Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797350 | sp|Q9T072|BH025_ARATH | 39.940 | 333 | 164 | 12 | 12 | 322 | 5 | 323 | 4.08e-53 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797350 | G7K125 | 91.892 | 333 | 20 | 2 | 1 | 327 | 1 | 332 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0797350 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102750 | Msa0797350 | 0.804392 | 2.208238e-49 | -8.615850e-47 |
| Msa0634640 | Msa0797350 | 0.804148 | 2.482048e-49 | -8.615850e-47 |
| Msa0658570 | Msa0797350 | 0.804986 | 1.660169e-49 | -8.615850e-47 |
| Msa0659510 | Msa0797350 | 0.804648 | 1.952480e-49 | -8.615850e-47 |
| Msa0664850 | Msa0797350 | 0.829921 | 3.926666e-55 | -8.615850e-47 |
| Msa0703490 | Msa0797350 | 0.808516 | 2.979894e-50 | -8.615850e-47 |
| Msa0713620 | Msa0797350 | 0.843902 | 1.052903e-58 | -8.615850e-47 |
| Msa0713640 | Msa0797350 | 0.800829 | 1.199437e-48 | -8.615850e-47 |
| Msa0730270 | Msa0797350 | 0.847868 | 8.804732e-60 | -8.615850e-47 |
| Msa0754680 | Msa0797350 | 0.976694 | 2.556916e-142 | -8.615850e-47 |
| Msa0770580 | Msa0797350 | 0.831914 | 1.274309e-55 | -8.615850e-47 |
| Msa0797350 | Msa0834860 | 0.935005 | 1.672026e-96 | -8.615850e-47 |
| Msa0797350 | Msa0834880 | 0.811103 | 8.277675e-51 | -8.615850e-47 |
| Msa0797350 | Msa0849330 | 0.806591 | 7.635915e-50 | -8.615850e-47 |
| Msa0797350 | Msa0868020 | 0.852899 | 3.409735e-61 | -8.615850e-47 |
| Msa0797350 | Msa0964130 | 0.807891 | 4.049792e-50 | -8.615850e-47 |
| Msa0797350 | Msa0975420 | 0.811533 | 6.674836e-51 | -8.615850e-47 |
| Msa0797350 | Msa1009020 | 0.818566 | 1.833564e-52 | -8.615850e-47 |
| Msa0797350 | Msa1127770 | 0.808463 | 3.059936e-50 | -8.615850e-47 |
| Msa0797350 | Msa1155560 | 0.812806 | 3.521782e-51 | -8.615850e-47 |
| Msa0797350 | Msa1194460 | 0.801540 | 8.578886e-49 | -8.615850e-47 |
| Msa0797350 | Msa1227600 | 0.823035 | 1.719969e-53 | -8.615850e-47 |
| Msa0797350 | Msa1267610 | 0.804472 | 2.125512e-49 | -8.615850e-47 |
| Msa0797350 | Msa1291580 | -0.803848 | 2.866062e-49 | -8.615850e-47 |
| Msa0797350 | Msa1341570 | 0.858698 | 6.889202e-63 | -8.615850e-47 |
| Msa0797350 | Msa1376890 | 0.801316 | 9.537555e-49 | -8.615850e-47 |
| Msa0797350 | Msa1387130 | 0.813541 | 2.429339e-51 | -8.615850e-47 |
| Msa0797350 | Msa1397890 | 0.811974 | 5.352147e-51 | -8.615850e-47 |
| Msa0216310 | Msa0797350 | 0.826040 | 3.373470e-54 | -8.615850e-47 |
| Msa0387090 | Msa0797350 | 0.804618 | 1.981450e-49 | -8.615850e-47 |
| Msa0448550 | Msa0797350 | -0.805443 | 1.331793e-49 | -8.615850e-47 |
| Msa0256510 | Msa0797350 | 0.846275 | 2.406228e-59 | -8.615850e-47 |
| Msa0260820 | Msa0797350 | -0.805194 | 1.501608e-49 | -8.615850e-47 |
| Msa0266000 | Msa0797350 | -0.807924 | 3.984786e-50 | -8.615850e-47 |
| Msa0272730 | Msa0797350 | 0.803187 | 3.928444e-49 | -8.615850e-47 |
| Msa0279640 | Msa0797350 | 0.813507 | 2.471106e-51 | -8.615850e-47 |
| Msa0334350 | Msa0797350 | 0.844890 | 5.713189e-59 | -8.615850e-47 |
| Msa0356890 | Msa0797350 | -0.818707 | 1.702887e-52 | -8.615850e-47 |
| Msa0483650 | Msa0797350 | 0.806906 | 6.551637e-50 | -8.615850e-47 |
| Msa0567020 | Msa0797350 | 0.810278 | 1.247960e-50 | -8.615850e-47 |
| Msa0577060 | Msa0797350 | 0.804181 | 2.443235e-49 | -8.615850e-47 |
| Msa0586910 | Msa0797350 | 0.844707 | 6.399774e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797350 | MtrunA17_Chr5g0400621 | 91.892 | 333 | 20 | 2 | 1 | 327 | 1 | 332 | 0.0 | 523 |
| Msa0797350 | MtrunA17_Chr5g0400641 | 74.522 | 157 | 39 | 1 | 154 | 310 | 1 | 156 | 9.97e-77 | 232 |
| Msa0797350 | MtrunA17_Chr2g0307131 | 43.536 | 379 | 137 | 15 | 1 | 327 | 1 | 354 | 3.48e-71 | 224 |
| Msa0797350 | MtrunA17_Chr4g0033291 | 47.003 | 317 | 124 | 12 | 36 | 325 | 26 | 325 | 1.42e-68 | 217 |
| Msa0797350 | MtrunA17_Chr6g0468491 | 46.177 | 327 | 124 | 14 | 36 | 327 | 3 | 312 | 3.25e-68 | 216 |
| Msa0797350 | MtrunA17_Chr4g0054581 | 40.554 | 397 | 146 | 14 | 1 | 327 | 1 | 377 | 5.35e-68 | 217 |
| Msa0797350 | MtrunA17_Chr4g0033281 | 44.575 | 341 | 158 | 12 | 1 | 327 | 1 | 324 | 6.17e-68 | 216 |
| Msa0797350 | MtrunA17_Chr4g0054621 | 43.910 | 312 | 133 | 8 | 43 | 327 | 44 | 340 | 1.40e-66 | 212 |
| Msa0797350 | MtrunA17_Chr4g0033391 | 45.223 | 314 | 126 | 11 | 36 | 325 | 26 | 317 | 3.08e-66 | 211 |
| Msa0797350 | MtrunA17_Chr2g0307141 | 41.270 | 378 | 151 | 13 | 1 | 327 | 1 | 358 | 6.28e-63 | 204 |
| Msa0797350 | MtrunA17_Chr2g0280161 | 52.432 | 185 | 86 | 1 | 138 | 322 | 166 | 348 | 8.13e-58 | 190 |
| Msa0797350 | MtrunA17_Chr6g0468461 | 42.857 | 343 | 129 | 15 | 1 | 306 | 1 | 313 | 1.08e-56 | 187 |
| Msa0797350 | MtrunA17_Chr4g0049331 | 51.323 | 189 | 87 | 2 | 134 | 320 | 118 | 303 | 3.03e-56 | 185 |
| Msa0797350 | MtrunA17_Chr5g0400661 | 39.888 | 356 | 154 | 13 | 6 | 324 | 2 | 334 | 7.35e-56 | 184 |
| Msa0797350 | MtrunA17_Chr7g0225901 | 57.303 | 178 | 66 | 6 | 134 | 306 | 70 | 242 | 1.70e-54 | 178 |
| Msa0797350 | MtrunA17_Chr2g0333621 | 44.770 | 239 | 113 | 6 | 96 | 324 | 82 | 311 | 1.19e-53 | 178 |
| Msa0797350 | MtrunA17_Chr4g0054571 | 45.985 | 274 | 115 | 9 | 77 | 322 | 59 | 327 | 1.86e-53 | 178 |
| Msa0797350 | MtrunA17_Chr4g0002801 | 43.028 | 251 | 122 | 6 | 86 | 325 | 91 | 331 | 3.41e-53 | 177 |
| Msa0797350 | MtrunA17_Chr2g0333641 | 40.893 | 291 | 138 | 10 | 42 | 319 | 33 | 302 | 6.48e-51 | 171 |
