Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754680 | XP_003611493.1 | 92.793 | 333 | 17 | 2 | 1 | 327 | 1 | 332 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754680 | sp|Q9T072|BH025_ARATH | 44.444 | 261 | 110 | 9 | 84 | 322 | 76 | 323 | 2.45e-52 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754680 | G7K125 | 92.793 | 333 | 17 | 2 | 1 | 327 | 1 | 332 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0754680 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102750 | Msa0754680 | 0.820966 | 5.187088e-53 | -8.615850e-47 |
| Msa0634640 | Msa0754680 | 0.816885 | 4.390279e-52 | -8.615850e-47 |
| Msa0664850 | Msa0754680 | 0.815162 | 1.064972e-51 | -8.615850e-47 |
| Msa0703490 | Msa0754680 | 0.808419 | 3.126878e-50 | -8.615850e-47 |
| Msa0713620 | Msa0754680 | 0.868870 | 4.733290e-66 | -8.615850e-47 |
| Msa0730270 | Msa0754680 | 0.847854 | 8.885995e-60 | -8.615850e-47 |
| Msa0754680 | Msa0770580 | 0.823453 | 1.373820e-53 | -8.615850e-47 |
| Msa0754680 | Msa0797350 | 0.976694 | 2.556916e-142 | -8.615850e-47 |
| Msa0754680 | Msa0834860 | 0.941144 | 6.921084e-101 | -8.615850e-47 |
| Msa0754680 | Msa0849330 | 0.817776 | 2.767573e-52 | -8.615850e-47 |
| Msa0754680 | Msa0868020 | 0.825946 | 3.552518e-54 | -8.615850e-47 |
| Msa0754680 | Msa0975420 | 0.806724 | 7.156813e-50 | -8.615850e-47 |
| Msa0754680 | Msa1009020 | 0.823148 | 1.618458e-53 | -8.615850e-47 |
| Msa0754680 | Msa1040120 | 0.808244 | 3.405924e-50 | -8.615850e-47 |
| Msa0754680 | Msa1143620 | 0.803222 | 3.864773e-49 | -8.615850e-47 |
| Msa0754680 | Msa1155560 | 0.804465 | 2.132793e-49 | -8.615850e-47 |
| Msa0754680 | Msa1227600 | 0.812195 | 4.790449e-51 | -8.615850e-47 |
| Msa0754680 | Msa1249920 | 0.800023 | 1.750405e-48 | -8.615850e-47 |
| Msa0754680 | Msa1291350 | 0.805663 | 1.197243e-49 | -8.615850e-47 |
| Msa0754680 | Msa1291580 | -0.809677 | 1.681254e-50 | -8.615850e-47 |
| Msa0754680 | Msa1322580 | 0.812847 | 3.450274e-51 | -8.615850e-47 |
| Msa0754680 | Msa1341570 | 0.837524 | 4.940010e-57 | -8.615850e-47 |
| Msa0754680 | Msa1358770 | 0.806729 | 7.141156e-50 | -8.615850e-47 |
| Msa0754680 | Msa1465900 | 0.803782 | 2.957729e-49 | -8.615850e-47 |
| Msa0142470 | Msa0754680 | 0.805128 | 1.550393e-49 | -8.615850e-47 |
| Msa0190830 | Msa0754680 | 0.800687 | 1.282455e-48 | -8.615850e-47 |
| Msa0193650 | Msa0754680 | 0.802111 | 6.550408e-49 | -8.615850e-47 |
| Msa0216310 | Msa0754680 | 0.830146 | 3.461705e-55 | -8.615850e-47 |
| Msa0233190 | Msa0754680 | 0.804734 | 1.873922e-49 | -8.615850e-47 |
| Msa0448550 | Msa0754680 | -0.800733 | 1.255009e-48 | -8.615850e-47 |
| Msa0255700 | Msa0754680 | 0.804885 | 1.742845e-49 | -8.615850e-47 |
| Msa0256510 | Msa0754680 | 0.842685 | 2.222959e-58 | -8.615850e-47 |
| Msa0260820 | Msa0754680 | -0.810310 | 1.228163e-50 | -8.615850e-47 |
| Msa0266000 | Msa0754680 | -0.818899 | 1.540168e-52 | -8.615850e-47 |
| Msa0279640 | Msa0754680 | 0.826700 | 2.349542e-54 | -8.615850e-47 |
| Msa0311580 | Msa0754680 | 0.806105 | 9.666468e-50 | -8.615850e-47 |
| Msa0334350 | Msa0754680 | 0.848915 | 4.521077e-60 | -8.615850e-47 |
| Msa0350620 | Msa0754680 | 0.812651 | 3.809282e-51 | -8.615850e-47 |
| Msa0356890 | Msa0754680 | -0.824223 | 9.068377e-54 | -8.615850e-47 |
| Msa0567020 | Msa0754680 | 0.806678 | 7.320074e-50 | -8.615850e-47 |
| Msa0569020 | Msa0754680 | 0.801252 | 9.827458e-49 | -8.615850e-47 |
| Msa0586910 | Msa0754680 | 0.822152 | 2.759711e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754680 | MtrunA17_Chr5g0400621 | 92.793 | 333 | 17 | 2 | 1 | 327 | 1 | 332 | 0.0 | 526 |
| Msa0754680 | MtrunA17_Chr5g0400641 | 74.522 | 157 | 39 | 1 | 154 | 310 | 1 | 156 | 9.65e-77 | 232 |
| Msa0754680 | MtrunA17_Chr2g0307131 | 43.799 | 379 | 136 | 15 | 1 | 327 | 1 | 354 | 6.21e-72 | 226 |
| Msa0754680 | MtrunA17_Chr4g0054581 | 41.562 | 397 | 142 | 14 | 1 | 327 | 1 | 377 | 2.04e-70 | 223 |
| Msa0754680 | MtrunA17_Chr4g0033291 | 47.319 | 317 | 123 | 12 | 36 | 325 | 26 | 325 | 7.07e-69 | 218 |
| Msa0754680 | MtrunA17_Chr6g0468491 | 46.483 | 327 | 123 | 14 | 36 | 327 | 3 | 312 | 7.09e-69 | 217 |
| Msa0754680 | MtrunA17_Chr4g0033281 | 44.282 | 341 | 159 | 12 | 1 | 327 | 1 | 324 | 8.35e-68 | 215 |
| Msa0754680 | MtrunA17_Chr4g0054621 | 44.013 | 309 | 137 | 8 | 43 | 327 | 44 | 340 | 6.03e-67 | 213 |
| Msa0754680 | MtrunA17_Chr4g0033391 | 45.659 | 311 | 129 | 10 | 36 | 325 | 26 | 317 | 8.93e-67 | 213 |
| Msa0754680 | MtrunA17_Chr2g0307141 | 41.534 | 378 | 150 | 13 | 1 | 327 | 1 | 358 | 7.50e-64 | 206 |
| Msa0754680 | MtrunA17_Chr2g0280161 | 52.432 | 185 | 86 | 1 | 138 | 322 | 166 | 348 | 7.31e-58 | 190 |
| Msa0754680 | MtrunA17_Chr6g0468461 | 42.857 | 343 | 129 | 15 | 1 | 306 | 1 | 313 | 1.33e-57 | 189 |
| Msa0754680 | MtrunA17_Chr5g0400661 | 40.449 | 356 | 152 | 13 | 6 | 324 | 2 | 334 | 2.75e-57 | 188 |
| Msa0754680 | MtrunA17_Chr4g0049331 | 51.323 | 189 | 87 | 2 | 134 | 320 | 118 | 303 | 2.53e-56 | 185 |
| Msa0754680 | MtrunA17_Chr7g0225901 | 52.764 | 199 | 78 | 7 | 112 | 306 | 56 | 242 | 8.83e-55 | 179 |
| Msa0754680 | MtrunA17_Chr4g0054571 | 46.350 | 274 | 114 | 9 | 77 | 322 | 59 | 327 | 2.53e-54 | 180 |
| Msa0754680 | MtrunA17_Chr4g0002801 | 43.028 | 251 | 122 | 6 | 86 | 325 | 91 | 331 | 4.04e-53 | 177 |
| Msa0754680 | MtrunA17_Chr2g0333621 | 44.351 | 239 | 114 | 6 | 96 | 324 | 82 | 311 | 7.01e-53 | 176 |
