AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714590 MtrunA17_Chr5g0401811 98.413 504 8 0 1 504 1 504 0.0 1018
Msa0714590 MtrunA17_Chr4g0053291 68.288 514 135 9 1 501 1 499 0.0 642
Msa0714590 MtrunA17_Chr3g0140951 27.986 293 160 9 151 434 188 438 3.83e-24 104
Msa0714590 MtrunA17_Chr3g0140001 29.532 342 178 15 113 432 131 431 1.09e-22 100
Msa0714590 MtrunA17_Chr7g0263751 26.168 214 122 5 147 359 101 279 5.95e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714590 AT5G67230.1 63.065 509 161 8 1 499 1 492 0.0 645
Msa0714590 AT4G36890.1 67.615 457 126 8 1 439 1 453 0.0 607
Msa0714590 AT1G27600.2 29.866 298 157 10 150 437 139 394 1.41e-25 108
Msa0714590 AT1G27600.1 29.866 298 157 10 150 437 139 394 1.41e-25 108
Msa0714590 AT2G37090.1 24.870 386 225 21 40 416 18 347 2.66e-13 71.6

Find 151 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAGACTGCTTCAATTAT+TGG 0.098423 5_1:-7204628 Msa0714590:CDS
TCTTTCATATGAACGGATTT+AGG 0.127596 5_1:+7201357 None:intergenic
TGATGCGTCTTCATGCTTTA+AGG 0.188622 5_1:-7204522 Msa0714590:intron
CTTCAATTCATTACGATATA+CGG 0.199782 5_1:-7203307 Msa0714590:CDS
AAGAATTTGAATTGATTAAA+AGG 0.205637 5_1:-7201514 Msa0714590:three_prime_UTR
GCTTCAATTATTGGAAAATC+TGG 0.212918 5_1:-7204619 Msa0714590:CDS
ACTTCTACTGCGTCTGGATC+TGG 0.214817 5_1:+7201666 None:intergenic
CTTTCATATGAACGGATTTA+GGG 0.237938 5_1:+7201358 None:intergenic
TTATTGGAAAATCTGGATTA+AGG 0.251089 5_1:-7204612 Msa0714590:CDS
TGCTTAATCAGCCTCGTTCT+CGG 0.309400 5_1:-7205075 Msa0714590:CDS
CCGACAAAATTTGAATGGTC+TGG 0.319336 5_1:-7203243 Msa0714590:CDS
ATGTCTATCCTCCCACAAAC+TGG 0.330083 5_1:+7204558 None:intergenic
TGATAGTAATATGCATAATA+TGG 0.344407 5_1:-7203514 Msa0714590:CDS
CCGTTCATATGAAAGATTAA+AGG 0.348115 5_1:-7201350 Msa0714590:three_prime_UTR
CGATAAGCCAGAGTGGATTA+AGG 0.360709 5_1:-7203181 Msa0714590:CDS
TGCAGCTGAAATTTCTTCAT+TGG 0.365838 5_1:-7203418 Msa0714590:CDS
TTCCACCGGAACAGTGATTC+CGG 0.373427 5_1:+7204963 None:intergenic
AACATCCTTCCAAAGTAATC+TGG 0.378146 5_1:+7203206 None:intergenic
GGGAGTTCAGGAGGAGAGTC+TGG 0.378580 5_1:+7201766 None:intergenic
TCTCTTACTTCTACTGCGTC+TGG 0.379222 5_1:+7201660 None:intergenic
CGACAAAATTTGAATGGTCT+GGG 0.388127 5_1:-7203242 Msa0714590:CDS
ATGGGTGATTGACCCTCCTT+TGG 0.392966 5_1:-7201821 Msa0714590:CDS
TTCATTACTTCCACAGGATC+CGG 0.393487 5_1:+7204847 None:intergenic
AATGAACAGAGATTGTTGTT+TGG 0.396717 5_1:-7204796 Msa0714590:CDS
AGGAGAAGCTGATGTCTTCT+TGG 0.397900 5_1:-7201494 Msa0714590:three_prime_UTR
GAACAAACCGAGATATGAAT+TGG 0.407021 5_1:-7201592 Msa0714590:exon
GATTAAGGATTATTCATGTT+GGG 0.408461 5_1:-7204597 Msa0714590:CDS
CGTTCATATGAAAGATTAAA+GGG 0.418193 5_1:-7201349 Msa0714590:three_prime_UTR
GATGCGGCCATGGCCGAATC+CGG 0.419202 5_1:+7204869 None:intergenic
CTCTGAAGCTGTTTGTTCTA+CGG 0.421760 5_1:+7205175 None:intergenic
GGAGACACGGGATCCGGATT+CGG 0.428474 5_1:-7204882 Msa0714590:CDS
GGCCATGGAGTGCGTTTCGA+TGG 0.429896 5_1:+7201787 None:intergenic
ACTTGGATTGTGGTTGAAGC+TGG 0.431515 5_1:-7204661 Msa0714590:CDS
GCGCCGGTGCCGGAGGTGAA+TGG 0.438005 5_1:+7204985 None:intergenic
AGAAAACAAGACGAGAAAAT+CGG 0.438239 5_1:+7205049 None:intergenic
AATTGTCGCCGGTGACTTAA+CGG 0.438702 5_1:+7205125 None:intergenic
CAACAGAATGTTCTAACAAA+CGG 0.440408 5_1:-7204937 Msa0714590:CDS
AACAGAATGTTCTAACAAAC+GGG 0.445176 5_1:-7204936 Msa0714590:CDS
TCAGAAAATGCCCAGTTTGT+GGG 0.445775 5_1:-7204569 Msa0714590:CDS
CGTATATCGTAATGAATTGA+AGG 0.445991 5_1:+7203308 None:intergenic
CTTCTACTGCGTCTGGATCT+GGG 0.446602 5_1:+7201667 None:intergenic
ATGAAATTCAGAGTGTGAAA+TGG 0.447404 5_1:-7203482 Msa0714590:CDS
GATTCGGCCATGGCCGCATC+CGG 0.448954 5_1:-7204866 Msa0714590:CDS
AGTGATTCCGGCGCCGGTGC+CGG 0.451879 5_1:+7204975 None:intergenic
ATCAGAAAATGCCCAGTTTG+TGG 0.453676 5_1:-7204570 Msa0714590:CDS
TGCAACGTTGGCTGTCTTGT+GGG 0.460080 5_1:-7201309 Msa0714590:three_prime_UTR
TGCGCTTTCATTACTTCCAC+AGG 0.460964 5_1:+7204841 None:intergenic
TTCACCTCCGGCACCGGCGC+CGG 0.461470 5_1:-7204982 Msa0714590:CDS
GGATTAAGGATTATTCATGT+TGG 0.462578 5_1:-7204598 Msa0714590:CDS
GAAATGGATCGGTGCTGTTT+CGG 0.465735 5_1:-7203466 Msa0714590:CDS
GGTGGAGGGACTCACAGAGC+AGG 0.467633 5_1:+7203009 None:intergenic
CGGCGCCGGAATCACTGTTC+CGG 0.471719 5_1:-7204968 Msa0714590:CDS
TGTTGAATTCCAGATTACTT+TGG 0.473184 5_1:-7203215 Msa0714590:CDS
CACCAAAGTGATTGGTGTAC+AGG 0.476382 5_1:-7201629 Msa0714590:CDS
CGCCGGTGACTTAACGGCGC+CGG 0.479709 5_1:+7205131 None:intergenic
CGCCGGCGCCGTTAAGTCAC+CGG 0.482259 5_1:-7205133 Msa0714590:CDS
TGTTCTAACAAACGGGAGTT+CGG 0.482950 5_1:-7204929 Msa0714590:CDS
ACAATCCAAGTCAGATCATA+AGG 0.485169 5_1:+7204673 None:intergenic
ACAGGATCCGGATGCGGCCA+TGG 0.485837 5_1:+7204859 None:intergenic
AACAAACGGGAGTTCGGTAG+TGG 0.486109 5_1:-7204923 Msa0714590:CDS
