Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756230 | sp|O64815|HLS1L_ARATH | 68.116 | 414 | 114 | 4 | 6 | 403 | 2 | 413 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756230 | G7K3U7 | 96.030 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 0.0 | 804 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0756230 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713980 | Msa0756230 | 0.841205 | 5.472494e-58 | -8.615850e-47 |
| Msa0756200 | Msa0756230 | 0.930201 | 2.312321e-93 | -8.615850e-47 |
| Msa0756230 | Msa0835390 | 0.948003 | 2.227571e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756230 | MtrunA17_Chr5g0401351 | 96.030 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 0.0 | 804 |
| Msa0756230 | MtrunA17_Chr4g0053961 | 70.905 | 409 | 109 | 4 | 5 | 403 | 3 | 411 | 0.0 | 605 |
| Msa0756230 | MtrunA17_Chr4g0001411 | 47.816 | 412 | 186 | 8 | 2 | 403 | 17 | 409 | 6.86e-126 | 369 |
| Msa0756230 | MtrunA17_Chr3g0105631 | 47.870 | 399 | 184 | 7 | 11 | 403 | 8 | 388 | 2.53e-120 | 354 |
| Msa0756230 | MtrunA17_Chr4g0068331 | 34.550 | 411 | 237 | 12 | 9 | 402 | 11 | 406 | 9.58e-61 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756230 | AT2G23060.1 | 68.116 | 414 | 114 | 4 | 6 | 403 | 2 | 413 | 0.0 | 567 |
| Msa0756230 | AT4G37580.1 | 67.082 | 401 | 125 | 3 | 10 | 403 | 3 | 403 | 0.0 | 543 |
| Msa0756230 | AT5G67430.1 | 60.000 | 395 | 142 | 6 | 9 | 403 | 8 | 386 | 5.17e-167 | 473 |
| Msa0756230 | AT4G37580.2 | 67.742 | 341 | 106 | 2 | 67 | 403 | 6 | 346 | 1.42e-165 | 468 |
| Msa0756230 | AT2G23060.2 | 69.892 | 279 | 81 | 1 | 128 | 403 | 1 | 279 | 1.22e-143 | 410 |
| Msa0756230 | AT5G67430.2 | 61.145 | 332 | 118 | 5 | 72 | 403 | 1 | 321 | 9.62e-142 | 407 |
| Msa0756230 | AT2G30090.1 | 42.040 | 402 | 194 | 7 | 11 | 403 | 15 | 386 | 9.27e-96 | 292 |
Find 97 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAACGACACGTATTT+TGG | 0.139903 | 5_2:-10303442 | Msa0756230:CDS |
| TTAACCATCTTCACCTTCTT+TGG | 0.150962 | 5_2:+10303327 | None:intergenic |
| TATCTTGTGCTAATGATTTA+TGG | 0.162688 | 5_2:-10303191 | Msa0756230:CDS |
| CCGGATTTGTTTAGGCCTTT+TGG | 0.177590 | 5_2:-10303384 | Msa0756230:CDS |
| TGGCCCAGATAGGTTTCTTT+TGG | 0.229875 | 5_2:-10303559 | Msa0756230:CDS |
| TGCTTGGTGACCCCATTTGC+AGG | 0.320702 | 5_2:-10304443 | Msa0756230:CDS |
| TAACCATCTTCACCTTCTTT+GGG | 0.322009 | 5_2:+10303328 | None:intergenic |
| GCCTAAAATGTAAGCGAGTT+TGG | 0.325207 | 5_2:+10304108 | None:intergenic |
| AGAACAGCGTCAATGTCATT+AGG | 0.331188 | 5_2:+10303651 | None:intergenic |
| CTTAATAACAAACTTAATCT+AGG | 0.336122 | 5_2:-10303630 | Msa0756230:CDS |
| TAAGCGAGTTTGGTGTAAAC+TGG | 0.336993 | 5_2:+10304118 | None:intergenic |
| TTGTGGGTTTGCGCATAATA+TGG | 0.337467 | 5_2:-10303298 | Msa0756230:CDS |
| TTTGGACCCACCTTGTTCTT+GGG | 0.345593 | 5_2:-10303541 | Msa0756230:CDS |
| CGTCGGTTCCGGATTTGTTT+AGG | 0.361537 | 5_2:-10303392 | Msa0756230:CDS |
| CGGCGCTGAATATTCATATA+TGG | 0.362736 | 5_2:-10303874 | Msa0756230:CDS |
| TTGGTAGCGTACCGTTGATT+AGG | 0.367983 | 5_2:+10304073 | None:intergenic |
| GGGTCCAAAAGAAACCTATC+TGG | 0.369698 | 5_2:+10303555 | None:intergenic |
| GTTGAAGGTACCGTCGGTTC+CGG | 0.377354 | 5_2:-10303403 | Msa0756230:CDS |
| ATGATTTATGGTGTATTAAG+AGG | 0.386924 | 5_2:-10303179 | Msa0756230:CDS |
| TTTGTTCTGTGAGCATAAAC+GGG | 0.400112 | 5_2:+10303762 | None:intergenic |
| CCGGGCTTTGCCGTGGTTGA+AGG | 0.401375 | 5_2:-10303418 | Msa0756230:CDS |
| TGAGGTTTGGTATACCTCAT+TGG | 0.402328 | 5_2:-10303221 | Msa0756230:CDS |
| TGGTGCAGGAGAATGGGAAT+AGG | 0.414994 | 5_2:-10303939 | Msa0756230:intron |
| GAACAGCGTCAATGTCATTA+GGG | 0.415763 | 5_2:+10303652 | None:intergenic |
| TGAGTGGCGGACCCTGCAAA+TGG | 0.420570 | 5_2:+10304431 | None:intergenic |
| GGCGCGTCGCGTGTCAAGCG+CGG | 0.428563 | 5_2:-10303468 | Msa0756230:CDS |
| AAGATGGTTAAGGCCCTTTG+TGG | 0.430907 | 5_2:-10303315 | Msa0756230:CDS |
| GCGCGTCGCGTGTCAAGCGC+GGG | 0.431919 | 5_2:-10303467 | Msa0756230:CDS |
| GAGTGGCGGACCCTGCAAAT+GGG | 0.439578 | 5_2:+10304432 | None:intergenic |
| CTCACCTTCTTTCCTCATGC+TGG | 0.441437 | 5_2:-10304412 | Msa0756230:intron |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.447246 | 5_2:-10303140 | Msa0756230:CDS |
| GAAATAGTTGGAATGATAAG+AGG | 0.455218 | 5_2:-10304208 | Msa0756230:CDS |
| GGTGCAGGAGAATGGGAATA+GGG | 0.455976 | 5_2:-10303938 | Msa0756230:intron |
| GGAATGTGAGTGTGGGGTTG+TGG | 0.464310 | 5_2:-10303271 | Msa0756230:CDS |
| GAAATTGATAAAGAAATAGT+TGG | 0.468243 | 5_2:-10304220 | Msa0756230:CDS |
| TGACGAGAATTGACGGTGTA+CGG | 0.468550 | 5_2:+10303787 | None:intergenic |
