Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835390 | XP_003611609.2 | 96.278 | 403 | 15 | 0 | 1 | 403 | 1 | 403 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835390 | sp|O64815|HLS1L_ARATH | 68.357 | 414 | 113 | 4 | 6 | 403 | 2 | 413 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835390 | G7K3U7 | 96.278 | 403 | 15 | 0 | 1 | 403 | 1 | 403 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0835390 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713980 | Msa0835390 | 0.806476 | 8.074440e-50 | -8.615850e-47 |
| Msa0756200 | Msa0835390 | 0.909390 | 6.005608e-82 | -8.615850e-47 |
| Msa0756230 | Msa0835390 | 0.948003 | 2.227571e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835390 | MtrunA17_Chr5g0401351 | 96.278 | 403 | 15 | 0 | 1 | 403 | 1 | 403 | 0.0 | 805 |
| Msa0835390 | MtrunA17_Chr4g0053961 | 71.149 | 409 | 108 | 4 | 5 | 403 | 3 | 411 | 0.0 | 606 |
| Msa0835390 | MtrunA17_Chr4g0001411 | 47.573 | 412 | 187 | 8 | 2 | 403 | 17 | 409 | 1.93e-125 | 368 |
| Msa0835390 | MtrunA17_Chr3g0105631 | 47.619 | 399 | 185 | 7 | 11 | 403 | 8 | 388 | 8.75e-120 | 353 |
| Msa0835390 | MtrunA17_Chr4g0068331 | 34.793 | 411 | 236 | 12 | 9 | 402 | 11 | 406 | 4.28e-61 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835390 | AT2G23060.1 | 68.357 | 414 | 113 | 4 | 6 | 403 | 2 | 413 | 0.0 | 568 |
| Msa0835390 | AT4G37580.1 | 67.332 | 401 | 124 | 3 | 10 | 403 | 3 | 403 | 0.0 | 544 |
| Msa0835390 | AT5G67430.1 | 60.253 | 395 | 141 | 6 | 9 | 403 | 8 | 386 | 2.48e-167 | 474 |
| Msa0835390 | AT4G37580.2 | 68.035 | 341 | 105 | 2 | 67 | 403 | 6 | 346 | 9.09e-166 | 468 |
| Msa0835390 | AT2G23060.2 | 70.251 | 279 | 80 | 1 | 128 | 403 | 1 | 279 | 6.00e-144 | 410 |
| Msa0835390 | AT5G67430.2 | 61.446 | 332 | 117 | 5 | 72 | 403 | 1 | 321 | 4.63e-142 | 407 |
| Msa0835390 | AT2G30090.1 | 41.791 | 402 | 195 | 7 | 11 | 403 | 15 | 386 | 2.62e-95 | 291 |
Find 97 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAACGACACGTATTT+TGG | 0.139903 | 5_4:-8721498 | Msa0835390:CDS |
| TTAACCATCTTCACCTTCTT+TGG | 0.150962 | 5_4:+8721383 | None:intergenic |
| TATCTTGTGCTAATGATTTA+TGG | 0.162688 | 5_4:-8721247 | Msa0835390:CDS |
| CCGGATTTGTTTAGGCCTTT+TGG | 0.177590 | 5_4:-8721440 | Msa0835390:CDS |
| TGGCCCAGATAGGTTTCTTT+TGG | 0.229875 | 5_4:-8721615 | Msa0835390:CDS |
| TTGTGGGTTTGCGCATAATT+TGG | 0.260941 | 5_4:-8721354 | Msa0835390:CDS |
| TGCTTGGTGACCCCATTTGC+AGG | 0.320702 | 5_4:-8722499 | Msa0835390:CDS |
| TAACCATCTTCACCTTCTTT+GGG | 0.322009 | 5_4:+8721384 | None:intergenic |
| GCCTAAAATGTAAGCGAGTT+TGG | 0.325207 | 5_4:+8722164 | None:intergenic |
| AGAACAGCGTCAATGTCATT+AGG | 0.331188 | 5_4:+8721707 | None:intergenic |
| CTTAATAACAAACTTAATCT+AGG | 0.336122 | 5_4:-8721686 | Msa0835390:CDS |
| TAAGCGAGTTTGGTGTAAAC+TGG | 0.336993 | 5_4:+8722174 | None:intergenic |
| TTTGGACCCACCTTGTTCTT+GGG | 0.345593 | 5_4:-8721597 | Msa0835390:CDS |
| CGTCGGTTCCGGATTTGTTT+AGG | 0.361537 | 5_4:-8721448 | Msa0835390:CDS |
| CGGCGCTGAATATTCATATA+TGG | 0.362736 | 5_4:-8721930 | Msa0835390:CDS |
| TTGGTAGCGTACCGTTGATT+AGG | 0.367983 | 5_4:+8722129 | None:intergenic |
| GGGTCCAAAAGAAACCTATC+TGG | 0.369698 | 5_4:+8721611 | None:intergenic |
| GTTGAAGGTACCGTCGGTTC+CGG | 0.377354 | 5_4:-8721459 | Msa0835390:CDS |
| ATGATTTATGGTGTATTAAG+AGG | 0.386924 | 5_4:-8721235 | Msa0835390:CDS |
| TTTGTTCTGTGAGCATAAAC+GGG | 0.400112 | 5_4:+8721818 | None:intergenic |
| CCGGGCTTTGCCGTGGTTGA+AGG | 0.401375 | 5_4:-8721474 | Msa0835390:CDS |
| TGAGGTTTGGTATACCTCAT+TGG | 0.402328 | 5_4:-8721277 | Msa0835390:CDS |
| TGGTGCAGGAGAATGGGAAT+AGG | 0.414994 | 5_4:-8721995 | Msa0835390:intron |
| GAACAGCGTCAATGTCATTA+GGG | 0.415763 | 5_4:+8721708 | None:intergenic |
| TGAGTGGCGGACCCTGCAAA+TGG | 0.420570 | 5_4:+8722487 | None:intergenic |
| GGCGCGTCGCGTGTCAAGCG+CGG | 0.428563 | 5_4:-8721524 | Msa0835390:CDS |
| AAGATGGTTAAGGCCCTTTG+TGG | 0.430907 | 5_4:-8721371 | Msa0835390:CDS |
| GCGCGTCGCGTGTCAAGCGC+GGG | 0.431919 | 5_4:-8721523 | Msa0835390:CDS |
| GAGTGGCGGACCCTGCAAAT+GGG | 0.439578 | 5_4:+8722488 | None:intergenic |
| CTCACCTTCTTTCCTCATGC+TGG | 0.441437 | 5_4:-8722468 | Msa0835390:intron |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.447246 | 5_4:-8721196 | Msa0835390:CDS |
| GAAATAGTTGGAATGATAAG+AGG | 0.455218 | 5_4:-8722264 | Msa0835390:CDS |
| GGTGCAGGAGAATGGGAATA+GGG | 0.455976 | 5_4:-8721994 | Msa0835390:intron |
| GGAATGTGAGTGTGGGGTTG+TGG | 0.464310 | 5_4:-8721327 | Msa0835390:CDS |
| GAAATTGATAAAGAAATAGT+TGG | 0.468243 | 5_4:-8722276 | Msa0835390:CDS |