| Msa0797350 | MtrunA17_Chr4g0002781 | 42.913 | 254 | 124 | 6 | 85 | 325 | 105 | 350 | 1.40e-49 | 169 |
| Msa0797350 | MtrunA17_Chr4g0054561 | 40.433 | 277 | 150 | 7 | 51 | 319 | 51 | 320 | 4.19e-49 | 167 |
| Msa0797350 | MtrunA17_Chr8g0336681 | 41.631 | 233 | 125 | 3 | 96 | 320 | 102 | 331 | 9.55e-49 | 166 |
| Msa0797350 | MtrunA17_Chr5g0400671 | 43.564 | 202 | 109 | 2 | 123 | 324 | 127 | 323 | 5.98e-46 | 158 |
| Msa0797350 | MtrunA17_Chr4g0054551 | 38.267 | 277 | 156 | 7 | 51 | 319 | 51 | 320 | 2.04e-45 | 157 |
| Msa0797350 | MtrunA17_Chr2g0333611 | 44.199 | 181 | 90 | 4 | 144 | 320 | 38 | 211 | 1.38e-42 | 146 |
| Msa0797350 | MtrunA17_Chr7g0249811 | 44.324 | 185 | 93 | 1 | 136 | 320 | 150 | 324 | 2.43e-41 | 147 |
| Msa0797350 | MtrunA17_Chr2g0333541 | 42.784 | 194 | 106 | 4 | 134 | 323 | 75 | 267 | 1.15e-40 | 143 |
| Msa0797350 | MtrunA17_Chr7g0233441 | 48.993 | 149 | 65 | 1 | 174 | 322 | 57 | 194 | 8.74e-39 | 136 |
| Msa0797350 | MtrunA17_Chr4g0002831 | 44.706 | 170 | 81 | 4 | 154 | 322 | 45 | 202 | 4.21e-36 | 129 |
| Msa0797350 | MtrunA17_Chr4g0002851 | 49.664 | 149 | 56 | 2 | 174 | 322 | 65 | 194 | 4.79e-36 | 129 |
| Msa0797350 | MtrunA17_Chr1g0185621 | 31.447 | 159 | 101 | 2 | 134 | 285 | 459 | 616 | 2.97e-19 | 88.6 |
| Msa0797350 | MtrunA17_Chr7g0275821 | 29.412 | 170 | 108 | 3 | 151 | 319 | 252 | 410 | 3.57e-16 | 79.0 |
| Msa0797350 | MtrunA17_Chr8g0366751 | 36.913 | 149 | 82 | 4 | 151 | 288 | 462 | 609 | 4.97e-15 | 75.9 |
| Msa0797350 | MtrunA17_Chr5g0411341 | 30.337 | 178 | 93 | 5 | 151 | 308 | 493 | 659 | 1.01e-14 | 75.1 |
| Msa0797350 | MtrunA17_Chr1g0211081 | 32.020 | 203 | 118 | 9 | 46 | 231 | 201 | 400 | 9.68e-14 | 72.0 |
| Msa0797350 | MtrunA17_Chr8g0365711 | 26.842 | 190 | 111 | 5 | 124 | 301 | 225 | 398 | 1.78e-13 | 70.9 |
| Msa0797350 | MtrunA17_Chr8g0346151 | 26.061 | 165 | 113 | 3 | 101 | 260 | 231 | 391 | 7.61e-13 | 68.9 |
| Msa0797350 | MtrunA17_Chr8g0346161 | 29.032 | 155 | 100 | 4 | 112 | 263 | 256 | 403 | 2.86e-12 | 67.4 |
| Msa0797350 | MtrunA17_Chr7g0260841 | 50.000 | 56 | 28 | 0 | 151 | 206 | 355 | 410 | 4.92e-12 | 66.6 |
| Msa0797350 | MtrunA17_Chr0c01g0489461 | 26.347 | 167 | 101 | 4 | 152 | 296 | 197 | 363 | 1.07e-11 | 65.5 |
| Msa0797350 | MtrunA17_Chr3g0131691 | 28.571 | 175 | 112 | 5 | 134 | 298 | 283 | 454 | 3.96e-11 | 63.9 |
| Msa0797350 | MtrunA17_Chr2g0298751 | 26.543 | 162 | 107 | 3 | 152 | 301 | 53 | 214 | 6.58e-11 | 61.6 |
| Msa0797350 | MtrunA17_Chr7g0270871 | 44.156 | 77 | 42 | 1 | 128 | 203 | 188 | 264 | 9.57e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797350 | AT4G37850.2 | 39.940 | 333 | 164 | 12 | 12 | 322 | 5 | 323 | 4.15e-54 | 180 |
| Msa0797350 | AT4G37850.1 | 39.940 | 333 | 164 | 12 | 12 | 322 | 5 | 323 | 4.15e-54 | 180 |
| Msa0797350 | AT2G22760.1 | 43.842 | 203 | 91 | 5 | 139 | 324 | 99 | 295 | 8.58e-46 | 157 |
| Msa0797350 | AT2G22750.5 | 44.033 | 243 | 117 | 7 | 89 | 319 | 86 | 321 | 3.42e-44 | 154 |
| Msa0797350 | AT2G22750.2 | 44.033 | 243 | 117 | 7 | 89 | 319 | 62 | 297 | 3.52e-44 | 154 |
| Msa0797350 | AT2G22750.3 | 36.158 | 354 | 159 | 11 | 4 | 319 | 1 | 325 | 9.44e-44 | 153 |
| Msa0797350 | AT2G22750.1 | 44.033 | 243 | 116 | 8 | 89 | 319 | 62 | 296 | 8.52e-43 | 150 |
| Msa0797350 | AT2G22750.4 | 36.158 | 354 | 158 | 12 | 4 | 319 | 1 | 324 | 3.66e-42 | 149 |
| Msa0797350 | AT2G22760.2 | 45.055 | 182 | 78 | 4 | 139 | 304 | 99 | 274 | 7.70e-42 | 147 |
| Msa0797350 | AT2G22770.1 | 39.592 | 245 | 123 | 6 | 95 | 322 | 81 | 317 | 1.15e-41 | 147 |
| Msa0797350 | AT4G09820.1 | 34.109 | 129 | 61 | 2 | 152 | 280 | 364 | 468 | 1.04e-15 | 78.2 |
| Msa0797350 | AT2G46510.1 | 32.331 | 133 | 69 | 3 | 130 | 260 | 372 | 485 | 2.76e-15 | 77.0 |
| Msa0797350 | AT4G17880.1 | 31.250 | 160 | 104 | 3 | 151 | 308 | 416 | 571 | 4.72e-15 | 76.3 |
| Msa0797350 | AT3G61950.6 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 1.05e-14 | 73.9 |
| Msa0797350 | AT2G16910.1 | 32.258 | 155 | 84 | 4 | 152 | 285 | 315 | 469 | 1.28e-14 | 75.1 |
| Msa0797350 | AT5G46760.1 | 30.769 | 169 | 97 | 4 | 151 | 308 | 415 | 574 | 1.38e-14 | 75.1 |
| Msa0797350 | AT3G61950.3 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 1.89e-14 | 73.6 |
| Msa0797350 | AT1G32640.1 | 32.331 | 133 | 90 | 0 | 151 | 283 | 452 | 584 | 2.17e-14 | 74.3 |
| Msa0797350 | AT1G01260.1 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 2.33e-14 | 74.3 |
| Msa0797350 | AT1G01260.2 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 2.33e-14 | 74.3 |
| Msa0797350 | AT1G01260.3 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 2.33e-14 | 74.3 |
| Msa0797350 | AT3G61950.2 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 2.67e-14 | 72.8 |
| Msa0797350 | AT3G61950.1 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 3.57e-14 | 72.8 |
| Msa0797350 | AT2G28160.1 | 28.571 | 175 | 102 | 5 | 135 | 296 | 115 | 279 | 1.63e-12 | 67.8 |
| Msa0797350 | AT2G28160.2 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.82e-12 | 67.4 |
| Msa0797350 | AT1G63650.3 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.15e-12 | 68.2 |
| Msa0797350 | AT1G63650.1 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.15e-12 | 68.2 |
| Msa0797350 | AT1G63650.2 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.15e-12 | 68.2 |
| Msa0797350 | AT3G24140.2 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 3.09e-12 | 67.4 |
| Msa0797350 | AT4G16430.1 | 50.000 | 58 | 29 | 0 | 151 | 208 | 320 | 377 | 3.13e-12 | 67.4 |