AAGCATGACACCAAAGTGAT+TGG 0.488095 5_1:-7201637 Msa0714590:CDS
CCTTTAATCTTTCATATGAA+CGG 0.491162 5_1:+7201350 None:intergenic
AGATGCACCAATTCATATCT+CGG 0.491651 5_1:+7201585 None:intergenic
TACACCGTTCCATTCACCTC+CGG 0.496125 5_1:-7204994 Msa0714590:CDS
TTATGATCTGACTTGGATTG+TGG 0.497071 5_1:-7204671 Msa0714590:CDS
AGAGGCTTAGATTCAGATAA+CGG 0.497985 5_1:-7205156 Msa0714590:CDS
GCAGGACCTTGCACCGGCAT+TGG 0.498839 5_1:+7203366 None:intergenic
TTCAATTCATTACGATATAC+GGG 0.499087 5_1:-7203306 Msa0714590:CDS
TGTTGCCGACAAAATTTGAA+TGG 0.500655 5_1:-7203248 Msa0714590:CDS
AAGGATCTTGATGCATTGGA+TGG 0.504502 5_1:-7203162 Msa0714590:CDS
CGGAACAGTGATTCCGGCGC+CGG 0.505384 5_1:+7204969 None:intergenic
CATCGAATAAAATTGAATAC+AGG 0.505551 5_1:+7201283 None:intergenic
GTTCCATTCACCTCCGGCAC+CGG 0.506995 5_1:-7204988 Msa0714590:CDS
GTGCAGTTTACATTGATGAC+CGG 0.511167 5_1:-7203278 Msa0714590:CDS
TTGCAACGTTGGCTGTCTTG+TGG 0.512397 5_1:-7201310 Msa0714590:three_prime_UTR
TGGTTGGGAGACACGGGATC+CGG 0.512530 5_1:-7204888 Msa0714590:CDS
GATTGTGAGAAAAGAGAAGC+TGG 0.516119 5_1:-7203559 Msa0714590:CDS
TTGTCGGCAACACTGGTGCC+CGG 0.518942 5_1:+7203259 None:intergenic
GATTAAGGATCTTGATGCAT+TGG 0.519612 5_1:-7203166 Msa0714590:CDS
ACCTTGCACCGGCATTGGCA+TGG 0.519908 5_1:+7203371 None:intergenic
TGGATCGGTGCTGTTTCGGT+TGG 0.520170 5_1:-7203462 Msa0714590:CDS
TGGAACGGTGTAAATATTAG+TGG 0.521470 5_1:+7205005 None:intergenic
GCCATGGAGTGCGTTTCGAT+GGG 0.536780 5_1:+7201788 None:intergenic
GGAGAAGAAGATGGTGGTGT+TGG 0.537405 5_1:+7205370 None:intergenic
ATTCAAATTCTTGTCGCAGA+AGG 0.537501 5_1:+7201525 None:intergenic
GTGCAAGGTCCTGCTTGTAA+TGG 0.539674 5_1:-7203357 Msa0714590:CDS
TTTCAAGCGATGCATTTGAC+TGG 0.539811 5_1:-7204721 Msa0714590:CDS
TGGCGAGTAGAGTCGTGGTT+GGG 0.540904 5_1:-7204903 Msa0714590:CDS
TCAGGAGGAGAGTCTGGCCA+TGG 0.544157 5_1:+7201772 None:intergenic
AGAGTCGTGGTTGGGAGACA+CGG 0.549723 5_1:-7204895 Msa0714590:CDS
TGAGGAAACCATGCCAATGC+CGG 0.551614 5_1:-7203379 Msa0714590:CDS
AGGATCTTGATGCATTGGAT+GGG 0.552743 5_1:-7203161 Msa0714590:CDS
ACCATGCCAATGCCGGTGCA+AGG 0.552760 5_1:-7203372 Msa0714590:CDS
GTGGCGAGTAGAGTCGTGGT+TGG 0.558097 5_1:-7204904 Msa0714590:CDS
CAGCTGCATCAACAGAATGA+AGG 0.558512 5_1:+7203433 None:intergenic
TCAAGATCCTTAATCCACTC+TGG 0.559323 5_1:+7203174 None:intergenic
CGCCGGAATCACTGTTCCGG+TGG 0.559732 5_1:-7204965 Msa0714590:CDS
AAGCAAGTTGGAGAAGAAGA+TGG 0.562027 5_1:+7205361 None:intergenic
TTGTAATGGTACTGATAAGT+TGG 0.564365 5_1:-7203343 Msa0714590:CDS
TTGTGCCTTATGATCTGACT+TGG 0.564918 5_1:-7204678 Msa0714590:CDS
ACGGGATCCGGATTCGGCCA+TGG 0.566818 5_1:-7204876 Msa0714590:CDS
TCATTAGATGGGAGTTCAGG+AGG 0.569861 5_1:+7201757 None:intergenic
TTGTGTTTATAAGAGAATGC+TGG 0.571085 5_1:-7201548 Msa0714590:three_prime_UTR
GAATTCCAGATTACTTTGGA+AGG 0.571302 5_1:-7203211 Msa0714590:CDS
TGCAGTTTACATTGATGACC+GGG 0.572154 5_1:-7203277 Msa0714590:CDS
ATGGTACTGATAAGTTGGTC+GGG 0.572519 5_1:-7203338 Msa0714590:CDS
GATTCCGGCGCCGGTGCCGG+AGG 0.573917 5_1:+7204978 None:intergenic
ATGGCCGCATCCGGATCCTG+TGG 0.574190 5_1:-7204857 Msa0714590:CDS
ACTTCCACAGGATCCGGATG+CGG 0.575433 5_1:+7204853 None:intergenic
AGACACGAATGCACATATGC+TGG 0.577405 5_1:+7201436 None:intergenic
ACATTCTGTTGAGTTTCCAC+CGG 0.578267 5_1:+7204949 None:intergenic
CGTAGAACAAACAGCTTCAG+AGG 0.580812 5_1:-7205174 Msa0714590:CDS
GACCTGTACACCAATCACTT+TGG 0.581284 5_1:+7201627 None:intergenic
TTAGATTCAGATAACGGCGC+CGG 0.583256 5_1:-7205150 Msa0714590:CDS
TGTGAAAGTAAGAAGCAAGT+TGG 0.583322 5_1:+7205349 None:intergenic
TCCCATCGAAACGCACTCCA+TGG 0.588526 5_1:-7201789 Msa0714590:CDS
CTTGATGCATTGGATGGGGA+TGG 0.588763 5_1:-7203156 Msa0714590:CDS
AATGGTACTGATAAGTTGGT+CGG 0.589439 5_1:-7203339 Msa0714590:CDS
TGGATTGTGGTTGAAGCTGG+TGG 0.591755 5_1:-7204658 Msa0714590:CDS
TGTCTATCCTCCCACAAACT+GGG 0.597037 5_1:+7204559 None:intergenic
GTGAGAAAAGAGAAGCTGGA+TGG 0.604430 5_1:-7203555 Msa0714590:CDS
GCAACCACCAAAGCAAAACA+TGG 0.606572 5_1:+7203061 None:intergenic
GTAGAACCACTAGGGAGTTG+TGG 0.607713 5_1:-7203087 Msa0714590:CDS
GTGGAAGTAATGAAAGCGCA+TGG 0.608289 5_1:-7204838 Msa0714590:CDS
GAGTCGTGGTTGGGAGACAC+GGG 0.613626 5_1:-7204894 Msa0714590:CDS
ACCTCTGTGGTAGAACCACT+AGG 0.613698 5_1:-7203096 Msa0714590:CDS
GGATCTTGATGCATTGGATG+GGG 0.614063 5_1:-7203160 Msa0714590:CDS
GTGGAGGGACTCACAGAGCA+GGG 0.618643 5_1:+7203010 None:intergenic
CAAGTTGGAGAAGAAGATGG+TGG 0.620394 5_1:+7205364 None:intergenic
GATGGGACTGTGATGTCCAA+AGG 0.622491 5_1:+7201805 None:intergenic
AAAATCGGAAGCCGAGAACG+AGG 0.625000 5_1:+7205064 None:intergenic
GGGACTGTGATGTCCAAAGG+AGG 0.626469 5_1:+7201808 None:intergenic
ATTCATTACGATATACGGGA+AGG 0.635243 5_1:-7203302 Msa0714590:CDS
TTACAAGCAGGACCTTGCAC+CGG 0.643021 5_1:+7203360 None:intergenic
