Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713980 | XP_003611609.2 | 96.278 | 403 | 15 | 0 | 1 | 403 | 1 | 403 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713980 | sp|O64815|HLS1L_ARATH | 68.357 | 414 | 113 | 4 | 6 | 403 | 2 | 413 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713980 | G7K3U7 | 96.278 | 403 | 15 | 0 | 1 | 403 | 1 | 403 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0713980 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713980 | Msa0756200 | 0.835412 | 1.703651e-56 | -8.615850e-47 |
| Msa0713980 | Msa0756230 | 0.841205 | 5.472494e-58 | -8.615850e-47 |
| Msa0713980 | Msa0835390 | 0.806476 | 8.074440e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713980 | MtrunA17_Chr5g0401351 | 96.278 | 403 | 15 | 0 | 1 | 403 | 1 | 403 | 0.0 | 803 |
| Msa0713980 | MtrunA17_Chr4g0053961 | 70.803 | 411 | 110 | 4 | 3 | 403 | 1 | 411 | 0.0 | 609 |
| Msa0713980 | MtrunA17_Chr4g0001411 | 47.922 | 409 | 185 | 7 | 5 | 403 | 19 | 409 | 2.72e-126 | 370 |
| Msa0713980 | MtrunA17_Chr3g0105631 | 47.236 | 398 | 188 | 6 | 11 | 403 | 8 | 388 | 3.88e-119 | 351 |
| Msa0713980 | MtrunA17_Chr4g0068331 | 34.307 | 411 | 238 | 12 | 9 | 402 | 11 | 406 | 1.93e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713980 | AT2G23060.1 | 68.357 | 414 | 113 | 4 | 6 | 403 | 2 | 413 | 0.0 | 570 |
| Msa0713980 | AT4G37580.1 | 67.082 | 401 | 125 | 3 | 10 | 403 | 3 | 403 | 0.0 | 545 |
| Msa0713980 | AT5G67430.1 | 60.253 | 395 | 141 | 6 | 9 | 403 | 8 | 386 | 7.55e-168 | 475 |
| Msa0713980 | AT4G37580.2 | 67.742 | 341 | 106 | 2 | 67 | 403 | 6 | 346 | 6.13e-166 | 469 |
| Msa0713980 | AT2G23060.2 | 70.251 | 279 | 80 | 1 | 128 | 403 | 1 | 279 | 1.06e-144 | 412 |
| Msa0713980 | AT5G67430.2 | 61.446 | 332 | 117 | 5 | 72 | 403 | 1 | 321 | 1.39e-142 | 409 |
| Msa0713980 | AT2G30090.1 | 41.791 | 402 | 195 | 7 | 11 | 403 | 15 | 386 | 1.49e-95 | 291 |
Find 98 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAATGACACGTATTT+TGG | 0.110291 | 5_1:-6556575 | Msa0713980:CDS |
| TTAACCATCTTCACCTTCTT+TGG | 0.150962 | 5_1:+6556460 | None:intergenic |
| TATCTTGTGCTAATGATTTA+TGG | 0.159818 | 5_1:-6556324 | Msa0713980:CDS |
| CCGGATTTGTTTAGGCCTTT+TGG | 0.177590 | 5_1:-6556517 | Msa0713980:CDS |
| TGGCCCAGATAGGTTTCTTT+TGG | 0.229875 | 5_1:-6556692 | Msa0713980:CDS |
| TTGTGGGTTTGCGCATAATT+TGG | 0.260941 | 5_1:-6556431 | Msa0713980:CDS |
| TGCTTGGTGACCCCATTTGC+AGG | 0.320702 | 5_1:-6557576 | Msa0713980:CDS |
| TAACCATCTTCACCTTCTTT+GGG | 0.322009 | 5_1:+6556461 | None:intergenic |
| GCCTAAAATGTAAGCGAGTT+TGG | 0.325207 | 5_1:+6557241 | None:intergenic |
| AGAACAGCGTCAATGTCATT+AGG | 0.331188 | 5_1:+6556784 | None:intergenic |
| CTTAATAACAAACTTAATCT+AGG | 0.336122 | 5_1:-6556763 | Msa0713980:CDS |
| TAAGCGAGTTTGGTGTAAAC+TGG | 0.336993 | 5_1:+6557251 | None:intergenic |
| GGAATGTGGGTGTGGGGTTG+TGG | 0.340015 | 5_1:-6556404 | Msa0713980:CDS |
| TTTGGACCCACCTTGTTCTT+GGG | 0.345593 | 5_1:-6556674 | Msa0713980:CDS |
| TGGCTATGGAATGTGGGTGT+GGG | 0.346396 | 5_1:-6556411 | Msa0713980:CDS |
| TTGGCTATGGAATGTGGGTG+TGG | 0.357803 | 5_1:-6556412 | Msa0713980:CDS |
| TTGGTAGCATACCGTTGATT+AGG | 0.360933 | 5_1:+6557206 | None:intergenic |
| CGTCGGTTCCGGATTTGTTT+AGG | 0.361537 | 5_1:-6556525 | Msa0713980:CDS |
| CGGCGCTGAATATTCATATA+TGG | 0.362736 | 5_1:-6557007 | Msa0713980:CDS |
| GGGTCCAAAAGAAACCTATC+TGG | 0.369698 | 5_1:+6556688 | None:intergenic |
| GTTGAAGGTACCGTCGGTTC+CGG | 0.377354 | 5_1:-6556536 | Msa0713980:CDS |
| TTTGTTCTGTGAGCATAAAC+GGG | 0.400112 | 5_1:+6556895 | None:intergenic |
| CCGGGCTTTGCCGTGGTTGA+AGG | 0.401375 | 5_1:-6556551 | Msa0713980:CDS |
| TGAGGTTTGGTATACCTCAT+TGG | 0.402328 | 5_1:-6556354 | Msa0713980:CDS |
| TGGTGCAGGAGAATGGGAAT+AGG | 0.414994 | 5_1:-6557072 | Msa0713980:intron |
| GAACAGCGTCAATGTCATTA+GGG | 0.415763 | 5_1:+6556785 | None:intergenic |
| TGAGTGGCGGACCCTGCAAA+TGG | 0.420570 | 5_1:+6557564 | None:intergenic |
| GGCGCGTCGCGTGTCAAGCG+CGG | 0.428563 | 5_1:-6556601 | Msa0713980:CDS |
| AAGATGGTTAAGGCCCTTTG+TGG | 0.430907 | 5_1:-6556448 | Msa0713980:CDS |
| GCGCGTCGCGTGTCAAGCGC+GGG | 0.431919 | 5_1:-6556600 | Msa0713980:CDS |
| GAGTGGCGGACCCTGCAAAT+GGG | 0.439578 | 5_1:+6557565 | None:intergenic |
| CTCACCTTCTTTCCTCATGC+TGG | 0.441437 | 5_1:-6557545 | Msa0713980:intron |
| GGCTATGGAATGTGGGTGTG+GGG | 0.449265 | 5_1:-6556410 | Msa0713980:CDS |
| GAAATAGTTGGAATGATAAG+AGG | 0.455218 | 5_1:-6557341 | Msa0713980:CDS |
| GGTGCAGGAGAATGGGAATA+GGG | 0.455976 | 5_1:-6557071 | Msa0713980:intron |
