AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756620 MtrunA17_Chr5g0401811 98.413 504 8 0 1 504 1 504 0.0 1020
Msa0756620 MtrunA17_Chr4g0053291 68.482 514 134 9 1 501 1 499 0.0 645
Msa0756620 MtrunA17_Chr3g0140951 28.328 293 159 9 151 434 188 438 1.19e-24 106
Msa0756620 MtrunA17_Chr3g0140001 28.947 342 180 13 113 432 131 431 1.51e-23 103
Msa0756620 MtrunA17_Chr7g0263751 26.168 214 122 5 147 359 101 279 6.17e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756620 AT5G67230.1 62.868 509 162 8 1 499 1 492 0.0 644
Msa0756620 AT4G36890.1 67.396 457 127 8 1 439 1 453 0.0 606
Msa0756620 AT1G27600.2 30.201 298 156 10 150 437 139 394 4.11e-26 110
Msa0756620 AT1G27600.1 30.201 298 156 10 150 437 139 394 4.11e-26 110
Msa0756620 AT2G37090.1 24.870 386 225 21 40 416 18 347 1.77e-13 72.4

Find 152 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAGACTGCTTCAATTAT+TGG 0.098423 5_2:+10995112 Msa0756620:CDS
TCTTTCATATGAACGGATTT+AGG 0.127596 5_2:-10998379 None:intergenic
TGATGCGTCTTCATGCTTTA+AGG 0.188622 5_2:+10995218 Msa0756620:CDS
CTTCAATTCATTACGATATA+CGG 0.199782 5_2:+10996445 Msa0756620:CDS
AAGAATTTGAATTGATTAAA+AGG 0.205637 5_2:+10998222 Msa0756620:three_prime_UTR
GCTTCAATTATTGGAAAATC+TGG 0.212918 5_2:+10995121 Msa0756620:CDS
ACTTCTACTGCGTCTGGATC+TGG 0.214817 5_2:-10998070 None:intergenic
CTTTCATATGAACGGATTTA+GGG 0.237938 5_2:-10998378 None:intergenic
TTATTGGAAAATCTGGATTA+AGG 0.251089 5_2:+10995128 Msa0756620:CDS
TGCTTAATCAGCCTCGTTCT+CGG 0.309400 5_2:+10994665 Msa0756620:CDS
CCGACAAAATTTGAATGGTC+TGG 0.319336 5_2:+10996509 Msa0756620:CDS
ATGTCTATCCTCCCACAAAC+TGG 0.330083 5_2:-10995182 None:intergenic
TGATAGTAATATGCATAATA+TGG 0.344407 5_2:+10996238 Msa0756620:CDS
CCGTTCATATGAAAGATTAA+AGG 0.348115 5_2:+10998386 Msa0756620:three_prime_UTR
CGATAAGCCAGAGTGGATTA+AGG 0.360709 5_2:+10996571 Msa0756620:CDS
TGCAGCTGAAATTTCTTCAT+TGG 0.365838 5_2:+10996334 Msa0756620:CDS
TTCCACCGGAACAGTGATTC+CGG 0.373427 5_2:-10994777 None:intergenic
AACATCCTTCCAAAGTAATC+TGG 0.378146 5_2:-10996546 None:intergenic
GGGAGTTCAGGAGGAGAGTC+TGG 0.378580 5_2:-10997970 None:intergenic
TCTCTTACTTCTACTGCGTC+TGG 0.379222 5_2:-10998076 None:intergenic
CGACAAAATTTGAATGGTCT+GGG 0.388127 5_2:+10996510 Msa0756620:CDS
ATGGGTGATTGACCCTCCTT+TGG 0.392966 5_2:+10997915 Msa0756620:CDS
TTCATTACTTCCACAGGATC+CGG 0.393487 5_2:-10994893 None:intergenic
AATGAACAGAGATTGTTGTT+TGG 0.396717 5_2:+10994944 Msa0756620:CDS
AGGAGAAGCTGATGTCTTCT+TGG 0.397900 5_2:+10998242 Msa0756620:three_prime_UTR
GAACAAACCGAGATATGAAT+TGG 0.407021 5_2:+10998144 Msa0756620:exon
GATTAAGGATTATTCATGTT+GGG 0.408461 5_2:+10995143 Msa0756620:CDS
CGTTCATATGAAAGATTAAA+GGG 0.418193 5_2:+10998387 Msa0756620:three_prime_UTR
GATGCGGCCATGGCCGAATC+CGG 0.419202 5_2:-10994871 None:intergenic
CTCTGAAGCTGTTTGTTCTA+CGG 0.421760 5_2:-10994565 None:intergenic
GGAGACACGGGATCCGGATT+CGG 0.428474 5_2:+10994858 Msa0756620:CDS
GGCCATGGAGTGCGTTTCGA+TGG 0.429896 5_2:-10997949 None:intergenic
ACTTGGATTGTGGTTGAAGC+TGG 0.431515 5_2:+10995079 Msa0756620:CDS
GCGCCGGTGCCGGAGGTGAA+TGG 0.438005 5_2:-10994755 None:intergenic
AGAAAACAAGACGAGAAAAT+CGG 0.438239 5_2:-10994691 None:intergenic
AATTGTCGCCGGTGACTTAA+CGG 0.438702 5_2:-10994615 None:intergenic
CAACAGAATGTTCTAACAAA+CGG 0.440408 5_2:+10994803 Msa0756620:CDS
AACAGAATGTTCTAACAAAC+GGG 0.445176 5_2:+10994804 Msa0756620:CDS
TCAGAAAATGCCCAGTTTGT+GGG 0.445775 5_2:+10995171 Msa0756620:CDS
CGTATATCGTAATGAATTGA+AGG 0.445991 5_2:-10996444 None:intergenic
CTTCTACTGCGTCTGGATCT+GGG 0.446602 5_2:-10998069 None:intergenic
ATGAAATTCAGAGTGTGAAA+TGG 0.447404 5_2:+10996270 Msa0756620:CDS
GATTCGGCCATGGCCGCATC+CGG 0.448954 5_2:+10994874 Msa0756620:CDS
AGTGATTCCGGCGCCGGTGC+CGG 0.451879 5_2:-10994765 None:intergenic
ATCAGAAAATGCCCAGTTTG+TGG 0.453676 5_2:+10995170 Msa0756620:CDS
TGCAACGTTGGCTGTCTTGT+GGG 0.460080 5_2:+10998427 Msa0756620:three_prime_UTR
TGCGCTTTCATTACTTCCAC+AGG 0.460964 5_2:-10994899 None:intergenic
TTCACCTCCGGCACCGGCGC+CGG 0.461470 5_2:+10994758 Msa0756620:CDS
GGATTAAGGATTATTCATGT+TGG 0.462578 5_2:+10995142 Msa0756620:CDS
GAAATGGATCGGTGCTGTTT+CGG 0.465735 5_2:+10996286 Msa0756620:CDS
CGGCGCCGGAATCACTGTTC+CGG 0.471719 5_2:+10994772 Msa0756620:CDS
TGTTGAATTCCAGATTACTT+TGG 0.473184 5_2:+10996537 Msa0756620:CDS
