 | 5_1:-5877247 | None:intergenic |
| AGAGCTCCAAGAACGTTTGA+GGG | 0.570082 | 5_1:+5876944 | Msa0713620:CDS |
| TAATTGTCCTAACGTGAATG+AGG | 0.575007 | 5_1:+5879023 | Msa0713620:exon |
| TCAAGGATAGAATCCCCAAA+AGG | 0.575129 | 5_1:-5877230 | None:intergenic |
| ATCCACTGCCAAAAGCAAAA+GGG | 0.579077 | 5_1:+5877140 | Msa0713620:CDS |
| TATTGTTGCATCTACCATTG+GGG | 0.579173 | 5_1:-5879046 | None:intergenic |
| GATGAGTCAGAACTTAGTTG+TGG | 0.581816 | 5_1:-5877026 | None:intergenic |
| TAACGTGAATGAGGCCCCAA+TGG | 0.593805 | 5_1:+5879032 | Msa0713620:three_prime_UTR |
| TTTCTTTACCTGAGCAACGA+TGG | 0.599102 | 5_1:-5877258 | None:intergenic |
| ACTACAAAGTCACAAGGACA+AGG | 0.603785 | 5_1:+5874533 | Msa0713620:CDS |
| GGATAGAATCCCCAAAAGGT+AGG | 0.609941 | 5_1:-5877226 | None:intergenic |
| TCATGTTCAGTCTATGGTGA+CGG | 0.614450 | 5_1:+5876995 | Msa0713620:CDS |
| AAACTTTGGCTTCTACATGT+GGG | 0.634166 | 5_1:-5877094 | None:intergenic |
| TAGCTTTCAGAAGATAACAA+AGG | 0.638184 | 5_1:-5874323 | None:intergenic |
| ACGTTAGGACAATTATAACA+TGG | 0.639666 | 5_1:-5879015 | None:intergenic |
| CACAAGGACAAGGGACCAAG+AGG | 0.647237 | 5_1:+5874543 | Msa0713620:CDS |
| ACAAGGGACCAAGAGGTCTG+TGG | 0.659567 | 5_1:+5874550 | Msa0713620:CDS |
| GATGATTCTGAAGCTGCTAG+TGG | 0.660614 | 5_1:+5877056 | Msa0713620:CDS |
| CTACAAAGTCACAAGGACAA+GGG | 0.698526 | 5_1:+5874534 | Msa0713620:CDS |
| GTTGAAACTACAAAGTCACA+AGG | 0.718556 | 5_1:+5874527 | Msa0713620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATATATAAAAATT+GGG | - | chr5_1:5875127-5875146 | None:intergenic | 0.0% |
| !! | ATAAATAAATATATAAAAAT+TGG | - | chr5_1:5875128-5875147 | None:intergenic | 0.0% |
| !!! | TTAAAAAATAATTTTATATT+AGG | + | chr5_1:5875488-5875507 | Msa0713620:intron | 0.0% |
| !!! | TTTTTTTTCAATTTTTTGTT+TGG | - | chr5_1:5874386-5874405 | None:intergenic | 10.0% |
| !! | TCAATTTATTAAAAAGTTAA+AGG | - | chr5_1:5875030-5875049 | None:intergenic | 10.0% |
| !!! | TTTATTTATTGTTTTAGTTA+TGG | + | chr5_1:5875139-5875158 | Msa0713620:intron | 10.0% |
| !!! | ATCATTTTTAATTTAATAAC+AGG | + | chr5_1:5875659-5875678 | Msa0713620:intron | 10.0% |
| !!! | AAAATATTTTTCCAATATAA+AGG | + | chr5_1:5875887-5875906 | Msa0713620:intron | 10.0% |
| !!! | TATTTATCCATAATTATTTT+GGG | - | chr5_1:5875925-5875944 | None:intergenic | 10.0% |
| !!! | TTATTTATCCATAATTATTT+TGG | - | chr5_1:5875926-5875945 | None:intergenic | 10.0% |
| !! | AATTGAAATAATTATTATGT+TGG | - | chr5_1:5876084-5876103 | None:intergenic | 10.0% |
| !!! | CCAATTTTTTTTTTTTTTTA+CGG | - | chr5_1:5876788-5876807 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATTGGTATA+AGG | + | chr5_1:5876792-5876811 | Msa0713620:intron | 10.0% |
| !! | AAATTTAATAAAAGTTCATA+CGG | - | chr5_1:5877441-5877460 | None:intergenic | 10.0% |
| !! | TACATTTATAAATATTGAAA+AGG | - | chr5_1:5878767-5878786 | None:intergenic | 10.0% |
| !! | TACATTTATAAATATAGAAA+AGG | - | chr5_1:5878797-5878816 | None:intergenic | 10.0% |
| !!! | ATTTTTCATAGTTTAACTAA+CGG | - | chr5_1:5875290-5875309 | None:intergenic | 15.0% |
| !!! | AATACAAAATTTACTAGTTT+TGG | - | chr5_1:5875347-5875366 | None:intergenic | 15.0% |