| TCATGTGAACCATTGAGGTT+TGG | 0.476876 | 5_2:-10303234 | Msa0756230:CDS |
| TCTCTCTTCACCGACATGCT+TGG | 0.485318 | 5_2:-10304459 | Msa0756230:CDS |
| TACAGTGTCAAAACATGGCC+TGG | 0.491753 | 5_2:-10303579 | Msa0756230:CDS |
| AGATGGTTAAGGCCCTTTGT+GGG | 0.493646 | 5_2:-10303314 | Msa0756230:CDS |
| AAGTGTTTGGAATTCTAAAG+AGG | 0.505817 | 5_2:-10303511 | Msa0756230:CDS |
| CTTGTTGATGATTATAGTGA+TGG | 0.506465 | 5_2:-10303156 | Msa0756230:CDS |
| GATTGGACCAAGTCTATGCC+AGG | 0.509333 | 5_2:-10303123 | Msa0756230:CDS |
| CCAAAAGGCCTAAACAAATC+CGG | 0.512387 | 5_2:+10303384 | None:intergenic |
| AAAGAAGGTGAAGATGGTTA+AGG | 0.518056 | 5_2:-10303325 | Msa0756230:CDS |
| CCTTCAACCACGGCAAAGCC+CGG | 0.518891 | 5_2:+10303418 | None:intergenic |
| ACAACTTCTTAAATCTCTCT+AGG | 0.519282 | 5_2:+10303081 | None:intergenic |
| TTGCTTCATGTGAACCATTG+AGG | 0.519399 | 5_2:-10303239 | Msa0756230:CDS |
| GATTATAGTGATGGTTCTGT+TGG | 0.524315 | 5_2:-10303147 | Msa0756230:CDS |
| ACGGCGTCAGAAGGAGTTAA+CGG | 0.524819 | 5_2:+10303714 | None:intergenic |
| TATACCAGCATGAGGAAAGA+AGG | 0.530072 | 5_2:+10304408 | None:intergenic |
| ACCGACGGTACCTTCAACCA+CGG | 0.534359 | 5_2:+10303408 | None:intergenic |
| AAACATGGCCTGGCCCAGAT+AGG | 0.535009 | 5_2:-10303569 | Msa0756230:CDS |
| TAGAATATAACGGCGTCAGA+AGG | 0.539306 | 5_2:+10303705 | None:intergenic |
| AAAAGAAACCTATCTGGGCC+AGG | 0.540432 | 5_2:+10303561 | None:intergenic |
| GCTTGGTGACCCCATTTGCA+GGG | 0.548286 | 5_2:-10304442 | Msa0756230:CDS |
| GTTGAAAGGACATGTGAAGT+TGG | 0.549405 | 5_2:-10304498 | Msa0756230:CDS |
| AAGAGAGAAAGTTGGTCACT+AGG | 0.553217 | 5_2:+10304474 | None:intergenic |
| AAAGAGTAGAAGCAGTTGAA+AGG | 0.557149 | 5_2:-10304512 | Msa0756230:CDS |
| TATTATGCGCAAACCCACAA+AGG | 0.558832 | 5_2:+10303301 | None:intergenic |
| AGAAGGAGTTAACGGAATGA+TGG | 0.559153 | 5_2:+10303722 | None:intergenic |
| GGAGATCCCTGGCATAGACT+TGG | 0.559706 | 5_2:+10303116 | None:intergenic |
| TGAGGTATACCAAACCTCAA+TGG | 0.563011 | 5_2:+10303225 | None:intergenic |
| TGGCTATGGAATGTGAGTGT+GGG | 0.565021 | 5_2:-10303278 | Msa0756230:CDS |
| ACGGGGTTGACGAGAATTGA+CGG | 0.566648 | 5_2:+10303780 | None:intergenic |
| AAAACTCTACGGTAGAGAAA+CGG | 0.566914 | 5_2:+10303676 | None:intergenic |
| GCCGTGGTTGAAGGTACCGT+CGG | 0.570164 | 5_2:-10303409 | Msa0756230:CDS |
| ACTGTAGGACCCACTTGGTA+CGG | 0.571473 | 5_2:+10303596 | None:intergenic |
| TTGACACTGTAGGACCCACT+TGG | 0.573131 | 5_2:+10303591 | None:intergenic |
| AGTGGCGGACCCTGCAAATG+GGG | 0.573181 | 5_2:+10304433 | None:intergenic |
| TGAATATTCATATATGGCAA+CGG | 0.574189 | 5_2:-10303868 | Msa0756230:CDS |
| ATTATGCGCAAACCCACAAA+GGG | 0.577889 | 5_2:+10303302 | None:intergenic |
| TTCGTGTTTCTCCTAATCAA+CGG | 0.578954 | 5_2:-10304084 | Msa0756230:intron |
| GAGGCATGGTTTAAAGATAA+CGG | 0.582283 | 5_2:-10303894 | Msa0756230:CDS |
| CTACGGTAGAGAAACGGTTA+CGG | 0.585607 | 5_2:+10303682 | None:intergenic |
| AGGCCCAAAGAAGGTGAAGA+TGG | 0.590583 | 5_2:-10303331 | Msa0756230:CDS |
| GGTCCAAAAGAAACCTATCT+GGG | 0.592928 | 5_2:+10303556 | None:intergenic |
| TGTCGGTGAAGAGAGAAAGT+TGG | 0.598088 | 5_2:+10304466 | None:intergenic |
| CTCTCGAACAATCACACTAA+CGG | 0.599043 | 5_2:+10304557 | None:intergenic |
| TGTGAATATATACCAGCATG+AGG | 0.601698 | 5_2:+10304400 | None:intergenic |
| GTTTGCGCATAATATGGCTA+TGG | 0.608909 | 5_2:-10303292 | Msa0756230:CDS |
| ATGGCTATGGAATGTGAGTG+TGG | 0.610584 | 5_2:-10303279 | Msa0756230:CDS |
| ACGGTTACGGTAGAATATAA+CGG | 0.610597 | 5_2:+10303695 | None:intergenic |
| GGCTATGGAATGTGAGTGTG+GGG | 0.614225 | 5_2:-10303277 | Msa0756230:CDS |
| CTTAAAATAGCCCAAGAACA+AGG | 0.618666 | 5_2:+10303531 | None:intergenic |
| AAATAGCCCAAGAACAAGGT+GGG | 0.635584 | 5_2:+10303535 | None:intergenic |
| GCATGAGGAAAGAAGGTGAG+TGG | 0.642413 | 5_2:+10304415 | None:intergenic |
| CTAAACAAATCCGGAACCGA+CGG | 0.646252 | 5_2:+10303393 | None:intergenic |
| GGTCCTACAGTGTCAAAACA+TGG | 0.647080 | 5_2:-10303584 | Msa0756230:CDS |
| GTGTGGGGTTGTGGCTACTG+AGG | 0.648130 | 5_2:-10303262 | Msa0756230:CDS |
| AATGGGGTCACCAAGCATGT+CGG | 0.667448 | 5_2:+10304449 | None:intergenic |
| AAAATAGCCCAAGAACAAGG+TGG | 0.667856 | 5_2:+10303534 | None:intergenic |
| TGAGGAAAGAAGGTGAGTGG+CGG | 0.676708 | 5_2:+10304418 | None:intergenic |
| ATTGGACCAAGTCTATGCCA+GGG | 0.683595 | 5_2:-10303122 | Msa0756230:CDS |
| TTGTTCTGTGAGCATAAACG+GGG | 0.686756 | 5_2:+10303763 | None:intergenic |
| AAGCGAGTTTGGTGTAAACT+GGG | 0.687492 | 5_2:+10304119 | None:intergenic |
| GTTGATTAGGAGAAACACGA+AGG | 0.743361 | 5_2:+10304086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5_2:10303376-10303395 | None:intergenic | 15.0% |