GAAAATGCCCAGTTTGTGGG+AGG 0.647991 5_1:-7204566 Msa0714590:CDS
ACTAGCCAGAAAATTGTCGC+CGG 0.649362 5_1:+7205114 None:intergenic
CCTCTGTGGTAGAACCACTA+GGG 0.659169 5_1:-7203095 Msa0714590:CDS
TTATCAGTACCATTACAAGC+AGG 0.660972 5_1:+7203348 None:intergenic
GGTGCCGGAGGTGAATGGAA+CGG 0.663294 5_1:+7204990 None:intergenic
AGCATTCTCTTATAAACACA+AGG 0.671290 5_1:+7201550 None:intergenic
GGACTGTGATGTCCAAAGGA+GGG 0.672528 5_1:+7201809 None:intergenic
ATTCAGAGTGTGAAATGGAT+CGG 0.672674 5_1:-7203477 Msa0714590:CDS
TGAAAAGTCCTCACATACGT+TGG 0.684360 5_1:+7204739 None:intergenic
GGTAGTGGCGAGTAGAGTCG+TGG 0.693719 5_1:-7204908 Msa0714590:CDS
TTTGCTCAAGAGTACCTCTG+TGG 0.694643 5_1:-7203109 Msa0714590:CDS
TGGCGTCCACAACTCCCTAG+TGG 0.699177 5_1:+7203081 None:intergenic
GTACTCTTGAGCAAAGACAG+TGG 0.702361 5_1:+7203117 None:intergenic
TTGTGACACCAACGTATGTG+AGG 0.703517 5_1:-7204747 Msa0714590:CDS
GTACTGATAAGTTGGTCGGG+TGG 0.704370 5_1:-7203335 Msa0714590:CDS
ATGTTGACGATAAGCCAGAG+TGG 0.723393 5_1:-7203188 Msa0714590:CDS
CCCTAGTGGTTCTACCACAG+AGG 0.724372 5_1:+7203095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATAAAAAAAAAA+GGG + chr5_1:7203010-7203029 None:intergenic 0.0%
!! ATAAAAAAAATAAAAAAAAA+AGG + chr5_1:7203011-7203030 None:intergenic 0.0%
!! AAAAAAATAAAAAAAAAAGG+GGG + chr5_1:7203008-7203027 None:intergenic 10.0%
!! AAAAATGTAAAAGAAAAAAT+GGG + chr5_1:7205249-7205268 None:intergenic 10.0%
!! AAAAAATGTAAAAGAAAAAA+TGG + chr5_1:7205250-7205269 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTGTTTG+TGG + chr5_1:7201419-7201438 None:intergenic 15.0%
!!! TTTTACTTGATTTGTTATTA+TGG - chr5_1:7202180-7202199 Msa0714590:intron 15.0%
!!! TGATTTTAGTCTTAAATTTA+TGG - chr5_1:7202667-7202686 Msa0714590:intron 15.0%
!! AAGAATTTGAATTGATTAAA+AGG - chr5_1:7205137-7205156 Msa0714590:CDS 15.0%
!!! TTTTTTTTCCTTATTTTTCT+TGG - chr5_1:7205265-7205284 Msa0714590:five_prime_UTR 15.0%
!!! AAGTAAAAGCATAAACTAAA+AGG + chr5_1:7202168-7202187 None:intergenic 20.0%
!!! TGTAAAATTGATTTTTGTCA+TGG - chr5_1:7202591-7202610 Msa0714590:intron 20.0%
!!! TTGATTTTAACCATAAAAGT+GGG + chr5_1:7202745-7202764 None:intergenic 20.0%
!!! ATTGATTTTAACCATAAAAG+TGG + chr5_1:7202746-7202765 None:intergenic 20.0%
!! GTATTTAGTAATTAAGTCAA+AGG + chr5_1:7202911-7202930 None:intergenic 20.0%
!! TGATAGTAATATGCATAATA+TGG - chr5_1:7203137-7203156 Msa0714590:CDS 20.0%
!!! GTCAAACAATTCAAATTTTA+GGG + chr5_1:7203828-7203847 None:intergenic 20.0%
!!! TGTCAAACAATTCAAATTTT+AGG + chr5_1:7203829-7203848 None:intergenic 20.0%
!! ATTAAGATAGTCATGATTAT+AGG + chr5_1:7203941-7203960 None:intergenic 20.0%
!! ATAATCATGACTATCTTAAT+AGG - chr5_1:7203941-7203960 Msa0714590:intron 20.0%
!! AATGAAAGATTCAATTTATG+TGG - chr5_1:7204208-7204227 Msa0714590:intron 20.0%
!! ATGAAAGATTCAATTTATGT+GGG - chr5_1:7204209-7204228 Msa0714590:intron 20.0%
!! ATACAATTGGATATAATGAT+TGG - chr5_1:7204334-7204353 Msa0714590:intron 20.0%
!! TACAATTGGATATAATGATT+GGG - chr5_1:7204335-7204354 Msa0714590:intron 20.0%
!! GAAATCATTAACAATTGATT+TGG + chr5_1:7204455-7204474 None:intergenic 20.0%
!!! ATTTATTTCTAGGTTCTTAT+AGG - chr5_1:7204667-7204686 Msa0714590:CDS 20.0%
!! CAAATATGCAAATAAATACA+AGG + chr5_1:7204764-7204783 None:intergenic 20.0%
!!! CTTTTTCATTTTCATTAGAT+GGG + chr5_1:7204908-7204927 None:intergenic 20.0%
!!! ACTTTTTCATTTTCATTAGA+TGG + chr5_1:7204909-7204928 None:intergenic 20.0%
! TTATTGGAAAATCTGGATTA+AGG - chr5_1:7202039-7202058 Msa0714590:intron 25.0%
! GATTAAGGATTATTCATGTT+GGG - chr5_1:7202054-7202073 Msa0714590:intron 25.0%
!!! ATGTGAAAGGATTTTTTGTT+TGG - chr5_1:7202427-7202446 Msa0714590:intron 25.0%
! TGAATTGAATGACAAGTATA+AGG - chr5_1:7202467-7202486 Msa0714590:intron 25.0%
!!! TATTTGGTTTCAAGTTTCTA+GGG - chr5_1:7202548-7202567 Msa0714590:intron 25.0%
!!! AAATTGATTTTTGTCATGGT+TGG - chr5_1:7202595-7202614 Msa0714590:intron 25.0%
! AATGAATTCTACTTGAAGTT+AGG - chr5_1:7202634-7202653 Msa0714590:intron 25.0%
! TGAATGTATTTGTGTAAAAG+TGG + chr5_1:7202699-7202718 None:intergenic 25.0%
! CTTCAATTCATTACGATATA+CGG - chr5_1:7203344-7203363 Msa0714590:CDS 25.0%
! TTCAATTCATTACGATATAC+GGG - chr5_1:7203345-7203364 Msa0714590:CDS 25.0%
!! TGAAAACGTTTAGAATATAG+AGG + chr5_1:7203666-7203685 None:intergenic 25.0%
! ATTTGGCAAATGAAAATTAC+GGG + chr5_1:7203695-7203714 None:intergenic 25.0%
! CATTTGGCAAATGAAAATTA+CGG + chr5_1:7203696-7203715 None:intergenic 25.0%
! CATAGAAATAAGACATCATT+TGG + chr5_1:7203712-7203731 None:intergenic 25.0%
!!! TGTTTTTTACACTATCGTAT+TGG + chr5_1:7203758-7203777 None:intergenic 25.0%
!!! AAATTTTAGGGAGTAGTTTT+TGG + chr5_1:7203816-7203835 None:intergenic 25.0%
! ATTCTAAGCAATGTTCTTAT+GGG + chr5_1:7204080-7204099 None:intergenic 25.0%
! TATTCTAAGCAATGTTCTTA+TGG + chr5_1:7204081-7204100 None:intergenic 25.0%
