Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834860 | XP_003611493.1 | 92.492 | 333 | 18 | 2 | 1 | 327 | 1 | 332 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834860 | sp|Q9T072|BH025_ARATH | 44.622 | 251 | 124 | 7 | 84 | 322 | 76 | 323 | 8.65e-52 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834860 | G7K125 | 92.492 | 333 | 18 | 2 | 1 | 327 | 1 | 332 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0834860 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0634640 | Msa0834860 | 0.831298 | 1.807205e-55 | -8.615850e-47 |
| Msa0713620 | Msa0834860 | 0.898790 | 3.756094e-77 | -8.615850e-47 |
| Msa0730270 | Msa0834860 | 0.824057 | 9.918533e-54 | -8.615850e-47 |
| Msa0754680 | Msa0834860 | 0.941144 | 6.921084e-101 | -8.615850e-47 |
| Msa0770580 | Msa0834860 | 0.814383 | 1.584091e-51 | -8.615850e-47 |
| Msa0797350 | Msa0834860 | 0.935005 | 1.672026e-96 | -8.615850e-47 |
| Msa0834860 | Msa0868020 | 0.806482 | 8.050618e-50 | -8.615850e-47 |
| Msa0834860 | Msa1009020 | 0.807134 | 5.862766e-50 | -8.615850e-47 |
| Msa0834860 | Msa1291580 | -0.819367 | 1.205687e-52 | -8.615850e-47 |
| Msa0834860 | Msa1322580 | 0.824051 | 9.950096e-54 | -8.615850e-47 |
| Msa0834860 | Msa1358770 | 0.829670 | 4.519505e-55 | -8.615850e-47 |
| Msa0834860 | Msa1414030 | 0.813179 | 2.918153e-51 | -8.615850e-47 |
| Msa0256510 | Msa0834860 | 0.822452 | 2.350952e-53 | -8.615850e-47 |
| Msa0334350 | Msa0834860 | 0.814218 | 1.722853e-51 | -8.615850e-47 |
| Msa0350620 | Msa0834860 | 0.814048 | 1.878635e-51 | -8.615850e-47 |
| Msa0356890 | Msa0834860 | -0.808930 | 2.431789e-50 | -8.615850e-47 |
| Msa0586910 | Msa0834860 | 0.801462 | 8.903097e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834860 | MtrunA17_Chr5g0400621 | 92.492 | 333 | 18 | 2 | 1 | 327 | 1 | 332 | 0.0 | 525 |
| Msa0834860 | MtrunA17_Chr5g0400641 | 74.522 | 157 | 39 | 1 | 154 | 310 | 1 | 156 | 9.24e-77 | 232 |
| Msa0834860 | MtrunA17_Chr2g0307131 | 44.063 | 379 | 135 | 15 | 1 | 327 | 1 | 354 | 1.32e-71 | 226 |
| Msa0834860 | MtrunA17_Chr4g0054581 | 41.310 | 397 | 143 | 14 | 1 | 327 | 1 | 377 | 7.84e-70 | 222 |
| Msa0834860 | MtrunA17_Chr6g0468491 | 46.483 | 327 | 123 | 14 | 36 | 327 | 3 | 312 | 5.59e-69 | 218 |
| Msa0834860 | MtrunA17_Chr4g0033291 | 47.319 | 317 | 123 | 12 | 36 | 325 | 26 | 325 | 1.39e-68 | 217 |
| Msa0834860 | MtrunA17_Chr4g0033281 | 44.282 | 341 | 159 | 12 | 1 | 327 | 1 | 324 | 1.37e-67 | 214 |
| Msa0834860 | MtrunA17_Chr4g0054621 | 43.910 | 312 | 133 | 8 | 43 | 327 | 44 | 340 | 1.28e-66 | 213 |
| Msa0834860 | MtrunA17_Chr4g0033391 | 45.016 | 311 | 131 | 9 | 36 | 325 | 26 | 317 | 1.78e-66 | 212 |
| Msa0834860 | MtrunA17_Chr2g0307141 | 41.534 | 378 | 150 | 13 | 1 | 327 | 1 | 358 | 6.32e-64 | 206 |
| Msa0834860 | MtrunA17_Chr2g0280161 | 52.432 | 185 | 86 | 1 | 138 | 322 | 166 | 348 | 8.05e-58 | 190 |
| Msa0834860 | MtrunA17_Chr6g0468461 | 42.857 | 343 | 129 | 15 | 1 | 306 | 1 | 313 | 1.33e-57 | 189 |
| Msa0834860 | MtrunA17_Chr5g0400661 | 40.449 | 356 | 152 | 13 | 6 | 324 | 2 | 334 | 1.99e-57 | 188 |
| Msa0834860 | MtrunA17_Chr4g0049331 | 51.323 | 189 | 87 | 2 | 134 | 320 | 118 | 303 | 3.00e-56 | 185 |
| Msa0834860 | MtrunA17_Chr7g0225901 | 57.303 | 178 | 66 | 6 | 134 | 306 | 70 | 242 | 1.60e-54 | 178 |
| Msa0834860 | MtrunA17_Chr4g0054571 | 46.350 | 274 | 114 | 9 | 77 | 322 | 59 | 327 | 2.97e-54 | 180 |
| Msa0834860 | MtrunA17_Chr2g0333621 | 44.770 | 239 | 113 | 6 | 96 | 324 | 82 | 311 | 1.02e-53 | 178 |
| Msa0834860 | MtrunA17_Chr4g0002801 | 43.028 | 251 | 122 | 6 | 86 | 325 | 91 | 331 | 2.58e-53 | 178 |
| Msa0834860 | MtrunA17_Chr2g0333641 | 40.893 | 291 | 138 | 10 | 42 | 319 | 33 | 302 | 7.77e-51 | 171 |
| Msa0834860 | MtrunA17_Chr4g0002781 | 42.913 | 254 | 124 | 6 | 85 | 325 | 105 | 350 | 9.83e-50 | 169 |
| Msa0834860 | MtrunA17_Chr4g0054561 | 40.433 | 277 | 150 | 7 | 51 | 319 | 51 | 320 | 6.34e-49 | 166 |
| Msa0834860 | MtrunA17_Chr8g0336681 | 41.631 | 233 | 125 | 3 | 96 | 320 | 102 | 331 | 8.59e-49 | 166 |
| Msa0834860 | MtrunA17_Chr5g0400671 | 36.749 | 283 | 147 | 6 | 69 | 324 | 46 | 323 | 3.75e-46 | 159 |
| Msa0834860 | MtrunA17_Chr4g0054551 | 38.267 | 277 | 156 | 7 | 51 | 319 | 51 | 320 | 2.60e-45 | 157 |
| Msa0834860 | MtrunA17_Chr2g0333611 | 44.199 | 181 | 90 | 4 | 144 | 320 | 38 | 211 | 1.23e-42 | 147 |
| Msa0834860 | MtrunA17_Chr7g0249811 | 44.324 | 185 | 93 | 1 | 136 | 320 | 150 | 324 | 2.19e-41 | 147 |
| Msa0834860 | MtrunA17_Chr2g0333541 | 42.784 | 194 | 106 | 4 | 134 | 323 | 75 | 267 | 1.12e-40 | 143 |
| Msa0834860 | MtrunA17_Chr7g0233441 | 48.993 | 149 | 65 | 1 | 174 | 322 | 57 | 194 | 1.07e-38 | 135 |
| Msa0834860 | MtrunA17_Chr4g0002831 | 44.706 | 170 | 81 | 4 | 154 | 322 | 45 | 202 | 3.30e-36 | 129 |
| Msa0834860 | MtrunA17_Chr4g0002851 | 49.664 | 149 | 56 | 2 | 174 | 322 | 65 | 194 | 5.27e-36 | 129 |
| Msa0834860 | MtrunA17_Chr1g0185621 | 31.447 | 159 | 101 | 2 | 134 | 285 | 459 | 616 | 3.81e-19 | 88.2 |