| GAAATTGATAAAGAAATAGT+TGG | 0.468243 | 5_1:-6557353 | Msa0713980:CDS |
| TGACGAGAATTGACGGTGTA+CGG | 0.468550 | 5_1:+6556920 | None:intergenic |
| TCATGTGAACCATTGAGGTT+TGG | 0.476876 | 5_1:-6556367 | Msa0713980:CDS |
| TCTCTCTTCACCGACATGCT+TGG | 0.485318 | 5_1:-6557592 | Msa0713980:CDS |
| TACAGTGTCAAAACATGGCC+TGG | 0.491753 | 5_1:-6556712 | Msa0713980:CDS |
| AGATGGTTAAGGCCCTTTGT+GGG | 0.493646 | 5_1:-6556447 | Msa0713980:CDS |
| ATACTTGCAATTATGAGAGT+TGG | 0.495244 | 5_1:-6557718 | None:intergenic |
| CATAATTTGGCTATGGAATG+TGG | 0.501628 | 5_1:-6556418 | Msa0713980:CDS |
| AAGTGTTTGGAATTCTAAAG+AGG | 0.505817 | 5_1:-6556644 | Msa0713980:CDS |
| CCAAAAGGCCTAAACAAATC+CGG | 0.512387 | 5_1:+6556517 | None:intergenic |
| GATTGGACTAAGTCTATGCC+AGG | 0.513880 | 5_1:-6556256 | Msa0713980:CDS |
| AAAGAAGGTGAAGATGGTTA+AGG | 0.518056 | 5_1:-6556458 | Msa0713980:CDS |
| GTGATGGTTCTATCGGTGAT+TGG | 0.518824 | 5_1:-6556273 | Msa0713980:CDS |
| CCTTCAACCACGGCAAAGCC+CGG | 0.518891 | 5_1:+6556551 | None:intergenic |
| TTGCTTCATGTGAACCATTG+AGG | 0.519399 | 5_1:-6556372 | Msa0713980:CDS |
| ATGACTTCTTAAATCTCTCT+AGG | 0.522742 | 5_1:+6556214 | None:intergenic |
| ACGGCGTCAGAAGGAGTTAA+CGG | 0.524819 | 5_1:+6556847 | None:intergenic |
| CTTGTTGATGATTATAGTGA+TGG | 0.527363 | 5_1:-6556289 | Msa0713980:CDS |
| TATACCAGCATGAGGAAAGA+AGG | 0.530072 | 5_1:+6557541 | None:intergenic |
| ACCGACGGTACCTTCAACCA+CGG | 0.534359 | 5_1:+6556541 | None:intergenic |
| AAACATGGCCTGGCCCAGAT+AGG | 0.535009 | 5_1:-6556702 | Msa0713980:CDS |
| TAGAATATAACGGCGTCAGA+AGG | 0.539306 | 5_1:+6556838 | None:intergenic |
| AAAAGAAACCTATCTGGGCC+AGG | 0.540432 | 5_1:+6556694 | None:intergenic |
| GTTTGCGCATAATTTGGCTA+TGG | 0.547310 | 5_1:-6556425 | Msa0713980:CDS |
| GCTTGGTGACCCCATTTGCA+GGG | 0.548286 | 5_1:-6557575 | Msa0713980:CDS |
| GTTGAAAGGACATGTGAAGT+TGG | 0.549405 | 5_1:-6557631 | Msa0713980:CDS |
| AATTATGCGCAAACCCACAA+AGG | 0.552012 | 5_1:+6556434 | None:intergenic |
| AAGAGAGAAAGTTGGTCACT+AGG | 0.553217 | 5_1:+6557607 | None:intergenic |
| AAAGAGTAGAAGCAGTTGAA+AGG | 0.557149 | 5_1:-6557645 | Msa0713980:CDS |
| AGAAGGAGTTAACGGAATGA+TGG | 0.559153 | 5_1:+6556855 | None:intergenic |
| TGAGGTATACCAAACCTCAA+TGG | 0.563011 | 5_1:+6556358 | None:intergenic |
| ACGGGGTTGACGAGAATTGA+CGG | 0.566648 | 5_1:+6556913 | None:intergenic |
| AAAACTCTACGGTAGAGAAA+CGG | 0.566914 | 5_1:+6556809 | None:intergenic |
| GTGTGGGGTTGTGGCTACTG+AGG | 0.570076 | 5_1:-6556395 | Msa0713980:CDS |
| GCCGTGGTTGAAGGTACCGT+CGG | 0.570164 | 5_1:-6556542 | Msa0713980:CDS |
| ATTATGCGCAAACCCACAAA+GGG | 0.571069 | 5_1:+6556435 | None:intergenic |
| ACTGTAGGACCCACTTGGTA+CGG | 0.571473 | 5_1:+6556729 | None:intergenic |
| TTGACACTGTAGGACCCACT+TGG | 0.573131 | 5_1:+6556724 | None:intergenic |
| AGTGGCGGACCCTGCAAATG+GGG | 0.573181 | 5_1:+6557566 | None:intergenic |
| TGAATATTCATATATGGCAA+CGG | 0.574189 | 5_1:-6557001 | Msa0713980:CDS |
| TTCGTGTTTCTCCTAATCAA+CGG | 0.574231 | 5_1:-6557217 | Msa0713980:intron |
| GAGGCATGGTTTAAAGATAA+CGG | 0.582283 | 5_1:-6557027 | Msa0713980:CDS |
| CTACGGTAGAGAAACGGTTA+CGG | 0.585607 | 5_1:+6556815 | None:intergenic |
| GATTATAGTGATGGTTCTAT+CGG | 0.586828 | 5_1:-6556280 | Msa0713980:CDS |
| AGGCCCAAAGAAGGTGAAGA+TGG | 0.590583 | 5_1:-6556464 | Msa0713980:CDS |
| GGTCCAAAAGAAACCTATCT+GGG | 0.592928 | 5_1:+6556689 | None:intergenic |
| TGTCGGTGAAGAGAGAAAGT+TGG | 0.598088 | 5_1:+6557599 | None:intergenic |
| CTCTCGAACAATCACACTAA+CGG | 0.599043 | 5_1:+6557690 | None:intergenic |
| TGTGAATATATACCAGCATG+AGG | 0.601698 | 5_1:+6557533 | None:intergenic |
| ACGGTTACGGTAGAATATAA+CGG | 0.610597 | 5_1:+6556828 | None:intergenic |
| CTTAAAATAGCCCAAGAACA+AGG | 0.618666 | 5_1:+6556664 | None:intergenic |
| ATAATTTGGCTATGGAATGT+GGG | 0.630129 | 5_1:-6556417 | Msa0713980:CDS |
| AAATAGCCCAAGAACAAGGT+GGG | 0.635584 | 5_1:+6556668 | None:intergenic |
| GCATGAGGAAAGAAGGTGAG+TGG | 0.642413 | 5_1:+6557548 | None:intergenic |
| CTAAACAAATCCGGAACCGA+CGG | 0.646252 | 5_1:+6556526 | None:intergenic |
| GGTCCTACAGTGTCAAAACA+TGG | 0.647080 | 5_1:-6556717 | Msa0713980:CDS |
| AATGGGGTCACCAAGCATGT+CGG | 0.667448 | 5_1:+6557582 | None:intergenic |
| AAAATAGCCCAAGAACAAGG+TGG | 0.667856 | 5_1:+6556667 | None:intergenic |
| TGAGGAAAGAAGGTGAGTGG+CGG | 0.676708 | 5_1:+6557551 | None:intergenic |
| TTGTTCTGTGAGCATAAACG+GGG | 0.686756 | 5_1:+6556896 | None:intergenic |
| AAGCGAGTTTGGTGTAAACT+GGG | 0.687492 | 5_1:+6557252 | None:intergenic |
| ATTGGACTAAGTCTATGCCA+GGG | 0.702872 | 5_1:-6556255 | Msa0713980:CDS |