| Msa0754680 | MtrunA17_Chr2g0333641 | 40.893 | 291 | 138 | 10 | 42 | 319 | 33 | 302 | 1.07e-50 | 171 |
| Msa0754680 | MtrunA17_Chr4g0054561 | 40.433 | 277 | 150 | 7 | 51 | 319 | 51 | 320 | 2.76e-49 | 167 |
| Msa0754680 | MtrunA17_Chr4g0002781 | 42.913 | 254 | 124 | 6 | 85 | 325 | 105 | 350 | 3.23e-49 | 167 |
| Msa0754680 | MtrunA17_Chr8g0336681 | 41.631 | 233 | 125 | 3 | 96 | 320 | 102 | 331 | 8.06e-49 | 166 |
| Msa0754680 | MtrunA17_Chr5g0400671 | 36.749 | 283 | 147 | 6 | 69 | 324 | 46 | 323 | 1.90e-46 | 160 |
| Msa0754680 | MtrunA17_Chr4g0054551 | 38.267 | 277 | 156 | 7 | 51 | 319 | 51 | 320 | 1.35e-45 | 157 |
| Msa0754680 | MtrunA17_Chr2g0333611 | 44.199 | 181 | 90 | 4 | 144 | 320 | 38 | 211 | 1.22e-42 | 147 |
| Msa0754680 | MtrunA17_Chr7g0249811 | 44.324 | 185 | 93 | 1 | 136 | 320 | 150 | 324 | 2.17e-41 | 147 |
| Msa0754680 | MtrunA17_Chr2g0333541 | 42.784 | 194 | 106 | 4 | 134 | 323 | 75 | 267 | 9.33e-41 | 144 |
| Msa0754680 | MtrunA17_Chr7g0233441 | 48.993 | 149 | 65 | 1 | 174 | 322 | 57 | 194 | 9.93e-39 | 136 |
| Msa0754680 | MtrunA17_Chr4g0002831 | 44.706 | 170 | 81 | 4 | 154 | 322 | 45 | 202 | 3.55e-36 | 129 |
| Msa0754680 | MtrunA17_Chr4g0002851 | 49.664 | 149 | 56 | 2 | 174 | 322 | 65 | 194 | 5.27e-36 | 129 |
| Msa0754680 | MtrunA17_Chr1g0185621 | 29.121 | 182 | 121 | 2 | 111 | 285 | 436 | 616 | 2.19e-19 | 89.0 |
| Msa0754680 | MtrunA17_Chr7g0275821 | 29.412 | 170 | 108 | 3 | 151 | 319 | 252 | 410 | 3.57e-16 | 79.0 |
| Msa0754680 | MtrunA17_Chr8g0366751 | 36.913 | 149 | 82 | 4 | 151 | 288 | 462 | 609 | 4.93e-15 | 75.9 |
| Msa0754680 | MtrunA17_Chr5g0411341 | 30.337 | 178 | 93 | 5 | 151 | 308 | 493 | 659 | 1.12e-14 | 74.7 |
| Msa0754680 | MtrunA17_Chr1g0211081 | 31.925 | 213 | 123 | 10 | 38 | 231 | 191 | 400 | 5.15e-14 | 72.8 |
| Msa0754680 | MtrunA17_Chr8g0365711 | 26.842 | 190 | 111 | 5 | 124 | 301 | 225 | 398 | 1.80e-13 | 70.9 |
| Msa0754680 | MtrunA17_Chr8g0346151 | 26.061 | 165 | 113 | 3 | 101 | 260 | 231 | 391 | 7.54e-13 | 68.9 |
| Msa0754680 | MtrunA17_Chr7g0260841 | 50.000 | 56 | 28 | 0 | 151 | 206 | 355 | 410 | 4.88e-12 | 66.6 |
| Msa0754680 | MtrunA17_Chr8g0346161 | 32.759 | 116 | 72 | 3 | 151 | 263 | 291 | 403 | 8.21e-12 | 65.9 |
| Msa0754680 | MtrunA17_Chr0c01g0489461 | 26.347 | 167 | 101 | 4 | 152 | 296 | 197 | 363 | 1.17e-11 | 65.1 |
| Msa0754680 | MtrunA17_Chr3g0131691 | 28.571 | 175 | 112 | 5 | 134 | 298 | 283 | 454 | 4.07e-11 | 63.9 |
| Msa0754680 | MtrunA17_Chr2g0298751 | 26.543 | 162 | 107 | 3 | 152 | 301 | 53 | 214 | 6.34e-11 | 61.6 |
| Msa0754680 | MtrunA17_Chr7g0270871 | 44.156 | 77 | 42 | 1 | 128 | 203 | 188 | 264 | 9.66e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754680 | AT4G37850.2 | 44.444 | 261 | 110 | 9 | 84 | 322 | 76 | 323 | 2.49e-53 | 178 |
| Msa0754680 | AT4G37850.1 | 44.444 | 261 | 110 | 9 | 84 | 322 | 76 | 323 | 2.49e-53 | 178 |
| Msa0754680 | AT2G22760.1 | 35.404 | 322 | 164 | 10 | 15 | 324 | 6 | 295 | 2.87e-46 | 159 |
| Msa0754680 | AT2G22750.5 | 44.033 | 243 | 117 | 7 | 89 | 319 | 86 | 321 | 1.36e-44 | 155 |
| Msa0754680 | AT2G22750.2 | 44.033 | 243 | 117 | 7 | 89 | 319 | 62 | 297 | 1.39e-44 | 155 |
| Msa0754680 | AT2G22750.3 | 36.441 | 354 | 158 | 11 | 4 | 319 | 1 | 325 | 2.04e-44 | 155 |
| Msa0754680 | AT2G22750.1 | 44.033 | 243 | 116 | 8 | 89 | 319 | 62 | 296 | 4.15e-43 | 150 |
| Msa0754680 | AT2G22750.4 | 36.441 | 354 | 157 | 12 | 4 | 319 | 1 | 324 | 5.37e-43 | 151 |
| Msa0754680 | AT2G22770.1 | 36.508 | 315 | 154 | 9 | 43 | 322 | 14 | 317 | 2.44e-42 | 149 |
| Msa0754680 | AT2G22760.2 | 35.548 | 301 | 151 | 9 | 15 | 304 | 6 | 274 | 4.63e-42 | 147 |
| Msa0754680 | AT4G09820.1 | 34.109 | 129 | 61 | 2 | 152 | 280 | 364 | 468 | 9.13e-16 | 78.2 |
| Msa0754680 | AT2G46510.1 | 32.331 | 133 | 69 | 3 | 130 | 260 | 372 | 485 | 2.07e-15 | 77.4 |
| Msa0754680 | AT4G17880.1 | 31.250 | 160 | 104 | 3 | 151 | 308 | 416 | 571 | 4.85e-15 | 76.3 |
| Msa0754680 | AT3G61950.6 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 1.10e-14 | 73.9 |
| Msa0754680 | AT2G16910.1 | 32.258 | 155 | 84 | 4 | 152 | 285 | 315 | 469 | 1.26e-14 | 75.1 |
| Msa0754680 | AT5G46760.1 | 30.769 | 169 | 97 | 4 | 151 | 308 | 415 | 574 | 1.33e-14 | 75.1 |
| Msa0754680 | AT1G01260.1 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 1.97e-14 | 74.3 |
| Msa0754680 | AT1G01260.2 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 1.97e-14 | 74.3 |
| Msa0754680 | AT1G01260.3 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 1.97e-14 | 74.3 |
| Msa0754680 | AT1G32640.1 | 32.331 | 133 | 90 | 0 | 151 | 283 | 452 | 584 | 2.02e-14 | 74.3 |
| Msa0754680 | AT3G61950.3 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 2.12e-14 | 73.6 |
| Msa0754680 | AT3G61950.2 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 2.48e-14 | 72.8 |
| Msa0754680 | AT3G61950.1 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 3.57e-14 | 72.8 |
| Msa0754680 | AT2G28160.1 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.45e-12 | 67.8 |
| Msa0754680 | AT2G28160.2 | 28.409 | 176 | 103 | 5 | 134 | 296 | 114 | 279 | 1.61e-12 | 67.8 |
| Msa0754680 | AT1G63650.3 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.47e-12 | 68.2 |
| Msa0754680 | AT1G63650.1 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.47e-12 | 68.2 |
| Msa0754680 | AT1G63650.2 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 2.47e-12 | 68.2 |