| TGACGAGAATTGACGGTGTA+CGG | 0.468550 | 5_4:+8721843 | None:intergenic |
| TCATGTGAACCATTGAGGTT+TGG | 0.476876 | 5_4:-8721290 | Msa0835390:CDS |
| TCTCTCTTCACCGACATGCT+TGG | 0.485318 | 5_4:-8722515 | Msa0835390:CDS |
| TACAGTGTCAAAACATGGCC+TGG | 0.491753 | 5_4:-8721635 | Msa0835390:CDS |
| AGATGGTTAAGGCCCTTTGT+GGG | 0.493646 | 5_4:-8721370 | Msa0835390:CDS |
| AAGTGTTTGGAATTCTAAAG+AGG | 0.505817 | 5_4:-8721567 | Msa0835390:CDS |
| CTTGTTGATGATTATAGTGA+TGG | 0.506465 | 5_4:-8721212 | Msa0835390:CDS |
| GATTGGACCAAGTCTATGCC+AGG | 0.509333 | 5_4:-8721179 | Msa0835390:CDS |
| CCAAAAGGCCTAAACAAATC+CGG | 0.512387 | 5_4:+8721440 | None:intergenic |
| AAAGAAGGTGAAGATGGTTA+AGG | 0.518056 | 5_4:-8721381 | Msa0835390:CDS |
| CCTTCAACCACGGCAAAGCC+CGG | 0.518891 | 5_4:+8721474 | None:intergenic |
| ACAACTTCTTAAATCTCTCT+AGG | 0.519282 | 5_4:+8721137 | None:intergenic |
| TTGCTTCATGTGAACCATTG+AGG | 0.519399 | 5_4:-8721295 | Msa0835390:CDS |
| GATTATAGTGATGGTTCTGT+TGG | 0.524315 | 5_4:-8721203 | Msa0835390:CDS |
| ACGGCGTCAGAAGGAGTTAA+CGG | 0.524819 | 5_4:+8721770 | None:intergenic |
| TGGCTATGGAATGTGAGTGT+GGG | 0.525986 | 5_4:-8721334 | Msa0835390:CDS |
| TATACCAGCATGAGGAAAGA+AGG | 0.530072 | 5_4:+8722464 | None:intergenic |
| ACCGACGGTACCTTCAACCA+CGG | 0.534359 | 5_4:+8721464 | None:intergenic |
| AAACATGGCCTGGCCCAGAT+AGG | 0.535009 | 5_4:-8721625 | Msa0835390:CDS |
| TAGAATATAACGGCGTCAGA+AGG | 0.539306 | 5_4:+8721761 | None:intergenic |
| AAAAGAAACCTATCTGGGCC+AGG | 0.540432 | 5_4:+8721617 | None:intergenic |
| GTTTGCGCATAATTTGGCTA+TGG | 0.547310 | 5_4:-8721348 | Msa0835390:CDS |
| GCTTGGTGACCCCATTTGCA+GGG | 0.548286 | 5_4:-8722498 | Msa0835390:CDS |
| GTTGAAAGGACATGTGAAGT+TGG | 0.549405 | 5_4:-8722554 | Msa0835390:CDS |
| AATTATGCGCAAACCCACAA+AGG | 0.552012 | 5_4:+8721357 | None:intergenic |
| AAGAGAGAAAGTTGGTCACT+AGG | 0.553217 | 5_4:+8722530 | None:intergenic |
| TTGGCTATGGAATGTGAGTG+TGG | 0.555852 | 5_4:-8721335 | Msa0835390:CDS |
| AAAGAGTAGAAGCAGTTGAA+AGG | 0.557149 | 5_4:-8722568 | Msa0835390:CDS |
| AGAAGGAGTTAACGGAATGA+TGG | 0.559153 | 5_4:+8721778 | None:intergenic |
| GGAGATCCCTGGCATAGACT+TGG | 0.559706 | 5_4:+8721172 | None:intergenic |
| TGAGGTATACCAAACCTCAA+TGG | 0.563011 | 5_4:+8721281 | None:intergenic |
| GGCTATGGAATGTGAGTGTG+GGG | 0.564473 | 5_4:-8721333 | Msa0835390:CDS |
| ACGGGGTTGACGAGAATTGA+CGG | 0.566648 | 5_4:+8721836 | None:intergenic |
| AAAACTCTACGGTAGAGAAA+CGG | 0.566914 | 5_4:+8721732 | None:intergenic |
| GCCGTGGTTGAAGGTACCGT+CGG | 0.570164 | 5_4:-8721465 | Msa0835390:CDS |
| ATTATGCGCAAACCCACAAA+GGG | 0.571069 | 5_4:+8721358 | None:intergenic |
| ACTGTAGGACCCACTTGGTA+CGG | 0.571473 | 5_4:+8721652 | None:intergenic |
| TTGACACTGTAGGACCCACT+TGG | 0.573131 | 5_4:+8721647 | None:intergenic |
| AGTGGCGGACCCTGCAAATG+GGG | 0.573181 | 5_4:+8722489 | None:intergenic |
| TGAATATTCATATATGGCAA+CGG | 0.574189 | 5_4:-8721924 | Msa0835390:CDS |
| TTCGTGTTTCTCCTAATCAA+CGG | 0.578954 | 5_4:-8722140 | Msa0835390:intron |
| GAGGCATGGTTTAAAGATAA+CGG | 0.582283 | 5_4:-8721950 | Msa0835390:CDS |
| CTACGGTAGAGAAACGGTTA+CGG | 0.585607 | 5_4:+8721738 | None:intergenic |
| AGGCCCAAAGAAGGTGAAGA+TGG | 0.590583 | 5_4:-8721387 | Msa0835390:CDS |
| GGTCCAAAAGAAACCTATCT+GGG | 0.592928 | 5_4:+8721612 | None:intergenic |
| TGTCGGTGAAGAGAGAAAGT+TGG | 0.598088 | 5_4:+8722522 | None:intergenic |
| CTCTCGAACAATCACACTAA+CGG | 0.599043 | 5_4:+8722613 | None:intergenic |
| TGTGAATATATACCAGCATG+AGG | 0.601698 | 5_4:+8722456 | None:intergenic |
| ACGGTTACGGTAGAATATAA+CGG | 0.610597 | 5_4:+8721751 | None:intergenic |
| CTTAAAATAGCCCAAGAACA+AGG | 0.618666 | 5_4:+8721587 | None:intergenic |
| AAATAGCCCAAGAACAAGGT+GGG | 0.635584 | 5_4:+8721591 | None:intergenic |
| GCATGAGGAAAGAAGGTGAG+TGG | 0.642413 | 5_4:+8722471 | None:intergenic |
| CTAAACAAATCCGGAACCGA+CGG | 0.646252 | 5_4:+8721449 | None:intergenic |
| GGTCCTACAGTGTCAAAACA+TGG | 0.647080 | 5_4:-8721640 | Msa0835390:CDS |
| GTGTGGGGTTGTGGCTACTG+AGG | 0.648130 | 5_4:-8721318 | Msa0835390:CDS |
| AATGGGGTCACCAAGCATGT+CGG | 0.667448 | 5_4:+8722505 | None:intergenic |
| AAAATAGCCCAAGAACAAGG+TGG | 0.667856 | 5_4:+8721590 | None:intergenic |
| TGAGGAAAGAAGGTGAGTGG+CGG | 0.676708 | 5_4:+8722474 | None:intergenic |
| ATTGGACCAAGTCTATGCCA+GGG | 0.683595 | 5_4:-8721178 | Msa0835390:CDS |
| TTGTTCTGTGAGCATAAACG+GGG | 0.686756 | 5_4:+8721819 | None:intergenic |
| AAGCGAGTTTGGTGTAAACT+GGG | 0.687492 | 5_4:+8722175 | None:intergenic |