| Msa0834860 | MtrunA17_Chr7g0275821 | 29.412 | 170 | 108 | 3 | 151 | 319 | 252 | 410 | 3.78e-16 | 79.0 |
| Msa0834860 | MtrunA17_Chr8g0366751 | 36.913 | 149 | 82 | 4 | 151 | 288 | 462 | 609 | 4.66e-15 | 75.9 |
| Msa0834860 | MtrunA17_Chr5g0411341 | 30.337 | 178 | 93 | 5 | 151 | 308 | 493 | 659 | 1.11e-14 | 74.7 |
| Msa0834860 | MtrunA17_Chr1g0211081 | 31.925 | 213 | 123 | 10 | 38 | 231 | 191 | 400 | 9.25e-14 | 72.0 |
| Msa0834860 | MtrunA17_Chr8g0365711 | 26.842 | 190 | 111 | 5 | 124 | 301 | 225 | 398 | 1.78e-13 | 70.9 |
| Msa0834860 | MtrunA17_Chr8g0346151 | 26.061 | 165 | 113 | 3 | 101 | 260 | 231 | 391 | 8.89e-13 | 68.9 |
| Msa0834860 | MtrunA17_Chr8g0346161 | 29.032 | 155 | 100 | 4 | 112 | 263 | 256 | 403 | 2.83e-12 | 67.4 |
| Msa0834860 | MtrunA17_Chr7g0260841 | 50.000 | 56 | 28 | 0 | 151 | 206 | 355 | 410 | 4.97e-12 | 66.6 |
| Msa0834860 | MtrunA17_Chr0c01g0489461 | 26.347 | 167 | 101 | 4 | 152 | 296 | 197 | 363 | 1.23e-11 | 65.1 |
| Msa0834860 | MtrunA17_Chr3g0131691 | 28.571 | 175 | 112 | 5 | 134 | 298 | 283 | 454 | 4.71e-11 | 63.5 |
| Msa0834860 | MtrunA17_Chr2g0298751 | 26.543 | 162 | 107 | 3 | 152 | 301 | 53 | 214 | 7.23e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834860 | AT4G37850.2 | 44.622 | 251 | 124 | 7 | 84 | 322 | 76 | 323 | 8.79e-53 | 177 |
| Msa0834860 | AT4G37850.1 | 44.622 | 251 | 124 | 7 | 84 | 322 | 76 | 323 | 8.79e-53 | 177 |
| Msa0834860 | AT2G22760.1 | 35.404 | 322 | 164 | 10 | 15 | 324 | 6 | 295 | 4.63e-46 | 158 |
| Msa0834860 | AT2G22750.2 | 44.033 | 243 | 117 | 7 | 89 | 319 | 62 | 297 | 2.68e-44 | 154 |
| Msa0834860 | AT2G22750.5 | 44.033 | 243 | 117 | 7 | 89 | 319 | 86 | 321 | 2.77e-44 | 154 |
| Msa0834860 | AT2G22750.3 | 36.441 | 354 | 158 | 11 | 4 | 319 | 1 | 325 | 4.41e-44 | 154 |
| Msa0834860 | AT2G22750.1 | 44.033 | 243 | 116 | 8 | 89 | 319 | 62 | 296 | 8.98e-43 | 150 |
| Msa0834860 | AT2G22750.4 | 36.441 | 354 | 157 | 12 | 4 | 319 | 1 | 324 | 1.03e-42 | 150 |
| Msa0834860 | AT2G22770.1 | 36.050 | 319 | 158 | 9 | 39 | 322 | 10 | 317 | 3.60e-42 | 149 |
| Msa0834860 | AT2G22760.2 | 35.548 | 301 | 151 | 9 | 15 | 304 | 6 | 274 | 8.74e-42 | 147 |
| Msa0834860 | AT4G09820.1 | 34.109 | 129 | 61 | 2 | 152 | 280 | 364 | 468 | 1.04e-15 | 78.2 |
| Msa0834860 | AT2G46510.1 | 32.331 | 133 | 69 | 3 | 130 | 260 | 372 | 485 | 2.45e-15 | 77.0 |
| Msa0834860 | AT4G17880.1 | 31.250 | 160 | 104 | 3 | 151 | 308 | 416 | 571 | 5.04e-15 | 76.3 |
| Msa0834860 | AT3G61950.6 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 1.15e-14 | 73.9 |
| Msa0834860 | AT2G16910.1 | 32.258 | 155 | 84 | 4 | 152 | 285 | 315 | 469 | 1.32e-14 | 75.1 |
| Msa0834860 | AT5G46760.1 | 30.769 | 169 | 97 | 4 | 151 | 308 | 415 | 574 | 1.52e-14 | 74.7 |
| Msa0834860 | AT3G61950.3 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 2.04e-14 | 73.6 |
| Msa0834860 | AT1G32640.1 | 32.331 | 133 | 90 | 0 | 151 | 283 | 452 | 584 | 2.23e-14 | 74.3 |
| Msa0834860 | AT1G01260.1 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 2.33e-14 | 74.3 |
| Msa0834860 | AT1G01260.2 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 2.33e-14 | 74.3 |
| Msa0834860 | AT1G01260.3 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 2.33e-14 | 74.3 |
| Msa0834860 | AT3G61950.2 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 2.45e-14 | 72.8 |
| Msa0834860 | AT3G61950.1 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 3.41e-14 | 73.2 |
| Msa0834860 | AT2G28160.1 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.56e-12 | 67.8 |
| Msa0834860 | AT2G28160.2 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.69e-12 | 67.4 |
| Msa0834860 | AT1G63650.3 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.68e-12 | 68.2 |
| Msa0834860 | AT1G63650.1 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.68e-12 | 68.2 |
| Msa0834860 | AT1G63650.2 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.68e-12 | 68.2 |
| Msa0834860 | AT4G16430.1 | 50.000 | 58 | 29 | 0 | 151 | 208 | 320 | 377 | 2.91e-12 | 67.8 |
| Msa0834860 | AT3G24140.2 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 4.03e-12 | 67.0 |
| Msa0834860 | AT3G24140.1 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 4.52e-12 | 67.0 |
| Msa0834860 | AT1G12860.2 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 6.88e-12 | 66.2 |
| Msa0834860 | AT1G12860.1 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 8.72e-12 | 66.2 |
| Msa0834860 | AT5G41315.2 | 29.310 | 174 | 96 | 7 | 151 | 300 | 449 | 619 | 1.16e-11 | 66.2 |
| Msa0834860 | AT5G41315.3 | 29.310 | 174 | 96 | 7 | 151 | 300 | 446 | 616 | 1.24e-11 | 65.9 |
| Msa0834860 | AT5G41315.1 | 29.310 | 174 | 96 | 7 | 151 | 300 | 441 | 611 | 1.33e-11 | 65.9 |
| Msa0834860 | AT4G30980.1 | 28.177 | 181 | 111 | 3 | 100 | 270 | 82 | 253 | 1.42e-11 | 64.7 |
| Msa0834860 | AT4G30980.2 | 28.571 | 182 | 109 | 4 | 100 | 270 | 130 | 301 | 2.69e-11 | 64.3 |