| Msa0754680 | AT4G16430.1 | 50.000 | 58 | 29 | 0 | 151 | 208 | 320 | 377 | 2.94e-12 | 67.8 |
| Msa0754680 | AT4G30980.1 | 28.729 | 181 | 110 | 3 | 100 | 270 | 82 | 253 | 3.86e-12 | 66.6 |
| Msa0754680 | AT3G24140.1 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 3.91e-12 | 67.0 |
| Msa0754680 | AT3G24140.2 | 26.627 | 169 | 100 | 3 | 152 | 296 | 199 | 367 | 4.03e-12 | 67.0 |
| Msa0754680 | AT1G12860.2 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 5.89e-12 | 66.6 |
| Msa0754680 | AT4G30980.2 | 29.121 | 182 | 108 | 4 | 100 | 270 | 130 | 301 | 6.89e-12 | 66.2 |
| Msa0754680 | AT1G12860.1 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 8.18e-12 | 66.2 |
| Msa0754680 | AT5G41315.2 | 29.310 | 174 | 96 | 7 | 151 | 300 | 449 | 619 | 1.01e-11 | 66.2 |
| Msa0754680 | AT5G41315.3 | 29.310 | 174 | 96 | 7 | 151 | 300 | 446 | 616 | 1.10e-11 | 66.2 |
| Msa0754680 | AT5G41315.1 | 29.310 | 174 | 96 | 7 | 151 | 300 | 441 | 611 | 1.26e-11 | 65.9 |
| Msa0754680 | AT5G57150.2 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 7.20e-11 | 61.6 |
| Msa0754680 | AT5G57150.3 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 9.27e-11 | 61.2 |
| Msa0754680 | AT5G57150.5 | 26.220 | 164 | 101 | 4 | 152 | 301 | 55 | 212 | 9.37e-11 | 61.2 |
| Msa0754680 | AT5G57150.1 | 26.220 | 164 | 101 | 4 | 152 | 301 | 55 | 212 | 9.93e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCACGGTTTCTAGTTTC+TGG | 0.209923 | 5_2:+8379026 | None:intergenic |
| TTATCCTTTAGAAAAGAATT+TGG | 0.226485 | 5_2:-8378550 | Msa0754680:CDS |
| CTAATACCCTCAAACGTTCT+TGG | 0.234491 | 5_2:+8375951 | None:intergenic |
| AGTCTTGTTCTATGATAAAT+TGG | 0.239847 | 5_2:-8378985 | Msa0754680:five_prime_UTR |
| AATCACATCAATAGTCATTA+TGG | 0.256413 | 5_2:-8378916 | Msa0754680:exon |
| AATAACAGTGTCCTACCTTT+TGG | 0.259096 | 5_2:-8375686 | Msa0754680:CDS |
| TGAGAATATATACATATAAT+TGG | 0.261698 | 5_2:-8373318 | Msa0754680:three_prime_UTR |
| GCTCTAGCTGCTCTTATTCC+TGG | 0.270587 | 5_2:-8378267 | Msa0754680:CDS |
| TCTTTCTCTCTGCTATGATA+TGG | 0.318056 | 5_2:+8378319 | None:intergenic |
| TCAAATAATAGATTAAGATT+TGG | 0.321285 | 5_2:-8373262 | Msa0754680:three_prime_UTR |
| GTTCCAGCTATTGGAAGAAA+TGG | 0.343234 | 5_2:-8378721 | Msa0754680:intron |
| TGTTTCACAATTTAAGAGAT+TGG | 0.357280 | 5_2:+8378958 | None:intergenic |
| CAACGTGAACAAAACTTGTT+TGG | 0.357562 | 5_2:-8378672 | Msa0754680:CDS |
| CACATCCTTGTCCAAAACTT+TGG | 0.362806 | 5_2:+8375793 | None:intergenic |
| GGTAATTGTGTTTGTGAGAA+TGG | 0.369721 | 5_2:+8378438 | None:intergenic |
| TAATAGTCATGTTCAGTCTA+TGG | 0.373573 | 5_2:-8375912 | Msa0754680:CDS |
| ACATGTAGAAGCCAAAGTTT+TGG | 0.403189 | 5_2:-8375804 | Msa0754680:CDS |
| AACTAGCTGGTTATCTGATC+TGG | 0.407880 | 5_2:-8378862 | Msa0754680:intron |
| GAGGTCTGTGGCTCATAATC+AGG | 0.412438 | 5_2:-8378343 | Msa0754680:CDS |
| TTACGTAGTTAATAAGTGTT+TGG | 0.415950 | 5_2:+8373529 | None:intergenic |
| ATTATTGTTGCATCTACCAT+TGG | 0.417026 | 5_2:+8373579 | None:intergenic |
| TTATTGTTGCATCTACCATT+GGG | 0.417570 | 5_2:+8373580 | None:intergenic |
| TGGACAAGGATGTGCTCATA+AGG | 0.429386 | 5_2:-8375784 | Msa0754680:CDS |
| TTTCTGGTCAATTTATTTCG+AGG | 0.441020 | 5_2:+8379042 | None:intergenic |
| ATGGACAAGGCTTCAGTCCT+AGG | 0.441208 | 5_2:-8376001 | Msa0754680:CDS |
| TTGGAAGAAATGGAAATAGA+TGG | 0.445551 | 5_2:-8378711 | Msa0754680:CDS |
| AAGATAACAAAGGTTGATGT+TGG | 0.458857 | 5_2:+8378592 | None:intergenic |
| CAATTACCTCAAAATAGAAA+AGG | 0.462121 | 5_2:-8378423 | Msa0754680:CDS |
| TAATACTATTCGTGTCATCT+TGG | 0.462966 | 5_2:-8373489 | Msa0754680:three_prime_UTR |
| TGATATAACCATCGTTGCTC+AGG | 0.464649 | 5_2:-8375651 | Msa0754680:intron |
| GATCCACTGCCAAAAGCAAA+AGG | 0.466058 | 5_2:-8375762 | Msa0754680:CDS |
| TTCGTATCTTCTTTATAGCA+CGG | 0.491119 | 5_2:+8379012 | None:intergenic |
| TCTTATTCCTGGCTTGAAGA+AGG | 0.494711 | 5_2:-8378256 | Msa0754680:intron |
| AGTGAGCATGATAAAATCAA+TGG | 0.502461 | 5_2:+8373428 | None:intergenic |
| TTCTTCAGAAGTCATTATGT+AGG | 0.503771 | 5_2:+8373465 | None:intergenic |
| ATTATGAGCCACAGACCTCT+TGG | 0.506300 | 5_2:+8378347 | None:intergenic |
| ATTGGGGCCACATTCACGTT+AGG | 0.508391 | 5_2:+8373597 | None:intergenic |
| ATGATAAAATCAATGGTTCA+TGG | 0.513260 | 5_2:+8373435 | None:intergenic |
| CCATATACCTTCTTCAAGCC+AGG | 0.514414 | 5_2:+8378249 | None:intergenic |
| CGTACTTGATTGCATCTCCT+AGG | 0.518134 | 5_2:+8375984 | None:intergenic |
| AAGAGCTCCAAGAACGTTTG+AGG | 0.518931 | 5_2:-8375958 | Msa0754680:CDS |
| TCTTCAGAAGTCATTATGTA+GGG | 0.533712 | 5_2:+8373466 | None:intergenic |
| CAAACTCATCATCAACTAGC+TGG | 0.535900 | 5_2:-8378875 | Msa0754680:CDS |
| AATTACCTCAAAATAGAAAA+GGG | 0.536192 | 5_2:-8378422 | Msa0754680:CDS |
| TCATATGATATGATCATGGA+TGG | 0.547499 | 5_2:-8373557 | Msa0754680:three_prime_UTR |
| ATAATCATATGATATGATCA+TGG | 0.548325 | 5_2:-8373561 | Msa0754680:three_prime_UTR |
| AAAACTTTGGCTTCTACATG+TGG | 0.548591 | 5_2:+8375806 | None:intergenic |
| GAGCAACGATGGTTATATCA+AGG | 0.552186 | 5_2:+8375654 | None:intergenic |
| TAACGTGAATGTGGCCCCAA+TGG | 0.567361 | 5_2:-8373595 | Msa0754680:three_prime_UTR |
| AGAGCTCCAAGAACGTTTGA+GGG | 0.570082 | 5_2:-8375957 | Msa0754680:CDS |
| TCAAGGATAGAATCCCCAAA+AGG | 0.575129 | 5_2:+8375671 | None:intergenic |
| ATCCACTGCCAAAAGCAAAA+GGG | 0.579077 | 5_2:-8375761 | Msa0754680:CDS |
| GATGAGTCAGAACTTAGTTG+TGG | 0.581816 | 5_2:+8375875 | None:intergenic |