| GTTGATTAGGAGAAACACGA+AGG | 0.743361 | 5_1:+6557219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5_1:6556509-6556528 | None:intergenic | 15.0% |
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5_1:6556509-6556528 | None:intergenic | 15.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5_1:6556575-6556594 | Msa0713980:CDS | 20.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5_1:6557165-6557184 | Msa0713980:intron | 20.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5_1:6556575-6556594 | Msa0713980:CDS | 20.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5_1:6557165-6557184 | Msa0713980:intron | 20.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5_1:6556482-6556501 | Msa0713980:CDS | 25.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5_1:6556535-6556554 | None:intergenic | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5_1:6556537-6556556 | Msa0713980:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5_1:6556744-6556763 | None:intergenic | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5_1:6556927-6556946 | Msa0713980:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5_1:6556956-6556975 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5_1:6556971-6556990 | None:intergenic | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5_1:6557429-6557448 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5_1:6557429-6557448 | Msa0713980:intron | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5_1:6557430-6557449 | Msa0713980:intron | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5_1:6557604-6557623 | Msa0713980:CDS | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5_1:6556482-6556501 | Msa0713980:CDS | 25.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5_1:6556535-6556554 | None:intergenic | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5_1:6556537-6556556 | Msa0713980:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5_1:6556744-6556763 | None:intergenic | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5_1:6556927-6556946 | Msa0713980:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5_1:6556956-6556975 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5_1:6556971-6556990 | None:intergenic | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5_1:6557429-6557448 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5_1:6557429-6557448 | Msa0713980:intron | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5_1:6557430-6557449 | Msa0713980:intron | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5_1:6557604-6557623 | Msa0713980:CDS | 25.0% |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5_1:6556587-6556606 | Msa0713980:CDS | 30.0% | |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5_1:6556836-6556855 | Msa0713980:CDS | 30.0% |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5_1:6556879-6556898 | Msa0713980:CDS | 30.0% | |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5_1:6556973-6556992 | Msa0713980:CDS | 30.0% | |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5_1:6557037-6557056 | None:intergenic | 30.0% |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5_1:6557284-6557303 | Msa0713980:CDS | 30.0% |
| ! | TGCTAAAATGACACGTATTT+TGG | - | chr5_1:6557353-6557372 | Msa0713980:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5_1:6557435-6557454 | Msa0713980:intron | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5_1:6557436-6557455 | Msa0713980:intron | 30.0% |
| ATAATTTGGCTATGGAATGT+GGG | - | chr5_1:6557511-6557530 | Msa0713980:intron | 30.0% | |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5_1:6557639-6557658 | Msa0713980:CDS | 30.0% |
| ! | GATTATAGTGATGGTTCTAT+CGG | - | chr5_1:6557648-6557667 | Msa0713980:CDS | 30.0% |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5_1:6556587-6556606 | Msa0713980:CDS | 30.0% | |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5_1:6556836-6556855 | Msa0713980:CDS | 30.0% |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5_1:6556879-6556898 | Msa0713980:CDS | 30.0% | |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5_1:6556973-6556992 | Msa0713980:CDS | 30.0% | |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5_1:6557037-6557056 | None:intergenic | 30.0% |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5_1:6557284-6557303 | Msa0713980:CDS | 30.0% |