| !! | ATTATTTCAATTTATGTACT+TGG | + | chr5_1:5876092-5876111 | Msa0713620:intron | 15.0% |
| !!! | TTTTCAACAAATTATATGTT+TGG | + | chr5_1:5876126-5876145 | Msa0713620:intron | 15.0% |
| !!! | ATTGATTTTAAATTGAAGTT+AGG | - | chr5_1:5876322-5876341 | None:intergenic | 15.0% |
| !! | CCGTAAAAAAAAAAAAAAAT+TGG | + | chr5_1:5876785-5876804 | Msa0713620:intron | 15.0% |
| !! | GATACTTTAAATGATTAAAA+AGG | - | chr5_1:5877320-5877339 | None:intergenic | 15.0% |
| !!! | GACTAAGATTATTATTATTT+TGG | - | chr5_1:5877588-5877607 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTGAATCTA+AGG | + | chr5_1:5877771-5877790 | Msa0713620:intron | 15.0% |
| !! | AAATTCCAAGAATTAAAAAA+TGG | + | chr5_1:5878094-5878113 | Msa0713620:intron | 15.0% |
| !!! | ATTTTTTGATAAAATGAAAC+AGG | + | chr5_1:5878157-5878176 | Msa0713620:intron | 15.0% |
| !!! | TTTTTTGATAAAATGAAACA+GGG | + | chr5_1:5878158-5878177 | Msa0713620:intron | 15.0% |
| !! | TTGATATGTGAAATTAATTA+AGG | + | chr5_1:5878410-5878429 | Msa0713620:intron | 15.0% |
| !! | AATTACAAAGAAATTAATCA+AGG | + | chr5_1:5878487-5878506 | Msa0713620:intron | 15.0% |
| !! | ATTATTAGTTAATAAGTGTT+TGG | - | chr5_1:5879101-5879120 | None:intergenic | 15.0% |
| !! | TGAGAATATATACATATAAT+TGG | + | chr5_1:5879309-5879328 | Msa0713620:three_prime_UTR | 15.0% |
| !! | TCAAATAATAGATTAAGATT+TGG | + | chr5_1:5879365-5879384 | Msa0713620:three_prime_UTR | 15.0% |
| !! | AATTATATGCACAAATGAAA+TGG | + | chr5_1:5874116-5874135 | Msa0713620:intron | 20.0% |
| !!! | TTATCCTTTAGAAAAGAATT+TGG | + | chr5_1:5874355-5874374 | Msa0713620:CDS | 20.0% |
| !!! | CTTGTTCTTTTTTGTATTTA+AGG | - | chr5_1:5874441-5874460 | None:intergenic | 20.0% |
| !! | CTTAAATACAAAAAAGAACA+AGG | + | chr5_1:5874439-5874458 | Msa0713620:CDS | 20.0% |
| !! | AATTACCTCAAAATAGAAAA+GGG | + | chr5_1:5874483-5874502 | Msa0713620:CDS | 20.0% |
| !!! | ATTTATTAAAAGTACTGAGA+TGG | + | chr5_1:5874704-5874723 | Msa0713620:intron | 20.0% |
| !!! | TTAAGCAAACATTTTTTTGA+AGG | - | chr5_1:5874760-5874779 | None:intergenic | 20.0% |
| !! | TGTACTAGTATTTATTATGT+AGG | + | chr5_1:5874836-5874855 | Msa0713620:intron | 20.0% |
| !! | GTACTAGTATTTATTATGTA+GGG | + | chr5_1:5874837-5874856 | Msa0713620:intron | 20.0% |
| !! | TTTATGAATCTTAAACAAAG+CGG | - | chr5_1:5874863-5874882 | None:intergenic | 20.0% |
| !! | TGGTTATAGTATAATTATCT+TGG | + | chr5_1:5875159-5875178 | Msa0713620:intron | 20.0% |
| !!! | TTTTTCATAGTTTAACTAAC+GGG | - | chr5_1:5875289-5875308 | None:intergenic | 20.0% |
| !! | TGTTATAAGAACATTGTTTA+AGG | - | chr5_1:5875443-5875462 | None:intergenic | 20.0% |
| !!! | GAATTGTTTTTCCTTTATAT+TGG | - | chr5_1:5875901-5875920 | None:intergenic | 20.0% |
| !!! | TAAGTTTGTTTGTTCTTTAT+TGG | - | chr5_1:5876364-5876383 | None:intergenic | 20.0% |
| !! | TTCGTATGATGTTAATTAAT+TGG | + | chr5_1:5876463-5876482 | Msa0713620:intron | 20.0% |
| !! | GATGTTAATTAATTGGTATA+AGG | + | chr5_1:5876470-5876489 | Msa0713620:intron | 20.0% |
| !! | TAATTAATTGGTATAAGGTT+TGG | + | chr5_1:5876475-5876494 | Msa0713620:intron | 20.0% |
| !!! | TCTTTTTTTCTATCCAATTA+CGG | - | chr5_1:5876518-5876537 | None:intergenic | 20.0% |