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5_2:10303376-10303395 | None:intergenic | 15.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5_2:10303442-10303461 | Msa0756230:CDS | 20.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5_2:10304032-10304051 | Msa0756230:intron | 20.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5_2:10303442-10303461 | Msa0756230:CDS | 20.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5_2:10304032-10304051 | Msa0756230:intron | 20.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5_2:10303349-10303368 | Msa0756230:CDS | 25.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5_2:10303402-10303421 | None:intergenic | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5_2:10303404-10303423 | Msa0756230:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5_2:10303611-10303630 | None:intergenic | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5_2:10303794-10303813 | Msa0756230:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5_2:10303823-10303842 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5_2:10303838-10303857 | None:intergenic | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5_2:10304296-10304315 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5_2:10304296-10304315 | Msa0756230:intron | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5_2:10304297-10304316 | Msa0756230:intron | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5_2:10304471-10304490 | Msa0756230:CDS | 25.0% |
| ! | ATGATTTATGGTGTATTAAG+AGG | - | chr5_2:10304483-10304502 | Msa0756230:CDS | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5_2:10303349-10303368 | Msa0756230:CDS | 25.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5_2:10303402-10303421 | None:intergenic | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5_2:10303404-10303423 | Msa0756230:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5_2:10303611-10303630 | None:intergenic | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5_2:10303794-10303813 | Msa0756230:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5_2:10303823-10303842 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5_2:10303838-10303857 | None:intergenic | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5_2:10304296-10304315 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5_2:10304296-10304315 | Msa0756230:intron | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5_2:10304297-10304316 | Msa0756230:intron | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5_2:10304471-10304490 | Msa0756230:CDS | 25.0% |
| ! | ATGATTTATGGTGTATTAAG+AGG | - | chr5_2:10304483-10304502 | Msa0756230:CDS | 25.0% |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5_2:10303454-10303473 | Msa0756230:CDS | 30.0% | |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5_2:10303703-10303722 | Msa0756230:CDS | 30.0% |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5_2:10303746-10303765 | Msa0756230:CDS | 30.0% | |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5_2:10303840-10303859 | Msa0756230:CDS | 30.0% | |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5_2:10303904-10303923 | None:intergenic | 30.0% |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5_2:10304151-10304170 | Msa0756230:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5_2:10304302-10304321 | Msa0756230:intron | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5_2:10304303-10304322 | Msa0756230:intron | 30.0% |
| ! | CAAGATAACATTTTCCAATG+AGG | + | chr5_2:10304458-10304477 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5_2:10304506-10304525 | Msa0756230:CDS | 30.0% |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5_2:10303454-10303473 | Msa0756230:CDS | 30.0% | |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5_2:10303703-10303722 | Msa0756230:CDS | 30.0% |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5_2:10303746-10303765 | Msa0756230:CDS | 30.0% | |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5_2:10303840-10303859 | Msa0756230:CDS | 30.0% | |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5_2:10303904-10303923 | None:intergenic | 30.0% |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5_2:10304151-10304170 | Msa0756230:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5_2:10304302-10304321 | Msa0756230:intron | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5_2:10304303-10304322 | Msa0756230:intron | 30.0% |