! ATAACATTTCTACTCCAATA+TGG + chr5_1:7204112-7204131 None:intergenic 25.0%
! TATTGGAGTAGAAATGTTAT+AGG - chr5_1:7204112-7204131 Msa0714590:intron 25.0%
! CTTGAAAAAAATTCTGCAAA+GGG - chr5_1:7204181-7204200 Msa0714590:intron 25.0%
! ACTTTATGACTTTCTTATAC+AGG - chr5_1:7204237-7204256 Msa0714590:intron 25.0%
!!! TCTAACAAATCCTATTTTTC+TGG + chr5_1:7204392-7204411 None:intergenic 25.0%
!!! GATTTGTTAGATCAAAATGT+TGG - chr5_1:7204401-7204420 Msa0714590:intron 25.0%
!! TTAGATCAAAATGTTGGTAA+CGG - chr5_1:7204407-7204426 Msa0714590:intron 25.0%
!! CAAATTTTATGTCTGAGAAT+GGG - chr5_1:7204548-7204567 Msa0714590:CDS 25.0%
!! AAATTTTATGTCTGAGAATG+GGG - chr5_1:7204549-7204568 Msa0714590:CDS 25.0%
! TTACACTAATTGTAGAAGTA+GGG + chr5_1:7204590-7204609 None:intergenic 25.0%
! ATTACACTAATTGTAGAAGT+AGG + chr5_1:7204591-7204610 None:intergenic 25.0%
! ATGTTGTTAAAATGTGATCA+TGG - chr5_1:7204643-7204662 Msa0714590:CDS 25.0%
!! TGATCATGGAATTTATTTCT+AGG - chr5_1:7204657-7204676 Msa0714590:CDS 25.0%
!! TTTTGTACTTCAATTTTCGA+CGG - chr5_1:7204696-7204715 Msa0714590:CDS 25.0%
!!! TTTTTCCTTATTTTTCTTGG+AGG - chr5_1:7205268-7205287 Msa0714590:five_prime_UTR 25.0%
! CCTTTAATCTTTCATATGAA+CGG + chr5_1:7205304-7205323 None:intergenic 25.0%
! CGTTCATATGAAAGATTAAA+GGG - chr5_1:7205302-7205321 Msa0714590:five_prime_UTR 25.0%
! CATCGAATAAAATTGAATAC+AGG + chr5_1:7205371-7205390 None:intergenic 25.0%
! TTTTGTGTTTGTGGATGTTA+AGG + chr5_1:7201410-7201429 None:intergenic 30.0%
AGAAAACAAGACGAGAAAAT+CGG + chr5_1:7201605-7201624 None:intergenic 30.0%
CAACAGAATGTTCTAACAAA+CGG - chr5_1:7201714-7201733 Msa0714590:CDS 30.0%
AACAGAATGTTCTAACAAAC+GGG - chr5_1:7201715-7201734 Msa0714590:CDS 30.0%
! AATGAACAGAGATTGTTGTT+TGG - chr5_1:7201855-7201874 Msa0714590:intron 30.0%
!! TCACAACAATCACTTTTCTA+GGG + chr5_1:7201890-7201909 None:intergenic 30.0%
AATGAGACTGCTTCAATTAT+TGG - chr5_1:7202023-7202042 Msa0714590:intron 30.0%
GCTTCAATTATTGGAAAATC+TGG - chr5_1:7202032-7202051 Msa0714590:intron 30.0%
GGATTAAGGATTATTCATGT+TGG - chr5_1:7202053-7202072 Msa0714590:intron 30.0%
GATTTGCAGTAGAATCTTTA+TGG - chr5_1:7202216-7202235 Msa0714590:intron 30.0%
TGTTTGAATAATTAGTGTCG+CGG - chr5_1:7202244-7202263 Msa0714590:intron 30.0%
ATGATTGAATATGCCAAATG+TGG - chr5_1:7202314-7202333 Msa0714590:intron 30.0%
!! TGATTCTGTGAAGTTGATTT+TGG - chr5_1:7202386-7202405 Msa0714590:intron 30.0%
AGTGAATTGTTAGATGTGAA+AGG - chr5_1:7202414-7202433 Msa0714590:intron 30.0%
!! GTATTTGGTTTCAAGTTTCT+AGG - chr5_1:7202547-7202566 Msa0714590:intron 30.0%
CAAGTAGAATTCATTCTACA+AGG + chr5_1:7202629-7202648 None:intergenic 30.0%
!! TTACATTCAACCCACTTTTA+TGG - chr5_1:7202732-7202751 Msa0714590:intron 30.0%
GCATTACAAGGTTTCAAAAA+AGG + chr5_1:7202889-7202908 None:intergenic 30.0%
!! ATTAAGTCAAAGGCATTACA+AGG + chr5_1:7202901-7202920 None:intergenic 30.0%
CACAAGGAAAAATCAACAAA+AGG + chr5_1:7203063-7203082 None:intergenic 30.0%
!!! TTGTTGATTTTTCCTTGTGA+TGG - chr5_1:7203064-7203083 Msa0714590:CDS 30.0%
ATGAAATTCAGAGTGTGAAA+TGG - chr5_1:7203169-7203188 Msa0714590:CDS 30.0%
!! TCTTCATTGGTTCAAAAAGA+AGG - chr5_1:7203246-7203265 Msa0714590:CDS 30.0%
!! TTGTAATGGTACTGATAAGT+TGG - chr5_1:7203308-7203327 Msa0714590:CDS 30.0%
CGTATATCGTAATGAATTGA+AGG + chr5_1:7203346-7203365 None:intergenic 30.0%
TGTTGAATTCCAGATTACTT+TGG - chr5_1:7203436-7203455 Msa0714590:CDS 30.0%
! AAACGTTTAGAATATAGAGG+TGG + chr5_1:7203663-7203682 None:intergenic 30.0%
TAAGTAAGAACTACATAAGC+TGG + chr5_1:7204025-7204044 None:intergenic 30.0%
GCTTGAAAAAAATTCTGCAA+AGG - chr5_1:7204180-7204199 Msa0714590:intron 30.0%
ATCAGTCTCTAATTGTATGT+CGG - chr5_1:7204303-7204322 Msa0714590:intron 30.0%
AATTGGATATAATGATTGGG+TGG - chr5_1:7204338-7204357 Msa0714590:intron 30.0%
ATTGGATATAATGATTGGGT+GGG - chr5_1:7204339-7204358 Msa0714590:intron 30.0%
!!! AATCCTATTTTTCTGGAGTT+AGG + chr5_1:7204385-7204404 None:intergenic 30.0%
TCAATTGTTAATGATTTCCC+AGG - chr5_1:7204457-7204476 Msa0714590:intron 30.0%
CAATTGTTAATGATTTCCCA+GGG - chr5_1:7204458-7204477 Msa0714590:intron 30.0%
AATTGTTAATGATTTCCCAG+GGG - chr5_1:7204459-7204478 Msa0714590:intron 30.0%
! TGCTGTGTTCTTAATAGTTT+TGG + chr5_1:7204530-7204549 None:intergenic 30.0%
! GCAAATTTTATGTCTGAGAA+TGG - chr5_1:7204547-7204566 Msa0714590:CDS 30.0%
! AATTTTATGTCTGAGAATGG+GGG - chr5_1:7204550-7204569 Msa0714590:CDS 30.0%
AATTTGACATCATGTGTGTT+TGG - chr5_1:7204616-7204635 Msa0714590:CDS 30.0%
! TTTGTACTTCAATTTTCGAC+GGG - chr5_1:7204697-7204716 Msa0714590:CDS 30.0%
TACATAATCCATGCACTATT+TGG + chr5_1:7204727-7204746 None:intergenic 30.0%
GAAATAGCATCATATAGTCA+GGG + chr5_1:7204804-7204823 None:intergenic 30.0%
TGAAATAGCATCATATAGTC+AGG + chr5_1:7204805-7204824 None:intergenic 30.0%