| !! | ACTAGTTAGCTATTAATTAT+AGG | + | chr5_1:5876826-5876845 | Msa0713620:intron | 20.0% |
| !! | GTAAAAAAAAAATCTACAGA+TGG | + | chr5_1:5876881-5876900 | Msa0713620:intron | 20.0% |
| !!! | GTATAAATCGATTTTCTAAA+AGG | + | chr5_1:5877485-5877504 | Msa0713620:intron | 20.0% |
| !!! | AAGTCTAATATACTCTTTTA+AGG | - | chr5_1:5877834-5877853 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCCTAAATTTCG+AGG | + | chr5_1:5877940-5877959 | Msa0713620:intron | 20.0% |
| !!! | TACTTCCATTTTTTAATTCT+TGG | - | chr5_1:5878102-5878121 | None:intergenic | 20.0% |
| !!! | TTTTTGATAAAATGAAACAG+GGG | + | chr5_1:5878159-5878178 | Msa0713620:intron | 20.0% |
| !! | TACATTTATGAAGATTGAAA+GGG | - | chr5_1:5878357-5878376 | None:intergenic | 20.0% |
| !! | ATACATTTATGAAGATTGAA+AGG | - | chr5_1:5878358-5878377 | None:intergenic | 20.0% |
| !!! | ATCATCAACTTTTTTTTACA+AGG | - | chr5_1:5878724-5878743 | None:intergenic | 20.0% |
| !! | TCTCAAATCAATTGAAAATT+TGG | - | chr5_1:5878839-5878858 | None:intergenic | 20.0% |
| !! | ATAATCATATGATATGATCA+TGG | + | chr5_1:5879066-5879085 | Msa0713620:three_prime_UTR | 20.0% |
| !!! | AGTCTTGTTCTATGATAAAT+TGG | + | chr5_1:5873920-5873939 | Msa0713620:five_prime_UTR | 25.0% |
| ! | TGTTTCACAATTTAAGAGAT+TGG | - | chr5_1:5873950-5873969 | None:intergenic | 25.0% |
| ! | AATCACATCAATAGTCATTA+TGG | + | chr5_1:5873989-5874008 | Msa0713620:exon | 25.0% |
| !!! | AGAAAGTATTTTTCAACAAG+AGG | + | chr5_1:5874283-5874302 | Msa0713620:CDS | 25.0% |
| !! | CTTTCCAAATTCTTTTCTAA+AGG | - | chr5_1:5874362-5874381 | None:intergenic | 25.0% |
| ! | CAATTACCTCAAAATAGAAA+AGG | + | chr5_1:5874482-5874501 | Msa0713620:CDS | 25.0% |
| ! | GGACATATTAATTTCATGTT+TGG | + | chr5_1:5874725-5874744 | Msa0713620:intron | 25.0% |
| ! | ATACTAGTACAAACTTAAAG+TGG | - | chr5_1:5874827-5874846 | None:intergenic | 25.0% |
| !! | TAATGCTAATTTGTACTCTT+AGG | - | chr5_1:5875104-5875123 | None:intergenic | 25.0% |
| !! | TTAATTTTCTTGAGTGAAAG+TGG | - | chr5_1:5875603-5875622 | None:intergenic | 25.0% |
| !! | GCTATCTGAATTAACTTTTA+AGG | + | chr5_1:5875633-5875652 | Msa0713620:intron | 25.0% |
| ! | CAATTCACCCAAAATAATTA+TGG | + | chr5_1:5875915-5875934 | Msa0713620:intron | 25.0% |
| !!! | TTATGTACTTGGTTTTGAAT+TGG | + | chr5_1:5876103-5876122 | Msa0713620:intron | 25.0% |
| ! | AAATTATATGTTTGGATCTG+CGG | + | chr5_1:5876134-5876153 | Msa0713620:intron | 25.0% |
| ! | AATAGCTAACATGACTATTT+AGG | - | chr5_1:5876445-5876464 | None:intergenic | 25.0% |
| !!! | TATTGGCTCTTTAAAATTGT+TGG | + | chr5_1:5876689-5876708 | Msa0713620:intron | 25.0% |
| !!! | ATTGGCTCTTTAAAATTGTT+GGG | + | chr5_1:5876690-5876709 | Msa0713620:intron | 25.0% |
| ! | TTAATAAAAGTTCATACGGT+TGG | - | chr5_1:5877437-5877456 | None:intergenic | 25.0% |
| !! | AGAAAATCGATTTATACCAT+CGG | - | chr5_1:5877482-5877501 | None:intergenic | 25.0% |
| !!! | TTGAGACTTTTGAAACTTAA+AGG | + | chr5_1:5877514-5877533 | Msa0713620:intron | 25.0% |
| ! | ACCTTGTACTAAAAATGATT+AGG | + | chr5_1:5877629-5877648 | Msa0713620:intron | 25.0% |
| !!! | ACCTAATCATTTTTAGTACA+AGG | - | chr5_1:5877633-5877652 | None:intergenic | 25.0% |