| Msa0797350 | AT3G24140.1 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 3.17e-12 | 67.4 |
| Msa0797350 | AT1G12860.2 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 6.95e-12 | 66.2 |
| Msa0797350 | AT1G12860.1 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 8.10e-12 | 66.2 |
| Msa0797350 | AT5G41315.2 | 29.310 | 174 | 96 | 7 | 151 | 300 | 449 | 619 | 1.08e-11 | 66.2 |
| Msa0797350 | AT5G41315.3 | 29.310 | 174 | 96 | 7 | 151 | 300 | 446 | 616 | 1.16e-11 | 66.2 |
| Msa0797350 | AT5G41315.1 | 29.310 | 174 | 96 | 7 | 151 | 300 | 441 | 611 | 1.21e-11 | 65.9 |
| Msa0797350 | AT4G30980.1 | 28.177 | 181 | 111 | 3 | 100 | 270 | 82 | 253 | 1.61e-11 | 64.7 |
| Msa0797350 | AT4G30980.2 | 28.571 | 182 | 109 | 4 | 100 | 270 | 130 | 301 | 2.74e-11 | 64.3 |
| Msa0797350 | AT5G57150.2 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 8.63e-11 | 61.6 |
| Msa0797350 | AT5G57150.3 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 9.54e-11 | 61.2 |
Find 69 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCACGGTTTCTAGTTTC+TGG | 0.209923 | 5_3:-9455414 | None:intergenic |
| TTATCCTTTAGAAAAGAATT+TGG | 0.226485 | 5_3:+9455889 | Msa0797350:CDS |
| CTAATACCCTCAAACGTTCT+TGG | 0.234491 | 5_3:-9458491 | None:intergenic |
| AGTCTTGTTCTATGATAAAT+TGG | 0.239847 | 5_3:+9455455 | Msa0797350:five_prime_UTR |
| AATCACATCAATAGTCATTA+TGG | 0.256413 | 5_3:+9455524 | Msa0797350:exon |
| AATAACAGTGTCCTACCTTT+TGG | 0.259096 | 5_3:+9458756 | Msa0797350:CDS |
| TGAGAATATATACATATAAT+TGG | 0.261698 | 5_3:+9461125 | Msa0797350:three_prime_UTR |
| GCTCTAGCTGCTCTTATTCC+TGG | 0.270587 | 5_3:+9456172 | Msa0797350:CDS |
| TCTTTCTCTCTGCTATGATA+TGG | 0.318056 | 5_3:-9456120 | None:intergenic |
| TCAAATAATAGATTAAGATT+TGG | 0.321285 | 5_3:+9461181 | Msa0797350:three_prime_UTR |
| GTTCCAGCTATTGGAAGAAA+TGG | 0.343234 | 5_3:+9455718 | Msa0797350:intron |
| TGTTTCACAATTTAAGAGAT+TGG | 0.357280 | 5_3:-9455482 | None:intergenic |
| CACATCCTTGTCCAAAACTT+TGG | 0.362806 | 5_3:-9458649 | None:intergenic |
| TAATAGTCATGTTCAGTCTA+TGG | 0.373573 | 5_3:+9458530 | Msa0797350:CDS |
| ACATGTAGAAGCCAAAGTTT+TGG | 0.403189 | 5_3:+9458638 | Msa0797350:CDS |
| GGTAATTGTGTTTGTGAGAA+TGG | 0.404374 | 5_3:-9456001 | None:intergenic |
| AACTAGCTGGTTCTCTGATC+TGG | 0.410176 | 5_3:+9455578 | Msa0797350:CDS |
| GAGGTCTGTGGCTCATAATC+AGG | 0.412438 | 5_3:+9456096 | Msa0797350:CDS |
| TTACGTAGTTAATAAGTGTT+TGG | 0.415950 | 5_3:-9460914 | None:intergenic |
| ATTATTGTTGCATCTACCAT+TGG | 0.417026 | 5_3:-9460864 | None:intergenic |
| TTATTGTTGCATCTACCATT+GGG | 0.417570 | 5_3:-9460863 | None:intergenic |
| CAACGTGAACAAAACTTGTA+TGG | 0.426153 | 5_3:+9455767 | Msa0797350:CDS |
| TGGACAAGGATGTGCTCATA+AGG | 0.429386 | 5_3:+9458658 | Msa0797350:CDS |
| ATTGGAAGAAATGGAAATAG+AGG | 0.434159 | 5_3:+9455727 | Msa0797350:CDS |
| ATGGACAAGGCTTCAGTCCT+AGG | 0.441208 | 5_3:+9458441 | Msa0797350:CDS |
| AAGATAACAAAGGTTGATGT+TGG | 0.458857 | 5_3:-9455847 | None:intergenic |
| TTTCTGGTCAATTTACTTCG+AGG | 0.459169 | 5_3:-9455398 | None:intergenic |
| TAATACTATTCGTGTCATCT+TGG | 0.462966 | 5_3:+9460954 | Msa0797350:three_prime_UTR |
| TGATATAACCATCGTTGCTC+AGG | 0.464649 | 5_3:+9458791 | Msa0797350:CDS |
| GATCCACTGCCAAAAGCAAA+AGG | 0.466058 | 5_3:+9458680 | Msa0797350:CDS |
| CAATTACCTCGAAATAGAAA+AGG | 0.474445 | 5_3:+9456016 | Msa0797350:CDS |
| TCTTATTCCTGGCTTGAAGA+AGG | 0.494711 | 5_3:+9456183 | Msa0797350:CDS |
| TTCGTATCCTCTTTATAGCA+CGG | 0.499454 | 5_3:-9455428 | None:intergenic |
| AGTGAGCATGATAAAATCAA+TGG | 0.502461 | 5_3:-9461015 | None:intergenic |
| TTCTTCAGAAGTCATTATGT+AGG | 0.503771 | 5_3:-9460978 | None:intergenic |
| CTAGAAACCGTGCTATAAAG+AGG | 0.506207 | 5_3:+9455421 | Msa0797350:five_prime_UTR |
| ATTATGAGCCACAGACCTCT+TGG | 0.506300 | 5_3:-9456092 | None:intergenic |
| ATTGGGGCCACATTCACGTT+AGG | 0.508391 | 5_3:-9460846 | None:intergenic |
| ATGATAAAATCAATGGTTCA+TGG | 0.513260 | 5_3:-9461008 | None:intergenic |
| CCATATACCTTCTTCAAGCC+AGG | 0.514414 | 5_3:-9456190 | None:intergenic |
| CGTACTTGATTGCATCTCCT+AGG | 0.518134 | 5_3:-9458458 | None:intergenic |
| AAGAGCTCCAAGAACGTTTG+AGG | 0.518931 | 5_3:+9458484 | Msa0797350:CDS |
| TCTTCAGAAGTCATTATGTA+GGG | 0.533712 | 5_3:-9460977 | None:intergenic |
| CAAACTCATCATCAACTAGC+TGG | 0.535900 | 5_3:+9455565 | Msa0797350:CDS |
| TCATATGATATGATCATGGA+TGG | 0.547499 | 5_3:+9460886 | Msa0797350:three_prime_UTR |
| ATAATCATATGATATGATCA+TGG | 0.548325 | 5_3:+9460882 | Msa0797350:three_prime_UTR |
| AAAACTTTGGCTTCTACATG+TGG | 0.548591 | 5_3:-9458636 | None:intergenic |
| AATTACCTCGAAATAGAAAA+GGG | 0.550335 | 5_3:+9456017 | Msa0797350:CDS |
| GAGCAACGATGGTTATATCA+AGG | 0.552186 | 5_3:-9458788 | None:intergenic |
| TAACGTGAATGTGGCCCCAA+TGG | 0.567361 | 5_3:+9460848 | Msa0797350:three_prime_UTR |
| AGAGCTCCAAGAACGTTTGA+GGG | 0.570082 | 5_3:+9458485 | Msa0797350:CDS |
| TCAAGGATAGAATCCCCAAA+AGG | 0.575129 | 5_3:-9458771 | None:intergenic |
| ATCCACTGCCAAAAGCAAAA+GGG | 0.579077 | 5_3:+9458681 | Msa0797350:CDS |
| GATGAGTCAGAACTTAGTTG+TGG | 0.581816 | 5_3:-9458567 | None:intergenic |
| TTTATTTACCTGAGCAACGA+TGG | 0.591261 | 5_3:-9458799 | None:intergenic |
| ACTACAAAGTCACAAGGACA+AGG | 0.603785 | 5_3:+9456067 | Msa0797350:CDS |
| GGATAGAATCCCCAAAAGGT+AGG | 0.609941 | 5_3:-9458767 | None:intergenic |
| TCATGTTCAGTCTATGGTGA+CGG | 0.614450 | 5_3:+9458536 | Msa0797350:CDS |