AGCATTCTCTTATAAACACA+AGG + chr5_1:7205104-7205123 None:intergenic 30.0%
TTGTGTTTATAAGAGAATGC+TGG - chr5_1:7205103-7205122 Msa0714590:CDS 30.0%
! CTTTCATATGAACGGATTTA+GGG + chr5_1:7205296-7205315 None:intergenic 30.0%
! TCTTTCATATGAACGGATTT+AGG + chr5_1:7205297-7205316 None:intergenic 30.0%
CCGTTCATATGAAAGATTAA+AGG - chr5_1:7205301-7205320 Msa0714590:five_prime_UTR 30.0%
TGTGAAAGTAAGAAGCAAGT+TGG + chr5_1:7201305-7201324 None:intergenic 35.0%
AGAGGCTTAGATTCAGATAA+CGG - chr5_1:7201495-7201514 Msa0714590:three_prime_UTR 35.0%
!!! ATTTTCTGGCTAGTACTTCA+CGG - chr5_1:7201546-7201565 Msa0714590:three_prime_UTR 35.0%
TGGAACGGTGTAAATATTAG+TGG + chr5_1:7201649-7201668 None:intergenic 35.0%
!! GTCACAACAATCACTTTTCT+AGG + chr5_1:7201891-7201910 None:intergenic 35.0%
ACAATCCAAGTCAGATCATA+AGG + chr5_1:7201981-7202000 None:intergenic 35.0%
!! TTATGATCTGACTTGGATTG+TGG - chr5_1:7201980-7201999 Msa0714590:intron 35.0%
! AATTAGTGTCGCGGTTTTTA+TGG - chr5_1:7202253-7202272 Msa0714590:intron 35.0%
CATGATTCTCCGCAATATAA+GGG + chr5_1:7202297-7202316 None:intergenic 35.0%
TCATGATTCTCCGCAATATA+AGG + chr5_1:7202298-7202317 None:intergenic 35.0%
AACACACACTAAACCACATT+TGG + chr5_1:7202330-7202349 None:intergenic 35.0%
AATGTGGTTTAGTGTGTGTT+TGG - chr5_1:7202330-7202349 Msa0714590:intron 35.0%
!! TTCTAGCTTCAAGTCAGAAT+CGG - chr5_1:7202523-7202542 Msa0714590:intron 35.0%
TTCACAACAAGACAACAATC+AGG + chr5_1:7202866-7202885 None:intergenic 35.0%
!! ATTTTTCCTTGTGATGGAAC+AGG - chr5_1:7203070-7203089 Msa0714590:CDS 35.0%
ATTCAGAGTGTGAAATGGAT+CGG - chr5_1:7203174-7203193 Msa0714590:CDS 35.0%
TGCAGCTGAAATTTCTTCAT+TGG - chr5_1:7203233-7203252 Msa0714590:CDS 35.0%
TTATCAGTACCATTACAAGC+AGG + chr5_1:7203306-7203325 None:intergenic 35.0%
!! AATGGTACTGATAAGTTGGT+CGG - chr5_1:7203312-7203331 Msa0714590:CDS 35.0%
ATTCATTACGATATACGGGA+AGG - chr5_1:7203349-7203368 Msa0714590:CDS 35.0%
TGTTGCCGACAAAATTTGAA+TGG - chr5_1:7203403-7203422 Msa0714590:CDS 35.0%
! CCAGACCATTCAAATTTTGT+CGG + chr5_1:7203411-7203430 None:intergenic 35.0%
CGACAAAATTTGAATGGTCT+GGG - chr5_1:7203409-7203428 Msa0714590:CDS 35.0%
GAATTCCAGATTACTTTGGA+AGG - chr5_1:7203440-7203459 Msa0714590:CDS 35.0%
AACATCCTTCCAAAGTAATC+TGG + chr5_1:7203448-7203467 None:intergenic 35.0%
GATTAAGGATCTTGATGCAT+TGG - chr5_1:7203485-7203504 Msa0714590:CDS 35.0%
! GTTTAGAATATAGAGGTGGA+GGG + chr5_1:7203659-7203678 None:intergenic 35.0%
!!! GTTTTTGGCTTTGAGCTTTT+GGG + chr5_1:7203801-7203820 None:intergenic 35.0%
!!! AGTTTTTGGCTTTGAGCTTT+TGG + chr5_1:7203802-7203821 None:intergenic 35.0%
! GTAACTGCTGAGTTTTCTTT+CGG + chr5_1:7203897-7203916 None:intergenic 35.0%
AGAATACACTGCTACCATAT+TGG - chr5_1:7204095-7204114 Msa0714590:intron 35.0%
TACTGTCTAGTGATAATAGC+TGG - chr5_1:7204158-7204177 Msa0714590:intron 35.0%
TTACTATACAATCAGCCTGT+AGG + chr5_1:7204263-7204282 None:intergenic 35.0%
TCAGTCTCTAATTGTATGTC+GGG - chr5_1:7204304-7204323 Msa0714590:intron 35.0%
GTCGGGTTAATTGATACAAT+TGG - chr5_1:7204321-7204340 Msa0714590:intron 35.0%
GCTGAAGTCTATGATCAAAT+AGG + chr5_1:7204433-7204452 None:intergenic 35.0%
TTTCTAGGTTCTTATAGGTC+AGG - chr5_1:7204672-7204691 Msa0714590:CDS 35.0%
CATCATATAGTCAGGGATAT+AGG + chr5_1:7204797-7204816 None:intergenic 35.0%
!! ATGATGCTATTTCATGCAGA+TGG - chr5_1:7204811-7204830 Msa0714590:CDS 35.0%
!! TGATGCTATTTCATGCAGAT+GGG - chr5_1:7204812-7204831 Msa0714590:CDS 35.0%
! TTTTCATTAGATGGGAGTTC+AGG + chr5_1:7204900-7204919 None:intergenic 35.0%
GAACAAACCGAGATATGAAT+TGG - chr5_1:7205059-7205078 Msa0714590:CDS 35.0%
AGATGCACCAATTCATATCT+CGG + chr5_1:7205069-7205088 None:intergenic 35.0%
ATTCAAATTCTTGTCGCAGA+AGG + chr5_1:7205129-7205148 None:intergenic 35.0%
! ATCTGTCGAGAAGCTTTTTA+TGG - chr5_1:7205188-7205207 Msa0714590:CDS 35.0%
!!! TCAACTTAGTTTTGCAACGT+TGG - chr5_1:7205330-7205349 Msa0714590:five_prime_UTR 35.0%
!!! GTTGGCTTTTTGTAGTTTGG+TGG + chr5_1:7201266-7201285 None:intergenic 40.0%
!!! GGTGTTGGCTTTTTGTAGTT+TGG + chr5_1:7201269-7201288 None:intergenic 40.0%
! AAGCAAGTTGGAGAAGAAGA+TGG + chr5_1:7201293-7201312 None:intergenic 40.0%
!! CTCTGAAGCTGTTTGTTCTA+CGG + chr5_1:7201479-7201498 None:intergenic 40.0%
ACATTCTGTTGAGTTTCCAC+CGG + chr5_1:7201705-7201724 None:intergenic 40.0%
TGTTCTAACAAACGGGAGTT+CGG - chr5_1:7201722-7201741 Msa0714590:CDS 40.0%
TTCATTACTTCCACAGGATC+CGG + chr5_1:7201807-7201826 None:intergenic 40.0%
TGAAAAGTCCTCACATACGT+TGG + chr5_1:7201915-7201934 None:intergenic 40.0%
TTTCAAGCGATGCATTTGAC+TGG - chr5_1:7201930-7201949 Msa0714590:intron 40.0%
TTGTGCCTTATGATCTGACT+TGG - chr5_1:7201973-7201992 Msa0714590:intron 40.0%
ATCAGAAAATGCCCAGTTTG+TGG - chr5_1:7202081-7202100 Msa0714590:intron 40.0%
TCAGAAAATGCCCAGTTTGT+GGG - chr5_1:7202082-7202101 Msa0714590:intron 40.0%