| ! | CAAGATAACATTTTCCAATG+AGG | + | chr5_2:10304458-10304477 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5_2:10304506-10304525 | Msa0756230:CDS | 30.0% |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5_2:10303150-10303169 | Msa0756230:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5_2:10303265-10303284 | None:intergenic | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5_2:10303414-10303433 | Msa0756230:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5_2:10303478-10303497 | Msa0756230:CDS | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5_2:10303553-10303572 | Msa0756230:CDS | 35.0% |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5_2:10303578-10303597 | Msa0756230:CDS | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5_2:10303749-10303768 | Msa0756230:CDS | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5_2:10303754-10303773 | Msa0756230:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5_2:10303768-10303787 | Msa0756230:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5_2:10303903-10303922 | None:intergenic | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5_2:10303970-10303989 | None:intergenic | 35.0% | |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5_2:10303989-10304008 | None:intergenic | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5_2:10304000-10304019 | None:intergenic | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5_2:10304134-10304153 | None:intergenic | 35.0% | |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5_2:10304138-10304157 | Msa0756230:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5_2:10304166-10304185 | Msa0756230:CDS | 35.0% |
| ! | TGCTAAAACGACACGTATTT+TGG | - | chr5_2:10304220-10304239 | Msa0756230:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5_2:10304304-10304323 | Msa0756230:intron | 35.0% |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5_2:10304337-10304356 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5_2:10304338-10304357 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5_2:10304337-10304356 | Msa0756230:intron | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr5_2:10304515-10304534 | Msa0756230:CDS | 35.0% |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5_2:10303150-10303169 | Msa0756230:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5_2:10303265-10303284 | None:intergenic | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5_2:10303414-10303433 | Msa0756230:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5_2:10303478-10303497 | Msa0756230:CDS | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5_2:10303553-10303572 | Msa0756230:CDS | 35.0% |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5_2:10303578-10303597 | Msa0756230:CDS | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5_2:10303749-10303768 | Msa0756230:CDS | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5_2:10303754-10303773 | Msa0756230:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5_2:10303768-10303787 | Msa0756230:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5_2:10303903-10303922 | None:intergenic | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5_2:10303970-10303989 | None:intergenic | 35.0% | |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5_2:10303989-10304008 | None:intergenic | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5_2:10304000-10304019 | None:intergenic | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5_2:10304134-10304153 | None:intergenic | 35.0% | |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5_2:10304138-10304157 | Msa0756230:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5_2:10304166-10304185 | Msa0756230:CDS | 35.0% |
| ! | TGCTAAAACGACACGTATTT+TGG | - | chr5_2:10304220-10304239 | Msa0756230:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5_2:10304304-10304323 | Msa0756230:intron | 35.0% |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5_2:10304337-10304356 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5_2:10304338-10304357 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5_2:10304337-10304356 | Msa0756230:intron | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr5_2:10304515-10304534 | Msa0756230:CDS | 35.0% |