CACCAAAGTGATTGGTGTAC+AGG 0.476382 5_2:+10998107 Msa0756620:CDS
CGCCGGTGACTTAACGGCGC+CGG 0.479709 5_2:-10994609 None:intergenic
CGCCGGCGCCGTTAAGTCAC+CGG 0.482259 5_2:+10994607 Msa0756620:CDS
TGTTCTAACAAACGGGAGTT+CGG 0.482950 5_2:+10994811 Msa0756620:CDS
ACAATCCAAGTCAGATCATA+AGG 0.485169 5_2:-10995067 None:intergenic
ACAGGATCCGGATGCGGCCA+TGG 0.485837 5_2:-10994881 None:intergenic
AACAAACGGGAGTTCGGTAG+TGG 0.486109 5_2:+10994817 Msa0756620:CDS
AAGCATGACACCAAAGTGAT+TGG 0.488095 5_2:+10998099 Msa0756620:CDS
CCTTTAATCTTTCATATGAA+CGG 0.491162 5_2:-10998386 None:intergenic
AGATGCACCAATTCATATCT+CGG 0.491651 5_2:-10998151 None:intergenic
TACACCGTTCCATTCACCTC+CGG 0.496125 5_2:+10994746 Msa0756620:CDS
TTATGATCTGACTTGGATTG+TGG 0.497071 5_2:+10995069 Msa0756620:CDS
AGAGGCTTAGATTCAGATAA+CGG 0.497985 5_2:+10994584 Msa0756620:CDS
GCAGGACCTTGCACCGGCAT+TGG 0.498839 5_2:-10996386 None:intergenic
TTCAATTCATTACGATATAC+GGG 0.499087 5_2:+10996446 Msa0756620:CDS
TGTTGCCGACAAAATTTGAA+TGG 0.500655 5_2:+10996504 Msa0756620:CDS
CGGAACAGTGATTCCGGCGC+CGG 0.505384 5_2:-10994771 None:intergenic
CATCGAATAAAATTGAATAC+AGG 0.505551 5_2:-10998453 None:intergenic
GTTCCATTCACCTCCGGCAC+CGG 0.506995 5_2:+10994752 Msa0756620:CDS
GGTGGAGGGACTCACCGAGC+AGG 0.510465 5_2:-10996743 None:intergenic
GTGCAGTTTACATTGATGAC+CGG 0.511167 5_2:+10996474 Msa0756620:CDS
TTGCAACGTTGGCTGTCTTG+TGG 0.512397 5_2:+10998426 Msa0756620:three_prime_UTR
TGGTTGGGAGACACGGGATC+CGG 0.512530 5_2:+10994852 Msa0756620:CDS
GATTGTGAGAAAAGAGAAGC+TGG 0.516119 5_2:+10996193 Msa0756620:CDS
TTGTCGGCAACACTGGTGCC+CGG 0.518942 5_2:-10996493 None:intergenic
ACCTTGCACCGGCATTGGCA+TGG 0.519908 5_2:-10996381 None:intergenic
TGGATCGGTGCTGTTTCGGT+TGG 0.520170 5_2:+10996290 Msa0756620:CDS
TGGAACGGTGTAAATATTAG+TGG 0.521470 5_2:-10994735 None:intergenic
AAGGATCTTGATGCAGTGGA+TGG 0.529769 5_2:+10996590 Msa0756620:CDS
GCCATGGAGTGCGTTTCGAT+GGG 0.536780 5_2:-10997948 None:intergenic
GGAGAAGAAGATGGTGGTGT+TGG 0.537405 5_2:-10994370 None:intergenic
ATTCAAATTCTTGTCGCAGA+AGG 0.537501 5_2:-10998211 None:intergenic
GTGCAAGGTCCTGCTTGTAA+TGG 0.539674 5_2:+10996395 Msa0756620:CDS
TTTCAAGCGATGCATTTGAC+TGG 0.539811 5_2:+10995019 Msa0756620:CDS
TGGCGAGTAGAGTCGTGGTT+GGG 0.540904 5_2:+10994837 Msa0756620:CDS
AGGATCTTGATGCAGTGGAT+GGG 0.542197 5_2:+10996591 Msa0756620:CDS
TCAGGAGGAGAGTCTGGCCA+TGG 0.544157 5_2:-10997964 None:intergenic
AGAGTCGTGGTTGGGAGACA+CGG 0.549723 5_2:+10994845 Msa0756620:CDS
TGAGGAAACCATGCCAATGC+CGG 0.551614 5_2:+10996373 Msa0756620:CDS
ACCATGCCAATGCCGGTGCA+AGG 0.552760 5_2:+10996380 Msa0756620:CDS
GTGGCGAGTAGAGTCGTGGT+TGG 0.558097 5_2:+10994836 Msa0756620:CDS
CAGCTGCATCAACAGAATGA+AGG 0.558512 5_2:-10996319 None:intergenic
TCAAGATCCTTAATCCACTC+TGG 0.559323 5_2:-10996578 None:intergenic
CGCCGGAATCACTGTTCCGG+TGG 0.559732 5_2:+10994775 Msa0756620:CDS
AAGCAAGTTGGAGAAGAAGA+TGG 0.562027 5_2:-10994379 None:intergenic
TTGTAATGGTACTGATAAGT+TGG 0.564365 5_2:+10996409 Msa0756620:CDS
TTGTGCCTTATGATCTGACT+TGG 0.564918 5_2:+10995062 Msa0756620:CDS
ACGGGATCCGGATTCGGCCA+TGG 0.566818 5_2:+10994864 Msa0756620:CDS
TCATTAGATGGGAGTTCAGG+AGG 0.569861 5_2:-10997979 None:intergenic
TTGTGTTTATAAGAGAATGC+TGG 0.571085 5_2:+10998188 Msa0756620:three_prime_UTR
GAATTCCAGATTACTTTGGA+AGG 0.571302 5_2:+10996541 Msa0756620:CDS
TGCAGTTTACATTGATGACC+GGG 0.572154 5_2:+10996475 Msa0756620:CDS
ATGGTACTGATAAGTTGGTC+GGG 0.572519 5_2:+10996414 Msa0756620:CDS
GATTCCGGCGCCGGTGCCGG+AGG 0.573917 5_2:-10994762 None:intergenic
ATGGCCGCATCCGGATCCTG+TGG 0.574190 5_2:+10994883 Msa0756620:CDS
ACTTCCACAGGATCCGGATG+CGG 0.575433 5_2:-10994887 None:intergenic
AGACACGAATGCACATATGC+TGG 0.577405 5_2:-10998300 None:intergenic
ACATTCTGTTGAGTTTCCAC+CGG 0.578267 5_2:-10994791 None:intergenic
GGATCTTGATGCAGTGGATG+GGG 0.580516 5_2:+10996592 Msa0756620:CDS
CGTAGAACAAACAGCTTCAG+AGG 0.580812 5_2:+10994566 Msa0756620:CDS
GACCTGTACACCAATCACTT+TGG 0.581284 5_2:-10998109 None:intergenic
TTAGATTCAGATAACGGCGC+CGG 0.583256 5_2:+10994590 Msa0756620:CDS
TGTGAAAGTAAGAAGCAAGT+TGG 0.583322 5_2:-10994391 None:intergenic
TCCCATCGAAACGCACTCCA+TGG 0.588526 5_2:+10997947 Msa0756620:CDS
AATGGTACTGATAAGTTGGT+CGG 0.589439 5_2:+10996413 Msa0756620:CDS
TGGATTGTGGTTGAAGCTGG+TGG 0.591755 5_2:+10995082 Msa0756620:CDS
CAGACAGCAAATTCCCTGCT+CGG 0.596900 5_2:+10996729 Msa0756620:CDS