| ! | TTTAAAAACTGCTTGTGAAA+AGG | - | chr5_1:5878390-5878409 | None:intergenic | 25.0% |
| ! | ATGTGAAATTAATTAAGGAG+AGG | + | chr5_1:5878415-5878434 | Msa0713620:intron | 25.0% |
| !!! | GAGAGGTTTTATTTTGTATT+TGG | + | chr5_1:5878432-5878451 | Msa0713620:intron | 25.0% |
| !! | TTTTGTATTTGGAAACAAAG+AGG | + | chr5_1:5878443-5878462 | Msa0713620:intron | 25.0% |
| ! | TTTGTATTTGGAAACAAAGA+GGG | + | chr5_1:5878444-5878463 | Msa0713620:intron | 25.0% |
| !!! | ATGATTATTGATGACGTTTT+TGG | - | chr5_1:5878523-5878542 | None:intergenic | 25.0% |
| ! | AATCATTTGAGTGATTTGAA+TGG | + | chr5_1:5878537-5878556 | Msa0713620:intron | 25.0% |
| ! | ACTATTTCCCTTGAATTATT+TGG | + | chr5_1:5878876-5878895 | Msa0713620:intron | 25.0% |
| ! | CTATTTCCCTTGAATTATTT+GGG | + | chr5_1:5878877-5878896 | Msa0713620:intron | 25.0% |
| ! | TCATTTCCCAAATAATTCAA+GGG | - | chr5_1:5878886-5878905 | None:intergenic | 25.0% |
| ! | CTGCAAAAAAAAAAATCGTT+TGG | - | chr5_1:5878928-5878947 | None:intergenic | 25.0% |
| !!! | ACGATTTTTTTTTTTGCAGA+TGG | + | chr5_1:5878929-5878948 | Msa0713620:intron | 25.0% |
| !!! | CGATTTTTTTTTTTGCAGAT+GGG | + | chr5_1:5878930-5878949 | Msa0713620:intron | 25.0% |
| ! | ATGATAAAATCAATGGTTCA+TGG | - | chr5_1:5879191-5879210 | None:intergenic | 25.0% |
| TTCGTATCTTCTTTATAGCA+CGG | - | chr5_1:5873896-5873915 | None:intergenic | 30.0% | |
| TTGGAAGAAATGGAAATAGA+TGG | + | chr5_1:5874194-5874213 | Msa0713620:CDS | 30.0% | |
| !! | AAGATAACAAAGGTTGATGT+TGG | - | chr5_1:5874316-5874335 | None:intergenic | 30.0% |
| TAGCTTTCAGAAGATAACAA+AGG | - | chr5_1:5874326-5874345 | None:intergenic | 30.0% | |
| ! | AATGACCCTTTTCTATTTTG+AGG | - | chr5_1:5874491-5874510 | None:intergenic | 30.0% |
| ATCAATCAGATAGAACTTGT+CGG | - | chr5_1:5875758-5875777 | None:intergenic | 30.0% | |
| ! | TGGGTTAAAAGTTTTTCACA+TGG | + | chr5_1:5875848-5875867 | Msa0713620:intron | 30.0% |
| CAATCTAGACATCAATAAGA+TGG | - | chr5_1:5875950-5875969 | None:intergenic | 30.0% | |
| ! | ACGATGAATCAACACATTTT+TGG | + | chr5_1:5875990-5876009 | Msa0713620:intron | 30.0% |
| !! | GTACTACTCTATTTCTATCA+AGG | + | chr5_1:5876019-5876038 | Msa0713620:intron | 30.0% |
| GAGAAAAACTTACTTTCAAC+CGG | - | chr5_1:5876062-5876081 | None:intergenic | 30.0% | |
| ! | AAACTCAATTTTACATCTCC+AGG | + | chr5_1:5876386-5876405 | Msa0713620:intron | 30.0% |
| ! | AACTCAATTTTACATCTCCA+GGG | + | chr5_1:5876387-5876406 | Msa0713620:intron | 30.0% |
| ! | ACTATTTAGGTTTGGTTTCA+TGG | - | chr5_1:5876432-5876451 | None:intergenic | 30.0% |
| ! | CTAACATGACTATTTAGGTT+TGG | - | chr5_1:5876440-5876459 | None:intergenic | 30.0% |
| ! | TAATTGGTATAAGGTTTGGT+TGG | + | chr5_1:5876479-5876498 | Msa0713620:intron | 30.0% |
| !! | TCCAATTACGGATCATTTTT+GGG | - | chr5_1:5876506-5876525 | None:intergenic | 30.0% |
| ! | ATCCAATTACGGATCATTTT+TGG | - | chr5_1:5876507-5876526 | None:intergenic | 30.0% |
| TTGGATAGAAAAAAAGACTC+TGG | + | chr5_1:5876521-5876540 | Msa0713620:intron | 30.0% | |
| GGTTGTTAGAGTATGAAATT+TGG | + | chr5_1:5876595-5876614 | Msa0713620:intron | 30.0% | |