| CTCTCGAACAATCACACTAA+CGG | + | chr5_2:10303108-10303127 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5_2:10303164-10303183 | Msa0756230:CDS | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5_2:10303191-10303210 | None:intergenic | 40.0% |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5_2:10303257-10303276 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5_2:10303417-10303436 | Msa0756230:CDS | 40.0% | |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5_2:10303546-10303565 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5_2:10303547-10303566 | None:intergenic | 40.0% |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5_2:10303557-10303576 | None:intergenic | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5_2:10303579-10303598 | None:intergenic | 40.0% | |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5_2:10303709-10303728 | Msa0756230:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5_2:10303716-10303735 | Msa0756230:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5_2:10303717-10303736 | Msa0756230:CDS | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5_2:10303788-10303807 | Msa0756230:CDS | 40.0% |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5_2:10303902-10303921 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5_2:10303943-10303962 | None:intergenic | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5_2:10303960-10303979 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5_2:10304013-10304032 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5_2:10304014-10304033 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5_2:10304109-10304128 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5_2:10304130-10304149 | None:intergenic | 40.0% | |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5_2:10304131-10304150 | None:intergenic | 40.0% | |
| !! | AAACGACACGTATTTTGGAC+CGG | - | chr5_2:10304225-10304244 | Msa0756230:CDS | 40.0% |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5_2:10304281-10304300 | None:intergenic | 40.0% | |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5_2:10304279-10304298 | Msa0756230:intron | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5_2:10304305-10304324 | Msa0756230:intron | 40.0% |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5_2:10304363-10304382 | None:intergenic | 40.0% | |
| TATTATGCGCAAACCCACAA+AGG | + | chr5_2:10304364-10304383 | None:intergenic | 40.0% | |
| TTGTGGGTTTGCGCATAATA+TGG | - | chr5_2:10304364-10304383 | Msa0756230:intron | 40.0% | |
| GTTTGCGCATAATATGGCTA+TGG | - | chr5_2:10304370-10304389 | Msa0756230:intron | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5_2:10304423-10304442 | Msa0756230:CDS | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5_2:10304428-10304447 | Msa0756230:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5_2:10304440-10304459 | None:intergenic | 40.0% | |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5_2:10304441-10304460 | Msa0756230:CDS | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5_2:10304570-10304589 | None:intergenic | 40.0% |
| CTCTCGAACAATCACACTAA+CGG | + | chr5_2:10303108-10303127 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5_2:10303164-10303183 | Msa0756230:CDS | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5_2:10303191-10303210 | None:intergenic | 40.0% |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5_2:10303257-10303276 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5_2:10303417-10303436 | Msa0756230:CDS | 40.0% | |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5_2:10303546-10303565 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5_2:10303547-10303566 | None:intergenic | 40.0% |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5_2:10303557-10303576 | None:intergenic | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5_2:10303579-10303598 | None:intergenic | 40.0% | |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5_2:10303709-10303728 | Msa0756230:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5_2:10303716-10303735 | Msa0756230:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5_2:10303717-10303736 | Msa0756230:CDS | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5_2:10303788-10303807 | Msa0756230:CDS | 40.0% |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5_2:10303902-10303921 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5_2:10303943-10303962 | None:intergenic | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5_2:10303960-10303979 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5_2:10304013-10304032 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5_2:10304014-10304033 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5_2:10304109-10304128 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5_2:10304130-10304149 | None:intergenic | 40.0% | |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5_2:10304131-10304150 | None:intergenic | 40.0% | |