TGTCTATCCTCCCACAAACT+GGG 0.597037 5_2:-10995181 None:intergenic
CTTGATGCAGTGGATGGGGA+TGG 0.601002 5_2:+10996596 Msa0756620:CDS
GTGAGAAAAGAGAAGCTGGA+TGG 0.604430 5_2:+10996197 Msa0756620:CDS
GCAACCACCAAAGCAAAACA+TGG 0.606572 5_2:-10996691 None:intergenic
GTAGAACCACTAGGGAGTTG+TGG 0.607713 5_2:+10996665 Msa0756620:CDS
GTGGAAGTAATGAAAGCGCA+TGG 0.608289 5_2:+10994902 Msa0756620:CDS
GAGTCGTGGTTGGGAGACAC+GGG 0.613626 5_2:+10994846 Msa0756620:CDS
ACCTCTGTGGTAGAACCACT+AGG 0.613698 5_2:+10996656 Msa0756620:CDS
CAAGTTGGAGAAGAAGATGG+TGG 0.620394 5_2:-10994376 None:intergenic
GATGGGACTGTGATGTCCAA+AGG 0.622491 5_2:-10997931 None:intergenic
AAAATCGGAAGCCGAGAACG+AGG 0.625000 5_2:-10994676 None:intergenic
GGGACTGTGATGTCCAAAGG+AGG 0.626469 5_2:-10997928 None:intergenic
ATTCATTACGATATACGGGA+AGG 0.635243 5_2:+10996450 Msa0756620:CDS
GTGGAGGGACTCACCGAGCA+GGG 0.637902 5_2:-10996742 None:intergenic
GATTAAGGATCTTGATGCAG+TGG 0.642803 5_2:+10996586 Msa0756620:CDS
TTACAAGCAGGACCTTGCAC+CGG 0.643021 5_2:-10996392 None:intergenic
GAAAATGCCCAGTTTGTGGG+AGG 0.647991 5_2:+10995174 Msa0756620:CDS
ACTAGCCAGAAAATTGTCGC+CGG 0.649362 5_2:-10994626 None:intergenic
CCTCTGTGGTAGAACCACTA+GGG 0.659169 5_2:+10996657 Msa0756620:CDS
TTATCAGTACCATTACAAGC+AGG 0.660972 5_2:-10996404 None:intergenic
GGTGCCGGAGGTGAATGGAA+CGG 0.663294 5_2:-10994750 None:intergenic
AGCATTCTCTTATAAACACA+AGG 0.671290 5_2:-10998186 None:intergenic
GGACTGTGATGTCCAAAGGA+GGG 0.672528 5_2:-10997927 None:intergenic
ATTCAGAGTGTGAAATGGAT+CGG 0.672674 5_2:+10996275 Msa0756620:CDS
TGAAAAGTCCTCACATACGT+TGG 0.684360 5_2:-10995001 None:intergenic
GGTAGTGGCGAGTAGAGTCG+TGG 0.693719 5_2:+10994832 Msa0756620:CDS
TTTGCTCAAGAGTACCTCTG+TGG 0.694643 5_2:+10996643 Msa0756620:CDS
TGGCGTCCACAACTCCCTAG+TGG 0.699177 5_2:-10996671 None:intergenic
GTACTCTTGAGCAAAGACAG+TGG 0.702361 5_2:-10996635 None:intergenic
TTGTGACACCAACGTATGTG+AGG 0.703517 5_2:+10994993 Msa0756620:CDS
GTACTGATAAGTTGGTCGGG+TGG 0.704370 5_2:+10996417 Msa0756620:CDS
ATGTTGACGATAAGCCAGAG+TGG 0.723393 5_2:+10996564 Msa0756620:CDS
CCCTAGTGGTTCTACCACAG+AGG 0.724372 5_2:-10996657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATAAAAAAAAA+GGG - chr5_2:10996113-10996132 None:intergenic 0.0%
!! AAATAAAAAAATAAAAAAAA+AGG - chr5_2:10996114-10996133 None:intergenic 0.0%
!! TAAAAAAATAAAAAAAAAGG+GGG - chr5_2:10996111-10996130 None:intergenic 10.0%
!! AAAAATGTAAAAGAAAAAAT+GGG - chr5_2:10998334-10998353 None:intergenic 10.0%
!! AAAAAATGTAAAAGAAAAAA+TGG - chr5_2:10998335-10998354 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTGTTTG+TGG - chr5_2:10994508-10994527 None:intergenic 15.0%
!!! TTTTACTTGATTTGTTATTA+TGG + chr5_2:10995269-10995288 Msa0756620:intron 15.0%
!!! TGATTTTAGTCTTAAATTTA+TGG + chr5_2:10995770-10995789 Msa0756620:intron 15.0%
!!! TCAGAAATATTCAAATTTTA+GGG - chr5_2:10996929-10996948 None:intergenic 15.0%
!!! ATCAGAAATATTCAAATTTT+AGG - chr5_2:10996930-10996949 None:intergenic 15.0%
!! AAGAATTTGAATTGATTAAA+AGG + chr5_2:10998222-10998241 Msa0756620:three_prime_UTR 15.0%
!!! TTTTTTTTCCTTATTTTTCT+TGG + chr5_2:10998350-10998369 Msa0756620:three_prime_UTR 15.0%
!!! AAGTAAAAGCATAAACTAAA+AGG - chr5_2:10995257-10995276 None:intergenic 20.0%
!!! TTGTAAATTGATTTTTGTCA+TGG + chr5_2:10995679-10995698 Msa0756620:intron 20.0%
!!! TTGATTTTAACCATAAAAGT+GGG - chr5_2:10995848-10995867 None:intergenic 20.0%
!!! ATTGATTTTAACCATAAAAG+TGG - chr5_2:10995849-10995868 None:intergenic 20.0%
!! GTATTTAGTAATTAAGTCAA+AGG - chr5_2:10996014-10996033 None:intergenic 20.0%
!! TGATAGTAATATGCATAATA+TGG + chr5_2:10996238-10996257 Msa0756620:CDS 20.0%
!! ATTAAGATAGTCATGATTAT+AGG - chr5_2:10997024-10997043 None:intergenic 20.0%
!! ATAATCATGACTATCTTAAT+AGG + chr5_2:10997024-10997043 Msa0756620:intron 20.0%
!! AATGAAAGATTCAATTTATG+TGG + chr5_2:10997293-10997312 Msa0756620:intron 20.0%
!! ATGAAAGATTCAATTTATGT+GGG + chr5_2:10997294-10997313 Msa0756620:intron 20.0%
!! ATACAATTGGATATAATGAT+TGG + chr5_2:10997419-10997438 Msa0756620:intron 20.0%
!! TACAATTGGATATAATGATT+GGG + chr5_2:10997420-10997439 Msa0756620:intron 20.0%
!!! ATTTATTTCTAGGTTCTTAT+AGG + chr5_2:10997752-10997771 Msa0756620:intron 20.0%
!!! CTTTTTCATTTTCATTAGAT+GGG - chr5_2:10997993-10998012 None:intergenic 20.0%