| TATTGTTGCATCTACCATTG+GGG | 0.619577 | 5_3:-9460862 | None:intergenic |
| TAATTGTCCTAACGTGAATG+TGG | 0.625906 | 5_3:+9460839 | Msa0797350:exon |
| AAACTTTGGCTTCTACATGT+GGG | 0.634166 | 5_3:-9458635 | None:intergenic |
| TTGGAAGAAATGGAAATAGA+GGG | 0.635754 | 5_3:+9455728 | Msa0797350:CDS |
| TAGCTTTCAGAAGATAACAA+AGG | 0.638184 | 5_3:-9455857 | None:intergenic |
| ACGTTAGGACAATTATAACA+TGG | 0.639666 | 5_3:-9460831 | None:intergenic |
| CACAAGGACAAGGGACCAAG+AGG | 0.647237 | 5_3:+9456077 | Msa0797350:CDS |
| ACAAGGGACCAAGAGGTCTG+TGG | 0.659567 | 5_3:+9456084 | Msa0797350:CDS |
| GATGATTCTGAAGCTGCTAG+TGG | 0.660614 | 5_3:+9458597 | Msa0797350:CDS |
| CTACAAAGTCACAAGGACAA+GGG | 0.698526 | 5_3:+9456068 | Msa0797350:CDS |
| GTTGAAACTACAAAGTCACA+AGG | 0.718556 | 5_3:+9456061 | Msa0797350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATATATAAAAATT+GGG | - | chr5_3:9456659-9456678 | None:intergenic | 0.0% |
| !! | ATAAATAAATATATAAAAAT+TGG | - | chr5_3:9456660-9456679 | None:intergenic | 0.0% |
| !!! | TTAAAAAATAATTTTATATT+AGG | + | chr5_3:9457025-9457044 | Msa0797350:intron | 0.0% |
| !!! | TTTTTTTTCAATTTTTTGTT+TGG | - | chr5_3:9455920-9455939 | None:intergenic | 10.0% |
| !!! | GTAATATTTTTTTCTATTTA+TGG | + | chr5_3:9456321-9456340 | Msa0797350:intron | 10.0% |
| !!! | TTTATTTATTGTTTTAGTTA+TGG | + | chr5_3:9456671-9456690 | Msa0797350:intron | 10.0% |
| !!! | ATCATTTTTAATTTAATAAC+AGG | + | chr5_3:9457196-9457215 | Msa0797350:intron | 10.0% |
| !!! | AAAATATTTTTCCAATATAA+AGG | + | chr5_3:9457428-9457447 | Msa0797350:intron | 10.0% |
| !!! | TATTTATCCATAATTATTTT+GGG | - | chr5_3:9457466-9457485 | None:intergenic | 10.0% |
| !!! | TTATTTATCCATAATTATTT+TGG | - | chr5_3:9457467-9457486 | None:intergenic | 10.0% |
| !! | AATTGAAATAATTATTATGT+TGG | - | chr5_3:9457625-9457644 | None:intergenic | 10.0% |
| !!! | CCAATTTTTTTTTTTTTTTA+CGG | - | chr5_3:9458329-9458348 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATTGGTATA+AGG | + | chr5_3:9458333-9458352 | Msa0797350:intron | 10.0% |
| !! | AAATTTAATAAAAGTTCATA+CGG | - | chr5_3:9458982-9459001 | None:intergenic | 10.0% |
| !!! | ACTTTTATTAAATTTAAATG+CGG | + | chr5_3:9458987-9459006 | Msa0797350:intron | 10.0% |
| !! | TACATTTATAAATATTGAAA+AGG | - | chr5_3:9460583-9460602 | None:intergenic | 10.0% |
| !! | TACATTTATAAATATAGAAA+AGG | - | chr5_3:9460613-9460632 | None:intergenic | 10.0% |
| !! | ACAATATCGAAATAATTTAT+TGG | + | chr5_3:9456516-9456535 | Msa0797350:intron | 15.0% |
| !!! | ATTTTTCATAGTTTAACTAA+CGG | - | chr5_3:9456831-9456850 | None:intergenic | 15.0% |
| !!! | AATACAAAATTTACTAGTTT+TGG | - | chr5_3:9456888-9456907 | None:intergenic | 15.0% |
| !! | ATTATTTCAATTTATGTACT+TGG | + | chr5_3:9457633-9457652 | Msa0797350:intron | 15.0% |
| !!! | TTTTCAACAAATTATATGTT+TGG | + | chr5_3:9457667-9457686 | Msa0797350:intron | 15.0% |
| !!! | ATTGATTTTAAATTGAAGTT+AGG | - | chr5_3:9457863-9457882 | None:intergenic | 15.0% |
| !! | CCGTAAAAAAAAAAAAAAAT+TGG | + | chr5_3:9458326-9458345 | Msa0797350:intron | 15.0% |
| !! | GATACTTTAAATGATTAAAA+AGG | - | chr5_3:9458861-9458880 | None:intergenic | 15.0% |
| !!! | GACTAAGATTATTATTATTT+TGG | - | chr5_3:9459130-9459149 | None:intergenic | 15.0% |
| !!! | TAGAGAATATTTCTATTTTT+AGG | - | chr5_3:9459391-9459410 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTGAATCTA+AGG | + | chr5_3:9459687-9459706 | Msa0797350:intron | 15.0% |
| !!! | AAGTCTAATATATTCTTTTA+AGG | - | chr5_3:9459750-9459769 | None:intergenic | 15.0% |
| !! | AAATTCCAAGAATTAAAAAA+TGG | + | chr5_3:9460010-9460029 | Msa0797350:intron | 15.0% |
| !!! | ATTTTTTGATAAAATGAAAC+AGG | + | chr5_3:9460073-9460092 | Msa0797350:intron | 15.0% |
| !!! | TTTTTTGATAAAATGAAACA+GGG | + | chr5_3:9460074-9460093 | Msa0797350:intron | 15.0% |
| !! | TTGATATGTGAAATTAATTA+AGG | + | chr5_3:9460226-9460245 | Msa0797350:intron | 15.0% |
| !! | AATTACAAAGAAATTAATCA+AGG | + | chr5_3:9460303-9460322 | Msa0797350:intron | 15.0% |
| !!! | TTGATTTGAGAAATTAATTA+AGG | + | chr5_3:9460664-9460683 | Msa0797350:intron | 15.0% |
| !! | TGAGAATATATACATATAAT+TGG | + | chr5_3:9461125-9461144 | Msa0797350:three_prime_UTR | 15.0% |
| !! | TCAAATAATAGATTAAGATT+TGG | + | chr5_3:9461181-9461200 | Msa0797350:three_prime_UTR | 15.0% |
| !! | AATTATATGCACAAATGAAA+TGG | + | chr5_3:9455650-9455669 | Msa0797350:intron | 20.0% |
| !!! | TTATCCTTTAGAAAAGAATT+TGG | + | chr5_3:9455889-9455908 | Msa0797350:CDS | 20.0% |
| !!! | TTTTCCAAATTCTTTTCTAA+AGG | - | chr5_3:9455896-9455915 | None:intergenic | 20.0% |
| !!! | CTTGTTCTTTTTTGTATTTA+AGG | - | chr5_3:9455975-9455994 | None:intergenic | 20.0% |
| !! | CTTAAATACAAAAAAGAACA+AGG | + | chr5_3:9455973-9455992 | Msa0797350:CDS | 20.0% |
| !!! | ATTTATTAAAAGTACTGAGA+TGG | + | chr5_3:9456238-9456257 | Msa0797350:intron | 20.0% |
| !!! | TTAAGCAAACATTTTTTTGA+AGG | - | chr5_3:9456294-9456313 | None:intergenic | 20.0% |
| !! | TGTACTAGTATTTATTATGT+AGG | + | chr5_3:9456369-9456388 | Msa0797350:intron | 20.0% |
| !! | GTACTAGTATTTATTATGTA+GGG | + | chr5_3:9456370-9456389 | Msa0797350:intron | 20.0% |
| !! | TTTATGAATCTTAAACAAAG+CGG | - | chr5_3:9456396-9456415 | None:intergenic | 20.0% |
| !! | TGGTTATAGTATAATTATCT+TGG | + | chr5_3:9456691-9456710 | Msa0797350:intron | 20.0% |
| !!! | TTTTTCATAGTTTAACTAAC+GGG | - | chr5_3:9456830-9456849 | None:intergenic | 20.0% |