| Msa0834860 | AT5G57150.2 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 8.15e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCACGGTTTCTAGTTTC+TGG | 0.209923 | 5_4:-8142089 | None:intergenic |
| TTATCCTTTAGAAAAGAATT+TGG | 0.226485 | 5_4:+8142564 | Msa0834860:CDS |
| CTAATACCCTCAAACGTTCT+TGG | 0.234491 | 5_4:-8145159 | None:intergenic |
| AGTCTTGTTCTATGATAAAT+TGG | 0.239847 | 5_4:+8142130 | Msa0834860:five_prime_UTR |
| AATCACATCAATAGTCATTA+TGG | 0.256413 | 5_4:+8142199 | Msa0834860:exon |
| AATAACAGTGTCCTACCTTT+TGG | 0.259096 | 5_4:+8145424 | Msa0834860:CDS |
| TGAGAATATATACATATAAT+TGG | 0.261698 | 5_4:+8147567 | Msa0834860:three_prime_UTR |
| GCTCTAGCTGCTCTTATTCC+TGG | 0.270587 | 5_4:+8142847 | Msa0834860:CDS |
| TCTTTCTCTCTGCTATGATA+TGG | 0.318056 | 5_4:-8142795 | None:intergenic |
| TCAAATAATAGATTAAGATT+TGG | 0.321285 | 5_4:+8147623 | Msa0834860:three_prime_UTR |
| GTTCCAGCTATTGGAAGAAA+TGG | 0.343234 | 5_4:+8142393 | Msa0834860:intron |
| TGTTTCACAATTTAAGAGAT+TGG | 0.357280 | 5_4:-8142157 | None:intergenic |
| CAACGTGAACAAAACTTGTT+TGG | 0.357562 | 5_4:+8142442 | Msa0834860:CDS |
| CACATCCTTGTCCAAAACTT+TGG | 0.362806 | 5_4:-8145317 | None:intergenic |
| TAATAGTCATGTTCAGTCTA+TGG | 0.373573 | 5_4:+8145198 | Msa0834860:CDS |
| ATTATTAGTTAATAAGTGTT+TGG | 0.401462 | 5_4:-8147356 | None:intergenic |
| ACATGTAGAAGCCAAAGTTT+TGG | 0.403189 | 5_4:+8145306 | Msa0834860:CDS |
| GGTAATTGTGTTTGTGAGAA+TGG | 0.404374 | 5_4:-8142676 | None:intergenic |
| AACTAGCTGGTTATCTGATC+TGG | 0.407880 | 5_4:+8142253 | Msa0834860:CDS |
| GAGGTCTGTGGCTCATAATC+AGG | 0.412438 | 5_4:+8142771 | Msa0834860:CDS |
| ATTATTGTTGCATCTACCAT+TGG | 0.417026 | 5_4:-8147306 | None:intergenic |
| TTATTGTTGCATCTACCATT+GGG | 0.417570 | 5_4:-8147305 | None:intergenic |
| TGGACAAGGATGTGCTCATA+AGG | 0.429386 | 5_4:+8145326 | Msa0834860:CDS |
| ATGGACAAGGCTTCAGTCCT+AGG | 0.441208 | 5_4:+8145109 | Msa0834860:CDS |
| TTGGAAGAAATGGAAATAGA+TGG | 0.445551 | 5_4:+8142403 | Msa0834860:CDS |
| AAGATAACAAAGGTTGATGT+TGG | 0.458857 | 5_4:-8142522 | None:intergenic |
| TTTCTGGTCAATTTACTTCG+AGG | 0.459169 | 5_4:-8142073 | None:intergenic |
| TAATACTATTCGTGTCATCT+TGG | 0.462966 | 5_4:+8147392 | Msa0834860:three_prime_UTR |
| TGATATAACCATCGTTGCTC+AGG | 0.464649 | 5_4:+8145459 | Msa0834860:CDS |
| GATCCACTGCCAAAAGCAAA+AGG | 0.466058 | 5_4:+8145348 | Msa0834860:CDS |
| CAATTACCTCGAAATAGAAA+AGG | 0.474445 | 5_4:+8142691 | Msa0834860:CDS |
| TTCGTATCTTCTTTATAGCA+CGG | 0.491119 | 5_4:-8142103 | None:intergenic |
| TCTTATTCCTGGCTTGAAGA+AGG | 0.494711 | 5_4:+8142858 | Msa0834860:CDS |
| AGTGAGCATGATAAAATCAA+TGG | 0.502461 | 5_4:-8147453 | None:intergenic |
| TTCTTCAGAAGTCATTATGT+AGG | 0.503771 | 5_4:-8147416 | None:intergenic |
| ATTATGAGCCACAGACCTCT+TGG | 0.506300 | 5_4:-8142767 | None:intergenic |
| ATTGGGGCCACATTCACGTT+AGG | 0.508391 | 5_4:-8147288 | None:intergenic |
| ATGATAAAATCAATGGTTCA+TGG | 0.513260 | 5_4:-8147446 | None:intergenic |
| CCATATACCTTCTTCAAGCC+AGG | 0.514414 | 5_4:-8142865 | None:intergenic |
| CGTACTTGATTGCATCTCCT+AGG | 0.518134 | 5_4:-8145126 | None:intergenic |
| AAGAGCTCCAAGAACGTTTG+AGG | 0.518931 | 5_4:+8145152 | Msa0834860:CDS |
| TCTTCAGAAGTCATTATGTA+GGG | 0.533712 | 5_4:-8147415 | None:intergenic |
| CAAACTCATCATCAACTAGC+TGG | 0.535900 | 5_4:+8142240 | Msa0834860:CDS |
| TCATATGATATGATCATGGA+TGG | 0.547499 | 5_4:+8147328 | Msa0834860:three_prime_UTR |
| ATAATCATATGATATGATCA+TGG | 0.548325 | 5_4:+8147324 | Msa0834860:three_prime_UTR |
| AAAACTTTGGCTTCTACATG+TGG | 0.548591 | 5_4:-8145304 | None:intergenic |
| AATTACCTCGAAATAGAAAA+GGG | 0.550335 | 5_4:+8142692 | Msa0834860:CDS |
| GAGCAACGATGGTTATATCA+AGG | 0.552186 | 5_4:-8145456 | None:intergenic |
| TAACGTGAATGTGGCCCCAA+TGG | 0.567361 | 5_4:+8147290 | Msa0834860:three_prime_UTR |
| AGAGCTCCAAGAACGTTTGA+GGG | 0.570082 | 5_4:+8145153 | Msa0834860:CDS |
| TCAAGGATAGAATCCCCAAA+AGG | 0.575129 | 5_4:-8145439 | None:intergenic |
| ATCCACTGCCAAAAGCAAAA+GGG | 0.579077 | 5_4:+8145349 | Msa0834860:CDS |
| GATGAGTCAGAACTTAGTTG+TGG | 0.581816 | 5_4:-8145235 | None:intergenic |
| TTTCTTTACCTGAGCAACGA+TGG | 0.599102 | 5_4:-8145467 | None:intergenic |
| ACTACAAAGTCACAAGGACA+AGG | 0.603785 | 5_4:+8142742 | Msa0834860:CDS |
| GGATAGAATCCCCAAAAGGT+AGG | 0.609941 | 5_4:-8145435 | None:intergenic |
| TCATGTTCAGTCTATGGTGA+CGG | 0.614450 | 5_4:+8145204 | Msa0834860:CDS |
| TATTGTTGCATCTACCATTG+GGG | 0.619577 | 5_4:-8147304 | None:intergenic |
| TAATTGTCCTAACGTGAATG+TGG | 0.625906 | 5_4:+8147281 | Msa0834860:exon |
| AAACTTTGGCTTCTACATGT+GGG | 0.634166 | 5_4:-8145303 | None:intergenic |
| TAGCTTTCAGAAGATAACAA+AGG | 0.638184 | 5_4:-8142532 | None:intergenic |
| ACGTTAGGACAATTATAACA+TGG | 0.639666 | 5_4:-8147273 | None:intergenic |
| CACAAGGACAAGGGACCAAG+AGG | 0.647237 | 5_4:+8142752 | Msa0834860:CDS |
| ACAAGGGACCAAGAGGTCTG+TGG | 0.659567 | 5_4:+8142759 | Msa0834860:CDS |
