AlfalfaGEDB | Msa0835390

M. sativa cultivar zhongmu-4 / Msa0835390

KEGG: -
GO: GO:0000902 GO:0003674 GO:0003824 GO:0006464 GO:0006473 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009826 GO:0009987 GO:0010033 GO:0016043 GO:0016049 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1901564
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835390	XP_003611609.2	96.278	403	15	0	1	403	1	403	0.0	805

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835390	sp\|O64815\|HLS1L_ARATH	68.357	414	113	4	6	403	2	413	0.0	568

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835390	G7K3U7	96.278	403	15	0	1	403	1	403	0.0	805

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TFs/TRs:

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Gene ID	Type	Classification
Msa0835390	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0713980	Msa0835390	0.806476	8.074440e-50	-8.615850e-47
Msa0756200	Msa0835390	0.909390	6.005608e-82	-8.615850e-47
Msa0756230	Msa0835390	0.948003	2.227571e-106	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835390	MtrunA17_Chr5g0401351	96.278	403	15	0	1	403	1	403	0.0	805
Msa0835390	MtrunA17_Chr4g0053961	71.149	409	108	4	5	403	3	411	0.0	606
Msa0835390	MtrunA17_Chr4g0001411	47.573	412	187	8	2	403	17	409	1.93e-125	368
Msa0835390	MtrunA17_Chr3g0105631	47.619	399	185	7	11	403	8	388	8.75e-120	353
Msa0835390	MtrunA17_Chr4g0068331	34.793	411	236	12	9	402	11	406	4.28e-61	202

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835390	AT2G23060.1	68.357	414	113	4	6	403	2	413	0.0	568
Msa0835390	AT4G37580.1	67.332	401	124	3	10	403	3	403	0.0	544
Msa0835390	AT5G67430.1	60.253	395	141	6	9	403	8	386	2.48e-167	474
Msa0835390	AT4G37580.2	68.035	341	105	2	67	403	6	346	9.09e-166	468
Msa0835390	AT2G23060.2	70.251	279	80	1	128	403	1	279	6.00e-144	410
Msa0835390	AT5G67430.2	61.446	332	117	5	72	403	1	321	4.63e-142	407
Msa0835390	AT2G30090.1	41.791	402	195	7	11	403	15	386	2.62e-95	291

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Find 97 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTACGGTAGAGAAA+CGG	0.566914	5_4:+8721732	None:intergenic
AAAAGAAACCTATCTGGGCC+AGG	0.540432	5_4:+8721617	None:intergenic
AAAATAGCCCAAGAACAAGG+TGG	0.667856	5_4:+8721590	None:intergenic
AAACATGGCCTGGCCCAGAT+AGG	0.535009	5_4:-8721625	Msa0835390:CDS
AAAGAAGGTGAAGATGGTTA+AGG	0.518056	5_4:-8721381	Msa0835390:CDS
AAAGAGTAGAAGCAGTTGAA+AGG	0.557149	5_4:-8722568	Msa0835390:CDS
AAATAGCCCAAGAACAAGGT+GGG	0.635584	5_4:+8721591	None:intergenic
AAGAGAGAAAGTTGGTCACT+AGG	0.553217	5_4:+8722530	None:intergenic
AAGATGGTTAAGGCCCTTTG+TGG	0.430907	5_4:-8721371	Msa0835390:CDS
AAGCGAGTTTGGTGTAAACT+GGG	0.687492	5_4:+8722175	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATAGTTGGAATGATAAG+AGG	-	chr5_4:8721510-8721529	Msa0835390:CDS	30.0%
GTTGAAGCTAGTGAAAAAAA+TGG	-	chr5_4:8721802-8721821	Msa0835390:CDS	30.0%
AAACTCTTCACTGAAAAATG+CGG	-	chr5_4:8721896-8721915	Msa0835390:CDS	30.0%
GAAATAGTTGGAATGATAAG+AGG	-	chr5_4:8721510-8721529	Msa0835390:CDS	30.0%
GTTGAAGCTAGTGAAAAAAA+TGG	-	chr5_4:8721802-8721821	Msa0835390:CDS	30.0%
AAACTCTTCACTGAAAAATG+CGG	-	chr5_4:8721896-8721915	Msa0835390:CDS	30.0%
AAAGAGTAGAAGCAGTTGAA+AGG	-	chr5_4:8721206-8721225	Msa0835390:CDS	35.0%
TGTGAATATATACCAGCATG+AGG	+	chr5_4:8721321-8721340	None:intergenic	35.0%
TCTATGTTCTTGGTTTCAAC+AGG	-	chr5_4:8721470-8721489	Msa0835390:CDS	35.0%
TGCATAAAAACAGTCACATG+CGG	-	chr5_4:8721534-8721553	Msa0835390:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	8721145	8722651	8721145	ID=Msa0835390;Name=Msa0835390
chr5_4	mRNA	8721145	8722651	8721145	ID=Msa0835390-mRNA-1;Parent=Msa0835390;Name=Msa0835390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|403
chr5_4	exon	8722469	8722651	8722469	ID=Msa0835390-mRNA-1:exon:3852;Parent=Msa0835390-mRNA-1
chr5_4	exon	8722141	8722304	8722141	ID=Msa0835390-mRNA-1:exon:3851;Parent=Msa0835390-mRNA-1
chr5_4	exon	8721145	8722009	8721145	ID=Msa0835390-mRNA-1:exon:3850;Parent=Msa0835390-mRNA-1
chr5_4	CDS	8722469	8722651	8722469	ID=Msa0835390-mRNA-1:cds;Parent=Msa0835390-mRNA-1
chr5_4	CDS	8722141	8722304	8722141	ID=Msa0835390-mRNA-1:cds;Parent=Msa0835390-mRNA-1
chr5_4	CDS	8721145	8722009	8721145	ID=Msa0835390-mRNA-1:cds;Parent=Msa0835390-mRNA-1