!!! ACTTTTTCATTTTCATTAGA+TGG - chr5_2:10997994-10998013 None:intergenic 20.0%
! TTATTGGAAAATCTGGATTA+AGG + chr5_2:10995128-10995147 Msa0756620:CDS 25.0%
! GATTAAGGATTATTCATGTT+GGG + chr5_2:10995143-10995162 Msa0756620:CDS 25.0%
!! ATGTGAAAGGATTTTATGTT+TGG + chr5_2:10995516-10995535 Msa0756620:intron 25.0%
! TGAATTGAATGACAAGTATA+AGG + chr5_2:10995556-10995575 Msa0756620:intron 25.0%
!!! TATTTGGTTTCAAGTTTCTA+GGG + chr5_2:10995637-10995656 Msa0756620:intron 25.0%
!!! AAATTGATTTTTGTCATGGT+TGG + chr5_2:10995683-10995702 Msa0756620:intron 25.0%
! TGAATGTATTTGTGTAAAAG+TGG - chr5_2:10995802-10995821 None:intergenic 25.0%
! CTTCAATTCATTACGATATA+CGG + chr5_2:10996445-10996464 Msa0756620:CDS 25.0%
! TTCAATTCATTACGATATAC+GGG + chr5_2:10996446-10996465 Msa0756620:CDS 25.0%
!! TGAAAACGTTTAGAATATAG+AGG - chr5_2:10996767-10996786 None:intergenic 25.0%
!!! TGTTTTTTACACTATCGTAT+TGG - chr5_2:10996859-10996878 None:intergenic 25.0%
!!! AAATTTTAGGGAGTAGTTTT+TGG - chr5_2:10996917-10996936 None:intergenic 25.0%
! ATTCTAAGCAATGTTCTTAT+GGG - chr5_2:10997163-10997182 None:intergenic 25.0%
! TATTCTAAGCAATGTTCTTA+TGG - chr5_2:10997164-10997183 None:intergenic 25.0%
! ATAACATTTCTACTCCAATA+TGG - chr5_2:10997195-10997214 None:intergenic 25.0%
! TATTGGAGTAGAAATGTTAT+AGG + chr5_2:10997195-10997214 Msa0756620:intron 25.0%
! ACTTTATGACTTTCTTATAC+AGG + chr5_2:10997322-10997341 Msa0756620:intron 25.0%
!!! TCTAACAAATCCTATTTTTC+TGG - chr5_2:10997477-10997496 None:intergenic 25.0%
!!! GATTTGTTAGATCAAAATGT+TGG + chr5_2:10997486-10997505 Msa0756620:intron 25.0%
!! TTAGATCAAAATGTTGGTAA+CGG + chr5_2:10997492-10997511 Msa0756620:intron 25.0%
! GAAATCATTAACAAGTGATT+TGG - chr5_2:10997540-10997559 None:intergenic 25.0%
!! CAAATTTTATGTCTGAGAAT+GGG + chr5_2:10997633-10997652 Msa0756620:intron 25.0%
!! AAATTTTATGTCTGAGAATG+GGG + chr5_2:10997634-10997653 Msa0756620:intron 25.0%
! ATGTTGTTAAAATGTGATCA+TGG + chr5_2:10997728-10997747 Msa0756620:intron 25.0%
!! TGATCATGGAATTTATTTCT+AGG + chr5_2:10997742-10997761 Msa0756620:intron 25.0%
!! TTTTGTACTTCAATTTTCGA+CGG + chr5_2:10997781-10997800 Msa0756620:intron 25.0%
! CAAATATGCAAATAAATGCA+AGG - chr5_2:10997849-10997868 None:intergenic 25.0%
!!! TTTTTCCTTATTTTTCTTGG+AGG + chr5_2:10998353-10998372 Msa0756620:three_prime_UTR 25.0%
! CCTTTAATCTTTCATATGAA+CGG - chr5_2:10998389-10998408 None:intergenic 25.0%
! CGTTCATATGAAAGATTAAA+GGG + chr5_2:10998387-10998406 Msa0756620:three_prime_UTR 25.0%
! CATCGAATAAAATTGAATAC+AGG - chr5_2:10998456-10998475 None:intergenic 25.0%
! TTTTGTGTTTGTGGATGTTA+AGG - chr5_2:10994499-10994518 None:intergenic 30.0%
AGAAAACAAGACGAGAAAAT+CGG - chr5_2:10994694-10994713 None:intergenic 30.0%
CAACAGAATGTTCTAACAAA+CGG + chr5_2:10994803-10994822 Msa0756620:CDS 30.0%
AACAGAATGTTCTAACAAAC+GGG + chr5_2:10994804-10994823 Msa0756620:CDS 30.0%
! AATGAACAGAGATTGTTGTT+TGG + chr5_2:10994944-10994963 Msa0756620:CDS 30.0%
!! TCACAACAATCACTTTTCTA+GGG - chr5_2:10994979-10994998 None:intergenic 30.0%
AATGAGACTGCTTCAATTAT+TGG + chr5_2:10995112-10995131 Msa0756620:CDS 30.0%
GCTTCAATTATTGGAAAATC+TGG + chr5_2:10995121-10995140 Msa0756620:CDS 30.0%
GGATTAAGGATTATTCATGT+TGG + chr5_2:10995142-10995161 Msa0756620:CDS 30.0%
GATTTGCAGTAGAATCTTTA+TGG + chr5_2:10995305-10995324 Msa0756620:intron 30.0%
TGTTTGAATAATTAGTGTCG+CGG + chr5_2:10995333-10995352 Msa0756620:intron 30.0%
ATGATTGAATATGCCAAATG+TGG + chr5_2:10995403-10995422 Msa0756620:intron 30.0%
AATACACACTAAACCACATT+TGG - chr5_2:10995419-10995438 None:intergenic 30.0%
AATGTGGTTTAGTGTGTATT+TGG + chr5_2:10995419-10995438 Msa0756620:intron 30.0%
!! TGATTCTGTGAAGTTGATTT+TGG + chr5_2:10995475-10995494 Msa0756620:intron 30.0%
AGTGAATTGTTAGATGTGAA+AGG + chr5_2:10995503-10995522 Msa0756620:intron 30.0%
!! GTATTTGGTTTCAAGTTTCT+AGG + chr5_2:10995636-10995655 Msa0756620:intron 30.0%
CAAGTAGAATTCATTCTACA+AGG - chr5_2:10995717-10995736 None:intergenic 30.0%
! AAGTTAGAATTTGCAGCTTT+TGG + chr5_2:10995737-10995756 Msa0756620:intron 30.0%
!! TTACATTCAACCCACTTTTA+TGG + chr5_2:10995835-10995854 Msa0756620:intron 30.0%
TATATGTTTGATTCCACTTC+TGG - chr5_2:10995902-10995921 None:intergenic 30.0%
GCATTACAAGGTTTCAAAAA+AGG - chr5_2:10995992-10996011 None:intergenic 30.0%
!! ATTAAGTCAAAGGCATTACA+AGG - chr5_2:10996004-10996023 None:intergenic 30.0%