| GATGATTCTGAAGCTGCTAG+TGG | 0.660614 | 5_4:+8145265 | Msa0834860:CDS |
| CTACAAAGTCACAAGGACAA+GGG | 0.698526 | 5_4:+8142743 | Msa0834860:CDS |
| GTTGAAACTACAAAGTCACA+AGG | 0.718556 | 5_4:+8142736 | Msa0834860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATATATAAAAATT+GGG | - | chr5_4:8143336-8143355 | None:intergenic | 0.0% |
| !! | ATAAATAAATATATAAAAAT+TGG | - | chr5_4:8143337-8143356 | None:intergenic | 0.0% |
| !!! | TTAAAAAATAATTTTATATT+AGG | + | chr5_4:8143697-8143716 | Msa0834860:intron | 0.0% |
| !!! | TTTTTTTTCAATTTTTTGTT+TGG | - | chr5_4:8142595-8142614 | None:intergenic | 10.0% |
| !! | TCAATTTATTAAAAAGTTAA+AGG | - | chr5_4:8143239-8143258 | None:intergenic | 10.0% |
| !!! | TTTATTTATTGTTTTAGTTA+TGG | + | chr5_4:8143348-8143367 | Msa0834860:intron | 10.0% |
| !!! | ATCATTTTTAATTTAATAAC+AGG | + | chr5_4:8143868-8143887 | Msa0834860:intron | 10.0% |
| !!! | AAAATATTTTTCCAATATAA+AGG | + | chr5_4:8144096-8144115 | Msa0834860:intron | 10.0% |
| !!! | TATTTATCCATAATTATTTT+GGG | - | chr5_4:8144134-8144153 | None:intergenic | 10.0% |
| !!! | TTATTTATCCATAATTATTT+TGG | - | chr5_4:8144135-8144154 | None:intergenic | 10.0% |
| !! | AATTGAAATAATTATTATGT+TGG | - | chr5_4:8144293-8144312 | None:intergenic | 10.0% |
| !!! | CCAATTTTTTTTTTTTTTTA+CGG | - | chr5_4:8144997-8145016 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATTGGTATA+AGG | + | chr5_4:8145001-8145020 | Msa0834860:intron | 10.0% |
| !! | AAATTTAATAAAAGTTCATA+CGG | - | chr5_4:8145799-8145818 | None:intergenic | 10.0% |
| !!! | ACTTTTATTAAATTTAAATG+CGG | + | chr5_4:8145804-8145823 | Msa0834860:intron | 10.0% |
| !! | TACATTTATAAATATTGAAA+AGG | - | chr5_4:8147025-8147044 | None:intergenic | 10.0% |
| !!! | ATTTTTCATAGTTTAACTAA+CGG | - | chr5_4:8143498-8143517 | None:intergenic | 15.0% |
| !!! | AATACAAAATTTACTAGTTT+TGG | - | chr5_4:8143555-8143574 | None:intergenic | 15.0% |
| !! | ATTATTTCAATTTATGTACT+TGG | + | chr5_4:8144301-8144320 | Msa0834860:intron | 15.0% |
| !!! | TTTTCAACAAATTATATGTT+TGG | + | chr5_4:8144335-8144354 | Msa0834860:intron | 15.0% |
| !!! | ATTGATTTTAAATTGAAGTT+AGG | - | chr5_4:8144531-8144550 | None:intergenic | 15.0% |
| !! | CCGTAAAAAAAAAAAAAAAT+TGG | + | chr5_4:8144994-8145013 | Msa0834860:intron | 15.0% |
| !! | GATACTTTAAATGATTAAAA+AGG | - | chr5_4:8145529-8145548 | None:intergenic | 15.0% |
| !! | GATACTTTAAATGATTAAAA+AGG | - | chr5_4:8145529-8145548 | None:intergenic | 15.0% |
| !!! | GACTAAGATTATTATTATTT+TGG | - | chr5_4:8145946-8145965 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTGAATCTA+AGG | + | chr5_4:8146130-8146149 | Msa0834860:intron | 15.0% |
| !! | AAATTCCAAGAATTAAAAAA+TGG | + | chr5_4:8146452-8146471 | Msa0834860:intron | 15.0% |
| !!! | ATTTTTTGATAAAATGAAAC+AGG | + | chr5_4:8146515-8146534 | Msa0834860:intron | 15.0% |
| !!! | TTTTTTGATAAAATGAAACA+GGG | + | chr5_4:8146516-8146535 | Msa0834860:intron | 15.0% |
| !! | TTGATATGTGAAATTAATTA+AGG | + | chr5_4:8146668-8146687 | Msa0834860:intron | 15.0% |
| !! | AATTACAAAGAAATTAATCA+AGG | + | chr5_4:8146745-8146764 | Msa0834860:intron | 15.0% |
| !!! | TTGATTTGAGAAATTAATTA+AGG | + | chr5_4:8147106-8147125 | Msa0834860:intron | 15.0% |
| !! | ATTATTAGTTAATAAGTGTT+TGG | - | chr5_4:8147359-8147378 | None:intergenic | 15.0% |
| !! | TGAGAATATATACATATAAT+TGG | + | chr5_4:8147567-8147586 | Msa0834860:three_prime_UTR | 15.0% |
| !! | TCAAATAATAGATTAAGATT+TGG | + | chr5_4:8147623-8147642 | Msa0834860:three_prime_UTR | 15.0% |
| !! | AATTATATGCACAAATGAAA+TGG | + | chr5_4:8142325-8142344 | Msa0834860:intron | 20.0% |
| !!! | TTATCCTTTAGAAAAGAATT+TGG | + | chr5_4:8142564-8142583 | Msa0834860:CDS | 20.0% |
| !!! | CTTGTTCTTTTTTGTATTTA+AGG | - | chr5_4:8142650-8142669 | None:intergenic | 20.0% |
| !! | CTTAAATACAAAAAAGAACA+AGG | + | chr5_4:8142648-8142667 | Msa0834860:CDS | 20.0% |
| !!! | ATTTATTAAAAGTACTGAGA+TGG | + | chr5_4:8142913-8142932 | Msa0834860:intron | 20.0% |
| !! | TGTACTAGTATTTATTATGT+AGG | + | chr5_4:8143045-8143064 | Msa0834860:intron | 20.0% |
| !! | GTACTAGTATTTATTATGTA+GGG | + | chr5_4:8143046-8143065 | Msa0834860:intron | 20.0% |
| !! | TTTATGAATCTTAAACAAAG+CGG | - | chr5_4:8143072-8143091 | None:intergenic | 20.0% |
| !! | TGGTTATAGTATAATTATCT+TGG | + | chr5_4:8143368-8143387 | Msa0834860:intron | 20.0% |
| !!! | TTTTTCATAGTTTAACTAAC+GGG | - | chr5_4:8143497-8143516 | None:intergenic | 20.0% |
| !! | TGTTATAAGAACATTGTTTA+AGG | - | chr5_4:8143652-8143671 | None:intergenic | 20.0% |
| !!! | GAATTGTTTTTCCTTTATAT+TGG | - | chr5_4:8144110-8144129 | None:intergenic | 20.0% |
| !!! | TAAGTTTGTTTGTTCTTTAT+TGG | - | chr5_4:8144573-8144592 | None:intergenic | 20.0% |
| !! | TTCGTATGATGTTAATTAAT+TGG | + | chr5_4:8144672-8144691 | Msa0834860:intron | 20.0% |
| !! | GATGTTAATTAATTGGTATA+AGG | + | chr5_4:8144679-8144698 | Msa0834860:intron | 20.0% |
| !! | TAATTAATTGGTATAAGGTT+TGG | + | chr5_4:8144684-8144703 | Msa0834860:intron | 20.0% |