| ! | GTAGTCTTTTTCTCTTGTAT+TGG | + | chr5_1:5876672-5876691 | Msa0713620:intron | 30.0% |
| AGCTAGTGTTAATATTGAAG+GGG | - | chr5_1:5876721-5876740 | None:intergenic | 30.0% | |
| CAGCTAGTGTTAATATTGAA+GGG | - | chr5_1:5876722-5876741 | None:intergenic | 30.0% | |
| ACAGCTAGTGTTAATATTGA+AGG | - | chr5_1:5876723-5876742 | None:intergenic | 30.0% | |
| AAAAAATCTACAGATGGACA+AGG | + | chr5_1:5876887-5876906 | Msa0713620:intron | 30.0% | |
| TAATAGTCATGTTCAGTCTA+TGG | + | chr5_1:5876989-5877008 | Msa0713620:CDS | 30.0% | |
| ! | TTTTGGTCAAATGCATCTAA+AGG | - | chr5_1:5877571-5877590 | None:intergenic | 30.0% |
| ! | TTGAATCTAAGGTTCGAAAA+TGG | + | chr5_1:5877782-5877801 | Msa0713620:intron | 30.0% |
| AAACCTTAATTTAGACTGCT+TGG | + | chr5_1:5877971-5877990 | Msa0713620:intron | 30.0% | |
| AACCTTAATTTAGACTGCTT+GGG | + | chr5_1:5877972-5877991 | Msa0713620:intron | 30.0% | |
| TATTGAAAAGGACACAAGAA+GGG | - | chr5_1:5878755-5878774 | None:intergenic | 30.0% | |
| ATATTGAAAAGGACACAAGA+AGG | - | chr5_1:5878756-5878775 | None:intergenic | 30.0% | |
| TTGAAAATTTGGTTGTCGAA+AGG | - | chr5_1:5878828-5878847 | None:intergenic | 30.0% | |
| CTCATTTCCCAAATAATTCA+AGG | - | chr5_1:5878887-5878906 | None:intergenic | 30.0% | |
| CTTGAATTATTTGGGAAATG+AGG | + | chr5_1:5878885-5878904 | Msa0713620:intron | 30.0% | |
| !!! | TTTTTTTTTGCAGATGGGAA+CGG | + | chr5_1:5878935-5878954 | Msa0713620:intron | 30.0% |
| !! | CTTTTTCACAAGATCATTTC+TGG | - | chr5_1:5878973-5878992 | None:intergenic | 30.0% |
| ACGTTAGGACAATTATAACA+TGG | - | chr5_1:5879018-5879037 | None:intergenic | 30.0% | |
| TTATTGTTGCATCTACCATT+GGG | - | chr5_1:5879050-5879069 | None:intergenic | 30.0% | |
| ATTATTGTTGCATCTACCAT+TGG | - | chr5_1:5879051-5879070 | None:intergenic | 30.0% | |
| TCATATGATATGATCATGGA+TGG | + | chr5_1:5879070-5879089 | Msa0713620:three_prime_UTR | 30.0% | |
| TAATACTATTCGTGTCATCT+TGG | + | chr5_1:5879134-5879153 | Msa0713620:three_prime_UTR | 30.0% | |
| TCTTCAGAAGTCATTATGTA+GGG | - | chr5_1:5879160-5879179 | None:intergenic | 30.0% | |
| TTCTTCAGAAGTCATTATGT+AGG | - | chr5_1:5879161-5879180 | None:intergenic | 30.0% | |
| AGTGAGCATGATAAAATCAA+TGG | - | chr5_1:5879198-5879217 | None:intergenic | 30.0% | |
| !! | TTGTGTTTTGTTCCAGCTAT+TGG | + | chr5_1:5874175-5874194 | Msa0713620:intron | 35.0% |
| TTTCCATTTCTTCCAATAGC+TGG | - | chr5_1:5874190-5874209 | None:intergenic | 35.0% | |
| ! | CAACGTGAACAAAACTTGTT+TGG | + | chr5_1:5874233-5874252 | Msa0713620:CDS | 35.0% |
| GGTAATTGTGTTTGTGAGAA+TGG | - | chr5_1:5874470-5874489 | None:intergenic | 35.0% | |
| GTTGAAACTACAAAGTCACA+AGG | + | chr5_1:5874527-5874546 | Msa0713620:CDS | 35.0% | |
| TCTTTCTCTCTGCTATGATA+TGG | - | chr5_1:5874589-5874608 | None:intergenic | 35.0% | |
| TCGTAAATACTCATTCCTCA+AGG | + | chr5_1:5875555-5875574 | Msa0713620:intron | 35.0% | |
| TAGAACATCAAATGTTGCGT+GGG | + | chr5_1:5875829-5875848 | Msa0713620:intron | 35.0% | |
| GGATTATGTCGAATTTCAAC+CGG | + | chr5_1:5876040-5876059 | Msa0713620:intron | 35.0% | |
| TCCCAAAAATGATCCGTAAT+TGG | + | chr5_1:5876502-5876521 | Msa0713620:intron | 35.0% | |