| !! | TGTTATAAGAACATTGTTTA+AGG | - | chr5_3:9456980-9456999 | None:intergenic | 20.0% |
| !!! | GCTATTTGAATTAACTTTTA+AGG | + | chr5_3:9457170-9457189 | Msa0797350:intron | 20.0% |
| !!! | GAATTGTTTTTCCTTTATAT+TGG | - | chr5_3:9457442-9457461 | None:intergenic | 20.0% |
| !!! | TAAGTTTGTTTGTTCTTTAT+TGG | - | chr5_3:9457905-9457924 | None:intergenic | 20.0% |
| !! | TTCGTATGATGTTAATTAAT+TGG | + | chr5_3:9458004-9458023 | Msa0797350:intron | 20.0% |
| !! | GATGTTAATTAATTGGTATA+AGG | + | chr5_3:9458011-9458030 | Msa0797350:intron | 20.0% |
| !! | TAATTAATTGGTATAAGGTT+TGG | + | chr5_3:9458016-9458035 | Msa0797350:intron | 20.0% |
| !!! | TCTTTTTTTCTATCCAATTA+CGG | - | chr5_3:9458059-9458078 | None:intergenic | 20.0% |
| !! | ACTAGTTAGCTATTAATTAT+AGG | + | chr5_3:9458367-9458386 | Msa0797350:intron | 20.0% |
| !! | GTAAAAAAAAAATCTACAGA+TGG | + | chr5_3:9458422-9458441 | Msa0797350:intron | 20.0% |
| !!! | GTATAAATCGATTTTCTAAA+AGG | + | chr5_3:9459026-9459045 | Msa0797350:intron | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr5_3:9459195-9459214 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr5_3:9459196-9459215 | None:intergenic | 20.0% |
| !! | ATTCATTAATTTATGCCTTA+AGG | + | chr5_3:9459490-9459509 | Msa0797350:intron | 20.0% |
| !! | TTCATTAATTTATGCCTTAA+GGG | + | chr5_3:9459491-9459510 | Msa0797350:intron | 20.0% |
| !!! | CAAGGTTGATATATTTTTTA+AGG | - | chr5_3:9459533-9459552 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCCTAAATTTCG+AGG | + | chr5_3:9459856-9459875 | Msa0797350:intron | 20.0% |
| !!! | TACTTCCATTTTTTAATTCT+TGG | - | chr5_3:9460018-9460037 | None:intergenic | 20.0% |
| !!! | TTTTTGATAAAATGAAACAG+GGG | + | chr5_3:9460075-9460094 | Msa0797350:intron | 20.0% |
| !! | TACATTTATGAAGATTGAAA+GGG | - | chr5_3:9460173-9460192 | None:intergenic | 20.0% |
| !! | ATACATTTATGAAGATTGAA+AGG | - | chr5_3:9460174-9460193 | None:intergenic | 20.0% |
| !!! | ATCATCAACTTTTTTTTACA+AGG | - | chr5_3:9460540-9460559 | None:intergenic | 20.0% |
| !! | TCTCAAATCAATTGAAAATT+TGG | - | chr5_3:9460655-9460674 | None:intergenic | 20.0% |
| !! | ATAATCATATGATATGATCA+TGG | + | chr5_3:9460882-9460901 | Msa0797350:three_prime_UTR | 20.0% |
| !!! | AGTCTTGTTCTATGATAAAT+TGG | + | chr5_3:9455455-9455474 | Msa0797350:five_prime_UTR | 25.0% |
| ! | TGTTTCACAATTTAAGAGAT+TGG | - | chr5_3:9455485-9455504 | None:intergenic | 25.0% |
| ! | AATCACATCAATAGTCATTA+TGG | + | chr5_3:9455524-9455543 | Msa0797350:exon | 25.0% |
| !!! | AGAAAGTATTTTTCAACAAG+AGG | + | chr5_3:9455817-9455836 | Msa0797350:CDS | 25.0% |
| ! | AATTACCTCGAAATAGAAAA+GGG | + | chr5_3:9456017-9456036 | Msa0797350:CDS | 25.0% |
| ! | GGACATATTAATTTCATGTT+TGG | + | chr5_3:9456259-9456278 | Msa0797350:intron | 25.0% |
| ! | ATACTAGTACAAACTTAAAG+TGG | - | chr5_3:9456360-9456379 | None:intergenic | 25.0% |
| !! | TAATGCTAATTTGTACTCTT+AGG | - | chr5_3:9456636-9456655 | None:intergenic | 25.0% |
| !! | TTAATTTTCTTGAGTGAAAG+TGG | - | chr5_3:9457140-9457159 | None:intergenic | 25.0% |
| ! | CAATTCACCCAAAATAATTA+TGG | + | chr5_3:9457456-9457475 | Msa0797350:intron | 25.0% |
| !!! | TTATGTACTTGGTTTTGAAT+TGG | + | chr5_3:9457644-9457663 | Msa0797350:intron | 25.0% |
| ! | AAATTATATGTTTGGATCTG+CGG | + | chr5_3:9457675-9457694 | Msa0797350:intron | 25.0% |
| !! | ACTATTTAGGTTTGATATCA+TGG | - | chr5_3:9457973-9457992 | None:intergenic | 25.0% |
| ! | AATAGCTAACATGACTATTT+AGG | - | chr5_3:9457986-9458005 | None:intergenic | 25.0% |
| !!! | TATTGGCTCTTTAAAATTGT+TGG | + | chr5_3:9458230-9458249 | Msa0797350:intron | 25.0% |
| !!! | ATTGGCTCTTTAAAATTGTT+GGG | + | chr5_3:9458231-9458250 | Msa0797350:intron | 25.0% |
| ! | TTAATAAAAGTTCATACGGT+TGG | - | chr5_3:9458978-9458997 | None:intergenic | 25.0% |
| !! | AGAAAATCGATTTATACCAT+CGG | - | chr5_3:9459023-9459042 | None:intergenic | 25.0% |
| !!! | ATTTTCTAAAAGGACTTGTT+TGG | + | chr5_3:9459036-9459055 | Msa0797350:intron | 25.0% |
| !!! | TTTTCTAAAAGGACTTGTTT+GGG | + | chr5_3:9459037-9459056 | Msa0797350:intron | 25.0% |
| ! | TCTTAGTCATCTATTTAGAA+AGG | + | chr5_3:9459142-9459161 | Msa0797350:intron | 25.0% |
| ! | CTTAGTCATCTATTTAGAAA+GGG | + | chr5_3:9459143-9459162 | Msa0797350:intron | 25.0% |
| ! | AACATTTCCCATTTAGAAAA+TGG | + | chr5_3:9459326-9459345 | Msa0797350:intron | 25.0% |
| ! | ACATTTCCCATTTAGAAAAT+GGG | + | chr5_3:9459327-9459346 | Msa0797350:intron | 25.0% |
| ! | CAAATATCGAAATAGTACAT+TGG | - | chr5_3:9459470-9459489 | None:intergenic | 25.0% |
| ! | ACCTTGTACTAAAAATGATT+AGG | + | chr5_3:9459547-9459566 | Msa0797350:intron | 25.0% |
| !!! | ACCTAATCATTTTTAGTACA+AGG | - | chr5_3:9459551-9459570 | None:intergenic | 25.0% |
| ! | TTTAAAAACTGCTTGTGAAA+AGG | - | chr5_3:9460206-9460225 | None:intergenic | 25.0% |
| ! | ATGTGAAATTAATTAAGGAG+AGG | + | chr5_3:9460231-9460250 | Msa0797350:intron | 25.0% |
| !!! | GAGAGGTTTTATTTTGTATT+TGG | + | chr5_3:9460248-9460267 | Msa0797350:intron | 25.0% |
| !! | TTTTGTATTTGGAAACAAAG+AGG | + | chr5_3:9460259-9460278 | Msa0797350:intron | 25.0% |
| ! | TTTGTATTTGGAAACAAAGA+GGG | + | chr5_3:9460260-9460279 | Msa0797350:intron | 25.0% |
| !!! | ATGATTATTGATGACGTTTT+TGG | - | chr5_3:9460339-9460358 | None:intergenic | 25.0% |
| ! | ACTATTTCCCTTGAATTATT+TGG | + | chr5_3:9460692-9460711 | Msa0797350:intron | 25.0% |
| ! | CTATTTCCCTTGAATTATTT+GGG | + | chr5_3:9460693-9460712 | Msa0797350:intron | 25.0% |