| !!! | TCTTTTTTTCTATCCAATTA+CGG | - | chr5_4:8144727-8144746 | None:intergenic | 20.0% |
| !! | ACTAGTTAGCTATTAATTAT+AGG | + | chr5_4:8145035-8145054 | Msa0834860:intron | 20.0% |
| !! | GTAAAAAAAAAATCTACAGA+TGG | + | chr5_4:8145090-8145109 | Msa0834860:intron | 20.0% |
| !!! | GTATAAATCGATTTTCTAAA+AGG | + | chr5_4:8145843-8145862 | Msa0834860:intron | 20.0% |
| !!! | AAGTCTAATATACTCTTTTA+AGG | - | chr5_4:8146193-8146212 | None:intergenic | 20.0% |
| !!! | TACTTCCATTTTTTAATTCT+TGG | - | chr5_4:8146460-8146479 | None:intergenic | 20.0% |
| !!! | TTTTTGATAAAATGAAACAG+GGG | + | chr5_4:8146517-8146536 | Msa0834860:intron | 20.0% |
| !! | TACATTTATGAAGATTGAAA+GGG | - | chr5_4:8146615-8146634 | None:intergenic | 20.0% |
| !! | ATACATTTATGAAGATTGAA+AGG | - | chr5_4:8146616-8146635 | None:intergenic | 20.0% |
| !!! | ATCATCAACTTTTTTTTACA+AGG | - | chr5_4:8146982-8147001 | None:intergenic | 20.0% |
| !! | TCTCAAATCAATTGAAAATT+TGG | - | chr5_4:8147097-8147116 | None:intergenic | 20.0% |
| !! | ATAATCATATGATATGATCA+TGG | + | chr5_4:8147324-8147343 | Msa0834860:three_prime_UTR | 20.0% |
| !!! | AGTCTTGTTCTATGATAAAT+TGG | + | chr5_4:8142130-8142149 | Msa0834860:five_prime_UTR | 25.0% |
| ! | TGTTTCACAATTTAAGAGAT+TGG | - | chr5_4:8142160-8142179 | None:intergenic | 25.0% |
| ! | AATCACATCAATAGTCATTA+TGG | + | chr5_4:8142199-8142218 | Msa0834860:exon | 25.0% |
| ! | GTGCATATAATTAAGAACTA+TGG | - | chr5_4:8142317-8142336 | None:intergenic | 25.0% |
| !!! | AGAAAGTATTTTTCAACAAG+AGG | + | chr5_4:8142492-8142511 | Msa0834860:CDS | 25.0% |
| !! | CTTTCCAAATTCTTTTCTAA+AGG | - | chr5_4:8142571-8142590 | None:intergenic | 25.0% |
| ! | AATTACCTCGAAATAGAAAA+GGG | + | chr5_4:8142692-8142711 | Msa0834860:CDS | 25.0% |
| ! | GGACATATTAATTTCATGTT+TGG | + | chr5_4:8142934-8142953 | Msa0834860:intron | 25.0% |
| !!! | TTAAGCAAACGTTTTTTTGA+AGG | - | chr5_4:8142969-8142988 | None:intergenic | 25.0% |
| ! | ATACTAGTACAAACTTAAAG+TGG | - | chr5_4:8143036-8143055 | None:intergenic | 25.0% |
| !! | TAATGCTAATTTGTACTCTT+AGG | - | chr5_4:8143313-8143332 | None:intergenic | 25.0% |
| !! | TTAATTTTCTTGAGTGAAAG+TGG | - | chr5_4:8143812-8143831 | None:intergenic | 25.0% |
| !! | GCTATCTGAATTAACTTTTA+AGG | + | chr5_4:8143842-8143861 | Msa0834860:intron | 25.0% |
| ! | CAATTCACCCAAAATAATTA+TGG | + | chr5_4:8144124-8144143 | Msa0834860:intron | 25.0% |
| !!! | TTATGTACTTGGTTTTGAAT+TGG | + | chr5_4:8144312-8144331 | Msa0834860:intron | 25.0% |
| ! | AAATTATATGTTTGGATCTG+CGG | + | chr5_4:8144343-8144362 | Msa0834860:intron | 25.0% |
| ! | AATAGCTAACATGACTATTT+AGG | - | chr5_4:8144654-8144673 | None:intergenic | 25.0% |
| !!! | TATTGGCTCTTTAAAATTGT+TGG | + | chr5_4:8144898-8144917 | Msa0834860:intron | 25.0% |
| !!! | ATTGGCTCTTTAAAATTGTT+GGG | + | chr5_4:8144899-8144918 | Msa0834860:intron | 25.0% |
| ! | TTAATAAAAGTTCATACGGT+TGG | - | chr5_4:8145795-8145814 | None:intergenic | 25.0% |
| !! | AGAAAATCGATTTATACCAT+CGG | - | chr5_4:8145840-8145859 | None:intergenic | 25.0% |
| !!! | TTGAGACTTTTGAAACTTAA+AGG | + | chr5_4:8145872-8145891 | Msa0834860:intron | 25.0% |
| ! | ACCTTGTACTAAAAATGATT+AGG | + | chr5_4:8145987-8146006 | Msa0834860:intron | 25.0% |
| !!! | ACCTAATCATTTTTAGTACA+AGG | - | chr5_4:8145991-8146010 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTCCTAAATTTCG+AGG | + | chr5_4:8146298-8146317 | Msa0834860:intron | 25.0% |
| ! | TTTAAAAACTGCTTGTGAAA+AGG | - | chr5_4:8146648-8146667 | None:intergenic | 25.0% |
| ! | ATGTGAAATTAATTAAGGAG+AGG | + | chr5_4:8146673-8146692 | Msa0834860:intron | 25.0% |
| !!! | GAGAGGTTTTATTTTGTATT+TGG | + | chr5_4:8146690-8146709 | Msa0834860:intron | 25.0% |
| !! | TTTTGTATTTGGAAACAAAG+AGG | + | chr5_4:8146701-8146720 | Msa0834860:intron | 25.0% |
| ! | TTTGTATTTGGAAACAAAGA+GGG | + | chr5_4:8146702-8146721 | Msa0834860:intron | 25.0% |
| !!! | ATGATTATTGATGACGTTTT+TGG | - | chr5_4:8146781-8146800 | None:intergenic | 25.0% |
| ! | AATCATTTGAGTGATTTGAA+TGG | + | chr5_4:8146795-8146814 | Msa0834860:intron | 25.0% |
| ! | ACTATTTCCCTTGAATTATT+TGG | + | chr5_4:8147134-8147153 | Msa0834860:intron | 25.0% |
| ! | CTATTTCCCTTGAATTATTT+GGG | + | chr5_4:8147135-8147154 | Msa0834860:intron | 25.0% |
| ! | TCATTTCCCAAATAATTCAA+GGG | - | chr5_4:8147144-8147163 | None:intergenic | 25.0% |
| ! | CTGCAAAAAAAAAAATCGTT+TGG | - | chr5_4:8147186-8147205 | None:intergenic | 25.0% |
| !!! | ACGATTTTTTTTTTTGCAGA+TGG | + | chr5_4:8147187-8147206 | Msa0834860:intron | 25.0% |
| !!! | CGATTTTTTTTTTTGCAGAT+GGG | + | chr5_4:8147188-8147207 | Msa0834860:intron | 25.0% |
| ! | ATGATAAAATCAATGGTTCA+TGG | - | chr5_4:8147449-8147468 | None:intergenic | 25.0% |
| TTCGTATCTTCTTTATAGCA+CGG | - | chr5_4:8142106-8142125 | None:intergenic | 30.0% | |
| TTGGAAGAAATGGAAATAGA+TGG | + | chr5_4:8142403-8142422 | Msa0834860:CDS | 30.0% | |
| !! | AAGATAACAAAGGTTGATGT+TGG | - | chr5_4:8142525-8142544 | None:intergenic | 30.0% |