| GTTGATTAGGAGAAACACGA+AGG | 0.743361 | 5_4:+8722142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5_4:8721432-8721451 | None:intergenic | 15.0% |
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5_4:8721432-8721451 | None:intergenic | 15.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5_4:8721498-8721517 | Msa0835390:CDS | 20.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5_4:8722088-8722107 | Msa0835390:intron | 20.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5_4:8721498-8721517 | Msa0835390:CDS | 20.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5_4:8722088-8722107 | Msa0835390:intron | 20.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5_4:8721405-8721424 | Msa0835390:CDS | 25.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5_4:8721458-8721477 | None:intergenic | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5_4:8721460-8721479 | Msa0835390:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5_4:8721667-8721686 | None:intergenic | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5_4:8721850-8721869 | Msa0835390:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5_4:8721879-8721898 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5_4:8721894-8721913 | None:intergenic | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5_4:8722352-8722371 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5_4:8722352-8722371 | Msa0835390:intron | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5_4:8722353-8722372 | Msa0835390:intron | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5_4:8722527-8722546 | Msa0835390:CDS | 25.0% |
| ! | ATGATTTATGGTGTATTAAG+AGG | - | chr5_4:8722539-8722558 | Msa0835390:CDS | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5_4:8721405-8721424 | Msa0835390:CDS | 25.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5_4:8721458-8721477 | None:intergenic | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5_4:8721460-8721479 | Msa0835390:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5_4:8721667-8721686 | None:intergenic | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5_4:8721850-8721869 | Msa0835390:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5_4:8721879-8721898 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5_4:8721894-8721913 | None:intergenic | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5_4:8722352-8722371 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5_4:8722352-8722371 | Msa0835390:intron | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5_4:8722353-8722372 | Msa0835390:intron | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5_4:8722527-8722546 | Msa0835390:CDS | 25.0% |
| ! | ATGATTTATGGTGTATTAAG+AGG | - | chr5_4:8722539-8722558 | Msa0835390:CDS | 25.0% |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5_4:8721510-8721529 | Msa0835390:CDS | 30.0% | |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5_4:8721759-8721778 | Msa0835390:CDS | 30.0% |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5_4:8721802-8721821 | Msa0835390:CDS | 30.0% | |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5_4:8721896-8721915 | Msa0835390:CDS | 30.0% | |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5_4:8721960-8721979 | None:intergenic | 30.0% |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5_4:8722207-8722226 | Msa0835390:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5_4:8722358-8722377 | Msa0835390:intron | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5_4:8722359-8722378 | Msa0835390:intron | 30.0% |
| ! | CAAGATAACATTTTCCAATG+AGG | + | chr5_4:8722514-8722533 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5_4:8722562-8722581 | Msa0835390:CDS | 30.0% |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5_4:8721510-8721529 | Msa0835390:CDS | 30.0% | |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5_4:8721759-8721778 | Msa0835390:CDS | 30.0% |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5_4:8721802-8721821 | Msa0835390:CDS | 30.0% | |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5_4:8721896-8721915 | Msa0835390:CDS | 30.0% | |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5_4:8721960-8721979 | None:intergenic | 30.0% |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5_4:8722207-8722226 | Msa0835390:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5_4:8722358-8722377 | Msa0835390:intron | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5_4:8722359-8722378 | Msa0835390:intron | 30.0% |