| TTTATTTACCTGAGCAACGA+TGG | 0.591261 | 5_2:+8375643 | None:intergenic |
| ACTACAAAGTCACAAGGACA+AGG | 0.603785 | 5_2:-8378372 | Msa0754680:CDS |
| GGATAGAATCCCCAAAAGGT+AGG | 0.609941 | 5_2:+8375675 | None:intergenic |
| TCATGTTCAGTCTATGGTGA+CGG | 0.614450 | 5_2:-8375906 | Msa0754680:CDS |
| TATTGTTGCATCTACCATTG+GGG | 0.619577 | 5_2:+8373581 | None:intergenic |
| TAATTGTCCTAACGTGAATG+TGG | 0.625906 | 5_2:-8373604 | Msa0754680:three_prime_UTR |
| AAACTTTGGCTTCTACATGT+GGG | 0.634166 | 5_2:+8375807 | None:intergenic |
| TAGCTTTCAGAAGATAACAA+AGG | 0.638184 | 5_2:+8378582 | None:intergenic |
| ACGTTAGGACAATTATAACA+TGG | 0.639666 | 5_2:+8373612 | None:intergenic |
| CACAAGGACAAGGGACCAAG+AGG | 0.647237 | 5_2:-8378362 | Msa0754680:CDS |
| ACAAGGGACCAAGAGGTCTG+TGG | 0.659567 | 5_2:-8378355 | Msa0754680:CDS |
| GATGATTCTGAAGCTGCTAG+TGG | 0.660614 | 5_2:-8375845 | Msa0754680:CDS |
| CTACAAAGTCACAAGGACAA+GGG | 0.698526 | 5_2:-8378371 | Msa0754680:CDS |
| GTTGAAACTACAAAGTCACA+AGG | 0.718556 | 5_2:-8378378 | Msa0754680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATATATAAAAATT+GGG | + | chr5_2:8374475-8374494 | None:intergenic | 0.0% |
| !! | ATAAATAAATATATAAAAAT+TGG | + | chr5_2:8374476-8374495 | None:intergenic | 0.0% |
| !!! | TTAAAAAATAATTTTATATT+AGG | - | chr5_2:8374838-8374857 | Msa0754680:intron | 0.0% |
| !!! | TTTTTTTTCAATTTTTTGTT+TGG | + | chr5_2:8373735-8373754 | None:intergenic | 10.0% |
| !!! | TTTATTTATTGTTTTAGTTA+TGG | - | chr5_2:8374487-8374506 | Msa0754680:intron | 10.0% |
| !!! | ATCATTTTTAATTTAATAAC+AGG | - | chr5_2:8375009-8375028 | Msa0754680:intron | 10.0% |
| !!! | AAAATATTTTTCCAATATAA+AGG | - | chr5_2:8375241-8375260 | Msa0754680:intron | 10.0% |
| !!! | TATTTATCCATAATTATTTT+GGG | + | chr5_2:8375279-8375298 | None:intergenic | 10.0% |
| !!! | TTATTTATCCATAATTATTT+TGG | + | chr5_2:8375280-8375299 | None:intergenic | 10.0% |
| !! | AATTGAAATAATTATTATGT+TGG | + | chr5_2:8375438-8375457 | None:intergenic | 10.0% |
| !!! | ACCAATTTTTTTTTTTTTTA+CGG | + | chr5_2:8376142-8376161 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATTGGTATA+AGG | - | chr5_2:8376145-8376164 | Msa0754680:intron | 10.0% |
| !! | AAATTTAATAAAAGTTCATA+CGG | + | chr5_2:8376794-8376813 | None:intergenic | 10.0% |
| !!! | ACTTTTATTAAATTTAAATG+CGG | - | chr5_2:8376799-8376818 | Msa0754680:intron | 10.0% |
| !! | TACATTTATAAATATTGAAA+AGG | + | chr5_2:8378394-8378413 | None:intergenic | 10.0% |
| !! | TACATTTATAAATATAGAAA+AGG | + | chr5_2:8378424-8378443 | None:intergenic | 10.0% |
| !!! | ATTTTTCATAGTTTAACTAA+CGG | + | chr5_2:8374644-8374663 | None:intergenic | 15.0% |
| !!! | AATACAAAATTTACTAGTTT+TGG | + | chr5_2:8374701-8374720 | None:intergenic | 15.0% |
| !! | ATTATTTCAATTTATGTACT+TGG | - | chr5_2:8375446-8375465 | Msa0754680:intron | 15.0% |
| !!! | TTTTCAACAAATTATATGTT+TGG | - | chr5_2:8375480-8375499 | Msa0754680:intron | 15.0% |
| !!! | ATTGATTTTAAATTGAAGTT+AGG | + | chr5_2:8375676-8375695 | None:intergenic | 15.0% |
| !! | ACCGTAAAAAAAAAAAAAAT+TGG | - | chr5_2:8376138-8376157 | Msa0754680:intron | 15.0% |
| !! | GATACTTTAAATGATTAAAA+AGG | + | chr5_2:8376673-8376692 | None:intergenic | 15.0% |
| !!! | GACTAAGATTATTATTATTT+TGG | + | chr5_2:8376942-8376961 | None:intergenic | 15.0% |
| !!! | TAGAGAATATTTCTATTTTT+AGG | + | chr5_2:8377203-8377222 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTGAATCTA+AGG | - | chr5_2:8377499-8377518 | Msa0754680:intron | 15.0% |
| !!! | AAGTCTAATATATTCTTTTA+AGG | + | chr5_2:8377562-8377581 | None:intergenic | 15.0% |
| !! | AAATTCCAAGAATTAAAAAA+TGG | - | chr5_2:8377821-8377840 | Msa0754680:intron | 15.0% |
| !!! | ATTTTTTGATAAAATGAAAC+AGG | - | chr5_2:8377884-8377903 | Msa0754680:intron | 15.0% |
| !!! | TTTTTTGATAAAATGAAACA+GGG | - | chr5_2:8377885-8377904 | Msa0754680:intron | 15.0% |
| !! | TTGATATGTGAAATTAATTA+AGG | - | chr5_2:8378037-8378056 | Msa0754680:intron | 15.0% |
| !! | AATTACAAAGAAATTAATCA+AGG | - | chr5_2:8378114-8378133 | Msa0754680:intron | 15.0% |
| !!! | TTGATTTGAGAAATTAATTA+AGG | - | chr5_2:8378475-8378494 | Msa0754680:CDS | 15.0% |
| !! | TGAGAATATATACATATAAT+TGG | - | chr5_2:8378936-8378955 | Msa0754680:five_prime_UTR | 15.0% |
| !! | TCAAATAATAGATTAAGATT+TGG | - | chr5_2:8378992-8379011 | Msa0754680:five_prime_UTR | 15.0% |
| !! | AATTATATGCACAAATGAAA+TGG | - | chr5_2:8373465-8373484 | Msa0754680:three_prime_UTR | 20.0% |
| !!! | TTATCCTTTAGAAAAGAATT+TGG | - | chr5_2:8373704-8373723 | Msa0754680:intron | 20.0% |
| !!! | CTTGTTCTTTTTTGTATTTA+AGG | + | chr5_2:8373790-8373809 | None:intergenic | 20.0% |
| !! | CTTAAATACAAAAAAGAACA+AGG | - | chr5_2:8373788-8373807 | Msa0754680:intron | 20.0% |
| !! | AATTACCTCAAAATAGAAAA+GGG | - | chr5_2:8373832-8373851 | Msa0754680:intron | 20.0% |
| !!! | ATTTATTAAAAGTACTGAGA+TGG | - | chr5_2:8374053-8374072 | Msa0754680:intron | 20.0% |
| !!! | TTAAGCAAACATTTTTTTGA+AGG | + | chr5_2:8374109-8374128 | None:intergenic | 20.0% |
| !! | TGTACTAGTATTTATTATGT+AGG | - | chr5_2:8374185-8374204 | Msa0754680:intron | 20.0% |
| !! | GTACTAGTATTTATTATGTA+GGG | - | chr5_2:8374186-8374205 | Msa0754680:intron | 20.0% |
| !! | TTTATGAATCTTAAACAAAG+CGG | + | chr5_2:8374212-8374231 | None:intergenic | 20.0% |
| !! | TGGTTATAGTATAATTATCT+TGG | - | chr5_2:8374507-8374526 | Msa0754680:intron | 20.0% |