CACAAGGAAAAATCAACAAA+AGG - chr5_2:10996164-10996183 None:intergenic 30.0%
!!! TTGTTGATTTTTCCTTGTGA+TGG + chr5_2:10996165-10996184 Msa0756620:intron 30.0%
ATGAAATTCAGAGTGTGAAA+TGG + chr5_2:10996270-10996289 Msa0756620:CDS 30.0%
!! TCTTCATTGGTTCAAAAAGA+AGG + chr5_2:10996347-10996366 Msa0756620:CDS 30.0%
!! TTGTAATGGTACTGATAAGT+TGG + chr5_2:10996409-10996428 Msa0756620:CDS 30.0%
CGTATATCGTAATGAATTGA+AGG - chr5_2:10996447-10996466 None:intergenic 30.0%
TGTTGAATTCCAGATTACTT+TGG + chr5_2:10996537-10996556 Msa0756620:CDS 30.0%
! AAACGTTTAGAATATAGAGG+TGG - chr5_2:10996764-10996783 None:intergenic 30.0%
GTTTGGCAAATGAAAATTAC+GGG - chr5_2:10996796-10996815 None:intergenic 30.0%
CGTTTGGCAAATGAAAATTA+CGG - chr5_2:10996797-10996816 None:intergenic 30.0%
CATAGAAATAAGACATCGTT+TGG - chr5_2:10996813-10996832 None:intergenic 30.0%
TAAGTAAGAACTACATAAGC+TGG - chr5_2:10997108-10997127 None:intergenic 30.0%
TTGAAAAAAATTCCGCACAA+AGG + chr5_2:10997265-10997284 Msa0756620:intron 30.0%
TGAAAAAAATTCCGCACAAA+GGG + chr5_2:10997266-10997285 Msa0756620:intron 30.0%
ATCAGTCTCTAATTGTATGT+CGG + chr5_2:10997388-10997407 Msa0756620:intron 30.0%
AATTGGATATAATGATTGGG+TGG + chr5_2:10997423-10997442 Msa0756620:intron 30.0%
ATTGGATATAATGATTGGGT+GGG + chr5_2:10997424-10997443 Msa0756620:intron 30.0%
!!! AATCCTATTTTTCTGGAGTT+AGG - chr5_2:10997470-10997489 None:intergenic 30.0%
! TGCTGTGTTCTTAATAGTTT+TGG - chr5_2:10997615-10997634 None:intergenic 30.0%
! GCAAATTTTATGTCTGAGAA+TGG + chr5_2:10997632-10997651 Msa0756620:intron 30.0%
! AATTTTATGTCTGAGAATGG+GGG + chr5_2:10997635-10997654 Msa0756620:intron 30.0%
TTGCACTAATTGTAGAAGTA+GGG - chr5_2:10997675-10997694 None:intergenic 30.0%
ATTGCACTAATTGTAGAAGT+AGG - chr5_2:10997676-10997695 None:intergenic 30.0%
AATTTGACATCATGTGTGTT+TGG + chr5_2:10997701-10997720 Msa0756620:intron 30.0%
! TTTGTACTTCAATTTTCGAC+GGG + chr5_2:10997782-10997801 Msa0756620:intron 30.0%
TACATAATCCATGCACTATT+TGG - chr5_2:10997812-10997831 None:intergenic 30.0%
GAAATAGCATCATATAGTCA+GGG - chr5_2:10997889-10997908 None:intergenic 30.0%
TGAAATAGCATCATATAGTC+AGG - chr5_2:10997890-10997909 None:intergenic 30.0%
AGCATTCTCTTATAAACACA+AGG - chr5_2:10998189-10998208 None:intergenic 30.0%
TTGTGTTTATAAGAGAATGC+TGG + chr5_2:10998188-10998207 Msa0756620:three_prime_UTR 30.0%
! CTTTCATATGAACGGATTTA+GGG - chr5_2:10998381-10998400 None:intergenic 30.0%
! TCTTTCATATGAACGGATTT+AGG - chr5_2:10998382-10998401 None:intergenic 30.0%
CCGTTCATATGAAAGATTAA+AGG + chr5_2:10998386-10998405 Msa0756620:three_prime_UTR 30.0%
TGTGAAAGTAAGAAGCAAGT+TGG - chr5_2:10994394-10994413 None:intergenic 35.0%
AGAGGCTTAGATTCAGATAA+CGG + chr5_2:10994584-10994603 Msa0756620:CDS 35.0%
!!! ATTTTCTGGCTAGTACTTCA+CGG + chr5_2:10994635-10994654 Msa0756620:CDS 35.0%
TGGAACGGTGTAAATATTAG+TGG - chr5_2:10994738-10994757 None:intergenic 35.0%
!! GTCACAACAATCACTTTTCT+AGG - chr5_2:10994980-10994999 None:intergenic 35.0%
ACAATCCAAGTCAGATCATA+AGG - chr5_2:10995070-10995089 None:intergenic 35.0%
!! TTATGATCTGACTTGGATTG+TGG + chr5_2:10995069-10995088 Msa0756620:CDS 35.0%
! AATTAGTGTCGCGGTTTTTA+TGG + chr5_2:10995342-10995361 Msa0756620:intron 35.0%
CATGATTCTCCGCAATATAA+GGG - chr5_2:10995386-10995405 None:intergenic 35.0%
TCATGATTCTCCGCAATATA+AGG - chr5_2:10995387-10995406 None:intergenic 35.0%
!! TTAGTGTGTATTTGGTTCTG+TGG + chr5_2:10995427-10995446 Msa0756620:intron 35.0%
!! TTCTAGCTTCAAGTCAGAAT+CGG + chr5_2:10995612-10995631 Msa0756620:intron 35.0%
TTCACAACAAGACAACAATC+TGG - chr5_2:10995969-10995988 None:intergenic 35.0%
!! ATTTTTCCTTGTGATGGAAC+AGG + chr5_2:10996171-10996190 Msa0756620:intron 35.0%
ATTCAGAGTGTGAAATGGAT+CGG + chr5_2:10996275-10996294 Msa0756620:CDS 35.0%
TGCAGCTGAAATTTCTTCAT+TGG + chr5_2:10996334-10996353 Msa0756620:CDS 35.0%
TTATCAGTACCATTACAAGC+AGG - chr5_2:10996407-10996426 None:intergenic 35.0%
!! AATGGTACTGATAAGTTGGT+CGG + chr5_2:10996413-10996432 Msa0756620:CDS 35.0%
ATTCATTACGATATACGGGA+AGG + chr5_2:10996450-10996469 Msa0756620:CDS 35.0%
TGTTGCCGACAAAATTTGAA+TGG + chr5_2:10996504-10996523 Msa0756620:CDS 35.0%
! CCAGACCATTCAAATTTTGT+CGG - chr5_2:10996512-10996531 None:intergenic 35.0%
CGACAAAATTTGAATGGTCT+GGG + chr5_2:10996510-10996529 Msa0756620:CDS 35.0%
GAATTCCAGATTACTTTGGA+AGG + chr5_2:10996541-10996560 Msa0756620:CDS 35.0%