| ! | CAAGATAACATTTTCCAATG+AGG | + | chr5_4:8722514-8722533 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5_4:8722562-8722581 | Msa0835390:CDS | 30.0% |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5_4:8721206-8721225 | Msa0835390:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5_4:8721321-8721340 | None:intergenic | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5_4:8721470-8721489 | Msa0835390:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5_4:8721534-8721553 | Msa0835390:CDS | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5_4:8721609-8721628 | Msa0835390:CDS | 35.0% |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5_4:8721634-8721653 | Msa0835390:CDS | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5_4:8721805-8721824 | Msa0835390:CDS | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5_4:8721810-8721829 | Msa0835390:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5_4:8721824-8721843 | Msa0835390:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5_4:8721959-8721978 | None:intergenic | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5_4:8722026-8722045 | None:intergenic | 35.0% | |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5_4:8722045-8722064 | None:intergenic | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5_4:8722056-8722075 | None:intergenic | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5_4:8722190-8722209 | None:intergenic | 35.0% | |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5_4:8722194-8722213 | Msa0835390:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5_4:8722222-8722241 | Msa0835390:CDS | 35.0% |
| ! | TGCTAAAACGACACGTATTT+TGG | - | chr5_4:8722276-8722295 | Msa0835390:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5_4:8722360-8722379 | Msa0835390:intron | 35.0% |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5_4:8722393-8722412 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5_4:8722394-8722413 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5_4:8722393-8722412 | Msa0835390:intron | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr5_4:8722571-8722590 | Msa0835390:CDS | 35.0% |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5_4:8721206-8721225 | Msa0835390:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5_4:8721321-8721340 | None:intergenic | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5_4:8721470-8721489 | Msa0835390:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5_4:8721534-8721553 | Msa0835390:CDS | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5_4:8721609-8721628 | Msa0835390:CDS | 35.0% |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5_4:8721634-8721653 | Msa0835390:CDS | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5_4:8721805-8721824 | Msa0835390:CDS | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5_4:8721810-8721829 | Msa0835390:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5_4:8721824-8721843 | Msa0835390:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5_4:8721959-8721978 | None:intergenic | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5_4:8722026-8722045 | None:intergenic | 35.0% | |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5_4:8722045-8722064 | None:intergenic | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5_4:8722056-8722075 | None:intergenic | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5_4:8722190-8722209 | None:intergenic | 35.0% | |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5_4:8722194-8722213 | Msa0835390:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5_4:8722222-8722241 | Msa0835390:CDS | 35.0% |
| ! | TGCTAAAACGACACGTATTT+TGG | - | chr5_4:8722276-8722295 | Msa0835390:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5_4:8722360-8722379 | Msa0835390:intron | 35.0% |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5_4:8722393-8722412 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5_4:8722394-8722413 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5_4:8722393-8722412 | Msa0835390:intron | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr5_4:8722571-8722590 | Msa0835390:CDS | 35.0% |