| ! | TGCTAAAATGACACGTATTT+TGG | - | chr5_1:6557353-6557372 | Msa0713980:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5_1:6557435-6557454 | Msa0713980:intron | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5_1:6557436-6557455 | Msa0713980:intron | 30.0% |
| ATAATTTGGCTATGGAATGT+GGG | - | chr5_1:6557511-6557530 | Msa0713980:intron | 30.0% | |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5_1:6557639-6557658 | Msa0713980:CDS | 30.0% |
| ! | GATTATAGTGATGGTTCTAT+CGG | - | chr5_1:6557648-6557667 | Msa0713980:CDS | 30.0% |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5_1:6556283-6556302 | Msa0713980:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5_1:6556398-6556417 | None:intergenic | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5_1:6556547-6556566 | Msa0713980:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5_1:6556611-6556630 | Msa0713980:CDS | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5_1:6556686-6556705 | Msa0713980:CDS | 35.0% |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5_1:6556711-6556730 | Msa0713980:CDS | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5_1:6556882-6556901 | Msa0713980:CDS | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5_1:6556887-6556906 | Msa0713980:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5_1:6556901-6556920 | Msa0713980:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5_1:6557036-6557055 | None:intergenic | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5_1:6557103-6557122 | None:intergenic | 35.0% | |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5_1:6557122-6557141 | None:intergenic | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5_1:6557133-6557152 | None:intergenic | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5_1:6557267-6557286 | None:intergenic | 35.0% | |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5_1:6557271-6557290 | Msa0713980:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5_1:6557299-6557318 | Msa0713980:CDS | 35.0% |
| !! | AAATGACACGTATTTTGGAC+CGG | - | chr5_1:6557358-6557377 | Msa0713980:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5_1:6557437-6557456 | Msa0713980:intron | 35.0% |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5_1:6557470-6557489 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5_1:6557471-6557490 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5_1:6557470-6557489 | Msa0713980:intron | 35.0% | |
| CATAATTTGGCTATGGAATG+TGG | - | chr5_1:6557510-6557529 | Msa0713980:intron | 35.0% | |
| ! | CAAGATAGCATTTTCCAATG+AGG | + | chr5_1:6557591-6557610 | None:intergenic | 35.0% |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5_1:6556283-6556302 | Msa0713980:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5_1:6556398-6556417 | None:intergenic | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5_1:6556547-6556566 | Msa0713980:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5_1:6556611-6556630 | Msa0713980:CDS | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5_1:6556686-6556705 | Msa0713980:CDS | 35.0% |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5_1:6556711-6556730 | Msa0713980:CDS | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5_1:6556882-6556901 | Msa0713980:CDS | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5_1:6556887-6556906 | Msa0713980:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5_1:6556901-6556920 | Msa0713980:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5_1:6557036-6557055 | None:intergenic | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5_1:6557103-6557122 | None:intergenic | 35.0% | |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5_1:6557122-6557141 | None:intergenic | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5_1:6557133-6557152 | None:intergenic | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5_1:6557267-6557286 | None:intergenic | 35.0% | |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5_1:6557271-6557290 | Msa0713980:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5_1:6557299-6557318 | Msa0713980:CDS | 35.0% |
| !! | AAATGACACGTATTTTGGAC+CGG | - | chr5_1:6557358-6557377 | Msa0713980:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5_1:6557437-6557456 | Msa0713980:intron | 35.0% |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5_1:6557470-6557489 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5_1:6557471-6557490 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5_1:6557470-6557489 | Msa0713980:intron | 35.0% | |
| CATAATTTGGCTATGGAATG+TGG | - | chr5_1:6557510-6557529 | Msa0713980:intron | 35.0% | |