| ! | TCATTTCCCAAATAATTCAA+GGG | - | chr5_3:9460702-9460721 | None:intergenic | 25.0% |
| ! | CTGCAAAAAAAAAAATCGTT+TGG | - | chr5_3:9460744-9460763 | None:intergenic | 25.0% |
| !!! | ACGATTTTTTTTTTTGCAGA+TGG | + | chr5_3:9460745-9460764 | Msa0797350:intron | 25.0% |
| !!! | CGATTTTTTTTTTTGCAGAT+GGG | + | chr5_3:9460746-9460765 | Msa0797350:intron | 25.0% |
| ! | TTACGTAGTTAATAAGTGTT+TGG | - | chr5_3:9460917-9460936 | None:intergenic | 25.0% |
| ! | ATGATAAAATCAATGGTTCA+TGG | - | chr5_3:9461011-9461030 | None:intergenic | 25.0% |
| ATTGGAAGAAATGGAAATAG+AGG | + | chr5_3:9455727-9455746 | Msa0797350:CDS | 30.0% | |
| TTGGAAGAAATGGAAATAGA+GGG | + | chr5_3:9455728-9455747 | Msa0797350:CDS | 30.0% | |
| !! | AAGATAACAAAGGTTGATGT+TGG | - | chr5_3:9455850-9455869 | None:intergenic | 30.0% |
| TAGCTTTCAGAAGATAACAA+AGG | - | chr5_3:9455860-9455879 | None:intergenic | 30.0% | |
| CAATTACCTCGAAATAGAAA+AGG | + | chr5_3:9456016-9456035 | Msa0797350:CDS | 30.0% | |
| ATCAGATAGATAGAACTTGT+CGG | - | chr5_3:9457295-9457314 | None:intergenic | 30.0% | |
| ! | TGGGTTAAAAGTTTTTCACA+TGG | + | chr5_3:9457389-9457408 | Msa0797350:intron | 30.0% |
| CAATCTAGACATCAATAAGA+TGG | - | chr5_3:9457491-9457510 | None:intergenic | 30.0% | |
| ! | ACGATGAATCAACACATTTT+TGG | + | chr5_3:9457531-9457550 | Msa0797350:intron | 30.0% |
| !! | GTACTACTCTATTTCTATCA+AGG | + | chr5_3:9457560-9457579 | Msa0797350:intron | 30.0% |
| GAGAAAAACTTACTTTCAAC+CGG | - | chr5_3:9457603-9457622 | None:intergenic | 30.0% | |
| ! | AAACTCAATTTTACATCTCC+AGG | + | chr5_3:9457927-9457946 | Msa0797350:intron | 30.0% |
| ! | AACTCAATTTTACATCTCCA+GGG | + | chr5_3:9457928-9457947 | Msa0797350:intron | 30.0% |
| ! | TAATTGGTATAAGGTTTGGT+TGG | + | chr5_3:9458020-9458039 | Msa0797350:intron | 30.0% |
| !! | TCCAATTACGGATCATTTTT+GGG | - | chr5_3:9458047-9458066 | None:intergenic | 30.0% |
| ! | ATCCAATTACGGATCATTTT+TGG | - | chr5_3:9458048-9458067 | None:intergenic | 30.0% |
| TTGGATAGAAAAAAAGACTC+TGG | + | chr5_3:9458062-9458081 | Msa0797350:intron | 30.0% | |
| ! | GTAGTCTTTTTCTCTTGTAT+TGG | + | chr5_3:9458213-9458232 | Msa0797350:intron | 30.0% |
| AGCTAGTGTTAATATTGAAG+GGG | - | chr5_3:9458262-9458281 | None:intergenic | 30.0% | |
| CAGCTAGTGTTAATATTGAA+GGG | - | chr5_3:9458263-9458282 | None:intergenic | 30.0% | |
| ACAGCTAGTGTTAATATTGA+AGG | - | chr5_3:9458264-9458283 | None:intergenic | 30.0% | |
| AAAAAATCTACAGATGGACA+AGG | + | chr5_3:9458428-9458447 | Msa0797350:intron | 30.0% | |
| TAATAGTCATGTTCAGTCTA+TGG | + | chr5_3:9458530-9458549 | Msa0797350:CDS | 30.0% | |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | + | chr5_3:9459055-9459074 | Msa0797350:intron | 30.0% |
| ! | TTTTGGTCAAATGCATCTAA+AGG | - | chr5_3:9459113-9459132 | None:intergenic | 30.0% |
| !!! | TCCATTTTTGGGTTGTTTAA+GGG | - | chr5_3:9459184-9459203 | None:intergenic | 30.0% |
| !!! | TTCCATTTTTGGGTTGTTTA+AGG | - | chr5_3:9459185-9459204 | None:intergenic | 30.0% |
| ! | ACACTACCCATTTTCTAAAT+GGG | - | chr5_3:9459336-9459355 | None:intergenic | 30.0% |
| ! | AACACTACCCATTTTCTAAA+TGG | - | chr5_3:9459337-9459356 | None:intergenic | 30.0% |
| ATGATTAGGTAACTAAGCAA+TGG | + | chr5_3:9459561-9459580 | Msa0797350:intron | 30.0% | |
| TGATTAGGTAACTAAGCAAT+GGG | + | chr5_3:9459562-9459581 | Msa0797350:intron | 30.0% | |
| ! | TTGAATCTAAGGTTCGAAAA+TGG | + | chr5_3:9459698-9459717 | Msa0797350:intron | 30.0% |
| TCAATTAAGCCTCGAAATTT+AGG | - | chr5_3:9459868-9459887 | None:intergenic | 30.0% | |
| AAACCTTAATTTAGACTGCT+TGG | + | chr5_3:9459887-9459906 | Msa0797350:intron | 30.0% | |
| AACCTTAATTTAGACTGCTT+GGG | + | chr5_3:9459888-9459907 | Msa0797350:intron | 30.0% | |
| AATCATCTGAGTGATTTGAA+TGG | + | chr5_3:9460353-9460372 | Msa0797350:intron | 30.0% | |
| TATTGAAAAGGACACAAGAA+GGG | - | chr5_3:9460571-9460590 | None:intergenic | 30.0% | |
| ATATTGAAAAGGACACAAGA+AGG | - | chr5_3:9460572-9460591 | None:intergenic | 30.0% | |
| TTGAAAATTTGGTTGTCGAA+AGG | - | chr5_3:9460644-9460663 | None:intergenic | 30.0% | |
| CTCATTTCCCAAATAATTCA+AGG | - | chr5_3:9460703-9460722 | None:intergenic | 30.0% | |
| CTTGAATTATTTGGGAAATG+AGG | + | chr5_3:9460701-9460720 | Msa0797350:intron | 30.0% | |
| !!! | TTTTTTTTTGCAGATGGGAA+CGG | + | chr5_3:9460751-9460770 | Msa0797350:intron | 30.0% |
| !! | CTTTTTCACAAGATCATTTC+TGG | - | chr5_3:9460789-9460808 | None:intergenic | 30.0% |
| ACGTTAGGACAATTATAACA+TGG | - | chr5_3:9460834-9460853 | None:intergenic | 30.0% | |
| TTATTGTTGCATCTACCATT+GGG | - | chr5_3:9460866-9460885 | None:intergenic | 30.0% | |
| ATTATTGTTGCATCTACCAT+TGG | - | chr5_3:9460867-9460886 | None:intergenic | 30.0% | |
| TCATATGATATGATCATGGA+TGG | + | chr5_3:9460886-9460905 | Msa0797350:three_prime_UTR | 30.0% | |
| TAATACTATTCGTGTCATCT+TGG | + | chr5_3:9460954-9460973 | Msa0797350:three_prime_UTR | 30.0% | |
| TCTTCAGAAGTCATTATGTA+GGG | - | chr5_3:9460980-9460999 | None:intergenic | 30.0% | |
| TTCTTCAGAAGTCATTATGT+AGG | - | chr5_3:9460981-9461000 | None:intergenic | 30.0% | |
| AGTGAGCATGATAAAATCAA+TGG | - | chr5_3:9461018-9461037 | None:intergenic | 30.0% | |
| TTCGTATCCTCTTTATAGCA+CGG | - | chr5_3:9455431-9455450 | None:intergenic | 35.0% | |
| !! | TTGTGTTTTGTTCCAGCTAT+TGG | + | chr5_3:9455709-9455728 | Msa0797350:intron | 35.0% |
| TTTCCATTTCTTCCAATAGC+TGG | - | chr5_3:9455724-9455743 | None:intergenic | 35.0% | |