| AAACTTTGCAGACAAGTATG+AGG | - | chr5_1:5876628-5876647 | None:intergenic | 35.0% | |
| ATACTTGTCTGCAAAGTTTC+TGG | + | chr5_1:5876629-5876648 | Msa0713620:intron | 35.0% | |
| TACTTGTCTGCAAAGTTTCT+GGG | + | chr5_1:5876630-5876649 | Msa0713620:intron | 35.0% | |
| ! | AAACTTTGGCTTCTACATGT+GGG | - | chr5_1:5877097-5877116 | None:intergenic | 35.0% |
| ! | AAAACTTTGGCTTCTACATG+TGG | - | chr5_1:5877098-5877117 | None:intergenic | 35.0% |
| ! | ACATGTAGAAGCCAAAGTTT+TGG | + | chr5_1:5877097-5877116 | Msa0713620:CDS | 35.0% |
| ! | GGGACTTTTGCTCAAAATAT+TGG | + | chr5_1:5877160-5877179 | Msa0713620:CDS | 35.0% |
| ! | AATAACAGTGTCCTACCTTT+TGG | + | chr5_1:5877215-5877234 | Msa0713620:CDS | 35.0% |
| ! | ATAACAGTGTCCTACCTTTT+GGG | + | chr5_1:5877216-5877235 | Msa0713620:CDS | 35.0% |
| TCGGGATTATTCTAATAGTG+CGG | - | chr5_1:5877398-5877417 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | + | chr5_1:5877524-5877543 | Msa0713620:intron | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | + | chr5_1:5877525-5877544 | Msa0713620:intron | 35.0% | |
| ATGATTAGGTAACTAAGCCA+TGG | + | chr5_1:5877643-5877662 | Msa0713620:intron | 35.0% | |
| TGATTAGGTAACTAAGCCAT+GGG | + | chr5_1:5877644-5877663 | Msa0713620:intron | 35.0% | |
| TCAATGAAGCCTCGAAATTT+AGG | - | chr5_1:5877952-5877971 | None:intergenic | 35.0% | |
| ACCTTAATTTAGACTGCTTG+GGG | + | chr5_1:5877973-5877992 | Msa0713620:intron | 35.0% | |
| ATTGAAAAGGACACAAGAAG+GGG | - | chr5_1:5878754-5878773 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCAGATGGGAAC+GGG | + | chr5_1:5878936-5878955 | Msa0713620:intron | 35.0% |
| TAATTGTCCTAACGTGAATG+AGG | + | chr5_1:5879023-5879042 | Msa0713620:exon | 35.0% | |
| TATTGTTGCATCTACCATTG+GGG | - | chr5_1:5879049-5879068 | None:intergenic | 35.0% | |
| ! | ATTTTATCATGCTCACTCTG+TGG | + | chr5_1:5879201-5879220 | Msa0713620:three_prime_UTR | 35.0% |
| !! | ATAGCACGGTTTCTAGTTTC+TGG | - | chr5_1:5873882-5873901 | None:intergenic | 40.0% |
| CAAACTCATCATCAACTAGC+TGG | + | chr5_1:5874030-5874049 | Msa0713620:CDS | 40.0% | |
| AACTAGCTGGTTATCTGATC+TGG | + | chr5_1:5874043-5874062 | Msa0713620:CDS | 40.0% | |
| GTTCCAGCTATTGGAAGAAA+TGG | + | chr5_1:5874184-5874203 | Msa0713620:intron | 40.0% | |
| ACTACAAAGTCACAAGGACA+AGG | + | chr5_1:5874533-5874552 | Msa0713620:CDS | 40.0% | |
| CTACAAAGTCACAAGGACAA+GGG | + | chr5_1:5874534-5874553 | Msa0713620:CDS | 40.0% | |
| ! | TCTTATTCCTGGCTTGAAGA+AGG | + | chr5_1:5874649-5874668 | Msa0713620:CDS | 40.0% |
| TGTTTCCTTAACTAGTGTCC+TGG | + | chr5_1:5875245-5875264 | Msa0713620:intron | 40.0% | |
| GTTTCCTTAACTAGTGTCCT+GGG | + | chr5_1:5875246-5875265 | Msa0713620:intron | 40.0% | |
| TTTCCTTAACTAGTGTCCTG+GGG | + | chr5_1:5875247-5875266 | Msa0713620:intron | 40.0% | |
| ! | ATTGAAGTTTGCTTGCCTTG+AGG | - | chr5_1:5875573-5875592 | None:intergenic | 40.0% |
| CTAGAACATCAAATGTTGCG+TGG | + | chr5_1:5875828-5875847 | Msa0713620:intron | 40.0% | |
| CCATCTTCTATGTCTGACAA+AGG | - | chr5_1:5876559-5876578 | None:intergenic | 40.0% | |
| CCTTTGTCAGACATAGAAGA+TGG | + | chr5_1:5876556-5876575 | Msa0713620:intron | 40.0% | |