| ! | CAAGATAGCATTTTCCAATG+AGG | + | chr5_1:6557591-6557610 | None:intergenic | 35.0% |
| CTCTCGAACAATCACACTAA+CGG | + | chr5_1:6556241-6556260 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5_1:6556297-6556316 | Msa0713980:CDS | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5_1:6556324-6556343 | None:intergenic | 40.0% |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5_1:6556390-6556409 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5_1:6556550-6556569 | Msa0713980:CDS | 40.0% | |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5_1:6556679-6556698 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5_1:6556680-6556699 | None:intergenic | 40.0% |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5_1:6556690-6556709 | None:intergenic | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5_1:6556712-6556731 | None:intergenic | 40.0% | |
| ! | TTGGTAGCATACCGTTGATT+AGG | + | chr5_1:6556725-6556744 | None:intergenic | 40.0% |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5_1:6556842-6556861 | Msa0713980:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5_1:6556849-6556868 | Msa0713980:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5_1:6556850-6556869 | Msa0713980:CDS | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5_1:6556921-6556940 | Msa0713980:CDS | 40.0% |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5_1:6557035-6557054 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5_1:6557076-6557095 | None:intergenic | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5_1:6557093-6557112 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5_1:6557146-6557165 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5_1:6557147-6557166 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5_1:6557242-6557261 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5_1:6557263-6557282 | None:intergenic | 40.0% | |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5_1:6557264-6557283 | None:intergenic | 40.0% | |
| !! | AATGACACGTATTTTGGACC+GGG | - | chr5_1:6557359-6557378 | Msa0713980:CDS | 40.0% |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5_1:6557414-6557433 | None:intergenic | 40.0% | |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5_1:6557412-6557431 | Msa0713980:intron | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5_1:6557438-6557457 | Msa0713980:intron | 40.0% |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5_1:6557496-6557515 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5_1:6557497-6557516 | None:intergenic | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5_1:6557497-6557516 | Msa0713980:intron | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5_1:6557503-6557522 | Msa0713980:intron | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5_1:6557556-6557575 | Msa0713980:CDS | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5_1:6557561-6557580 | Msa0713980:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5_1:6557573-6557592 | None:intergenic | 40.0% | |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5_1:6557574-6557593 | Msa0713980:CDS | 40.0% |
| ATTGGACTAAGTCTATGCCA+GGG | - | chr5_1:6557673-6557692 | Msa0713980:CDS | 40.0% | |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5_1:6557703-6557722 | None:intergenic | 40.0% |
| CTCTCGAACAATCACACTAA+CGG | + | chr5_1:6556241-6556260 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5_1:6556297-6556316 | Msa0713980:CDS | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5_1:6556324-6556343 | None:intergenic | 40.0% |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5_1:6556390-6556409 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5_1:6556550-6556569 | Msa0713980:CDS | 40.0% | |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5_1:6556679-6556698 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5_1:6556680-6556699 | None:intergenic | 40.0% |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5_1:6556690-6556709 | None:intergenic | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5_1:6556712-6556731 | None:intergenic | 40.0% | |