| !! | AAACGACACGTATTTTGGAC+CGG | - | chr5_2:10304225-10304244 | Msa0756230:CDS | 40.0% |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5_2:10304281-10304300 | None:intergenic | 40.0% | |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5_2:10304279-10304298 | Msa0756230:intron | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5_2:10304305-10304324 | Msa0756230:intron | 40.0% |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5_2:10304363-10304382 | None:intergenic | 40.0% | |
| TATTATGCGCAAACCCACAA+AGG | + | chr5_2:10304364-10304383 | None:intergenic | 40.0% | |
| TTGTGGGTTTGCGCATAATA+TGG | - | chr5_2:10304364-10304383 | Msa0756230:intron | 40.0% | |
| GTTTGCGCATAATATGGCTA+TGG | - | chr5_2:10304370-10304389 | Msa0756230:intron | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5_2:10304423-10304442 | Msa0756230:CDS | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5_2:10304428-10304447 | Msa0756230:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5_2:10304440-10304459 | None:intergenic | 40.0% | |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5_2:10304441-10304460 | Msa0756230:CDS | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5_2:10304570-10304589 | None:intergenic | 40.0% |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5_2:10303199-10303218 | None:intergenic | 45.0% | |
| !! | TTGGTAGCGTACCGTTGATT+AGG | + | chr5_2:10303592-10303611 | None:intergenic | 45.0% |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5_2:10303878-10303897 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5_2:10303983-10304002 | None:intergenic | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5_2:10304056-10304075 | Msa0756230:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5_2:10304057-10304076 | Msa0756230:intron | 45.0% |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5_2:10304078-10304097 | Msa0756230:intron | 45.0% | |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5_2:10304084-10304103 | None:intergenic | 45.0% |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5_2:10304083-10304102 | Msa0756230:intron | 45.0% | |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5_2:10304104-10304123 | None:intergenic | 45.0% | |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5_2:10304103-10304122 | Msa0756230:CDS | 45.0% |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5_2:10304110-10304129 | None:intergenic | 45.0% | |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5_2:10304120-10304139 | Msa0756230:CDS | 45.0% |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5_2:10304121-10304140 | Msa0756230:CDS | 45.0% | |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5_2:10304173-10304192 | Msa0756230:CDS | 45.0% |
| !! | AACGACACGTATTTTGGACC+GGG | - | chr5_2:10304226-10304245 | Msa0756230:CDS | 45.0% |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5_2:10304272-10304291 | None:intergenic | 45.0% | |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5_2:10304278-10304297 | Msa0756230:intron | 45.0% |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5_2:10304347-10304366 | Msa0756230:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5_2:10304348-10304367 | Msa0756230:intron | 45.0% | |
| ATGGCTATGGAATGTGAGTG+TGG | - | chr5_2:10304383-10304402 | Msa0756230:intron | 45.0% | |
| TGGCTATGGAATGTGAGTGT+GGG | - | chr5_2:10304384-10304403 | Msa0756230:intron | 45.0% | |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr5_2:10304522-10304541 | Msa0756230:CDS | 45.0% |
| ATTGGACCAAGTCTATGCCA+GGG | - | chr5_2:10304540-10304559 | Msa0756230:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5_2:10304560-10304579 | None:intergenic | 45.0% | |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5_2:10303199-10303218 | None:intergenic | 45.0% | |
| !! | TTGGTAGCGTACCGTTGATT+AGG | + | chr5_2:10303592-10303611 | None:intergenic | 45.0% |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5_2:10303878-10303897 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5_2:10303983-10304002 | None:intergenic | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5_2:10304056-10304075 | Msa0756230:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5_2:10304057-10304076 | Msa0756230:intron | 45.0% |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5_2:10304078-10304097 | Msa0756230:intron | 45.0% | |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5_2:10304084-10304103 | None:intergenic | 45.0% |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5_2:10304083-10304102 | Msa0756230:intron | 45.0% | |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5_2:10304104-10304123 | None:intergenic | 45.0% | |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5_2:10304103-10304122 | Msa0756230:CDS | 45.0% |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5_2:10304110-10304129 | None:intergenic | 45.0% | |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5_2:10304120-10304139 | Msa0756230:CDS | 45.0% |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5_2:10304121-10304140 | Msa0756230:CDS | 45.0% | |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5_2:10304173-10304192 | Msa0756230:CDS | 45.0% |