TGATGCGTCTTCATGCTTTA+AGG - chr5_1:7202129-7202148 Msa0714590:intron 40.0%
TGTCACGATCCCTTATATTG+CGG - chr5_1:7202285-7202304 Msa0714590:intron 40.0%
!! TTAGTGTGTGTTTGGTTCTG+TGG - chr5_1:7202338-7202357 Msa0714590:intron 40.0%
CAAGTCAGAATCGGTGTATT+TGG - chr5_1:7202532-7202551 Msa0714590:intron 40.0%
!!! AATTTTGCGTGCTCTAGAAG+TGG - chr5_1:7202783-7202802 Msa0714590:intron 40.0%
GATTGTGAGAAAAGAGAAGC+TGG - chr5_1:7203092-7203111 Msa0714590:CDS 40.0%
GGTTCAAAAAGAAGGAGATG+AGG - chr5_1:7203254-7203273 Msa0714590:CDS 40.0%
!! ATGGTACTGATAAGTTGGTC+GGG - chr5_1:7203313-7203332 Msa0714590:CDS 40.0%
! GTGCAGTTTACATTGATGAC+CGG - chr5_1:7203373-7203392 Msa0714590:CDS 40.0%
! TGCAGTTTACATTGATGACC+GGG - chr5_1:7203374-7203393 Msa0714590:CDS 40.0%
! TCAAATTTTGTCGGCAACAC+TGG + chr5_1:7203402-7203421 None:intergenic 40.0%
CCGACAAAATTTGAATGGTC+TGG - chr5_1:7203408-7203427 Msa0714590:CDS 40.0%
TCAAGATCCTTAATCCACTC+TGG + chr5_1:7203480-7203499 None:intergenic 40.0%
AAGGATCTTGATGCATTGGA+TGG - chr5_1:7203489-7203508 Msa0714590:CDS 40.0%
AGGATCTTGATGCATTGGAT+GGG - chr5_1:7203490-7203509 Msa0714590:CDS 40.0%
!! ATGTTTTGCTTTGGTGGTTG+CGG - chr5_1:7203592-7203611 Msa0714590:intron 40.0%
! CGTTTAGAATATAGAGGTGG+AGG + chr5_1:7203660-7203679 None:intergenic 40.0%
! CTCAGCAGTTACAGTTTTTG+TGG - chr5_1:7203905-7203924 Msa0714590:intron 40.0%
TGGGCATCATGTGATGATAT+AGG - chr5_1:7203986-7204005 Msa0714590:intron 40.0%
TTACTTAAGCACCCACTACA+AGG - chr5_1:7204038-7204057 Msa0714590:intron 40.0%
TTATGGGTCAATGTGACTAG+AGG + chr5_1:7204064-7204083 None:intergenic 40.0%
ACTTTCTTATACAGGCCTAC+AGG - chr5_1:7204245-7204264 Msa0714590:intron 40.0%
ATAATGATTGGGTGGGTGAT+AGG - chr5_1:7204346-7204365 Msa0714590:intron 40.0%
GCACCTAACTCCAGAAAAAT+AGG - chr5_1:7204379-7204398 Msa0714590:intron 40.0%
!! AATGAAAAAGTGTTCGCTGC+AGG - chr5_1:7204918-7204937 Msa0714590:CDS 40.0%
AAGCATGACACCAAAGTGAT+TGG - chr5_1:7205014-7205033 Msa0714590:CDS 40.0%
! GTCGAGAAGCTTTTTATGGT+TGG - chr5_1:7205192-7205211 Msa0714590:CDS 40.0%
!! GGCTTTTTGTAGTTTGGTGG+TGG + chr5_1:7201263-7201282 None:intergenic 45.0%
! CAAGTTGGAGAAGAAGATGG+TGG + chr5_1:7201290-7201309 None:intergenic 45.0%
CGTAGAACAAACAGCTTCAG+AGG - chr5_1:7201477-7201496 Msa0714590:three_prime_UTR 45.0%
! TTAGATTCAGATAACGGCGC+CGG - chr5_1:7201501-7201520 Msa0714590:three_prime_UTR 45.0%
AATTGTCGCCGGTGACTTAA+CGG + chr5_1:7201529-7201548 None:intergenic 45.0%
ACTAGCCAGAAAATTGTCGC+CGG + chr5_1:7201540-7201559 None:intergenic 45.0%
TGCTTAATCAGCCTCGTTCT+CGG - chr5_1:7201576-7201595 Msa0714590:three_prime_UTR 45.0%
TGCGCTTTCATTACTTCCAC+AGG + chr5_1:7201813-7201832 None:intergenic 45.0%
! GTGGAAGTAATGAAAGCGCA+TGG - chr5_1:7201813-7201832 Msa0714590:CDS 45.0%
TTGTGACACCAACGTATGTG+AGG - chr5_1:7201904-7201923 Msa0714590:intron 45.0%
ACTTGGATTGTGGTTGAAGC+TGG - chr5_1:7201990-7202009 Msa0714590:intron 45.0%
TGTCTATCCTCCCACAAACT+GGG + chr5_1:7202095-7202114 None:intergenic 45.0%
ATGTCTATCCTCCCACAAAC+TGG + chr5_1:7202096-7202115 None:intergenic 45.0%
! AGGGTCAAAGTCGATTCTAG+AGG - chr5_1:7202567-7202586 Msa0714590:intron 45.0%
CACAATCCTGTTCCATCACA+AGG + chr5_1:7203079-7203098 None:intergenic 45.0%
GTGAGAAAAGAGAAGCTGGA+TGG - chr5_1:7203096-7203115 Msa0714590:CDS 45.0%
!! GAAATGGATCGGTGCTGTTT+CGG - chr5_1:7203185-7203204 Msa0714590:CDS 45.0%
CAGCTGCATCAACAGAATGA+AGG + chr5_1:7203221-7203240 None:intergenic 45.0%
ATGTTGACGATAAGCCAGAG+TGG - chr5_1:7203463-7203482 Msa0714590:CDS 45.0%
!! CGATAAGCCAGAGTGGATTA+AGG - chr5_1:7203470-7203489 Msa0714590:CDS 45.0%
GGATCTTGATGCATTGGATG+GGG - chr5_1:7203491-7203510 Msa0714590:CDS 45.0%
GTACTCTTGAGCAAAGACAG+TGG + chr5_1:7203537-7203556 None:intergenic 45.0%
!! TTTGCTCAAGAGTACCTCTG+TGG - chr5_1:7203542-7203561 Msa0714590:CDS 45.0%
GCAACCACCAAAGCAAAACA+TGG + chr5_1:7203593-7203612 None:intergenic 45.0%
!! TGTTTTGCTTTGGTGGTTGC+GGG - chr5_1:7203593-7203612 Msa0714590:intron 45.0%
!!! TTGGCTTTGAGCTTTTGGGT+GGG + chr5_1:7203797-7203816 None:intergenic 45.0%
!!! TTTGGCTTTGAGCTTTTGGG+TGG + chr5_1:7203798-7203817 None:intergenic 45.0%
! TAGCTGCATGCACTGATACT+TGG - chr5_1:7203966-7203985 Msa0714590:intron 45.0%
! AGCTGCATGCACTGATACTT+GGG - chr5_1:7203967-7203986 Msa0714590:intron 45.0%
!! TTTCTGGAGTTAGGTGCTAC+TGG + chr5_1:7204376-7204395 None:intergenic 45.0%
AAATCCAAGCTGTACCCAGA+AGG + chr5_1:7204495-7204514 None:intergenic 45.0%
TTATGTCTGAGAATGGGGGA+AGG - chr5_1:7204554-7204573 Msa0714590:CDS 45.0%
TATGTCTGAGAATGGGGGAA+GGG - chr5_1:7204555-7204574 Msa0714590:CDS 45.0%
TAATTGTAGAAGTAGGGCCC+TGG + chr5_1:7204584-7204603 None:intergenic 45.0%
TCATTAGATGGGAGTTCAGG+AGG + chr5_1:7204897-7204916 None:intergenic 45.0%
TCTCTTACTTCTACTGCGTC+TGG + chr5_1:7204994-7205013 None:intergenic 45.0%