| CAACGTGAACAAAACTTGTA+TGG | + | chr5_3:9455767-9455786 | Msa0797350:CDS | 35.0% | |
| GGTAATTGTGTTTGTGAGAA+TGG | - | chr5_3:9456004-9456023 | None:intergenic | 35.0% | |
| ! | AATGACCCTTTTCTATTTCG+AGG | - | chr5_3:9456025-9456044 | None:intergenic | 35.0% |
| GTTGAAACTACAAAGTCACA+AGG | + | chr5_3:9456061-9456080 | Msa0797350:CDS | 35.0% | |
| TCTTTCTCTCTGCTATGATA+TGG | - | chr5_3:9456123-9456142 | None:intergenic | 35.0% | |
| AGGACACTAGTTACTAGTTA+AGG | - | chr5_3:9456787-9456806 | None:intergenic | 35.0% | |
| TTAACTAGTAACTAGTGTCC+TGG | + | chr5_3:9456786-9456805 | Msa0797350:intron | 35.0% | |
| TAACTAGTAACTAGTGTCCT+GGG | + | chr5_3:9456787-9456806 | Msa0797350:intron | 35.0% | |
| TCGTAAATACTCATTCCTCA+AGG | + | chr5_3:9457092-9457111 | Msa0797350:intron | 35.0% | |
| TAGAACATCAAATGTTGCGT+GGG | + | chr5_3:9457370-9457389 | Msa0797350:intron | 35.0% | |
| GGATTATGTCGAATTTCAAC+CGG | + | chr5_3:9457581-9457600 | Msa0797350:intron | 35.0% | |
| TCCCAAAAATGATCCGTAAT+TGG | + | chr5_3:9458043-9458062 | Msa0797350:intron | 35.0% | |
| AAACTTTGCAGACAAGTATG+AGG | - | chr5_3:9458169-9458188 | None:intergenic | 35.0% | |
| ATACTTGTCTGCAAAGTTTC+TGG | + | chr5_3:9458170-9458189 | Msa0797350:intron | 35.0% | |
| TACTTGTCTGCAAAGTTTCT+GGG | + | chr5_3:9458171-9458190 | Msa0797350:intron | 35.0% | |
| ! | AAACTTTGGCTTCTACATGT+GGG | - | chr5_3:9458638-9458657 | None:intergenic | 35.0% |
| ! | AAAACTTTGGCTTCTACATG+TGG | - | chr5_3:9458639-9458658 | None:intergenic | 35.0% |
| ! | ACATGTAGAAGCCAAAGTTT+TGG | + | chr5_3:9458638-9458657 | Msa0797350:CDS | 35.0% |
| ! | GGGACTTTTGCTCAAAATAT+TGG | + | chr5_3:9458701-9458720 | Msa0797350:CDS | 35.0% |
| ! | AATAACAGTGTCCTACCTTT+TGG | + | chr5_3:9458756-9458775 | Msa0797350:CDS | 35.0% |
| ! | ATAACAGTGTCCTACCTTTT+GGG | + | chr5_3:9458757-9458776 | Msa0797350:CDS | 35.0% |
| TTTATTTACCTGAGCAACGA+TGG | - | chr5_3:9458802-9458821 | None:intergenic | 35.0% | |
| TCGGGATTATTCTAATAGTG+CGG | - | chr5_3:9458939-9458958 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | + | chr5_3:9459065-9459084 | Msa0797350:intron | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | + | chr5_3:9459066-9459085 | Msa0797350:intron | 35.0% | |
| GGGAAGAACGAAAAACTTAA+AGG | + | chr5_3:9459086-9459105 | Msa0797350:intron | 35.0% | |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr5_3:9459294-9459313 | Msa0797350:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr5_3:9459295-9459314 | Msa0797350:intron | 35.0% |
| !! | TTTCTTAACTTGTGCCCTTA+GGG | - | chr5_3:9459368-9459387 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr5_3:9459508-9459527 | None:intergenic | 35.0% |
| GATTAGGTAACTAAGCAATG+GGG | + | chr5_3:9459563-9459582 | Msa0797350:intron | 35.0% | |
| ACCTTAATTTAGACTGCTTG+GGG | + | chr5_3:9459889-9459908 | Msa0797350:intron | 35.0% | |
| ATTGAAAAGGACACAAGAAG+GGG | - | chr5_3:9460570-9460589 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCAGATGGGAAC+GGG | + | chr5_3:9460752-9460771 | Msa0797350:intron | 35.0% |
| TAATTGTCCTAACGTGAATG+TGG | + | chr5_3:9460839-9460858 | Msa0797350:exon | 35.0% | |
| TATTGTTGCATCTACCATTG+GGG | - | chr5_3:9460865-9460884 | None:intergenic | 35.0% | |
| ! | ATTTTATCATGCTCACTCTG+TGG | + | chr5_3:9461021-9461040 | Msa0797350:three_prime_UTR | 35.0% |
| !! | ATAGCACGGTTTCTAGTTTC+TGG | - | chr5_3:9455417-9455436 | None:intergenic | 40.0% |
| CTAGAAACCGTGCTATAAAG+AGG | + | chr5_3:9455421-9455440 | Msa0797350:five_prime_UTR | 40.0% | |
| CAAACTCATCATCAACTAGC+TGG | + | chr5_3:9455565-9455584 | Msa0797350:CDS | 40.0% | |
| GTTCCAGCTATTGGAAGAAA+TGG | + | chr5_3:9455718-9455737 | Msa0797350:intron | 40.0% | |
| ACTACAAAGTCACAAGGACA+AGG | + | chr5_3:9456067-9456086 | Msa0797350:CDS | 40.0% | |
| CTACAAAGTCACAAGGACAA+GGG | + | chr5_3:9456068-9456087 | Msa0797350:CDS | 40.0% | |
| ! | TCTTATTCCTGGCTTGAAGA+AGG | + | chr5_3:9456183-9456202 | Msa0797350:CDS | 40.0% |
| AACTAGTAACTAGTGTCCTG+GGG | + | chr5_3:9456788-9456807 | Msa0797350:intron | 40.0% | |
| ! | ATTGAAGTTTGCTTGCCTTG+AGG | - | chr5_3:9457110-9457129 | None:intergenic | 40.0% |
| CTAGAACATCAAATGTTGCG+TGG | + | chr5_3:9457369-9457388 | Msa0797350:intron | 40.0% | |
| CCATCTTCTATGTCTGACAA+AGG | - | chr5_3:9458100-9458119 | None:intergenic | 40.0% | |
| CCTTTGTCAGACATAGAAGA+TGG | + | chr5_3:9458097-9458116 | Msa0797350:intron | 40.0% | |
| TAGAAGATGGAAGCTGTTGA+TGG | + | chr5_3:9458110-9458129 | Msa0797350:intron | 40.0% | |
| CTAATACCCTCAAACGTTCT+TGG | - | chr5_3:9458494-9458513 | None:intergenic | 40.0% | |
| TCATGTTCAGTCTATGGTGA+CGG | + | chr5_3:9458536-9458555 | Msa0797350:CDS | 40.0% | |
| GATGAGTCAGAACTTAGTTG+TGG | - | chr5_3:9458570-9458589 | None:intergenic | 40.0% | |
| !!! | AGAAGCCAAAGTTTTGGACA+AGG | + | chr5_3:9458644-9458663 | Msa0797350:CDS | 40.0% |
| CACATCCTTGTCCAAAACTT+TGG | - | chr5_3:9458652-9458671 | None:intergenic | 40.0% | |
| ATCCACTGCCAAAAGCAAAA+GGG | + | chr5_3:9458681-9458700 | Msa0797350:CDS | 40.0% | |
| ! | GCAAAAGTCCCTTTTGCTTT+TGG | - | chr5_3:9458692-9458711 | None:intergenic | 40.0% |
| ! | TAACAGTGTCCTACCTTTTG+GGG | + | chr5_3:9458758-9458777 | Msa0797350:CDS | 40.0% |
| TCAAGGATAGAATCCCCAAA+AGG | - | chr5_3:9458774-9458793 | None:intergenic | 40.0% | |
| GAGCAACGATGGTTATATCA+AGG | - | chr5_3:9458791-9458810 | None:intergenic | 40.0% | |
| TGATATAACCATCGTTGCTC+AGG | + | chr5_3:9458791-9458810 | Msa0797350:CDS | 40.0% | |