| TAGCTTTCAGAAGATAACAA+AGG | - | chr5_4:8142535-8142554 | None:intergenic | 30.0% | |
| CAATTACCTCGAAATAGAAA+AGG | + | chr5_4:8142691-8142710 | Msa0834860:CDS | 30.0% | |
| ATCAATCAGATAGAACTTGT+CGG | - | chr5_4:8143967-8143986 | None:intergenic | 30.0% | |
| ! | TGGGTTAAAAGTTTTTCACA+TGG | + | chr5_4:8144057-8144076 | Msa0834860:intron | 30.0% |
| CAATCTAGACATCAATAAGA+TGG | - | chr5_4:8144159-8144178 | None:intergenic | 30.0% | |
| ! | ACGATGAATCAACACATTTT+TGG | + | chr5_4:8144199-8144218 | Msa0834860:intron | 30.0% |
| !! | GTACTACTCTATTTCTATCA+AGG | + | chr5_4:8144228-8144247 | Msa0834860:intron | 30.0% |
| GAGAAAAACTTACTTTCAAC+CGG | - | chr5_4:8144271-8144290 | None:intergenic | 30.0% | |
| ! | AAACTCAATTTTACATCTCC+AGG | + | chr5_4:8144595-8144614 | Msa0834860:intron | 30.0% |
| ! | AACTCAATTTTACATCTCCA+GGG | + | chr5_4:8144596-8144615 | Msa0834860:intron | 30.0% |
| ! | ACTATTTAGGTTTGGTTTCA+TGG | - | chr5_4:8144641-8144660 | None:intergenic | 30.0% |
| ! | CTAACATGACTATTTAGGTT+TGG | - | chr5_4:8144649-8144668 | None:intergenic | 30.0% |
| ! | TAATTGGTATAAGGTTTGGT+TGG | + | chr5_4:8144688-8144707 | Msa0834860:intron | 30.0% |
| !! | TCCAATTACGGATCATTTTT+GGG | - | chr5_4:8144715-8144734 | None:intergenic | 30.0% |
| ! | ATCCAATTACGGATCATTTT+TGG | - | chr5_4:8144716-8144735 | None:intergenic | 30.0% |
| TTGGATAGAAAAAAAGACTC+TGG | + | chr5_4:8144730-8144749 | Msa0834860:intron | 30.0% | |
| GGTTGTTAGAGTATGAAATT+TGG | + | chr5_4:8144804-8144823 | Msa0834860:intron | 30.0% | |
| ! | GTAGTCTTTTTCTCTTGTAT+TGG | + | chr5_4:8144881-8144900 | Msa0834860:intron | 30.0% |
| AGCTAGTGTTAATATTGAAG+GGG | - | chr5_4:8144930-8144949 | None:intergenic | 30.0% | |
| CAGCTAGTGTTAATATTGAA+GGG | - | chr5_4:8144931-8144950 | None:intergenic | 30.0% | |
| ACAGCTAGTGTTAATATTGA+AGG | - | chr5_4:8144932-8144951 | None:intergenic | 30.0% | |
| AAAAAATCTACAGATGGACA+AGG | + | chr5_4:8145096-8145115 | Msa0834860:intron | 30.0% | |
| TAATAGTCATGTTCAGTCTA+TGG | + | chr5_4:8145198-8145217 | Msa0834860:CDS | 30.0% | |
| ! | TTTTGGTCAAATGCATCTAA+AGG | - | chr5_4:8145929-8145948 | None:intergenic | 30.0% |
| ! | TTGAATCTAAGGTTCGAAAA+TGG | + | chr5_4:8146141-8146160 | Msa0834860:intron | 30.0% |
| AAACCTTAATTTAGACTGCT+TGG | + | chr5_4:8146329-8146348 | Msa0834860:intron | 30.0% | |
| AACCTTAATTTAGACTGCTT+GGG | + | chr5_4:8146330-8146349 | Msa0834860:intron | 30.0% | |
| TATTGAAAAGGACACAAGAA+GGG | - | chr5_4:8147013-8147032 | None:intergenic | 30.0% | |
| ATATTGAAAAGGACACAAGA+AGG | - | chr5_4:8147014-8147033 | None:intergenic | 30.0% | |
| TTGAAAATTTGGTTGTCGAA+AGG | - | chr5_4:8147086-8147105 | None:intergenic | 30.0% | |
| CTCATTTCCCAAATAATTCA+AGG | - | chr5_4:8147145-8147164 | None:intergenic | 30.0% | |
| CTTGAATTATTTGGGAAATG+AGG | + | chr5_4:8147143-8147162 | Msa0834860:intron | 30.0% | |
| !!! | TTTTTTTTTGCAGATGGGAA+CGG | + | chr5_4:8147193-8147212 | Msa0834860:intron | 30.0% |
| !! | CTTTTTCACAAGATCATTTC+TGG | - | chr5_4:8147231-8147250 | None:intergenic | 30.0% |
| ACGTTAGGACAATTATAACA+TGG | - | chr5_4:8147276-8147295 | None:intergenic | 30.0% | |
| TTATTGTTGCATCTACCATT+GGG | - | chr5_4:8147308-8147327 | None:intergenic | 30.0% | |
| ATTATTGTTGCATCTACCAT+TGG | - | chr5_4:8147309-8147328 | None:intergenic | 30.0% | |
| TCATATGATATGATCATGGA+TGG | + | chr5_4:8147328-8147347 | Msa0834860:three_prime_UTR | 30.0% | |
| TAATACTATTCGTGTCATCT+TGG | + | chr5_4:8147392-8147411 | Msa0834860:three_prime_UTR | 30.0% | |
| TCTTCAGAAGTCATTATGTA+GGG | - | chr5_4:8147418-8147437 | None:intergenic | 30.0% | |
| TTCTTCAGAAGTCATTATGT+AGG | - | chr5_4:8147419-8147438 | None:intergenic | 30.0% | |
| AGTGAGCATGATAAAATCAA+TGG | - | chr5_4:8147456-8147475 | None:intergenic | 30.0% | |
| !! | TTGTGTTTTGTTCCAGCTAT+TGG | + | chr5_4:8142384-8142403 | Msa0834860:intron | 35.0% |
| TTTCCATTTCTTCCAATAGC+TGG | - | chr5_4:8142399-8142418 | None:intergenic | 35.0% | |
| ! | CAACGTGAACAAAACTTGTT+TGG | + | chr5_4:8142442-8142461 | Msa0834860:CDS | 35.0% |
| GGTAATTGTGTTTGTGAGAA+TGG | - | chr5_4:8142679-8142698 | None:intergenic | 35.0% | |
| ! | AATGACCCTTTTCTATTTCG+AGG | - | chr5_4:8142700-8142719 | None:intergenic | 35.0% |
| GTTGAAACTACAAAGTCACA+AGG | + | chr5_4:8142736-8142755 | Msa0834860:CDS | 35.0% | |
| TCTTTCTCTCTGCTATGATA+TGG | - | chr5_4:8142798-8142817 | None:intergenic | 35.0% | |
| TCGTAAATACTCATTCCTCA+AGG | + | chr5_4:8143764-8143783 | Msa0834860:intron | 35.0% | |
| TAGAACATCAAATGTTGCGT+GGG | + | chr5_4:8144038-8144057 | Msa0834860:intron | 35.0% | |
| GGATTATGTCGAATTTCAAC+CGG | + | chr5_4:8144249-8144268 | Msa0834860:intron | 35.0% | |
| TCCCAAAAATGATCCGTAAT+TGG | + | chr5_4:8144711-8144730 | Msa0834860:intron | 35.0% | |
| AAACTTTGCAGACAAGTATG+AGG | - | chr5_4:8144837-8144856 | None:intergenic | 35.0% | |
| ATACTTGTCTGCAAAGTTTC+TGG | + | chr5_4:8144838-8144857 | Msa0834860:intron | 35.0% | |
| TACTTGTCTGCAAAGTTTCT+GGG | + | chr5_4:8144839-8144858 | Msa0834860:intron | 35.0% | |