CACCAAAGTGATTGGTGTAC+AGG - chr5_1:7205022-7205041 Msa0714590:CDS 45.0%
GACCTGTACACCAATCACTT+TGG + chr5_1:7205027-7205046 None:intergenic 45.0%
AGGAGAAGCTGATGTCTTCT+TGG - chr5_1:7205157-7205176 Msa0714590:CDS 45.0%
AGACACGAATGCACATATGC+TGG + chr5_1:7205218-7205237 None:intergenic 45.0%
GGGCACCTCCAAGAAAAATA+AGG + chr5_1:7205276-7205295 None:intergenic 45.0%
!! AAAAAAAATAAAAAAAAAAG+GGG + chr5_1:7203009-7203028 None:intergenic 5.0%
! GGAGAAGAAGATGGTGGTGT+TGG + chr5_1:7201284-7201303 None:intergenic 50.0%
! AGTCACCGGCGACAATTTTC+TGG - chr5_1:7201532-7201551 Msa0714590:three_prime_UTR 50.0%
AAAATCGGAAGCCGAGAACG+AGG + chr5_1:7201590-7201609 None:intergenic 50.0%
TACACCGTTCCATTCACCTC+CGG - chr5_1:7201657-7201676 Msa0714590:CDS 50.0%
TTCCACCGGAACAGTGATTC+CGG + chr5_1:7201691-7201710 None:intergenic 50.0%
AACAAACGGGAGTTCGGTAG+TGG - chr5_1:7201728-7201747 Msa0714590:CDS 50.0%
TGGATTGTGGTTGAAGCTGG+TGG - chr5_1:7201993-7202012 Msa0714590:intron 50.0%
GAAAATGCCCAGTTTGTGGG+AGG - chr5_1:7202085-7202104 Msa0714590:intron 50.0%
TGAGGAAACCATGCCAATGC+CGG - chr5_1:7203272-7203291 Msa0714590:CDS 50.0%
TTACAAGCAGGACCTTGCAC+CGG + chr5_1:7203294-7203313 None:intergenic 50.0%
GTGCAAGGTCCTGCTTGTAA+TGG - chr5_1:7203294-7203313 Msa0714590:CDS 50.0%
!! GTACTGATAAGTTGGTCGGG+TGG - chr5_1:7203316-7203335 Msa0714590:CDS 50.0%
CTTGATGCATTGGATGGGGA+TGG - chr5_1:7203495-7203514 Msa0714590:CDS 50.0%
ACCTCTGTGGTAGAACCACT+AGG - chr5_1:7203555-7203574 Msa0714590:CDS 50.0%
CCTCTGTGGTAGAACCACTA+GGG - chr5_1:7203556-7203575 Msa0714590:CDS 50.0%
GTAGAACCACTAGGGAGTTG+TGG - chr5_1:7203564-7203583 Msa0714590:intron 50.0%
! GTGGACGCCATGTTTTGCTT+TGG - chr5_1:7203583-7203602 Msa0714590:intron 50.0%
! GACGCCATGTTTTGCTTTGG+TGG - chr5_1:7203586-7203605 Msa0714590:intron 50.0%
!! CTTTGAGCTTTTGGGTGGGT+TGG + chr5_1:7203793-7203812 None:intergenic 50.0%
! GTGACTAGAGGCCTTGTAGT+GGG + chr5_1:7204052-7204071 None:intergenic 50.0%
! TGTGACTAGAGGCCTTGTAG+TGG + chr5_1:7204053-7204072 None:intergenic 50.0%
! GATTTCCCAGGGGTATGTTC+CGG - chr5_1:7204469-7204488 Msa0714590:intron 50.0%
ATGTCTGAGAATGGGGGAAG+GGG - chr5_1:7204556-7204575 Msa0714590:CDS 50.0%
CGGGTTGTCCAAATAGTGCA+TGG - chr5_1:7204716-7204735 Msa0714590:CDS 50.0%
ATGGGTGATTGACCCTCCTT+TGG - chr5_1:7204830-7204849 Msa0714590:CDS 50.0%
GGACTGTGATGTCCAAAGGA+GGG + chr5_1:7204845-7204864 None:intergenic 50.0%
GATGGGACTGTGATGTCCAA+AGG + chr5_1:7204849-7204868 None:intergenic 50.0%
CTTCTACTGCGTCTGGATCT+GGG + chr5_1:7204987-7205006 None:intergenic 50.0%
ACTTCTACTGCGTCTGGATC+TGG + chr5_1:7204988-7205007 None:intergenic 50.0%
! TTGCAACGTTGGCTGTCTTG+TGG - chr5_1:7205341-7205360 Msa0714590:five_prime_UTR 50.0%
! TGCAACGTTGGCTGTCTTGT+GGG - chr5_1:7205342-7205361 Msa0714590:five_prime_UTR 50.0%
TGGCGAGTAGAGTCGTGGTT+GGG - chr5_1:7201748-7201767 Msa0714590:CDS 55.0%
AGAGTCGTGGTTGGGAGACA+CGG - chr5_1:7201756-7201775 Msa0714590:CDS 55.0%
ACTTCCACAGGATCCGGATG+CGG + chr5_1:7201801-7201820 None:intergenic 55.0%
!! TGGATCGGTGCTGTTTCGGT+TGG - chr5_1:7203189-7203208 Msa0714590:CDS 55.0%
! CCCTAGTGGTTCTACCACAG+AGG + chr5_1:7203559-7203578 None:intergenic 55.0%
GGGACTGTGATGTCCAAAGG+AGG + chr5_1:7204846-7204865 None:intergenic 55.0%
TCCCATCGAAACGCACTCCA+TGG - chr5_1:7204862-7204881 Msa0714590:CDS 55.0%
GCCATGGAGTGCGTTTCGAT+GGG + chr5_1:7204866-7204885 None:intergenic 55.0%
! GGTGCCGGAGGTGAATGGAA+CGG + chr5_1:7201664-7201683 None:intergenic 60.0%
GTTCCATTCACCTCCGGCAC+CGG - chr5_1:7201663-7201682 Msa0714590:CDS 60.0%
! GGTAGTGGCGAGTAGAGTCG+TGG - chr5_1:7201743-7201762 Msa0714590:CDS 60.0%
GTGGCGAGTAGAGTCGTGGT+TGG - chr5_1:7201747-7201766 Msa0714590:CDS 60.0%
GAGTCGTGGTTGGGAGACAC+GGG - chr5_1:7201757-7201776 Msa0714590:CDS 60.0%
TGGTTGGGAGACACGGGATC+CGG - chr5_1:7201763-7201782 Msa0714590:CDS 60.0%
GGAGACACGGGATCCGGATT+CGG - chr5_1:7201769-7201788 Msa0714590:CDS 60.0%
ACCATGCCAATGCCGGTGCA+AGG - chr5_1:7203279-7203298 Msa0714590:CDS 60.0%
!! ACCTTGCACCGGCATTGGCA+TGG + chr5_1:7203283-7203302 None:intergenic 60.0%
TTGTCGGCAACACTGGTGCC+CGG + chr5_1:7203395-7203414 None:intergenic 60.0%
TGGCGTCCACAACTCCCTAG+TGG + chr5_1:7203573-7203592 None:intergenic 60.0%
GTGGAGGGACTCACAGAGCA+GGG + chr5_1:7203644-7203663 None:intergenic 60.0%
!!! GCTTTTGGGTGGGTTGGCGT+TGG + chr5_1:7203787-7203806 None:intergenic 60.0%
GAAGGCCGGAACATACCCCT+GGG + chr5_1:7204477-7204496 None:intergenic 60.0%
AGAAGGCCGGAACATACCCC+TGG + chr5_1:7204478-7204497 None:intergenic 60.0%
! AGGGGTATGTTCCGGCCTTC+TGG - chr5_1:7204477-7204496 Msa0714590:intron 60.0%
GGGGTATGTTCCGGCCTTCT+GGG - chr5_1:7204478-7204497 Msa0714590:intron 60.0%
CCAAGCTGTACCCAGAAGGC+CGG + chr5_1:7204491-7204510 None:intergenic 60.0%
GGCCATGGAGTGCGTTTCGA+TGG + chr5_1:7204867-7204886 None:intergenic 60.0%