| CTCTCGAACAATCACACTAA+CGG | + | chr5_4:8721164-8721183 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5_4:8721220-8721239 | Msa0835390:CDS | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5_4:8721247-8721266 | None:intergenic | 40.0% |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5_4:8721313-8721332 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5_4:8721473-8721492 | Msa0835390:CDS | 40.0% | |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5_4:8721602-8721621 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5_4:8721603-8721622 | None:intergenic | 40.0% |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5_4:8721613-8721632 | None:intergenic | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5_4:8721635-8721654 | None:intergenic | 40.0% | |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5_4:8721765-8721784 | Msa0835390:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5_4:8721772-8721791 | Msa0835390:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5_4:8721773-8721792 | Msa0835390:CDS | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5_4:8721844-8721863 | Msa0835390:CDS | 40.0% |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5_4:8721958-8721977 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5_4:8721999-8722018 | None:intergenic | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5_4:8722016-8722035 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5_4:8722069-8722088 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5_4:8722070-8722089 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5_4:8722165-8722184 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5_4:8722186-8722205 | None:intergenic | 40.0% | |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5_4:8722187-8722206 | None:intergenic | 40.0% | |
| !! | AAACGACACGTATTTTGGAC+CGG | - | chr5_4:8722281-8722300 | Msa0835390:CDS | 40.0% |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5_4:8722337-8722356 | None:intergenic | 40.0% | |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5_4:8722335-8722354 | Msa0835390:intron | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5_4:8722361-8722380 | Msa0835390:intron | 40.0% |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5_4:8722419-8722438 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5_4:8722420-8722439 | None:intergenic | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5_4:8722420-8722439 | Msa0835390:intron | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5_4:8722426-8722445 | Msa0835390:intron | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5_4:8722479-8722498 | Msa0835390:CDS | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5_4:8722484-8722503 | Msa0835390:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5_4:8722496-8722515 | None:intergenic | 40.0% | |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5_4:8722497-8722516 | Msa0835390:CDS | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5_4:8722626-8722645 | None:intergenic | 40.0% |
| CTCTCGAACAATCACACTAA+CGG | + | chr5_4:8721164-8721183 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5_4:8721220-8721239 | Msa0835390:CDS | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5_4:8721247-8721266 | None:intergenic | 40.0% |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5_4:8721313-8721332 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5_4:8721473-8721492 | Msa0835390:CDS | 40.0% | |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5_4:8721602-8721621 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5_4:8721603-8721622 | None:intergenic | 40.0% |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5_4:8721613-8721632 | None:intergenic | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5_4:8721635-8721654 | None:intergenic | 40.0% | |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5_4:8721765-8721784 | Msa0835390:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5_4:8721772-8721791 | Msa0835390:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5_4:8721773-8721792 | Msa0835390:CDS | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5_4:8721844-8721863 | Msa0835390:CDS | 40.0% |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5_4:8721958-8721977 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5_4:8721999-8722018 | None:intergenic | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5_4:8722016-8722035 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5_4:8722069-8722088 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5_4:8722070-8722089 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5_4:8722165-8722184 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5_4:8722186-8722205 | None:intergenic | 40.0% | |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5_4:8722187-8722206 | None:intergenic | 40.0% | |