| !!! | TTTTTCATAGTTTAACTAAC+GGG | + | chr5_2:8374643-8374662 | None:intergenic | 20.0% |
| !! | TGTTATAAGAACATTGTTTA+AGG | + | chr5_2:8374793-8374812 | None:intergenic | 20.0% |
| !!! | GAATTGTTTTTCCTTTATAT+TGG | + | chr5_2:8375255-8375274 | None:intergenic | 20.0% |
| !!! | TAAGTTTGTTTGTTCTTTAT+TGG | + | chr5_2:8375718-8375737 | None:intergenic | 20.0% |
| !! | TTCGTATGATGTTAATTAAT+TGG | - | chr5_2:8375817-8375836 | Msa0754680:CDS | 20.0% |
| !! | GATGTTAATTAATTGGTATA+AGG | - | chr5_2:8375824-8375843 | Msa0754680:CDS | 20.0% |
| !! | TAATTAATTGGTATAAGGTT+TGG | - | chr5_2:8375829-8375848 | Msa0754680:CDS | 20.0% |
| !!! | TCTTTTTTTCTATCCAATTA+CGG | + | chr5_2:8375872-8375891 | None:intergenic | 20.0% |
| !! | ACTAGTTAGCTATTAATTAT+AGG | - | chr5_2:8376179-8376198 | Msa0754680:intron | 20.0% |
| !! | GTAAAAAAAAAATCTACAGA+TGG | - | chr5_2:8376234-8376253 | Msa0754680:intron | 20.0% |
| !!! | GTATAAATCGATTTTCTAAA+AGG | - | chr5_2:8376838-8376857 | Msa0754680:intron | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | + | chr5_2:8377007-8377026 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr5_2:8377008-8377027 | None:intergenic | 20.0% |
| !! | ATTCATTAATTTATGCCTTA+AGG | - | chr5_2:8377302-8377321 | Msa0754680:intron | 20.0% |
| !! | TTCATTAATTTATGCCTTAA+GGG | - | chr5_2:8377303-8377322 | Msa0754680:intron | 20.0% |
| !!! | CAAGGTTGATATATTTTTTA+AGG | + | chr5_2:8377345-8377364 | None:intergenic | 20.0% |
| !!! | TACTTCCATTTTTTAATTCT+TGG | + | chr5_2:8377829-8377848 | None:intergenic | 20.0% |
| !!! | TTTTTGATAAAATGAAACAG+GGG | - | chr5_2:8377886-8377905 | Msa0754680:intron | 20.0% |
| !! | TACATTTATGAAGATTGAAA+GGG | + | chr5_2:8377984-8378003 | None:intergenic | 20.0% |
| !! | ATACATTTATGAAGATTGAA+AGG | + | chr5_2:8377985-8378004 | None:intergenic | 20.0% |
| !!! | ATCATCAACTTTTTTTTACA+AGG | + | chr5_2:8378351-8378370 | None:intergenic | 20.0% |
| !! | TCTCAAATCAATTGAAAATT+TGG | + | chr5_2:8378466-8378485 | None:intergenic | 20.0% |
| !! | ATAATCATATGATATGATCA+TGG | - | chr5_2:8378693-8378712 | Msa0754680:CDS | 20.0% |
| !!! | AGTCTTGTTCTATGATAAAT+TGG | - | chr5_2:8373269-8373288 | Msa0754680:three_prime_UTR | 25.0% |
| ! | TGTTTCACAATTTAAGAGAT+TGG | + | chr5_2:8373299-8373318 | None:intergenic | 25.0% |
| ! | AATCACATCAATAGTCATTA+TGG | - | chr5_2:8373338-8373357 | Msa0754680:three_prime_UTR | 25.0% |
| !!! | AGAAAGTATTTTTCAACAAG+AGG | - | chr5_2:8373632-8373651 | Msa0754680:CDS | 25.0% |
| !! | CTTTCCAAATTCTTTTCTAA+AGG | + | chr5_2:8373711-8373730 | None:intergenic | 25.0% |
| ! | CAATTACCTCAAAATAGAAA+AGG | - | chr5_2:8373831-8373850 | Msa0754680:intron | 25.0% |
| ! | GGACATATTAATTTCATGTT+TGG | - | chr5_2:8374074-8374093 | Msa0754680:intron | 25.0% |
| ! | ATACTAGTACAAACTTAAAG+TGG | + | chr5_2:8374176-8374195 | None:intergenic | 25.0% |
| !! | TAATGCTAATTTGTACTCTT+AGG | + | chr5_2:8374452-8374471 | None:intergenic | 25.0% |
| !! | TTAATTTTCTTGAGTGAAAG+TGG | + | chr5_2:8374953-8374972 | None:intergenic | 25.0% |
| !! | GCTATCTGAATTAACTTTTA+AGG | - | chr5_2:8374983-8375002 | Msa0754680:intron | 25.0% |
| ! | CAATTCACCCAAAATAATTA+TGG | - | chr5_2:8375269-8375288 | Msa0754680:intron | 25.0% |
| !!! | TTATGTACTTGGTTTTGAAT+TGG | - | chr5_2:8375457-8375476 | Msa0754680:intron | 25.0% |
| ! | AAATTATATGTTTGGATCTG+CGG | - | chr5_2:8375488-8375507 | Msa0754680:intron | 25.0% |
| !! | ACTATTTAGGTTTGATATCA+TGG | + | chr5_2:8375786-8375805 | None:intergenic | 25.0% |
| ! | AATAGCTAACATGACTATTT+AGG | + | chr5_2:8375799-8375818 | None:intergenic | 25.0% |
| !!! | TATTGGCTCTTTAAAATTGT+TGG | - | chr5_2:8376043-8376062 | Msa0754680:intron | 25.0% |
| !!! | ATTGGCTCTTTAAAATTGTT+GGG | - | chr5_2:8376044-8376063 | Msa0754680:intron | 25.0% |
| ! | TTAATAAAAGTTCATACGGT+TGG | + | chr5_2:8376790-8376809 | None:intergenic | 25.0% |
| !! | AGAAAATCGATTTATACCAT+CGG | + | chr5_2:8376835-8376854 | None:intergenic | 25.0% |
| !!! | ATTTTCTAAAAGGACTTGTT+TGG | - | chr5_2:8376848-8376867 | Msa0754680:intron | 25.0% |
| !!! | TTTTCTAAAAGGACTTGTTT+GGG | - | chr5_2:8376849-8376868 | Msa0754680:intron | 25.0% |
| ! | TCTTAGTCATCTATTTAGAA+AGG | - | chr5_2:8376954-8376973 | Msa0754680:intron | 25.0% |
| ! | CTTAGTCATCTATTTAGAAA+GGG | - | chr5_2:8376955-8376974 | Msa0754680:intron | 25.0% |
| ! | AACATTTCCCATTTAGAAAA+TGG | - | chr5_2:8377138-8377157 | Msa0754680:intron | 25.0% |
| ! | ACATTTCCCATTTAGAAAAT+GGG | - | chr5_2:8377139-8377158 | Msa0754680:intron | 25.0% |
| ! | CAAATATCGAAATAGTACAT+TGG | + | chr5_2:8377282-8377301 | None:intergenic | 25.0% |
| ! | ACCTTGTACTAAAAATGATT+AGG | - | chr5_2:8377359-8377378 | Msa0754680:intron | 25.0% |
| !!! | ACCTAATCATTTTTAGTACA+AGG | + | chr5_2:8377363-8377382 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTCCTAAATTTCG+AGG | - | chr5_2:8377667-8377686 | Msa0754680:intron | 25.0% |
| ! | TTTAAAAACTGCTTGTGAAA+AGG | + | chr5_2:8378017-8378036 | None:intergenic | 25.0% |
| ! | ATGTGAAATTAATTAAGGAG+AGG | - | chr5_2:8378042-8378061 | Msa0754680:intron | 25.0% |
| !!! | GAGAGGTTTTATTTTGTATT+TGG | - | chr5_2:8378059-8378078 | Msa0754680:intron | 25.0% |
| !! | TTTTGTATTTGGAAACAAAG+AGG | - | chr5_2:8378070-8378089 | Msa0754680:intron | 25.0% |
| ! | TTTGTATTTGGAAACAAAGA+GGG | - | chr5_2:8378071-8378090 | Msa0754680:intron | 25.0% |
| !!! | ATGATTATTGATGACGTTTT+TGG | + | chr5_2:8378150-8378169 | None:intergenic | 25.0% |