| ! | AAACTTTGGCTTCTACATGT+GGG | - | chr5_4:8145306-8145325 | None:intergenic | 35.0% |
| ! | AAAACTTTGGCTTCTACATG+TGG | - | chr5_4:8145307-8145326 | None:intergenic | 35.0% |
| ! | ACATGTAGAAGCCAAAGTTT+TGG | + | chr5_4:8145306-8145325 | Msa0834860:CDS | 35.0% |
| ! | GGGACTTTTGCTCAAAATAT+TGG | + | chr5_4:8145369-8145388 | Msa0834860:CDS | 35.0% |
| ! | AATAACAGTGTCCTACCTTT+TGG | + | chr5_4:8145424-8145443 | Msa0834860:CDS | 35.0% |
| ! | ATAACAGTGTCCTACCTTTT+GGG | + | chr5_4:8145425-8145444 | Msa0834860:CDS | 35.0% |
| !!! | TATGAAAGTGTCCTACCTTT+TGG | + | chr5_4:8145573-8145592 | Msa0834860:intron | 35.0% |
| !!! | ATGAAAGTGTCCTACCTTTT+GGG | + | chr5_4:8145574-8145593 | Msa0834860:intron | 35.0% |
| TCGGGATTATTCTAATAGTG+CGG | - | chr5_4:8145756-8145775 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | + | chr5_4:8145882-8145901 | Msa0834860:intron | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | + | chr5_4:8145883-8145902 | Msa0834860:intron | 35.0% | |
| ATGATTAGGTAACTAAGCCA+TGG | + | chr5_4:8146001-8146020 | Msa0834860:intron | 35.0% | |
| TGATTAGGTAACTAAGCCAT+GGG | + | chr5_4:8146002-8146021 | Msa0834860:intron | 35.0% | |
| TCAATGAAGCCTCGAAATTT+AGG | - | chr5_4:8146310-8146329 | None:intergenic | 35.0% | |
| ACCTTAATTTAGACTGCTTG+GGG | + | chr5_4:8146331-8146350 | Msa0834860:intron | 35.0% | |
| ATTGAAAAGGACACAAGAAG+GGG | - | chr5_4:8147012-8147031 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCAGATGGGAAC+GGG | + | chr5_4:8147194-8147213 | Msa0834860:intron | 35.0% |
| TAATTGTCCTAACGTGAATG+TGG | + | chr5_4:8147281-8147300 | Msa0834860:exon | 35.0% | |
| TATTGTTGCATCTACCATTG+GGG | - | chr5_4:8147307-8147326 | None:intergenic | 35.0% | |
| ! | ATTTTATCATGCTCACTCTG+TGG | + | chr5_4:8147459-8147478 | Msa0834860:three_prime_UTR | 35.0% |
| !! | ATAGCACGGTTTCTAGTTTC+TGG | - | chr5_4:8142092-8142111 | None:intergenic | 40.0% |
| CAAACTCATCATCAACTAGC+TGG | + | chr5_4:8142240-8142259 | Msa0834860:CDS | 40.0% | |
| AACTAGCTGGTTATCTGATC+TGG | + | chr5_4:8142253-8142272 | Msa0834860:CDS | 40.0% | |
| GTTCCAGCTATTGGAAGAAA+TGG | + | chr5_4:8142393-8142412 | Msa0834860:intron | 40.0% | |
| ACTACAAAGTCACAAGGACA+AGG | + | chr5_4:8142742-8142761 | Msa0834860:CDS | 40.0% | |
| CTACAAAGTCACAAGGACAA+GGG | + | chr5_4:8142743-8142762 | Msa0834860:CDS | 40.0% | |
| ! | TCTTATTCCTGGCTTGAAGA+AGG | + | chr5_4:8142858-8142877 | Msa0834860:CDS | 40.0% |
| TGTTTCCTTAACTAGTGTCC+TGG | + | chr5_4:8143453-8143472 | Msa0834860:intron | 40.0% | |
| GTTTCCTTAACTAGTGTCCT+GGG | + | chr5_4:8143454-8143473 | Msa0834860:intron | 40.0% | |
| TTTCCTTAACTAGTGTCCTG+GGG | + | chr5_4:8143455-8143474 | Msa0834860:intron | 40.0% | |
| ! | ATTGAAGTTTGCTTGCCTTG+AGG | - | chr5_4:8143782-8143801 | None:intergenic | 40.0% |
| CTAGAACATCAAATGTTGCG+TGG | + | chr5_4:8144037-8144056 | Msa0834860:intron | 40.0% | |
| CCATCTTCTATGTCTGACAA+AGG | - | chr5_4:8144768-8144787 | None:intergenic | 40.0% | |
| CCTTTGTCAGACATAGAAGA+TGG | + | chr5_4:8144765-8144784 | Msa0834860:intron | 40.0% | |
| TAGAAGATGGAAGCTGTTGA+TGG | + | chr5_4:8144778-8144797 | Msa0834860:intron | 40.0% | |
| CTAATACCCTCAAACGTTCT+TGG | - | chr5_4:8145162-8145181 | None:intergenic | 40.0% | |
| TCATGTTCAGTCTATGGTGA+CGG | + | chr5_4:8145204-8145223 | Msa0834860:CDS | 40.0% | |
| GATGAGTCAGAACTTAGTTG+TGG | - | chr5_4:8145238-8145257 | None:intergenic | 40.0% | |
| !!! | AGAAGCCAAAGTTTTGGACA+AGG | + | chr5_4:8145312-8145331 | Msa0834860:CDS | 40.0% |
| CACATCCTTGTCCAAAACTT+TGG | - | chr5_4:8145320-8145339 | None:intergenic | 40.0% | |
| ATCCACTGCCAAAAGCAAAA+GGG | + | chr5_4:8145349-8145368 | Msa0834860:CDS | 40.0% | |
| ! | GCAAAAGTCCCTTTTGCTTT+TGG | - | chr5_4:8145360-8145379 | None:intergenic | 40.0% |
| ! | TAACAGTGTCCTACCTTTTG+GGG | + | chr5_4:8145426-8145445 | Msa0834860:CDS | 40.0% |
| TCAAGGATAGAATCCCCAAA+AGG | - | chr5_4:8145442-8145461 | None:intergenic | 40.0% | |
| GAGCAACGATGGTTATATCA+AGG | - | chr5_4:8145459-8145478 | None:intergenic | 40.0% | |
| TGATATAACCATCGTTGCTC+AGG | + | chr5_4:8145459-8145478 | Msa0834860:CDS | 40.0% | |
| TTTCTTTACCTGAGCAACGA+TGG | - | chr5_4:8145470-8145489 | None:intergenic | 40.0% | |
| !!! | TGAAAGTGTCCTACCTTTTG+GGG | + | chr5_4:8145575-8145594 | Msa0834860:intron | 40.0% |
| TCAAGGATAGAATCCCCAAA+AGG | - | chr5_4:8145442-8145461 | None:intergenic | 40.0% | |
| GAGCAACGATGGTTATATCA+AGG | - | chr5_4:8145459-8145478 | None:intergenic | 40.0% | |
| TGATATAACCATCGTTGCTC+AGG | + | chr5_4:8145459-8145478 | Msa0834860:CDS | 40.0% | |
| TTTCTTTACCTGAGCAACGA+TGG | - | chr5_4:8145470-8145489 | None:intergenic | 40.0% | |
| GATTAGGTAACTAAGCCATG+GGG | + | chr5_4:8146003-8146022 | Msa0834860:intron | 40.0% | |
| ! | TGCTTGGGGCATTTATTCAA+TGG | + | chr5_4:8146345-8146364 | Msa0834860:intron | 40.0% |
| TGAAACAGGGGAGTAAATAG+AGG | + | chr5_4:8146529-8146548 | Msa0834860:intron | 40.0% | |