| !! | AACGACACGTATTTTGGACC+GGG | - | chr5_2:10304226-10304245 | Msa0756230:CDS | 45.0% |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5_2:10304272-10304291 | None:intergenic | 45.0% | |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5_2:10304278-10304297 | Msa0756230:intron | 45.0% |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5_2:10304347-10304366 | Msa0756230:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5_2:10304348-10304367 | Msa0756230:intron | 45.0% | |
| ATGGCTATGGAATGTGAGTG+TGG | - | chr5_2:10304383-10304402 | Msa0756230:intron | 45.0% | |
| TGGCTATGGAATGTGAGTGT+GGG | - | chr5_2:10304384-10304403 | Msa0756230:intron | 45.0% | |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr5_2:10304522-10304541 | Msa0756230:CDS | 45.0% |
| ATTGGACCAAGTCTATGCCA+GGG | - | chr5_2:10304540-10304559 | Msa0756230:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5_2:10304560-10304579 | None:intergenic | 45.0% | |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5_2:10303203-10303222 | Msa0756230:CDS | 50.0% | |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5_2:10303216-10303235 | None:intergenic | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5_2:10303247-10303266 | None:intergenic | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5_2:10303250-10303269 | None:intergenic | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5_2:10303250-10303269 | Msa0756230:CDS | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5_2:10303723-10303742 | Msa0756230:CDS | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5_2:10303724-10303743 | Msa0756230:CDS | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5_2:10303885-10303904 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5_2:10303951-10303970 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5_2:10304069-10304088 | None:intergenic | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5_2:10304074-10304093 | None:intergenic | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5_2:10304270-10304289 | Msa0756230:intron | 50.0% |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5_2:10304331-10304350 | Msa0756230:intron | 50.0% | |
| GGCTATGGAATGTGAGTGTG+GGG | - | chr5_2:10304385-10304404 | Msa0756230:intron | 50.0% | |
| GATTGGACCAAGTCTATGCC+AGG | - | chr5_2:10304539-10304558 | Msa0756230:CDS | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5_2:10304556-10304575 | Msa0756230:CDS | 50.0% |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5_2:10303203-10303222 | Msa0756230:CDS | 50.0% | |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5_2:10303216-10303235 | None:intergenic | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5_2:10303247-10303266 | None:intergenic | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5_2:10303250-10303269 | None:intergenic | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5_2:10303250-10303269 | Msa0756230:CDS | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5_2:10303723-10303742 | Msa0756230:CDS | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5_2:10303724-10303743 | Msa0756230:CDS | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5_2:10303885-10303904 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5_2:10303951-10303970 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5_2:10304069-10304088 | None:intergenic | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5_2:10304074-10304093 | None:intergenic | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5_2:10304270-10304289 | Msa0756230:intron | 50.0% |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5_2:10304331-10304350 | Msa0756230:intron | 50.0% | |
| GGCTATGGAATGTGAGTGTG+GGG | - | chr5_2:10304385-10304404 | Msa0756230:intron | 50.0% | |