| TAGAAGATGGAAGCTGTTGA+TGG | + | chr5_1:5876569-5876588 | Msa0713620:intron | 40.0% | |
| CTAATACCCTCAAACGTTCT+TGG | - | chr5_1:5876953-5876972 | None:intergenic | 40.0% | |
| TCATGTTCAGTCTATGGTGA+CGG | + | chr5_1:5876995-5877014 | Msa0713620:CDS | 40.0% | |
| GATGAGTCAGAACTTAGTTG+TGG | - | chr5_1:5877029-5877048 | None:intergenic | 40.0% | |
| !!! | AGAAGCCAAAGTTTTGGACA+AGG | + | chr5_1:5877103-5877122 | Msa0713620:CDS | 40.0% |
| CACATCCTTGTCCAAAACTT+TGG | - | chr5_1:5877111-5877130 | None:intergenic | 40.0% | |
| ATCCACTGCCAAAAGCAAAA+GGG | + | chr5_1:5877140-5877159 | Msa0713620:CDS | 40.0% | |
| ! | GCAAAAGTCCCTTTTGCTTT+TGG | - | chr5_1:5877151-5877170 | None:intergenic | 40.0% |
| ! | TAACAGTGTCCTACCTTTTG+GGG | + | chr5_1:5877217-5877236 | Msa0713620:CDS | 40.0% |
| TCAAGGATAGAATCCCCAAA+AGG | - | chr5_1:5877233-5877252 | None:intergenic | 40.0% | |
| GAGCAACGATGGTTATATCA+AGG | - | chr5_1:5877250-5877269 | None:intergenic | 40.0% | |
| TGATATAACCATCGTTGCTC+AGG | + | chr5_1:5877250-5877269 | Msa0713620:CDS | 40.0% | |
| TTTCTTTACCTGAGCAACGA+TGG | - | chr5_1:5877261-5877280 | None:intergenic | 40.0% | |
| ! | ATGCGATTTTCTTCATCCGA+TGG | + | chr5_1:5877463-5877482 | Msa0713620:intron | 40.0% |
| GATTAGGTAACTAAGCCATG+GGG | + | chr5_1:5877645-5877664 | Msa0713620:intron | 40.0% | |
| ! | TGCTTGGGGCATTTATTCAA+TGG | + | chr5_1:5877987-5878006 | Msa0713620:intron | 40.0% |
| TGAAACAGGGGAGTAAATAG+AGG | + | chr5_1:5878171-5878190 | Msa0713620:intron | 40.0% | |
| TGCTTGTGAAAAGGAGAACA+AGG | - | chr5_1:5878381-5878400 | None:intergenic | 40.0% | |
| TTGAAAAGGACACAAGAAGG+GGG | - | chr5_1:5878753-5878772 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGCAGATGGGAACG+GGG | + | chr5_1:5878937-5878956 | Msa0713620:intron | 40.0% |
| TCTTGTGAAAAAGCTACGTG+TGG | + | chr5_1:5878980-5878999 | Msa0713620:CDS | 40.0% | |
| ATTATGAGCCACAGACCTCT+TGG | - | chr5_1:5874561-5874580 | None:intergenic | 45.0% | |
| CCATATACCTTCTTCAAGCC+AGG | - | chr5_1:5874659-5874678 | None:intergenic | 45.0% | |
| ! | CCTGGCTTGAAGAAGGTATA+TGG | + | chr5_1:5874656-5874675 | Msa0713620:intron | 45.0% |
| TTCCTTAACTAGTGTCCTGG+GGG | + | chr5_1:5875248-5875267 | Msa0713620:intron | 45.0% | |
| TGAGCAACTAGAATTGACCC+TGG | - | chr5_1:5876407-5876426 | None:intergenic | 45.0% | |
| !! | GATGGAAGCTGTTGATGGTT+TGG | + | chr5_1:5876574-5876593 | Msa0713620:intron | 45.0% |
| CGTACTTGATTGCATCTCCT+AGG | - | chr5_1:5876920-5876939 | None:intergenic | 45.0% | |
| AAGAGCTCCAAGAACGTTTG+AGG | + | chr5_1:5876943-5876962 | Msa0713620:CDS | 45.0% | |
| AGAGCTCCAAGAACGTTTGA+GGG | + | chr5_1:5876944-5876963 | Msa0713620:CDS | 45.0% | |
| !! | GATGATTCTGAAGCTGCTAG+TGG | + | chr5_1:5877056-5877075 | Msa0713620:CDS | 45.0% |
| TGGACAAGGATGTGCTCATA+AGG | + | chr5_1:5877117-5877136 | Msa0713620:CDS | 45.0% | |
| GATCCACTGCCAAAAGCAAA+AGG | + | chr5_1:5877139-5877158 | Msa0713620:CDS | 45.0% | |
| GGATAGAATCCCCAAAAGGT+AGG | - | chr5_1:5877229-5877248 | None:intergenic | 45.0% | |
| AATCCCGAGCATCTTAAGCT+AGG | + | chr5_1:5877410-5877429 | Msa0713620:intron | 45.0% | |
| TGGTCCTAGCTTAAGATGCT+CGG | - | chr5_1:5877417-5877436 | None:intergenic | 45.0% | |