| ! | TTGGTAGCATACCGTTGATT+AGG | + | chr5_1:6556725-6556744 | None:intergenic | 40.0% |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5_1:6556842-6556861 | Msa0713980:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5_1:6556849-6556868 | Msa0713980:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5_1:6556850-6556869 | Msa0713980:CDS | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5_1:6556921-6556940 | Msa0713980:CDS | 40.0% |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5_1:6557035-6557054 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5_1:6557076-6557095 | None:intergenic | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5_1:6557093-6557112 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5_1:6557146-6557165 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5_1:6557147-6557166 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5_1:6557242-6557261 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5_1:6557263-6557282 | None:intergenic | 40.0% | |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5_1:6557264-6557283 | None:intergenic | 40.0% | |
| !! | AATGACACGTATTTTGGACC+GGG | - | chr5_1:6557359-6557378 | Msa0713980:CDS | 40.0% |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5_1:6557414-6557433 | None:intergenic | 40.0% | |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5_1:6557412-6557431 | Msa0713980:intron | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5_1:6557438-6557457 | Msa0713980:intron | 40.0% |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5_1:6557496-6557515 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5_1:6557497-6557516 | None:intergenic | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5_1:6557497-6557516 | Msa0713980:intron | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5_1:6557503-6557522 | Msa0713980:intron | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5_1:6557556-6557575 | Msa0713980:CDS | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5_1:6557561-6557580 | Msa0713980:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5_1:6557573-6557592 | None:intergenic | 40.0% | |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5_1:6557574-6557593 | Msa0713980:CDS | 40.0% |
| ATTGGACTAAGTCTATGCCA+GGG | - | chr5_1:6557673-6557692 | Msa0713980:CDS | 40.0% | |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5_1:6557703-6557722 | None:intergenic | 40.0% |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5_1:6556332-6556351 | None:intergenic | 45.0% | |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5_1:6557011-6557030 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5_1:6557116-6557135 | None:intergenic | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5_1:6557189-6557208 | Msa0713980:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5_1:6557190-6557209 | Msa0713980:intron | 45.0% |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5_1:6557211-6557230 | Msa0713980:intron | 45.0% | |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5_1:6557217-6557236 | None:intergenic | 45.0% |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5_1:6557216-6557235 | Msa0713980:intron | 45.0% | |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5_1:6557237-6557256 | None:intergenic | 45.0% | |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5_1:6557236-6557255 | Msa0713980:CDS | 45.0% |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5_1:6557243-6557262 | None:intergenic | 45.0% | |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5_1:6557253-6557272 | Msa0713980:CDS | 45.0% |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5_1:6557254-6557273 | Msa0713980:CDS | 45.0% | |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5_1:6557306-6557325 | Msa0713980:CDS | 45.0% |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5_1:6557405-6557424 | None:intergenic | 45.0% | |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5_1:6557411-6557430 | Msa0713980:intron | 45.0% |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5_1:6557480-6557499 | Msa0713980:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5_1:6557481-6557500 | Msa0713980:intron | 45.0% | |
| ! | GTGATGGTTCTATCGGTGAT+TGG | - | chr5_1:6557655-6557674 | Msa0713980:CDS | 45.0% |