TCAGGAGGAGAGTCTGGCCA+TGG + chr5_1:7204882-7204901 None:intergenic 60.0%
GGGAGTTCAGGAGGAGAGTC+TGG + chr5_1:7204888-7204907 None:intergenic 60.0%
CGGAACAGTGATTCCGGCGC+CGG + chr5_1:7201685-7201704 None:intergenic 65.0%
! CGGCGCCGGAATCACTGTTC+CGG - chr5_1:7201683-7201702 Msa0714590:CDS 65.0%
CGCCGGAATCACTGTTCCGG+TGG - chr5_1:7201686-7201705 Msa0714590:CDS 65.0%
ACGGGATCCGGATTCGGCCA+TGG - chr5_1:7201775-7201794 Msa0714590:CDS 65.0%
GATGCGGCCATGGCCGAATC+CGG + chr5_1:7201785-7201804 None:intergenic 65.0%
GATTCGGCCATGGCCGCATC+CGG - chr5_1:7201785-7201804 Msa0714590:CDS 65.0%
ACAGGATCCGGATGCGGCCA+TGG + chr5_1:7201795-7201814 None:intergenic 65.0%
ATGGCCGCATCCGGATCCTG+TGG - chr5_1:7201794-7201813 Msa0714590:CDS 65.0%
! GCAGGACCTTGCACCGGCAT+TGG + chr5_1:7203288-7203307 None:intergenic 65.0%
GGTGGAGGGACTCACAGAGC+AGG + chr5_1:7203645-7203664 None:intergenic 65.0%
CCGGCCTTCTGGGTACAGCT+TGG - chr5_1:7204488-7204507 Msa0714590:intron 65.0%
!! AGAATGGGGGAAGGGGTGCC+AGG - chr5_1:7204563-7204582 Msa0714590:CDS 65.0%
!! GAATGGGGGAAGGGGTGCCA+GGG - chr5_1:7204564-7204583 Msa0714590:CDS 65.0%
CGCCGGCGCCGTTAAGTCAC+CGG - chr5_1:7201518-7201537 Msa0714590:three_prime_UTR 70.0%
CGCCGGTGACTTAACGGCGC+CGG + chr5_1:7201523-7201542 None:intergenic 70.0%
!! AGTGATTCCGGCGCCGGTGC+CGG + chr5_1:7201679-7201698 None:intergenic 70.0%
! GCGCCGGTGCCGGAGGTGAA+TGG + chr5_1:7201669-7201688 None:intergenic 75.0%
!! TTCACCTCCGGCACCGGCGC+CGG - chr5_1:7201669-7201688 Msa0714590:CDS 75.0%
!!! GATTCCGGCGCCGGTGCCGG+AGG + chr5_1:7201676-7201695 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 7201254 7205419 7201254 ID=Msa0714590;Name=Msa0714590
chr5_1 mRNA 7201254 7205419 7201254 ID=Msa0714590-mRNA-1;Parent=Msa0714590;Name=Msa0714590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=187|1|1|1|1|1|3|343|504
chr5_1 exon 7201254 7201843 7201254 ID=Msa0714590-mRNA-1:exon:3038;Parent=Msa0714590-mRNA-1
chr5_1 exon 7203024 7203581 7203024 ID=Msa0714590-mRNA-1:exon:3037;Parent=Msa0714590-mRNA-1
chr5_1 exon 7204523 7205419 7204523 ID=Msa0714590-mRNA-1:exon:3036;Parent=Msa0714590-mRNA-1
chr5_1 five_prime_UTR 7205233 7205419 7205233 ID=Msa0714590-mRNA-1:five_prime_utr;Parent=Msa0714590-mRNA-1
chr5_1 CDS 7204523 7205232 7204523 ID=Msa0714590-mRNA-1:cds;Parent=Msa0714590-mRNA-1
chr5_1 CDS 7203024 7203581 7203024 ID=Msa0714590-mRNA-1:cds;Parent=Msa0714590-mRNA-1
chr5_1 CDS 7201597 7201843 7201597 ID=Msa0714590-mRNA-1:cds;Parent=Msa0714590-mRNA-1
chr5_1 three_prime_UTR 7201254 7201596 7201254 ID=Msa0714590-mRNA-1:three_prime_utr;Parent=Msa0714590-mRNA-1
Gene Sequence

>Msa0714590

ATGAAGCTCTCAACATTACAACAAAGTTACATCAACCGTAGAACAAACAGCTTCAGAGGCTTAGATTCAGATAACGGCGCCGGCGCCGTTAAGTCACCGGCGACAATTTTCTGGCTAGTACTTCACGGTGTTTGCTGCTTAATCAGCCTCGTTCTCGGCTTCCGATTTTCTCGTCTTGTTTTCTTCTTTCTCTTTTCAACTTCATCCACTAATATTTACACCGTTCCATTCACCTCCGGCACCGGCGCCGGAATCACTGTTCCGGTGGAAACTCAACAGAATGTTCTAACAAACGGGAGTTCGGTAGTGGCGAGTAGAGTCGTGGTTGGGAGACACGGGATCCGGATTCGGCCATGGCCGCATCCGGATCCTGTGGAAGTAATGAAAGCGCATGGAATAATCTCTAGAGTTCAAAATGAACAGAGATTGTTGTTTGGAGTGAAGAACCCTAGAAAAGTGATTGTTGTGACACCAACGTATGTGAGGACTTTTCAAGCGATGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTGCCTTATGATCTGACTTGGATTGTGGTTGAAGCTGGTGGTGTTACTAATGAGACTGCTTCAATTATTGGAAAATCTGGATTAAGGATTATTCATGTTGGGTTTAATCAGAAAATGCCCAGTTTGTGGGAGGATAGACATAAAGTTGAATCTTTGATGCGTCTTCATGCTTTAAGGATTGTGAGAAAAGAGAAGCTGGATGGAATTGTGATGTTTGCTGATGATAGTAATATGCATAATATGGAGCTGTTTGATGAAATTCAGAGTGTGAAATGGATCGGTGCTGTTTCGGTTGGAATACTCCTTCATTCTGTTGATGCAGCTGAAATTTCTTCATTGGTTCAAAAAGAAGGAGATGAGGAAACCATGCCAATGCCGGTGCAAGGTCCTGCTTGTAATGGTACTGATAAGTTGGTCGGGTGGCACACCTTCAATTCATTACGATATACGGGAAGGCGTGCAGTTTACATTGATGACCGGGCACCAGTGTTGCCGACAAAATTTGAATGGTCTGGGTTTGTGTTGAATTCCAGATTACTTTGGAAGGATGTTGACGATAAGCCAGAGTGGATTAAGGATCTTGATGCATTGGATGGGGATGGTGAGAAGATAGAGAGTCCACTGTCTTTGCTCAAGAGTACCTCTGTGGTAGAACCACTAGGGAGTTGTGGACGCCATGTTTTGCTTTGGTGGTTGCGGGTTGAAGCTCGCACAGACAGCAAATTCCCTGCTCTATGGGTGATTGACCCTCCTTTGGACATCACAGTCCCATCGAAACGCACTCCATGGCCAGACTCTCCTCCTGAACTCCCATCTAATGAAAATGAAAAAGTGTTCGCTGCAGGCACAGAAGAGCATTCGAACACGCACACTACAAAGACTAAAACACCCAGATCCAGACGCAGTAGAAGTAAGAGAAAGCATGACACCAAAGTGATTGGTGTACAGGTCTCTACACATTCTGAACAAACCGAGATATGA
Protein sequence

>Msa0714590

MKLSTLQQSYINRRTNSFRGLDSDNGAGAVKSPATIFWLVLHGVCCLISLVLGFRFSRLVFFFLFSTSSTNIYTVPFTSGTGAGITVPVETQQNVLTNGSSVVASRVVVGRHGIRIRPWPHPDPVEVMKAHGIISRVQNEQRLLFGVKNPRKVIVVTPTYVRTFQAMHLTGVMHSLMLVPYDLTWIVVEAGGVTNETASIIGKSGLRIIHVGFNQKMPSLWEDRHKVESLMRLHALRIVRKEKLDGIVMFADDSNMHNMELFDEIQSVKWIGAVSVGILLHSVDAAEISSLVQKEGDEETMPMPVQGPACNGTDKLVGWHTFNSLRYTGRRAVYIDDRAPVLPTKFEWSGFVLNSRLLWKDVDDKPEWIKDLDALDGDGEKIESPLSLLKSTSVVEPLGSCGRHVLLWWLRVEARTDSKFPALWVIDPPLDITVPSKRTPWPDSPPELPSNENEKVFAAGTEEHSNTHTTKTKTPRSRRSRSKRKHDTKVIGVQVSTHSEQTEI*