AACATCCTTCCAAAGTAATC+TGG - chr5_2:10996549-10996568 None:intergenic 35.0%
! GTTTAGAATATAGAGGTGGA+GGG - chr5_2:10996760-10996779 None:intergenic 35.0%
!!! GTTTTTGGCTTTGAGCTTTT+GGG - chr5_2:10996902-10996921 None:intergenic 35.0%
!!! AGTTTTTGGCTTTGAGCTTT+TGG - chr5_2:10996903-10996922 None:intergenic 35.0%
! GTAACTGCTGAGTTTTCTTT+CGG - chr5_2:10996980-10996999 None:intergenic 35.0%
AGAATACACTGCTACCATAT+TGG + chr5_2:10997178-10997197 Msa0756620:intron 35.0%
TACTGTCTAGTGATAATAGC+TGG + chr5_2:10997241-10997260 Msa0756620:intron 35.0%
! TTTCATTTTCTCCCTTTGTG+CGG - chr5_2:10997280-10997299 None:intergenic 35.0%
TTACTATACAATCAGCCTGT+AGG - chr5_2:10997348-10997367 None:intergenic 35.0%
TCAGTCTCTAATTGTATGTC+GGG + chr5_2:10997389-10997408 Msa0756620:intron 35.0%
GTCGGGTTAATTGATACAAT+TGG + chr5_2:10997406-10997425 Msa0756620:intron 35.0%
GCTGAAGTCTATGATCAAAT+AGG - chr5_2:10997518-10997537 None:intergenic 35.0%
! TCACTTGTTAATGATTTCCC+AGG + chr5_2:10997542-10997561 Msa0756620:intron 35.0%
! CACTTGTTAATGATTTCCCA+GGG + chr5_2:10997543-10997562 Msa0756620:intron 35.0%
! ACTTGTTAATGATTTCCCAG+GGG + chr5_2:10997544-10997563 Msa0756620:intron 35.0%
TTTCTAGGTTCTTATAGGTC+AGG + chr5_2:10997757-10997776 Msa0756620:intron 35.0%
CATCATATAGTCAGGGATAT+AGG - chr5_2:10997882-10997901 None:intergenic 35.0%
!! ATGATGCTATTTCATGCAGA+TGG + chr5_2:10997896-10997915 Msa0756620:intron 35.0%
!! TGATGCTATTTCATGCAGAT+GGG + chr5_2:10997897-10997916 Msa0756620:intron 35.0%
! TTTTCATTAGATGGGAGTTC+AGG - chr5_2:10997985-10998004 None:intergenic 35.0%
GAACAAACCGAGATATGAAT+TGG + chr5_2:10998144-10998163 Msa0756620:exon 35.0%
AGATGCACCAATTCATATCT+CGG - chr5_2:10998154-10998173 None:intergenic 35.0%
ATTCAAATTCTTGTCGCAGA+AGG - chr5_2:10998214-10998233 None:intergenic 35.0%
! ATCTGTCGAGAAGCTTTTTA+TGG + chr5_2:10998273-10998292 Msa0756620:three_prime_UTR 35.0%
!!! TCAACTTAGTTTTGCAACGT+TGG + chr5_2:10998415-10998434 Msa0756620:three_prime_UTR 35.0%
!!! GTTGGCTTTTTGTAGTTTGG+TGG - chr5_2:10994355-10994374 None:intergenic 40.0%
!!! GGTGTTGGCTTTTTGTAGTT+TGG - chr5_2:10994358-10994377 None:intergenic 40.0%
! AAGCAAGTTGGAGAAGAAGA+TGG - chr5_2:10994382-10994401 None:intergenic 40.0%
!! CTCTGAAGCTGTTTGTTCTA+CGG - chr5_2:10994568-10994587 None:intergenic 40.0%
ACATTCTGTTGAGTTTCCAC+CGG - chr5_2:10994794-10994813 None:intergenic 40.0%
TGTTCTAACAAACGGGAGTT+CGG + chr5_2:10994811-10994830 Msa0756620:CDS 40.0%
TTCATTACTTCCACAGGATC+CGG - chr5_2:10994896-10994915 None:intergenic 40.0%
TGAAAAGTCCTCACATACGT+TGG - chr5_2:10995004-10995023 None:intergenic 40.0%
TTTCAAGCGATGCATTTGAC+TGG + chr5_2:10995019-10995038 Msa0756620:CDS 40.0%
TTGTGCCTTATGATCTGACT+TGG + chr5_2:10995062-10995081 Msa0756620:CDS 40.0%
ATCAGAAAATGCCCAGTTTG+TGG + chr5_2:10995170-10995189 Msa0756620:CDS 40.0%
TCAGAAAATGCCCAGTTTGT+GGG + chr5_2:10995171-10995190 Msa0756620:CDS 40.0%
TGATGCGTCTTCATGCTTTA+AGG + chr5_2:10995218-10995237 Msa0756620:CDS 40.0%
TGTCACGATCCCTTATATTG+CGG + chr5_2:10995374-10995393 Msa0756620:intron 40.0%
CAAGTCAGAATCGGTGTATT+TGG + chr5_2:10995621-10995640 Msa0756620:intron 40.0%
GATTGTGAGAAAAGAGAAGC+TGG + chr5_2:10996193-10996212 Msa0756620:CDS 40.0%
GGTTCAAAAAGAAGGAGATG+AGG + chr5_2:10996355-10996374 Msa0756620:CDS 40.0%
!! ATGGTACTGATAAGTTGGTC+GGG + chr5_2:10996414-10996433 Msa0756620:CDS 40.0%
! GTGCAGTTTACATTGATGAC+CGG + chr5_2:10996474-10996493 Msa0756620:CDS 40.0%
! TGCAGTTTACATTGATGACC+GGG + chr5_2:10996475-10996494 Msa0756620:CDS 40.0%
! TCAAATTTTGTCGGCAACAC+TGG - chr5_2:10996503-10996522 None:intergenic 40.0%
CCGACAAAATTTGAATGGTC+TGG + chr5_2:10996509-10996528 Msa0756620:CDS 40.0%
TCAAGATCCTTAATCCACTC+TGG - chr5_2:10996581-10996600 None:intergenic 40.0%
GATTAAGGATCTTGATGCAG+TGG + chr5_2:10996586-10996605 Msa0756620:CDS 40.0%
!! ATGTTTTGCTTTGGTGGTTG+CGG + chr5_2:10996693-10996712 Msa0756620:CDS 40.0%
! CGTTTAGAATATAGAGGTGG+AGG - chr5_2:10996761-10996780 None:intergenic 40.0%
! CTCAGCAGTTACAGTTTTTG+TGG + chr5_2:10996988-10997007 Msa0756620:intron 40.0%
TGGGCATCATGTGATGATAT+AGG + chr5_2:10997069-10997088 Msa0756620:intron 40.0%
TTACTTAAGCACCCACTACA+AGG + chr5_2:10997121-10997140 Msa0756620:intron 40.0%
TTATGGGTCAATGTGACTAG+AGG - chr5_2:10997147-10997166 None:intergenic 40.0%
ACTTTCTTATACAGGCCTAC+AGG + chr5_2:10997330-10997349 Msa0756620:intron 40.0%