| ! | AAGGACCACTTTGGGAAGAA+CGG | + | chr5_1:5877533-5877552 | Msa0713620:intron | 45.0% |
| ! | GTTTTCCGTTCTTCCCAAAG+TGG | - | chr5_1:5877541-5877560 | None:intergenic | 45.0% |
| CGAAACATGTTCAGTCAGCA+CGG | - | chr5_1:5877681-5877700 | None:intergenic | 45.0% | |
| GCCCCAAGCAGTCTAAATTA+AGG | - | chr5_1:5877977-5877996 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTAAATAGTTTAA+GGG | - | chr5_1:5875479-5875498 | None:intergenic | 5.0% |
| !!! | ATTATTTTTTAAATAGTTTA+AGG | - | chr5_1:5875480-5875499 | None:intergenic | 5.0% |
| !! | AATTAAATTATATTTATTTG+AGG | + | chr5_1:5877915-5877934 | Msa0713620:intron | 5.0% |
| GAGGTCTGTGGCTCATAATC+AGG | + | chr5_1:5874562-5874581 | Msa0713620:CDS | 50.0% | |
| GCTCTAGCTGCTCTTATTCC+TGG | + | chr5_1:5874638-5874657 | Msa0713620:CDS | 50.0% | |
| TCTTGTTAACTAGTGCCCCC+AGG | - | chr5_1:5875266-5875285 | None:intergenic | 50.0% | |
| ATGGACAAGGCTTCAGTCCT+AGG | + | chr5_1:5876900-5876919 | Msa0713620:CDS | 50.0% | |
| !! | GTCCCTTTTGCTTTTGGCAG+TGG | - | chr5_1:5877145-5877164 | None:intergenic | 50.0% |
| GGTCCTAGCTTAAGATGCTC+GGG | - | chr5_1:5877416-5877435 | None:intergenic | 50.0% | |
| ATTGGGGCCTCATTCACGTT+AGG | - | chr5_1:5879033-5879052 | None:intergenic | 50.0% | |
| TAACGTGAATGAGGCCCCAA+TGG | + | chr5_1:5879032-5879051 | Msa0713620:three_prime_UTR | 50.0% | |
| CACAAGGACAAGGGACCAAG+AGG | + | chr5_1:5874543-5874562 | Msa0713620:CDS | 55.0% | |
| ACAAGGGACCAAGAGGTCTG+TGG | + | chr5_1:5874550-5874569 | Msa0713620:CDS | 55.0% | |
| TGCCCCCAGGACACTAGTTA+AGG | - | chr5_1:5875253-5875272 | None:intergenic | 55.0% | |
| CACGGTTTCAATGCACCCCA+TGG | - | chr5_1:5877663-5877682 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5873864 | 5879445 | 5873864 | ID=Msa0713620;Name=Msa0713620 |
| chr5_1 | mRNA | 5873864 | 5879445 | 5873864 | ID=Msa0713620-mRNA-1;Parent=Msa0713620;Name=Msa0713620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|1|1|1|1|1|4|420|328 |
| chr5_1 | exon | 5873864 | 5874064 | 5873864 | ID=Msa0713620-mRNA-1:exon:2552;Parent=Msa0713620-mRNA-1 |
| chr5_1 | exon | 5874191 | 5874670 | 5874191 | ID=Msa0713620-mRNA-1:exon:2553;Parent=Msa0713620-mRNA-1 |
| chr5_1 | exon | 5876900 | 5877271 | 5876900 | ID=Msa0713620-mRNA-1:exon:2554;Parent=Msa0713620-mRNA-1 |
| chr5_1 | exon | 5878948 | 5879445 | 5878948 | ID=Msa0713620-mRNA-1:exon:2555;Parent=Msa0713620-mRNA-1 |
| chr5_1 | five_prime_UTR | 5873864 | 5874007 | 5873864 | ID=Msa0713620-mRNA-1:five_prime_utr;Parent=Msa0713620-mRNA-1 |
| chr5_1 | CDS | 5874008 | 5874064 | 5874008 | ID=Msa0713620-mRNA-1:cds;Parent=Msa0713620-mRNA-1 |
| chr5_1 | CDS | 5874191 | 5874670 | 5874191 | ID=Msa0713620-mRNA-1:cds;Parent=Msa0713620-mRNA-1 |
| chr5_1 | CDS | 5876900 | 5877271 | 5876900 | ID=Msa0713620-mRNA-1:cds;Parent=Msa0713620-mRNA-1 |
| chr5_1 | CDS | 5878948 | 5879025 | 5878948 | ID=Msa0713620-mRNA-1:cds;Parent=Msa0713620-mRNA-1 |
| chr5_1 | three_prime_UTR | 5879026 | 5879445 | 5879026 | ID=Msa0713620-mRNA-1:three_prime_utr;Parent=Msa0713620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