| GATTGGACTAAGTCTATGCC+AGG | - | chr5_1:6557672-6557691 | Msa0713980:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5_1:6557693-6557712 | None:intergenic | 45.0% | |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5_1:6556332-6556351 | None:intergenic | 45.0% | |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5_1:6557011-6557030 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5_1:6557116-6557135 | None:intergenic | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5_1:6557189-6557208 | Msa0713980:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5_1:6557190-6557209 | Msa0713980:intron | 45.0% |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5_1:6557211-6557230 | Msa0713980:intron | 45.0% | |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5_1:6557217-6557236 | None:intergenic | 45.0% |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5_1:6557216-6557235 | Msa0713980:intron | 45.0% | |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5_1:6557237-6557256 | None:intergenic | 45.0% | |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5_1:6557236-6557255 | Msa0713980:CDS | 45.0% |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5_1:6557243-6557262 | None:intergenic | 45.0% | |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5_1:6557253-6557272 | Msa0713980:CDS | 45.0% |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5_1:6557254-6557273 | Msa0713980:CDS | 45.0% | |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5_1:6557306-6557325 | Msa0713980:CDS | 45.0% |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5_1:6557405-6557424 | None:intergenic | 45.0% | |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5_1:6557411-6557430 | Msa0713980:intron | 45.0% |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5_1:6557480-6557499 | Msa0713980:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5_1:6557481-6557500 | Msa0713980:intron | 45.0% | |
| ! | GTGATGGTTCTATCGGTGAT+TGG | - | chr5_1:6557655-6557674 | Msa0713980:CDS | 45.0% |
| GATTGGACTAAGTCTATGCC+AGG | - | chr5_1:6557672-6557691 | Msa0713980:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5_1:6557693-6557712 | None:intergenic | 45.0% | |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5_1:6556336-6556355 | Msa0713980:CDS | 50.0% | |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5_1:6556349-6556368 | None:intergenic | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5_1:6556380-6556399 | None:intergenic | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5_1:6556383-6556402 | None:intergenic | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5_1:6556383-6556402 | Msa0713980:CDS | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5_1:6556856-6556875 | Msa0713980:CDS | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5_1:6556857-6556876 | Msa0713980:CDS | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5_1:6557018-6557037 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5_1:6557084-6557103 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5_1:6557202-6557221 | None:intergenic | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5_1:6557207-6557226 | None:intergenic | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5_1:6557403-6557422 | Msa0713980:intron | 50.0% |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5_1:6557464-6557483 | Msa0713980:intron | 50.0% | |
| TTGGCTATGGAATGTGGGTG+TGG | - | chr5_1:6557516-6557535 | Msa0713980:intron | 50.0% | |
| TGGCTATGGAATGTGGGTGT+GGG | - | chr5_1:6557517-6557536 | Msa0713980:intron | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5_1:6557689-6557708 | Msa0713980:CDS | 50.0% |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5_1:6556336-6556355 | Msa0713980:CDS | 50.0% | |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5_1:6556349-6556368 | None:intergenic | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5_1:6556380-6556399 | None:intergenic | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5_1:6556383-6556402 | None:intergenic | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5_1:6556383-6556402 | Msa0713980:CDS | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5_1:6556856-6556875 | Msa0713980:CDS | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5_1:6556857-6556876 | Msa0713980:CDS | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5_1:6557018-6557037 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5_1:6557084-6557103 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5_1:6557202-6557221 | None:intergenic | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5_1:6557207-6557226 | None:intergenic | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5_1:6557403-6557422 | Msa0713980:intron | 50.0% |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5_1:6557464-6557483 | Msa0713980:intron | 50.0% | |
| TTGGCTATGGAATGTGGGTG+TGG | - | chr5_1:6557516-6557535 | Msa0713980:intron | 50.0% | |