| ! | ACTATTTCCCTTGAATTATT+TGG | - | chr5_2:8378503-8378522 | Msa0754680:CDS | 25.0% |
| ! | CTATTTCCCTTGAATTATTT+GGG | - | chr5_2:8378504-8378523 | Msa0754680:CDS | 25.0% |
| ! | TCATTTCCCAAATAATTCAA+GGG | + | chr5_2:8378513-8378532 | None:intergenic | 25.0% |
| ! | CTGCAAAAAAAAAAATCGTT+TGG | + | chr5_2:8378555-8378574 | None:intergenic | 25.0% |
| !!! | ACGATTTTTTTTTTTGCAGA+TGG | - | chr5_2:8378556-8378575 | Msa0754680:CDS | 25.0% |
| !!! | CGATTTTTTTTTTTGCAGAT+GGG | - | chr5_2:8378557-8378576 | Msa0754680:CDS | 25.0% |
| ! | TTACGTAGTTAATAAGTGTT+TGG | + | chr5_2:8378728-8378747 | None:intergenic | 25.0% |
| ! | ATGATAAAATCAATGGTTCA+TGG | + | chr5_2:8378822-8378841 | None:intergenic | 25.0% |
| TTCGTATCTTCTTTATAGCA+CGG | + | chr5_2:8373245-8373264 | None:intergenic | 30.0% | |
| TTGGAAGAAATGGAAATAGA+TGG | - | chr5_2:8373543-8373562 | Msa0754680:three_prime_UTR | 30.0% | |
| !! | AAGATAACAAAGGTTGATGT+TGG | + | chr5_2:8373665-8373684 | None:intergenic | 30.0% |
| TAGCTTTCAGAAGATAACAA+AGG | + | chr5_2:8373675-8373694 | None:intergenic | 30.0% | |
| ! | AATGACCCTTTTCTATTTTG+AGG | + | chr5_2:8373840-8373859 | None:intergenic | 30.0% |
| ATCAGATAGATAGAACTTGT+CGG | + | chr5_2:8375108-8375127 | None:intergenic | 30.0% | |
| ! | TGGGTTAAAAGTTTTTCACA+TGG | - | chr5_2:8375202-8375221 | Msa0754680:intron | 30.0% |
| CAATCTAGACATCAATAAGA+TGG | + | chr5_2:8375304-8375323 | None:intergenic | 30.0% | |
| ! | ACGATGAATCAACACATTTT+TGG | - | chr5_2:8375344-8375363 | Msa0754680:intron | 30.0% |
| !! | GTACTACTCTATTTCTATCA+AGG | - | chr5_2:8375373-8375392 | Msa0754680:intron | 30.0% |
| GAGAAAAACTTACTTTCAAC+CGG | + | chr5_2:8375416-8375435 | None:intergenic | 30.0% | |
| ! | AAACTCAATTTTACATCTCC+AGG | - | chr5_2:8375740-8375759 | Msa0754680:CDS | 30.0% |
| ! | AACTCAATTTTACATCTCCA+GGG | - | chr5_2:8375741-8375760 | Msa0754680:CDS | 30.0% |
| ! | TAATTGGTATAAGGTTTGGT+TGG | - | chr5_2:8375833-8375852 | Msa0754680:CDS | 30.0% |
| !! | TCCAATTACGGATCATTTTT+GGG | + | chr5_2:8375860-8375879 | None:intergenic | 30.0% |
| ! | ATCCAATTACGGATCATTTT+TGG | + | chr5_2:8375861-8375880 | None:intergenic | 30.0% |
| TTGGATAGAAAAAAAGACTC+TGG | - | chr5_2:8375875-8375894 | Msa0754680:CDS | 30.0% | |
| ! | GTAGTCTTTTTCTCTTGTAT+TGG | - | chr5_2:8376026-8376045 | Msa0754680:intron | 30.0% |
| AGCTAGTGTTAATATTGAAG+GGG | + | chr5_2:8376075-8376094 | None:intergenic | 30.0% | |
| CAGCTAGTGTTAATATTGAA+GGG | + | chr5_2:8376076-8376095 | None:intergenic | 30.0% | |
| ACAGCTAGTGTTAATATTGA+AGG | + | chr5_2:8376077-8376096 | None:intergenic | 30.0% | |
| AAAAAATCTACAGATGGACA+AGG | - | chr5_2:8376240-8376259 | Msa0754680:intron | 30.0% | |
| TAATAGTCATGTTCAGTCTA+TGG | - | chr5_2:8376342-8376361 | Msa0754680:intron | 30.0% | |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr5_2:8376867-8376886 | Msa0754680:intron | 30.0% |
| ! | TTTTGGTCAAATGCATCTAA+AGG | + | chr5_2:8376925-8376944 | None:intergenic | 30.0% |
| !!! | TCCATTTTTGGGTTGTTTAA+GGG | + | chr5_2:8376996-8377015 | None:intergenic | 30.0% |
| !!! | TTCCATTTTTGGGTTGTTTA+AGG | + | chr5_2:8376997-8377016 | None:intergenic | 30.0% |
| ! | ACACTACCCATTTTCTAAAT+GGG | + | chr5_2:8377148-8377167 | None:intergenic | 30.0% |
| ! | AACACTACCCATTTTCTAAA+TGG | + | chr5_2:8377149-8377168 | None:intergenic | 30.0% |
| ATGATTAGGTAACTAAGCAA+TGG | - | chr5_2:8377373-8377392 | Msa0754680:intron | 30.0% | |
| TGATTAGGTAACTAAGCAAT+GGG | - | chr5_2:8377374-8377393 | Msa0754680:intron | 30.0% | |
| ! | TTGAATCTAAGGTTCGAAAA+TGG | - | chr5_2:8377510-8377529 | Msa0754680:intron | 30.0% |
| TCAATTAAGCCTCGAAATTT+AGG | + | chr5_2:8377679-8377698 | None:intergenic | 30.0% | |
| AAACCTTAATTTAGACTGCT+TGG | - | chr5_2:8377698-8377717 | Msa0754680:intron | 30.0% | |
| AACCTTAATTTAGACTGCTT+GGG | - | chr5_2:8377699-8377718 | Msa0754680:intron | 30.0% | |
| AATCATCTGAGTGATTTGAA+TGG | - | chr5_2:8378164-8378183 | Msa0754680:intron | 30.0% | |
| TATTGAAAAGGACACAAGAA+GGG | + | chr5_2:8378382-8378401 | None:intergenic | 30.0% | |
| ATATTGAAAAGGACACAAGA+AGG | + | chr5_2:8378383-8378402 | None:intergenic | 30.0% | |
| TTGAAAATTTGGTTGTCGAA+AGG | + | chr5_2:8378455-8378474 | None:intergenic | 30.0% | |
| CTCATTTCCCAAATAATTCA+AGG | + | chr5_2:8378514-8378533 | None:intergenic | 30.0% | |
| CTTGAATTATTTGGGAAATG+AGG | - | chr5_2:8378512-8378531 | Msa0754680:CDS | 30.0% | |
| !!! | TTTTTTTTTGCAGATGGGAA+CGG | - | chr5_2:8378562-8378581 | Msa0754680:CDS | 30.0% |
| !! | CTTTTTCACAAGATCATTTC+TGG | + | chr5_2:8378600-8378619 | None:intergenic | 30.0% |
| ACGTTAGGACAATTATAACA+TGG | + | chr5_2:8378645-8378664 | None:intergenic | 30.0% | |
| TTATTGTTGCATCTACCATT+GGG | + | chr5_2:8378677-8378696 | None:intergenic | 30.0% | |
| ATTATTGTTGCATCTACCAT+TGG | + | chr5_2:8378678-8378697 | None:intergenic | 30.0% | |
| TCATATGATATGATCATGGA+TGG | - | chr5_2:8378697-8378716 | Msa0754680:CDS | 30.0% | |
| TAATACTATTCGTGTCATCT+TGG | - | chr5_2:8378765-8378784 | Msa0754680:intron | 30.0% | |
| TCTTCAGAAGTCATTATGTA+GGG | + | chr5_2:8378791-8378810 | None:intergenic | 30.0% | |
| TTCTTCAGAAGTCATTATGT+AGG | + | chr5_2:8378792-8378811 | None:intergenic | 30.0% | |
| AGTGAGCATGATAAAATCAA+TGG | + | chr5_2:8378829-8378848 | None:intergenic | 30.0% | |
| !! | TTGTGTTTTGTTCCAGCTAT+TGG | - | chr5_2:8373524-8373543 | Msa0754680:three_prime_UTR | 35.0% |