| !! | AAACGACACGTATTTTGGAC+CGG | - | chr5_4:8722281-8722300 | Msa0835390:CDS | 40.0% |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5_4:8722337-8722356 | None:intergenic | 40.0% | |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5_4:8722335-8722354 | Msa0835390:intron | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5_4:8722361-8722380 | Msa0835390:intron | 40.0% |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5_4:8722419-8722438 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5_4:8722420-8722439 | None:intergenic | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5_4:8722420-8722439 | Msa0835390:intron | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5_4:8722426-8722445 | Msa0835390:intron | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5_4:8722479-8722498 | Msa0835390:CDS | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5_4:8722484-8722503 | Msa0835390:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5_4:8722496-8722515 | None:intergenic | 40.0% | |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5_4:8722497-8722516 | Msa0835390:CDS | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5_4:8722626-8722645 | None:intergenic | 40.0% |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5_4:8721255-8721274 | None:intergenic | 45.0% | |
| !! | TTGGTAGCGTACCGTTGATT+AGG | + | chr5_4:8721648-8721667 | None:intergenic | 45.0% |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5_4:8721934-8721953 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5_4:8722039-8722058 | None:intergenic | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5_4:8722112-8722131 | Msa0835390:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5_4:8722113-8722132 | Msa0835390:intron | 45.0% |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5_4:8722134-8722153 | Msa0835390:intron | 45.0% | |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5_4:8722140-8722159 | None:intergenic | 45.0% |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5_4:8722139-8722158 | Msa0835390:intron | 45.0% | |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5_4:8722160-8722179 | None:intergenic | 45.0% | |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5_4:8722159-8722178 | Msa0835390:CDS | 45.0% |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5_4:8722166-8722185 | None:intergenic | 45.0% | |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5_4:8722176-8722195 | Msa0835390:CDS | 45.0% |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5_4:8722177-8722196 | Msa0835390:CDS | 45.0% | |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5_4:8722229-8722248 | Msa0835390:CDS | 45.0% |
| !! | AACGACACGTATTTTGGACC+GGG | - | chr5_4:8722282-8722301 | Msa0835390:CDS | 45.0% |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5_4:8722328-8722347 | None:intergenic | 45.0% | |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5_4:8722334-8722353 | Msa0835390:intron | 45.0% |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5_4:8722403-8722422 | Msa0835390:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5_4:8722404-8722423 | Msa0835390:intron | 45.0% | |
| TTGGCTATGGAATGTGAGTG+TGG | - | chr5_4:8722439-8722458 | Msa0835390:intron | 45.0% | |
| TGGCTATGGAATGTGAGTGT+GGG | - | chr5_4:8722440-8722459 | Msa0835390:intron | 45.0% | |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr5_4:8722578-8722597 | Msa0835390:CDS | 45.0% |
| ATTGGACCAAGTCTATGCCA+GGG | - | chr5_4:8722596-8722615 | Msa0835390:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5_4:8722616-8722635 | None:intergenic | 45.0% | |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5_4:8721255-8721274 | None:intergenic | 45.0% | |
| !! | TTGGTAGCGTACCGTTGATT+AGG | + | chr5_4:8721648-8721667 | None:intergenic | 45.0% |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5_4:8721934-8721953 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5_4:8722039-8722058 | None:intergenic | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5_4:8722112-8722131 | Msa0835390:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5_4:8722113-8722132 | Msa0835390:intron | 45.0% |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5_4:8722134-8722153 | Msa0835390:intron | 45.0% | |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5_4:8722140-8722159 | None:intergenic | 45.0% |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5_4:8722139-8722158 | Msa0835390:intron | 45.0% | |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5_4:8722160-8722179 | None:intergenic | 45.0% | |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5_4:8722159-8722178 | Msa0835390:CDS | 45.0% |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5_4:8722166-8722185 | None:intergenic | 45.0% | |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5_4:8722176-8722195 | Msa0835390:CDS | 45.0% |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5_4:8722177-8722196 | Msa0835390:CDS | 45.0% | |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5_4:8722229-8722248 | Msa0835390:CDS | 45.0% |