| TGGCTATGGAATGTGGGTGT+GGG | - | chr5_1:6557517-6557536 | Msa0713980:intron | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5_1:6557689-6557708 | Msa0713980:CDS | 50.0% |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5_1:6556352-6556371 | Msa0713980:CDS | 55.0% |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5_1:6556353-6556372 | Msa0713980:CDS | 55.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5_1:6557226-6557245 | Msa0713980:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5_1:6557390-6557409 | None:intergenic | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5_1:6557392-6557411 | Msa0713980:intron | 55.0% |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5_1:6557444-6557463 | Msa0713980:intron | 55.0% | |
| GGCTATGGAATGTGGGTGTG+GGG | - | chr5_1:6557518-6557537 | Msa0713980:intron | 55.0% | |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5_1:6556352-6556371 | Msa0713980:CDS | 55.0% |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5_1:6556353-6556372 | Msa0713980:CDS | 55.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5_1:6557226-6557245 | Msa0713980:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5_1:6557390-6557409 | None:intergenic | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5_1:6557392-6557411 | Msa0713980:intron | 55.0% |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5_1:6557444-6557463 | Msa0713980:intron | 55.0% | |
| GGCTATGGAATGTGGGTGTG+GGG | - | chr5_1:6557518-6557537 | Msa0713980:intron | 55.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5_1:6556365-6556384 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5_1:6556366-6556385 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5_1:6556367-6556386 | None:intergenic | 60.0% |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5_1:6557370-6557389 | Msa0713980:intron | 60.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5_1:6557380-6557399 | None:intergenic | 60.0% | |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5_1:6557386-6557405 | Msa0713980:intron | 60.0% |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5_1:6557455-6557474 | Msa0713980:intron | 60.0% | |
| GGAATGTGGGTGTGGGGTTG+TGG | - | chr5_1:6557524-6557543 | Msa0713980:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5_1:6557533-6557552 | Msa0713980:intron | 60.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5_1:6556365-6556384 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5_1:6556366-6556385 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5_1:6556367-6556386 | None:intergenic | 60.0% |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5_1:6557370-6557389 | Msa0713980:intron | 60.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5_1:6557380-6557399 | None:intergenic | 60.0% | |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5_1:6557386-6557405 | Msa0713980:intron | 60.0% |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5_1:6557455-6557474 | Msa0713980:intron | 60.0% | |
| GGAATGTGGGTGTGGGGTTG+TGG | - | chr5_1:6557524-6557543 | Msa0713980:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5_1:6557533-6557552 | Msa0713980:intron | 60.0% | |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5_1:6557377-6557396 | Msa0713980:intron | 65.0% | |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5_1:6557377-6557396 | Msa0713980:intron | 65.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5_1:6557327-6557346 | Msa0713980:CDS | 75.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5_1:6557328-6557347 | Msa0713980:CDS | 75.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5_1:6557327-6557346 | Msa0713980:CDS | 75.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5_1:6557328-6557347 | Msa0713980:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 6556222 | 6557728 | 6556222 | ID=Msa0713980;Name=Msa0713980 |
| chr5_1 | mRNA | 6556222 | 6557728 | 6556222 | ID=Msa0713980-mRNA-1;Parent=Msa0713980;Name=Msa0713980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|403 |
| chr5_1 | exon | 6557546 | 6557728 | 6557546 | ID=Msa0713980-mRNA-1:exon:2735;Parent=Msa0713980-mRNA-1 |
| chr5_1 | exon | 6557218 | 6557381 | 6557218 | ID=Msa0713980-mRNA-1:exon:2734;Parent=Msa0713980-mRNA-1 |
| chr5_1 | exon | 6556222 | 6557086 | 6556222 | ID=Msa0713980-mRNA-1:exon:2733;Parent=Msa0713980-mRNA-1 |
| chr5_1 | CDS | 6557546 | 6557728 | 6557546 | ID=Msa0713980-mRNA-1:cds;Parent=Msa0713980-mRNA-1 |
| chr5_1 | CDS | 6557218 | 6557381 | 6557218 | ID=Msa0713980-mRNA-1:cds;Parent=Msa0713980-mRNA-1 |
| chr5_1 | CDS | 6556222 | 6557086 | 6556222 | ID=Msa0713980-mRNA-1:cds;Parent=Msa0713980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