| TTTCCATTTCTTCCAATAGC+TGG | + | chr5_2:8373539-8373558 | None:intergenic | 35.0% | |
| ! | CAACGTGAACAAAACTTGTT+TGG | - | chr5_2:8373582-8373601 | Msa0754680:three_prime_UTR | 35.0% |
| GGTAATTGTGTTTGTGAGAA+TGG | + | chr5_2:8373819-8373838 | None:intergenic | 35.0% | |
| GTTGAAACTACAAAGTCACA+AGG | - | chr5_2:8373876-8373895 | Msa0754680:intron | 35.0% | |
| TCTTTCTCTCTGCTATGATA+TGG | + | chr5_2:8373938-8373957 | None:intergenic | 35.0% | |
| AGGACACTAGTTACTAGTTA+AGG | + | chr5_2:8374600-8374619 | None:intergenic | 35.0% | |
| TTAACTAGTAACTAGTGTCC+TGG | - | chr5_2:8374599-8374618 | Msa0754680:intron | 35.0% | |
| TAACTAGTAACTAGTGTCCT+GGG | - | chr5_2:8374600-8374619 | Msa0754680:intron | 35.0% | |
| TCGTAAATACTCATTCCTCA+AGG | - | chr5_2:8374905-8374924 | Msa0754680:intron | 35.0% | |
| TAGAACATCAAATGTTGCGT+GGG | - | chr5_2:8375183-8375202 | Msa0754680:intron | 35.0% | |
| GGATTATGTCGAATTTCAAC+CGG | - | chr5_2:8375394-8375413 | Msa0754680:intron | 35.0% | |
| TCCCAAAAATGATCCGTAAT+TGG | - | chr5_2:8375856-8375875 | Msa0754680:CDS | 35.0% | |
| AAACTTTGCAGACAAGTATG+AGG | + | chr5_2:8375982-8376001 | None:intergenic | 35.0% | |
| ATACTTGTCTGCAAAGTTTC+TGG | - | chr5_2:8375983-8376002 | Msa0754680:CDS | 35.0% | |
| TACTTGTCTGCAAAGTTTCT+GGG | - | chr5_2:8375984-8376003 | Msa0754680:CDS | 35.0% | |
| ! | AAACTTTGGCTTCTACATGT+GGG | + | chr5_2:8376450-8376469 | None:intergenic | 35.0% |
| ! | AAAACTTTGGCTTCTACATG+TGG | + | chr5_2:8376451-8376470 | None:intergenic | 35.0% |
| ! | ACATGTAGAAGCCAAAGTTT+TGG | - | chr5_2:8376450-8376469 | Msa0754680:intron | 35.0% |
| ! | GGGACTTTTGCTCAAAATAT+TGG | - | chr5_2:8376513-8376532 | Msa0754680:intron | 35.0% |
| ! | AATAACAGTGTCCTACCTTT+TGG | - | chr5_2:8376568-8376587 | Msa0754680:intron | 35.0% |
| ! | ATAACAGTGTCCTACCTTTT+GGG | - | chr5_2:8376569-8376588 | Msa0754680:intron | 35.0% |
| TTTATTTACCTGAGCAACGA+TGG | + | chr5_2:8376614-8376633 | None:intergenic | 35.0% | |
| TCGGGATTATTCTAATAGTG+CGG | + | chr5_2:8376751-8376770 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | - | chr5_2:8376877-8376896 | Msa0754680:intron | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | - | chr5_2:8376878-8376897 | Msa0754680:intron | 35.0% | |
| GGGAAGAACGAAAAACTTAA+AGG | - | chr5_2:8376898-8376917 | Msa0754680:intron | 35.0% | |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr5_2:8377106-8377125 | Msa0754680:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr5_2:8377107-8377126 | Msa0754680:intron | 35.0% |
| !! | TTTCTTAACTTGTGCCCTTA+GGG | + | chr5_2:8377180-8377199 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr5_2:8377320-8377339 | None:intergenic | 35.0% |
| GATTAGGTAACTAAGCAATG+GGG | - | chr5_2:8377375-8377394 | Msa0754680:intron | 35.0% | |
| ACCTTAATTTAGACTGCTTG+GGG | - | chr5_2:8377700-8377719 | Msa0754680:intron | 35.0% | |
| ATTGAAAAGGACACAAGAAG+GGG | + | chr5_2:8378381-8378400 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCAGATGGGAAC+GGG | - | chr5_2:8378563-8378582 | Msa0754680:CDS | 35.0% |
| TAATTGTCCTAACGTGAATG+TGG | - | chr5_2:8378650-8378669 | Msa0754680:CDS | 35.0% | |
| TATTGTTGCATCTACCATTG+GGG | + | chr5_2:8378676-8378695 | None:intergenic | 35.0% | |
| ! | ATTTTATCATGCTCACTCTG+TGG | - | chr5_2:8378832-8378851 | Msa0754680:intron | 35.0% |
| !! | ATAGCACGGTTTCTAGTTTC+TGG | + | chr5_2:8373231-8373250 | None:intergenic | 40.0% |
| CAAACTCATCATCAACTAGC+TGG | - | chr5_2:8373379-8373398 | Msa0754680:three_prime_UTR | 40.0% | |
| AACTAGCTGGTTATCTGATC+TGG | - | chr5_2:8373392-8373411 | Msa0754680:three_prime_UTR | 40.0% | |
| GTTCCAGCTATTGGAAGAAA+TGG | - | chr5_2:8373533-8373552 | Msa0754680:three_prime_UTR | 40.0% | |
| ACTACAAAGTCACAAGGACA+AGG | - | chr5_2:8373882-8373901 | Msa0754680:intron | 40.0% | |
| CTACAAAGTCACAAGGACAA+GGG | - | chr5_2:8373883-8373902 | Msa0754680:intron | 40.0% | |
| ! | TCTTATTCCTGGCTTGAAGA+AGG | - | chr5_2:8373998-8374017 | Msa0754680:intron | 40.0% |
| AACTAGTAACTAGTGTCCTG+GGG | - | chr5_2:8374601-8374620 | Msa0754680:intron | 40.0% | |
| ! | ATTGAAGTTTGCTTGCCTTG+AGG | + | chr5_2:8374923-8374942 | None:intergenic | 40.0% |
| CTAGAACATCAAATGTTGCG+TGG | - | chr5_2:8375182-8375201 | Msa0754680:intron | 40.0% | |
| CCATCTTCTATGTCTGACAA+AGG | + | chr5_2:8375913-8375932 | None:intergenic | 40.0% | |
| CCTTTGTCAGACATAGAAGA+TGG | - | chr5_2:8375910-8375929 | Msa0754680:CDS | 40.0% | |
| TAGAAGATGGAAGCTGTTGA+TGG | - | chr5_2:8375923-8375942 | Msa0754680:CDS | 40.0% | |
| CTAATACCCTCAAACGTTCT+TGG | + | chr5_2:8376306-8376325 | None:intergenic | 40.0% | |
| TCATGTTCAGTCTATGGTGA+CGG | - | chr5_2:8376348-8376367 | Msa0754680:intron | 40.0% | |
| GATGAGTCAGAACTTAGTTG+TGG | + | chr5_2:8376382-8376401 | None:intergenic | 40.0% | |
| !!! | AGAAGCCAAAGTTTTGGACA+AGG | - | chr5_2:8376456-8376475 | Msa0754680:intron | 40.0% |
| CACATCCTTGTCCAAAACTT+TGG | + | chr5_2:8376464-8376483 | None:intergenic | 40.0% | |
| ATCCACTGCCAAAAGCAAAA+GGG | - | chr5_2:8376493-8376512 | Msa0754680:intron | 40.0% | |
| ! | GCAAAAGTCCCTTTTGCTTT+TGG | + | chr5_2:8376504-8376523 | None:intergenic | 40.0% |
| ! | TAACAGTGTCCTACCTTTTG+GGG | - | chr5_2:8376570-8376589 | Msa0754680:intron | 40.0% |
| TCAAGGATAGAATCCCCAAA+AGG | + | chr5_2:8376586-8376605 | None:intergenic | 40.0% | |
| GAGCAACGATGGTTATATCA+AGG | + | chr5_2:8376603-8376622 | None:intergenic | 40.0% | |
| TGATATAACCATCGTTGCTC+AGG | - | chr5_2:8376603-8376622 | Msa0754680:intron | 40.0% | |