| !! | AACGACACGTATTTTGGACC+GGG | - | chr5_4:8722282-8722301 | Msa0835390:CDS | 45.0% |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5_4:8722328-8722347 | None:intergenic | 45.0% | |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5_4:8722334-8722353 | Msa0835390:intron | 45.0% |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5_4:8722403-8722422 | Msa0835390:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5_4:8722404-8722423 | Msa0835390:intron | 45.0% | |
| TTGGCTATGGAATGTGAGTG+TGG | - | chr5_4:8722439-8722458 | Msa0835390:intron | 45.0% | |
| TGGCTATGGAATGTGAGTGT+GGG | - | chr5_4:8722440-8722459 | Msa0835390:intron | 45.0% | |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr5_4:8722578-8722597 | Msa0835390:CDS | 45.0% |
| ATTGGACCAAGTCTATGCCA+GGG | - | chr5_4:8722596-8722615 | Msa0835390:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5_4:8722616-8722635 | None:intergenic | 45.0% | |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5_4:8721259-8721278 | Msa0835390:CDS | 50.0% | |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5_4:8721272-8721291 | None:intergenic | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5_4:8721303-8721322 | None:intergenic | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5_4:8721306-8721325 | None:intergenic | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5_4:8721306-8721325 | Msa0835390:CDS | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5_4:8721779-8721798 | Msa0835390:CDS | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5_4:8721780-8721799 | Msa0835390:CDS | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5_4:8721941-8721960 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5_4:8722007-8722026 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5_4:8722125-8722144 | None:intergenic | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5_4:8722130-8722149 | None:intergenic | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5_4:8722326-8722345 | Msa0835390:intron | 50.0% |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5_4:8722387-8722406 | Msa0835390:intron | 50.0% | |
| GGCTATGGAATGTGAGTGTG+GGG | - | chr5_4:8722441-8722460 | Msa0835390:intron | 50.0% | |
| GATTGGACCAAGTCTATGCC+AGG | - | chr5_4:8722595-8722614 | Msa0835390:CDS | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5_4:8722612-8722631 | Msa0835390:CDS | 50.0% |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5_4:8721259-8721278 | Msa0835390:CDS | 50.0% | |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5_4:8721272-8721291 | None:intergenic | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5_4:8721303-8721322 | None:intergenic | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5_4:8721306-8721325 | None:intergenic | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5_4:8721306-8721325 | Msa0835390:CDS | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5_4:8721779-8721798 | Msa0835390:CDS | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5_4:8721780-8721799 | Msa0835390:CDS | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5_4:8721941-8721960 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5_4:8722007-8722026 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5_4:8722125-8722144 | None:intergenic | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5_4:8722130-8722149 | None:intergenic | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5_4:8722326-8722345 | Msa0835390:intron | 50.0% |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5_4:8722387-8722406 | Msa0835390:intron | 50.0% | |
| GGCTATGGAATGTGAGTGTG+GGG | - | chr5_4:8722441-8722460 | Msa0835390:intron | 50.0% | |