ATAATGATTGGGTGGGTGAT+AGG + chr5_2:10997431-10997450 Msa0756620:intron 40.0%
GCACCTAACTCCAGAAAAAT+AGG + chr5_2:10997464-10997483 Msa0756620:intron 40.0%
!! AATGAAAAAGTGTTCGCTGC+AGG + chr5_2:10998003-10998022 Msa0756620:CDS 40.0%
AAGCATGACACCAAAGTGAT+TGG + chr5_2:10998099-10998118 Msa0756620:CDS 40.0%
! GTCGAGAAGCTTTTTATGGT+TGG + chr5_2:10998277-10998296 Msa0756620:three_prime_UTR 40.0%
!! GGCTTTTTGTAGTTTGGTGG+TGG - chr5_2:10994352-10994371 None:intergenic 45.0%
! CAAGTTGGAGAAGAAGATGG+TGG - chr5_2:10994379-10994398 None:intergenic 45.0%
CGTAGAACAAACAGCTTCAG+AGG + chr5_2:10994566-10994585 Msa0756620:CDS 45.0%
! TTAGATTCAGATAACGGCGC+CGG + chr5_2:10994590-10994609 Msa0756620:CDS 45.0%
AATTGTCGCCGGTGACTTAA+CGG - chr5_2:10994618-10994637 None:intergenic 45.0%
ACTAGCCAGAAAATTGTCGC+CGG - chr5_2:10994629-10994648 None:intergenic 45.0%
TGCTTAATCAGCCTCGTTCT+CGG + chr5_2:10994665-10994684 Msa0756620:CDS 45.0%
TGCGCTTTCATTACTTCCAC+AGG - chr5_2:10994902-10994921 None:intergenic 45.0%
! GTGGAAGTAATGAAAGCGCA+TGG + chr5_2:10994902-10994921 Msa0756620:CDS 45.0%
TTGTGACACCAACGTATGTG+AGG + chr5_2:10994993-10995012 Msa0756620:CDS 45.0%
ACTTGGATTGTGGTTGAAGC+TGG + chr5_2:10995079-10995098 Msa0756620:CDS 45.0%
TGTCTATCCTCCCACAAACT+GGG - chr5_2:10995184-10995203 None:intergenic 45.0%
ATGTCTATCCTCCCACAAAC+TGG - chr5_2:10995185-10995204 None:intergenic 45.0%
! AGGGTCAAAGTCGATTCTAG+AGG + chr5_2:10995656-10995675 Msa0756620:intron 45.0%
! AATTTTGCGTGCTCCAGAAG+TGG + chr5_2:10995886-10995905 Msa0756620:intron 45.0%
CACAATCCTGTTCCATCACA+AGG - chr5_2:10996180-10996199 None:intergenic 45.0%
GTGAGAAAAGAGAAGCTGGA+TGG + chr5_2:10996197-10996216 Msa0756620:CDS 45.0%
!! GAAATGGATCGGTGCTGTTT+CGG + chr5_2:10996286-10996305 Msa0756620:CDS 45.0%
CAGCTGCATCAACAGAATGA+AGG - chr5_2:10996322-10996341 None:intergenic 45.0%
ATGTTGACGATAAGCCAGAG+TGG + chr5_2:10996564-10996583 Msa0756620:CDS 45.0%
!! CGATAAGCCAGAGTGGATTA+AGG + chr5_2:10996571-10996590 Msa0756620:CDS 45.0%
AAGGATCTTGATGCAGTGGA+TGG + chr5_2:10996590-10996609 Msa0756620:CDS 45.0%
AGGATCTTGATGCAGTGGAT+GGG + chr5_2:10996591-10996610 Msa0756620:CDS 45.0%
GTACTCTTGAGCAAAGACAG+TGG - chr5_2:10996638-10996657 None:intergenic 45.0%
!! TTTGCTCAAGAGTACCTCTG+TGG + chr5_2:10996643-10996662 Msa0756620:CDS 45.0%
GCAACCACCAAAGCAAAACA+TGG - chr5_2:10996694-10996713 None:intergenic 45.0%
!! TGTTTTGCTTTGGTGGTTGC+GGG + chr5_2:10996694-10996713 Msa0756620:CDS 45.0%
!!! TTGGCTTTGAGCTTTTGGGT+GGG - chr5_2:10996898-10996917 None:intergenic 45.0%
!!! TTTGGCTTTGAGCTTTTGGG+TGG - chr5_2:10996899-10996918 None:intergenic 45.0%
! TAGCTGCATGCACTGATACT+TGG + chr5_2:10997049-10997068 Msa0756620:intron 45.0%
! AGCTGCATGCACTGATACTT+GGG + chr5_2:10997050-10997069 Msa0756620:intron 45.0%
!! TTTCTGGAGTTAGGTGCTAC+TGG - chr5_2:10997461-10997480 None:intergenic 45.0%
AAATCCAAGCTGTACCCAGA+AGG - chr5_2:10997580-10997599 None:intergenic 45.0%
TTATGTCTGAGAATGGGGGA+AGG + chr5_2:10997639-10997658 Msa0756620:intron 45.0%
TATGTCTGAGAATGGGGGAA+GGG + chr5_2:10997640-10997659 Msa0756620:intron 45.0%
TAATTGTAGAAGTAGGGCCC+TGG - chr5_2:10997669-10997688 None:intergenic 45.0%
TCATTAGATGGGAGTTCAGG+AGG - chr5_2:10997982-10998001 None:intergenic 45.0%
TCTCTTACTTCTACTGCGTC+TGG - chr5_2:10998079-10998098 None:intergenic 45.0%
CACCAAAGTGATTGGTGTAC+AGG + chr5_2:10998107-10998126 Msa0756620:CDS 45.0%
GACCTGTACACCAATCACTT+TGG - chr5_2:10998112-10998131 None:intergenic 45.0%
AGGAGAAGCTGATGTCTTCT+TGG + chr5_2:10998242-10998261 Msa0756620:three_prime_UTR 45.0%
AGACACGAATGCACATATGC+TGG - chr5_2:10998303-10998322 None:intergenic 45.0%
GGGCACCTCCAAGAAAAATA+AGG - chr5_2:10998361-10998380 None:intergenic 45.0%
!! ATAAAAAAATAAAAAAAAAG+GGG - chr5_2:10996112-10996131 None:intergenic 5.0%
! GGAGAAGAAGATGGTGGTGT+TGG - chr5_2:10994373-10994392 None:intergenic 50.0%
! AGTCACCGGCGACAATTTTC+TGG + chr5_2:10994621-10994640 Msa0756620:CDS 50.0%
AAAATCGGAAGCCGAGAACG+AGG - chr5_2:10994679-10994698 None:intergenic 50.0%
TACACCGTTCCATTCACCTC+CGG + chr5_2:10994746-10994765 Msa0756620:CDS 50.0%
TTCCACCGGAACAGTGATTC+CGG - chr5_2:10994780-10994799 None:intergenic 50.0%
AACAAACGGGAGTTCGGTAG+TGG + chr5_2:10994817-10994836 Msa0756620:CDS 50.0%
TGGATTGTGGTTGAAGCTGG+TGG + chr5_2:10995082-10995101 Msa0756620:CDS 50.0%