| GATTGGACCAAGTCTATGCC+AGG | - | chr5_2:10304539-10304558 | Msa0756230:CDS | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5_2:10304556-10304575 | Msa0756230:CDS | 50.0% |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5_2:10303219-10303238 | Msa0756230:CDS | 55.0% |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5_2:10303220-10303239 | Msa0756230:CDS | 55.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5_2:10304093-10304112 | Msa0756230:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5_2:10304257-10304276 | None:intergenic | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5_2:10304259-10304278 | Msa0756230:intron | 55.0% |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5_2:10304311-10304330 | Msa0756230:intron | 55.0% | |
| GGAATGTGAGTGTGGGGTTG+TGG | - | chr5_2:10304391-10304410 | Msa0756230:intron | 55.0% | |
| GGAGATCCCTGGCATAGACT+TGG | + | chr5_2:10304549-10304568 | None:intergenic | 55.0% | |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5_2:10303219-10303238 | Msa0756230:CDS | 55.0% |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5_2:10303220-10303239 | Msa0756230:CDS | 55.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5_2:10304093-10304112 | Msa0756230:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5_2:10304257-10304276 | None:intergenic | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5_2:10304259-10304278 | Msa0756230:intron | 55.0% |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5_2:10304311-10304330 | Msa0756230:intron | 55.0% | |
| GGAATGTGAGTGTGGGGTTG+TGG | - | chr5_2:10304391-10304410 | Msa0756230:intron | 55.0% | |
| GGAGATCCCTGGCATAGACT+TGG | + | chr5_2:10304549-10304568 | None:intergenic | 55.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5_2:10303232-10303251 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5_2:10303233-10303252 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5_2:10303234-10303253 | None:intergenic | 60.0% |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5_2:10304237-10304256 | Msa0756230:intron | 60.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5_2:10304247-10304266 | None:intergenic | 60.0% | |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5_2:10304253-10304272 | Msa0756230:intron | 60.0% |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5_2:10304322-10304341 | Msa0756230:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5_2:10304400-10304419 | Msa0756230:intron | 60.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5_2:10303232-10303251 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5_2:10303233-10303252 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5_2:10303234-10303253 | None:intergenic | 60.0% |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5_2:10304237-10304256 | Msa0756230:intron | 60.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5_2:10304247-10304266 | None:intergenic | 60.0% | |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5_2:10304253-10304272 | Msa0756230:intron | 60.0% |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5_2:10304322-10304341 | Msa0756230:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5_2:10304400-10304419 | Msa0756230:intron | 60.0% | |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5_2:10304244-10304263 | Msa0756230:intron | 65.0% | |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5_2:10304244-10304263 | Msa0756230:intron | 65.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5_2:10304194-10304213 | Msa0756230:CDS | 75.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5_2:10304195-10304214 | Msa0756230:CDS | 75.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5_2:10304194-10304213 | Msa0756230:CDS | 75.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5_2:10304195-10304214 | Msa0756230:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10303089 | 10304595 | 10303089 | ID=Msa0756230;Name=Msa0756230 |
| chr5_2 | mRNA | 10303089 | 10304595 | 10303089 | ID=Msa0756230-mRNA-1;Parent=Msa0756230;Name=Msa0756230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|403 |
| chr5_2 | exon | 10304413 | 10304595 | 10304413 | ID=Msa0756230-mRNA-1:exon:4736;Parent=Msa0756230-mRNA-1 |
| chr5_2 | exon | 10304085 | 10304248 | 10304085 | ID=Msa0756230-mRNA-1:exon:4735;Parent=Msa0756230-mRNA-1 |
| chr5_2 | exon | 10303089 | 10303953 | 10303089 | ID=Msa0756230-mRNA-1:exon:4734;Parent=Msa0756230-mRNA-1 |
| chr5_2 | CDS | 10304413 | 10304595 | 10304413 | ID=Msa0756230-mRNA-1:cds;Parent=Msa0756230-mRNA-1 |
| chr5_2 | CDS | 10304085 | 10304248 | 10304085 | ID=Msa0756230-mRNA-1:cds;Parent=Msa0756230-mRNA-1 |
| chr5_2 | CDS | 10303089 | 10303953 | 10303089 | ID=Msa0756230-mRNA-1:cds;Parent=Msa0756230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