| ! | GTTTTTCGTTCTTCCCAAAG+TGG | + | chr5_2:8376894-8376913 | None:intergenic | 40.0% |
| GCCCTTAAACAACCCAAAAA+TGG | - | chr5_2:8376992-8377011 | Msa0754680:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr5_2:8377124-8377143 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTA+AGG | - | chr5_2:8377162-8377181 | Msa0754680:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTAA+GGG | - | chr5_2:8377163-8377182 | Msa0754680:intron | 40.0% |
| !! | GTTTCTTAACTTGTGCCCTT+AGG | + | chr5_2:8377181-8377200 | None:intergenic | 40.0% |
| ! | TGCTTGGGGCATTTATTCAA+TGG | - | chr5_2:8377714-8377733 | Msa0754680:intron | 40.0% |
| TGAAACAGGGGAGTAAATAG+AGG | - | chr5_2:8377898-8377917 | Msa0754680:intron | 40.0% | |
| TGCTTGTGAAAAGGAGAACA+AGG | + | chr5_2:8378008-8378027 | None:intergenic | 40.0% | |
| TTGAAAAGGACACAAGAAGG+GGG | + | chr5_2:8378380-8378399 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGCAGATGGGAACG+GGG | - | chr5_2:8378564-8378583 | Msa0754680:CDS | 40.0% |
| TCTTGTGAAAAAGCTACGTG+TGG | - | chr5_2:8378607-8378626 | Msa0754680:CDS | 40.0% | |
| ATTATGAGCCACAGACCTCT+TGG | + | chr5_2:8373910-8373929 | None:intergenic | 45.0% | |
| CCATATACCTTCTTCAAGCC+AGG | + | chr5_2:8374008-8374027 | None:intergenic | 45.0% | |
| ! | CCTGGCTTGAAGAAGGTATA+TGG | - | chr5_2:8374005-8374024 | Msa0754680:intron | 45.0% |
| ACTAGTAACTAGTGTCCTGG+GGG | - | chr5_2:8374602-8374621 | Msa0754680:intron | 45.0% | |
| TGAGCAACTAGAATTGACCC+TGG | + | chr5_2:8375761-8375780 | None:intergenic | 45.0% | |
| !! | GATGGAAGCTGTTGATGGTT+TGG | - | chr5_2:8375928-8375947 | Msa0754680:CDS | 45.0% |
| CGTACTTGATTGCATCTCCT+AGG | + | chr5_2:8376273-8376292 | None:intergenic | 45.0% | |
| AAGAGCTCCAAGAACGTTTG+AGG | - | chr5_2:8376296-8376315 | Msa0754680:intron | 45.0% | |
| AGAGCTCCAAGAACGTTTGA+GGG | - | chr5_2:8376297-8376316 | Msa0754680:intron | 45.0% | |
| !! | GATGATTCTGAAGCTGCTAG+TGG | - | chr5_2:8376409-8376428 | Msa0754680:intron | 45.0% |
| TGGACAAGGATGTGCTCATA+AGG | - | chr5_2:8376470-8376489 | Msa0754680:intron | 45.0% | |
| GATCCACTGCCAAAAGCAAA+AGG | - | chr5_2:8376492-8376511 | Msa0754680:intron | 45.0% | |
| GGATAGAATCCCCAAAAGGT+AGG | + | chr5_2:8376582-8376601 | None:intergenic | 45.0% | |
| AATCCCGAGCATCTTAAGCT+AGG | - | chr5_2:8376763-8376782 | Msa0754680:intron | 45.0% | |
| TGGTCCTAGCTTAAGATGCT+CGG | + | chr5_2:8376770-8376789 | None:intergenic | 45.0% | |
| ! | ATGCGGTTTTCTTCATCCGA+TGG | - | chr5_2:8376816-8376835 | Msa0754680:intron | 45.0% |
| TAGGTAACTAAGCAATGGGG+AGG | - | chr5_2:8377378-8377397 | Msa0754680:intron | 45.0% | |
| CGAAACATGTTCAGTCAGCA+CGG | + | chr5_2:8377411-8377430 | None:intergenic | 45.0% | |
| GCCCCAAGCAGTCTAAATTA+AGG | + | chr5_2:8377704-8377723 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTAAATAGTTTAA+GGG | + | chr5_2:8374829-8374848 | None:intergenic | 5.0% |
| !!! | ATTATTTTTTAAATAGTTTA+AGG | + | chr5_2:8374830-8374849 | None:intergenic | 5.0% |
| !! | AATTAAATTATATTTATTTG+AGG | - | chr5_2:8377643-8377662 | Msa0754680:intron | 5.0% |
| GAGGTCTGTGGCTCATAATC+AGG | - | chr5_2:8373911-8373930 | Msa0754680:intron | 50.0% | |
| GCTCTAGCTGCTCTTATTCC+TGG | - | chr5_2:8373987-8374006 | Msa0754680:intron | 50.0% | |
| TCTTGTTAACTAGTGCCCCC+AGG | + | chr5_2:8374620-8374639 | None:intergenic | 50.0% | |
| ATGGACAAGGCTTCAGTCCT+AGG | - | chr5_2:8376253-8376272 | Msa0754680:intron | 50.0% | |
| !! | GTCCCTTTTGCTTTTGGCAG+TGG | + | chr5_2:8376498-8376517 | None:intergenic | 50.0% |
| GGTCCTAGCTTAAGATGCTC+GGG | + | chr5_2:8376769-8376788 | None:intergenic | 50.0% | |
| ATTGGGGCCACATTCACGTT+AGG | + | chr5_2:8378660-8378679 | None:intergenic | 50.0% | |
| TAACGTGAATGTGGCCCCAA+TGG | - | chr5_2:8378659-8378678 | Msa0754680:CDS | 50.0% | |
| CACAAGGACAAGGGACCAAG+AGG | - | chr5_2:8373892-8373911 | Msa0754680:intron | 55.0% | |
| ACAAGGGACCAAGAGGTCTG+TGG | - | chr5_2:8373899-8373918 | Msa0754680:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 8373213 | 8379063 | 8373213 | ID=Msa0754680;Name=Msa0754680 |
| chr5_2 | mRNA | 8373213 | 8379063 | 8373213 | ID=Msa0754680-mRNA-1;Parent=Msa0754680;Name=Msa0754680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|1|1|1|1|1|4|411|328 |
| chr5_2 | exon | 8373213 | 8373701 | 8373213 | ID=Msa0754680-mRNA-1:exon:3795;Parent=Msa0754680-mRNA-1 |
| chr5_2 | exon | 8375652 | 8376023 | 8375652 | ID=Msa0754680-mRNA-1:exon:3794;Parent=Msa0754680-mRNA-1 |
| chr5_2 | exon | 8378257 | 8378736 | 8378257 | ID=Msa0754680-mRNA-1:exon:3793;Parent=Msa0754680-mRNA-1 |
| chr5_2 | exon | 8378863 | 8379063 | 8378863 | ID=Msa0754680-mRNA-1:exon:3792;Parent=Msa0754680-mRNA-1 |
| chr5_2 | five_prime_UTR | 8378920 | 8379063 | 8378920 | ID=Msa0754680-mRNA-1:five_prime_utr;Parent=Msa0754680-mRNA-1 |
| chr5_2 | CDS | 8378863 | 8378919 | 8378863 | ID=Msa0754680-mRNA-1:cds;Parent=Msa0754680-mRNA-1 |
| chr5_2 | CDS | 8378257 | 8378736 | 8378257 | ID=Msa0754680-mRNA-1:cds;Parent=Msa0754680-mRNA-1 |
| chr5_2 | CDS | 8375652 | 8376023 | 8375652 | ID=Msa0754680-mRNA-1:cds;Parent=Msa0754680-mRNA-1 |
| chr5_2 | CDS | 8373624 | 8373701 | 8373624 | ID=Msa0754680-mRNA-1:cds;Parent=Msa0754680-mRNA-1 |
| chr5_2 | three_prime_UTR | 8373213 | 8373623 | 8373213 | ID=Msa0754680-mRNA-1:three_prime_utr;Parent=Msa0754680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