| TGCTTGTGAAAAGGAGAACA+AGG | - | chr5_4:8146639-8146658 | None:intergenic | 40.0% | |
| TTGAAAAGGACACAAGAAGG+GGG | - | chr5_4:8147011-8147030 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGCAGATGGGAACG+GGG | + | chr5_4:8147195-8147214 | Msa0834860:intron | 40.0% |
| TCTTGTGAAAAAGCTACGTG+TGG | + | chr5_4:8147238-8147257 | Msa0834860:CDS | 40.0% | |
| ATTATGAGCCACAGACCTCT+TGG | - | chr5_4:8142770-8142789 | None:intergenic | 45.0% | |
| CCATATACCTTCTTCAAGCC+AGG | - | chr5_4:8142868-8142887 | None:intergenic | 45.0% | |
| ! | CCTGGCTTGAAGAAGGTATA+TGG | + | chr5_4:8142865-8142884 | Msa0834860:intron | 45.0% |
| TTCCTTAACTAGTGTCCTGG+GGG | + | chr5_4:8143456-8143475 | Msa0834860:intron | 45.0% | |
| TGAGCAACTAGAATTGACCC+TGG | - | chr5_4:8144616-8144635 | None:intergenic | 45.0% | |
| !! | GATGGAAGCTGTTGATGGTT+TGG | + | chr5_4:8144783-8144802 | Msa0834860:intron | 45.0% |
| CGTACTTGATTGCATCTCCT+AGG | - | chr5_4:8145129-8145148 | None:intergenic | 45.0% | |
| AAGAGCTCCAAGAACGTTTG+AGG | + | chr5_4:8145152-8145171 | Msa0834860:CDS | 45.0% | |
| AGAGCTCCAAGAACGTTTGA+GGG | + | chr5_4:8145153-8145172 | Msa0834860:CDS | 45.0% | |
| !! | GATGATTCTGAAGCTGCTAG+TGG | + | chr5_4:8145265-8145284 | Msa0834860:CDS | 45.0% |
| TGGACAAGGATGTGCTCATA+AGG | + | chr5_4:8145326-8145345 | Msa0834860:CDS | 45.0% | |
| GATCCACTGCCAAAAGCAAA+AGG | + | chr5_4:8145348-8145367 | Msa0834860:CDS | 45.0% | |
| GGATAGAATCCCCAAAAGGT+AGG | - | chr5_4:8145438-8145457 | None:intergenic | 45.0% | |
| GGATAGAATCCCCAAAAGGT+AGG | - | chr5_4:8145438-8145457 | None:intergenic | 45.0% | |
| AATCCCGAGCATCTTAAGCT+AGG | + | chr5_4:8145768-8145787 | Msa0834860:intron | 45.0% | |
| TGGTCCTAGCTTAAGATGCT+CGG | - | chr5_4:8145775-8145794 | None:intergenic | 45.0% | |
| ! | ATGCGGTTTTCTTCATCCGA+TGG | + | chr5_4:8145821-8145840 | Msa0834860:intron | 45.0% |
| ! | AAGGACCACTTTGGGAAGAA+CGG | + | chr5_4:8145891-8145910 | Msa0834860:intron | 45.0% |
| ! | GTTTTCCGTTCTTCCCAAAG+TGG | - | chr5_4:8145899-8145918 | None:intergenic | 45.0% |
| CGAAACATGTTCAGTCAGCA+CGG | - | chr5_4:8146039-8146058 | None:intergenic | 45.0% | |
| GCCCCAAGCAGTCTAAATTA+AGG | - | chr5_4:8146335-8146354 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTAAATAGTTTAA+GGG | - | chr5_4:8143688-8143707 | None:intergenic | 5.0% |
| !!! | ATTATTTTTTAAATAGTTTA+AGG | - | chr5_4:8143689-8143708 | None:intergenic | 5.0% |
| !! | AATTAAATTATATTTATTTG+AGG | + | chr5_4:8146274-8146293 | Msa0834860:intron | 5.0% |
| GAGGTCTGTGGCTCATAATC+AGG | + | chr5_4:8142771-8142790 | Msa0834860:CDS | 50.0% | |
| GCTCTAGCTGCTCTTATTCC+TGG | + | chr5_4:8142847-8142866 | Msa0834860:CDS | 50.0% | |
| TCTTGTTAACTAGTGCCCCC+AGG | - | chr5_4:8143474-8143493 | None:intergenic | 50.0% | |
| ATGGACAAGGCTTCAGTCCT+AGG | + | chr5_4:8145109-8145128 | Msa0834860:CDS | 50.0% | |
| !! | GTCCCTTTTGCTTTTGGCAG+TGG | - | chr5_4:8145354-8145373 | None:intergenic | 50.0% |
| GGTCCTAGCTTAAGATGCTC+GGG | - | chr5_4:8145774-8145793 | None:intergenic | 50.0% | |
| ATTGGGGCCACATTCACGTT+AGG | - | chr5_4:8147291-8147310 | None:intergenic | 50.0% | |
| TAACGTGAATGTGGCCCCAA+TGG | + | chr5_4:8147290-8147309 | Msa0834860:three_prime_UTR | 50.0% | |
| CACAAGGACAAGGGACCAAG+AGG | + | chr5_4:8142752-8142771 | Msa0834860:CDS | 55.0% | |
| ACAAGGGACCAAGAGGTCTG+TGG | + | chr5_4:8142759-8142778 | Msa0834860:CDS | 55.0% | |
| TGCCCCCAGGACACTAGTTA+AGG | - | chr5_4:8143461-8143480 | None:intergenic | 55.0% | |
| CACGGTTTCAATGCACCCCA+TGG | - | chr5_4:8146021-8146040 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8142074 | 8147708 | 8142074 | ID=Msa0834860;Name=Msa0834860 |
| chr5_4 | mRNA | 8142074 | 8147708 | 8142074 | ID=Msa0834860-mRNA-1;Parent=Msa0834860;Name=Msa0834860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|1|1|1|1|1|4|425|328 |
| chr5_4 | exon | 8142074 | 8142274 | 8142074 | ID=Msa0834860-mRNA-1:exon:3615;Parent=Msa0834860-mRNA-1 |
| chr5_4 | exon | 8142400 | 8142879 | 8142400 | ID=Msa0834860-mRNA-1:exon:3616;Parent=Msa0834860-mRNA-1 |
| chr5_4 | exon | 8145109 | 8145480 | 8145109 | ID=Msa0834860-mRNA-1:exon:3617;Parent=Msa0834860-mRNA-1 |
| chr5_4 | exon | 8147206 | 8147708 | 8147206 | ID=Msa0834860-mRNA-1:exon:3618;Parent=Msa0834860-mRNA-1 |
| chr5_4 | five_prime_UTR | 8142074 | 8142217 | 8142074 | ID=Msa0834860-mRNA-1:five_prime_utr;Parent=Msa0834860-mRNA-1 |
| chr5_4 | CDS | 8142218 | 8142274 | 8142218 | ID=Msa0834860-mRNA-1:cds;Parent=Msa0834860-mRNA-1 |
| chr5_4 | CDS | 8142400 | 8142879 | 8142400 | ID=Msa0834860-mRNA-1:cds;Parent=Msa0834860-mRNA-1 |
| chr5_4 | CDS | 8145109 | 8145480 | 8145109 | ID=Msa0834860-mRNA-1:cds;Parent=Msa0834860-mRNA-1 |
| chr5_4 | CDS | 8147206 | 8147283 | 8147206 | ID=Msa0834860-mRNA-1:cds;Parent=Msa0834860-mRNA-1 |
| chr5_4 | three_prime_UTR | 8147284 | 8147708 | 8147284 | ID=Msa0834860-mRNA-1:three_prime_utr;Parent=Msa0834860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