| GATTGGACCAAGTCTATGCC+AGG | - | chr5_4:8722595-8722614 | Msa0835390:CDS | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5_4:8722612-8722631 | Msa0835390:CDS | 50.0% |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5_4:8721275-8721294 | Msa0835390:CDS | 55.0% |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5_4:8721276-8721295 | Msa0835390:CDS | 55.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5_4:8722149-8722168 | Msa0835390:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5_4:8722313-8722332 | None:intergenic | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5_4:8722315-8722334 | Msa0835390:intron | 55.0% |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5_4:8722367-8722386 | Msa0835390:intron | 55.0% | |
| GGAATGTGAGTGTGGGGTTG+TGG | - | chr5_4:8722447-8722466 | Msa0835390:intron | 55.0% | |
| GGAGATCCCTGGCATAGACT+TGG | + | chr5_4:8722605-8722624 | None:intergenic | 55.0% | |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5_4:8721275-8721294 | Msa0835390:CDS | 55.0% |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5_4:8721276-8721295 | Msa0835390:CDS | 55.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5_4:8722149-8722168 | Msa0835390:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5_4:8722313-8722332 | None:intergenic | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5_4:8722315-8722334 | Msa0835390:intron | 55.0% |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5_4:8722367-8722386 | Msa0835390:intron | 55.0% | |
| GGAATGTGAGTGTGGGGTTG+TGG | - | chr5_4:8722447-8722466 | Msa0835390:intron | 55.0% | |
| GGAGATCCCTGGCATAGACT+TGG | + | chr5_4:8722605-8722624 | None:intergenic | 55.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5_4:8721288-8721307 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5_4:8721289-8721308 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5_4:8721290-8721309 | None:intergenic | 60.0% |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5_4:8722293-8722312 | Msa0835390:intron | 60.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5_4:8722303-8722322 | None:intergenic | 60.0% | |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5_4:8722309-8722328 | Msa0835390:intron | 60.0% |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5_4:8722378-8722397 | Msa0835390:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5_4:8722456-8722475 | Msa0835390:intron | 60.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5_4:8721288-8721307 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5_4:8721289-8721308 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5_4:8721290-8721309 | None:intergenic | 60.0% |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5_4:8722293-8722312 | Msa0835390:intron | 60.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5_4:8722303-8722322 | None:intergenic | 60.0% | |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5_4:8722309-8722328 | Msa0835390:intron | 60.0% |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5_4:8722378-8722397 | Msa0835390:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5_4:8722456-8722475 | Msa0835390:intron | 60.0% | |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5_4:8722300-8722319 | Msa0835390:intron | 65.0% | |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5_4:8722300-8722319 | Msa0835390:intron | 65.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5_4:8722250-8722269 | Msa0835390:CDS | 75.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5_4:8722251-8722270 | Msa0835390:CDS | 75.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5_4:8722250-8722269 | Msa0835390:CDS | 75.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5_4:8722251-8722270 | Msa0835390:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8721145 | 8722651 | 8721145 | ID=Msa0835390;Name=Msa0835390 |
| chr5_4 | mRNA | 8721145 | 8722651 | 8721145 | ID=Msa0835390-mRNA-1;Parent=Msa0835390;Name=Msa0835390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|403 |
| chr5_4 | exon | 8722469 | 8722651 | 8722469 | ID=Msa0835390-mRNA-1:exon:3852;Parent=Msa0835390-mRNA-1 |
| chr5_4 | exon | 8722141 | 8722304 | 8722141 | ID=Msa0835390-mRNA-1:exon:3851;Parent=Msa0835390-mRNA-1 |
| chr5_4 | exon | 8721145 | 8722009 | 8721145 | ID=Msa0835390-mRNA-1:exon:3850;Parent=Msa0835390-mRNA-1 |
| chr5_4 | CDS | 8722469 | 8722651 | 8722469 | ID=Msa0835390-mRNA-1:cds;Parent=Msa0835390-mRNA-1 |
| chr5_4 | CDS | 8722141 | 8722304 | 8722141 | ID=Msa0835390-mRNA-1:cds;Parent=Msa0835390-mRNA-1 |
| chr5_4 | CDS | 8721145 | 8722009 | 8721145 | ID=Msa0835390-mRNA-1:cds;Parent=Msa0835390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