| ! | GTTTTTCGTTCTTCCCAAAG+TGG | - | chr5_3:9459082-9459101 | None:intergenic | 40.0% |
| GCCCTTAAACAACCCAAAAA+TGG | + | chr5_3:9459180-9459199 | Msa0797350:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr5_3:9459312-9459331 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTA+AGG | + | chr5_3:9459350-9459369 | Msa0797350:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTAA+GGG | + | chr5_3:9459351-9459370 | Msa0797350:intron | 40.0% |
| !! | GTTTCTTAACTTGTGCCCTT+AGG | - | chr5_3:9459369-9459388 | None:intergenic | 40.0% |
| ! | TGCTTGGGGCATTTATTCAA+TGG | + | chr5_3:9459903-9459922 | Msa0797350:intron | 40.0% |
| TGAAACAGGGGAGTAAATAG+AGG | + | chr5_3:9460087-9460106 | Msa0797350:intron | 40.0% | |
| TGCTTGTGAAAAGGAGAACA+AGG | - | chr5_3:9460197-9460216 | None:intergenic | 40.0% | |
| TTGAAAAGGACACAAGAAGG+GGG | - | chr5_3:9460569-9460588 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGCAGATGGGAACG+GGG | + | chr5_3:9460753-9460772 | Msa0797350:intron | 40.0% |
| TCTTGTGAAAAAGCTACGTG+TGG | + | chr5_3:9460796-9460815 | Msa0797350:CDS | 40.0% | |
| ! | AACTAGCTGGTTCTCTGATC+TGG | + | chr5_3:9455578-9455597 | Msa0797350:CDS | 45.0% |
| ATTATGAGCCACAGACCTCT+TGG | - | chr5_3:9456095-9456114 | None:intergenic | 45.0% | |
| CCATATACCTTCTTCAAGCC+AGG | - | chr5_3:9456193-9456212 | None:intergenic | 45.0% | |
| ! | CCTGGCTTGAAGAAGGTATA+TGG | + | chr5_3:9456190-9456209 | Msa0797350:intron | 45.0% |
| ACTAGTAACTAGTGTCCTGG+GGG | + | chr5_3:9456789-9456808 | Msa0797350:intron | 45.0% | |
| TGAGCAACTAGAATTGACCC+TGG | - | chr5_3:9457948-9457967 | None:intergenic | 45.0% | |
| !! | GATGGAAGCTGTTGATGGTT+TGG | + | chr5_3:9458115-9458134 | Msa0797350:intron | 45.0% |
| CGTACTTGATTGCATCTCCT+AGG | - | chr5_3:9458461-9458480 | None:intergenic | 45.0% | |
| AAGAGCTCCAAGAACGTTTG+AGG | + | chr5_3:9458484-9458503 | Msa0797350:CDS | 45.0% | |
| AGAGCTCCAAGAACGTTTGA+GGG | + | chr5_3:9458485-9458504 | Msa0797350:CDS | 45.0% | |
| !! | GATGATTCTGAAGCTGCTAG+TGG | + | chr5_3:9458597-9458616 | Msa0797350:CDS | 45.0% |
| TGGACAAGGATGTGCTCATA+AGG | + | chr5_3:9458658-9458677 | Msa0797350:CDS | 45.0% | |
| GATCCACTGCCAAAAGCAAA+AGG | + | chr5_3:9458680-9458699 | Msa0797350:CDS | 45.0% | |
| GGATAGAATCCCCAAAAGGT+AGG | - | chr5_3:9458770-9458789 | None:intergenic | 45.0% | |
| AATCCCGAGCATCTTAAGCT+AGG | + | chr5_3:9458951-9458970 | Msa0797350:intron | 45.0% | |
| TGGTCCTAGCTTAAGATGCT+CGG | - | chr5_3:9458958-9458977 | None:intergenic | 45.0% | |
| ! | ATGCGGTTTTCTTCATCCGA+TGG | + | chr5_3:9459004-9459023 | Msa0797350:intron | 45.0% |
| TAGGTAACTAAGCAATGGGG+AGG | + | chr5_3:9459566-9459585 | Msa0797350:intron | 45.0% | |
| CGAAACATGTTCAGTCAGCA+CGG | - | chr5_3:9459599-9459618 | None:intergenic | 45.0% | |
| GCCCCAAGCAGTCTAAATTA+AGG | - | chr5_3:9459893-9459912 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTAAATAGTTTAA+GGG | - | chr5_3:9457016-9457035 | None:intergenic | 5.0% |
| !!! | ATTATTTTTTAAATAGTTTA+AGG | - | chr5_3:9457017-9457036 | None:intergenic | 5.0% |
| !! | AATTAAATTATATTTATTTG+AGG | + | chr5_3:9459831-9459850 | Msa0797350:intron | 5.0% |
| GAGGTCTGTGGCTCATAATC+AGG | + | chr5_3:9456096-9456115 | Msa0797350:CDS | 50.0% | |
| GCTCTAGCTGCTCTTATTCC+TGG | + | chr5_3:9456172-9456191 | Msa0797350:CDS | 50.0% | |
| TCTTGTTAACTAGTGCCCCC+AGG | - | chr5_3:9456807-9456826 | None:intergenic | 50.0% | |
| ATGGACAAGGCTTCAGTCCT+AGG | + | chr5_3:9458441-9458460 | Msa0797350:CDS | 50.0% | |
| !! | GTCCCTTTTGCTTTTGGCAG+TGG | - | chr5_3:9458686-9458705 | None:intergenic | 50.0% |
| GGTCCTAGCTTAAGATGCTC+GGG | - | chr5_3:9458957-9458976 | None:intergenic | 50.0% | |
| ATTGGGGCCACATTCACGTT+AGG | - | chr5_3:9460849-9460868 | None:intergenic | 50.0% | |
| TAACGTGAATGTGGCCCCAA+TGG | + | chr5_3:9460848-9460867 | Msa0797350:three_prime_UTR | 50.0% | |
| CACAAGGACAAGGGACCAAG+AGG | + | chr5_3:9456077-9456096 | Msa0797350:CDS | 55.0% | |
| ACAAGGGACCAAGAGGTCTG+TGG | + | chr5_3:9456084-9456103 | Msa0797350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9455399 | 9461254 | 9455399 | ID=Msa0797350;Name=Msa0797350 |
| chr5_3 | mRNA | 9455399 | 9461254 | 9455399 | ID=Msa0797350-mRNA-1;Parent=Msa0797350;Name=Msa0797350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|1|1|1|1|1|4|413|328 |
| chr5_3 | exon | 9455399 | 9455599 | 9455399 | ID=Msa0797350-mRNA-1:exon:4096;Parent=Msa0797350-mRNA-1 |
| chr5_3 | exon | 9455725 | 9456204 | 9455725 | ID=Msa0797350-mRNA-1:exon:4097;Parent=Msa0797350-mRNA-1 |
| chr5_3 | exon | 9458441 | 9458812 | 9458441 | ID=Msa0797350-mRNA-1:exon:4098;Parent=Msa0797350-mRNA-1 |
| chr5_3 | exon | 9460764 | 9461254 | 9460764 | ID=Msa0797350-mRNA-1:exon:4099;Parent=Msa0797350-mRNA-1 |
| chr5_3 | five_prime_UTR | 9455399 | 9455542 | 9455399 | ID=Msa0797350-mRNA-1:five_prime_utr;Parent=Msa0797350-mRNA-1 |
| chr5_3 | CDS | 9455543 | 9455599 | 9455543 | ID=Msa0797350-mRNA-1:cds;Parent=Msa0797350-mRNA-1 |
| chr5_3 | CDS | 9455725 | 9456204 | 9455725 | ID=Msa0797350-mRNA-1:cds;Parent=Msa0797350-mRNA-1 |
| chr5_3 | CDS | 9458441 | 9458812 | 9458441 | ID=Msa0797350-mRNA-1:cds;Parent=Msa0797350-mRNA-1 |
| chr5_3 | CDS | 9460764 | 9460841 | 9460764 | ID=Msa0797350-mRNA-1:cds;Parent=Msa0797350-mRNA-1 |
| chr5_3 | three_prime_UTR | 9460842 | 9461254 | 9460842 | ID=Msa0797350-mRNA-1:three_prime_utr;Parent=Msa0797350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