Gene Sequence

>Msa0835390

ATGAGAGTTGATGAATCCGTTAGTGTGATTGTTCGAGAGTTCGAAGTTAATAAAGACAAAGAAAGAGTAGAAGCAGTTGAAAGGACATGTGAAGTTGGACCTAGTGACCAACTTTCTCTCTTCACCGACATGCTTGGTGACCCCATTTGCAGGGTCCGCCACTCACCTTCTTTCCTCATGCTGGTGGCTGAAATTGATAAAGAAATAGTTGGAATGATAAGAGGATGCATAAAAACAGTCACATGCGGTAAAAACGTCTCAAGATCGAAAACATCTCTCACTAAACACATCCCAGTTTACACCAAACTCGCTTACATTTTAGGCCTTCGTGTTTCTCCTAATCAACGGAGAATGGGAATAGGGTTGAAGCTAGTGAAAAAAATGGAGGCATGGTTTAAAGATAACGGCGCTGAATATTCATATATGGCAACGGAAACCGAAAATTTAGCATCCGTTAAACTCTTCACTGAAAAATGCGGTTATTCAAAGTTCCGTACACCGTCAATTCTCGTCAACCCCGTTTATGCTCACAGAACAAAAATTTCAAGAAAAGTCACCATCATTCCGTTAACTCCTTCTGACGCCGTTATATTCTACCGTAACCGTTTCTCTACCGTAGAGTTTTTCCCTAATGACATTGACGCTGTTCTTAATAACAAACTTAATCTAGGTACTTTTCTTGCCGTACCAAGTGGGTCCTACAGTGTCAAAACATGGCCTGGCCCAGATAGGTTTCTTTTGGACCCACCTTGTTCTTGGGCTATTTTAAGTGTTTGGAATTCTAAAGAGGTTTTTAAGCTCGAGGTACGTGGCGCGTCGCGTGTCAAGCGCGGGCTTGCTAAAACGACACGTATTTTGGACCGGGCTTTGCCGTGGTTGAAGGTACCGTCGGTTCCGGATTTGTTTAGGCCTTTTGGGTTTCATTTTTTGTATGGGCTTGGGGGTGAAGGCCCAAAGAAGGTGAAGATGGTTAAGGCCCTTTGTGGGTTTGCGCATAATTTGGCTATGGAATGTGAGTGTGGGGTTGTGGCTACTGAGGTTGCTTCATGTGAACCATTGAGGTTTGGTATACCTCATTGGAAAATGTTATCTTGTGCTAATGATTTATGGTGTATTAAGAGGCTTGTTGATGATTATAGTGATGGTTCTGTTGGTGATTGGACCAAGTCTATGCCAGGGATCTCCATTTTTGTGGATCCTAGAGAGATTTAA

Protein sequence

>Msa0835390

MRVDESVSVIVREFEVNKDKERVEAVERTCEVGPSDQLSLFTDMLGDPICRVRHSPSFLMLVAEIDKEIVGMIRGCIKTVTCGKNVSRSKTSLTKHIPVYTKLAYILGLRVSPNQRRMGIGLKLVKKMEAWFKDNGAEYSYMATETENLASVKLFTEKCGYSKFRTPSILVNPVYAHRTKISRKVTIIPLTPSDAVIFYRNRFSTVEFFPNDIDAVLNNKLNLGTFLAVPSGSYSVKTWPGPDRFLLDPPCSWAILSVWNSKEVFKLEVRGASRVKRGLAKTTRILDRALPWLKVPSVPDLFRPFGFHFLYGLGGEGPKKVKMVKALCGFAHNLAMECECGVVATEVASCEPLRFGIPHWKMLSCANDLWCIKRLVDDYSDGSVGDWTKSMPGISIFVDPREI*