GAAAATGCCCAGTTTGTGGG+AGG + chr5_2:10995174-10995193 Msa0756620:CDS 50.0%
TGAGGAAACCATGCCAATGC+CGG + chr5_2:10996373-10996392 Msa0756620:CDS 50.0%
TTACAAGCAGGACCTTGCAC+CGG - chr5_2:10996395-10996414 None:intergenic 50.0%
GTGCAAGGTCCTGCTTGTAA+TGG + chr5_2:10996395-10996414 Msa0756620:CDS 50.0%
!! GTACTGATAAGTTGGTCGGG+TGG + chr5_2:10996417-10996436 Msa0756620:CDS 50.0%
GGATCTTGATGCAGTGGATG+GGG + chr5_2:10996592-10996611 Msa0756620:CDS 50.0%
ACCTCTGTGGTAGAACCACT+AGG + chr5_2:10996656-10996675 Msa0756620:CDS 50.0%
CCTCTGTGGTAGAACCACTA+GGG + chr5_2:10996657-10996676 Msa0756620:CDS 50.0%
GTAGAACCACTAGGGAGTTG+TGG + chr5_2:10996665-10996684 Msa0756620:CDS 50.0%
! GTGGACGCCATGTTTTGCTT+TGG + chr5_2:10996684-10996703 Msa0756620:CDS 50.0%
! GACGCCATGTTTTGCTTTGG+TGG + chr5_2:10996687-10996706 Msa0756620:CDS 50.0%
CAGACAGCAAATTCCCTGCT+CGG + chr5_2:10996729-10996748 Msa0756620:CDS 50.0%
!! CTTTGAGCTTTTGGGTGGGT+TGG - chr5_2:10996894-10996913 None:intergenic 50.0%
! GTGACTAGAGGCCTTGTAGT+GGG - chr5_2:10997135-10997154 None:intergenic 50.0%
! TGTGACTAGAGGCCTTGTAG+TGG - chr5_2:10997136-10997155 None:intergenic 50.0%
! GATTTCCCAGGGGTATGTTC+TGG + chr5_2:10997554-10997573 Msa0756620:intron 50.0%
ATGTCTGAGAATGGGGGAAG+GGG + chr5_2:10997641-10997660 Msa0756620:intron 50.0%
CGGGTTGTCCAAATAGTGCA+TGG + chr5_2:10997801-10997820 Msa0756620:intron 50.0%
ATGGGTGATTGACCCTCCTT+TGG + chr5_2:10997915-10997934 Msa0756620:CDS 50.0%
GGACTGTGATGTCCAAAGGA+GGG - chr5_2:10997930-10997949 None:intergenic 50.0%
GATGGGACTGTGATGTCCAA+AGG - chr5_2:10997934-10997953 None:intergenic 50.0%
CTTCTACTGCGTCTGGATCT+GGG - chr5_2:10998072-10998091 None:intergenic 50.0%
ACTTCTACTGCGTCTGGATC+TGG - chr5_2:10998073-10998092 None:intergenic 50.0%
! TTGCAACGTTGGCTGTCTTG+TGG + chr5_2:10998426-10998445 Msa0756620:three_prime_UTR 50.0%
! TGCAACGTTGGCTGTCTTGT+GGG + chr5_2:10998427-10998446 Msa0756620:three_prime_UTR 50.0%
TGGCGAGTAGAGTCGTGGTT+GGG + chr5_2:10994837-10994856 Msa0756620:CDS 55.0%
AGAGTCGTGGTTGGGAGACA+CGG + chr5_2:10994845-10994864 Msa0756620:CDS 55.0%
ACTTCCACAGGATCCGGATG+CGG - chr5_2:10994890-10994909 None:intergenic 55.0%
!! TGGATCGGTGCTGTTTCGGT+TGG + chr5_2:10996290-10996309 Msa0756620:CDS 55.0%
CTTGATGCAGTGGATGGGGA+TGG + chr5_2:10996596-10996615 Msa0756620:CDS 55.0%
! CCCTAGTGGTTCTACCACAG+AGG - chr5_2:10996660-10996679 None:intergenic 55.0%
GAAGGCCAGAACATACCCCT+GGG - chr5_2:10997562-10997581 None:intergenic 55.0%
AGAAGGCCAGAACATACCCC+TGG - chr5_2:10997563-10997582 None:intergenic 55.0%
! AGGGGTATGTTCTGGCCTTC+TGG + chr5_2:10997562-10997581 Msa0756620:intron 55.0%
! GGGGTATGTTCTGGCCTTCT+GGG + chr5_2:10997563-10997582 Msa0756620:intron 55.0%
GGGACTGTGATGTCCAAAGG+AGG - chr5_2:10997931-10997950 None:intergenic 55.0%
TCCCATCGAAACGCACTCCA+TGG + chr5_2:10997947-10997966 Msa0756620:CDS 55.0%
GCCATGGAGTGCGTTTCGAT+GGG - chr5_2:10997951-10997970 None:intergenic 55.0%
! GGTGCCGGAGGTGAATGGAA+CGG - chr5_2:10994753-10994772 None:intergenic 60.0%
GTTCCATTCACCTCCGGCAC+CGG + chr5_2:10994752-10994771 Msa0756620:CDS 60.0%
! GGTAGTGGCGAGTAGAGTCG+TGG + chr5_2:10994832-10994851 Msa0756620:CDS 60.0%
GTGGCGAGTAGAGTCGTGGT+TGG + chr5_2:10994836-10994855 Msa0756620:CDS 60.0%
GAGTCGTGGTTGGGAGACAC+GGG + chr5_2:10994846-10994865 Msa0756620:CDS 60.0%
TGGTTGGGAGACACGGGATC+CGG + chr5_2:10994852-10994871 Msa0756620:CDS 60.0%
GGAGACACGGGATCCGGATT+CGG + chr5_2:10994858-10994877 Msa0756620:CDS 60.0%
ACCATGCCAATGCCGGTGCA+AGG + chr5_2:10996380-10996399 Msa0756620:CDS 60.0%
!! ACCTTGCACCGGCATTGGCA+TGG - chr5_2:10996384-10996403 None:intergenic 60.0%
TTGTCGGCAACACTGGTGCC+CGG - chr5_2:10996496-10996515 None:intergenic 60.0%
TGGCGTCCACAACTCCCTAG+TGG - chr5_2:10996674-10996693 None:intergenic 60.0%
!!! GCTTTTGGGTGGGTTGGCGT+TGG - chr5_2:10996888-10996907 None:intergenic 60.0%
! CTGGCCTTCTGGGTACAGCT+TGG + chr5_2:10997573-10997592 Msa0756620:intron 60.0%
GGCCATGGAGTGCGTTTCGA+TGG - chr5_2:10997952-10997971 None:intergenic 60.0%
TCAGGAGGAGAGTCTGGCCA+TGG - chr5_2:10997967-10997986 None:intergenic 60.0%
GGGAGTTCAGGAGGAGAGTC+TGG - chr5_2:10997973-10997992 None:intergenic 60.0%
CGGAACAGTGATTCCGGCGC+CGG - chr5_2:10994774-10994793 None:intergenic 65.0%
! CGGCGCCGGAATCACTGTTC+CGG + chr5_2:10994772-10994791 Msa0756620:CDS 65.0%
CGCCGGAATCACTGTTCCGG+TGG + chr5_2:10994775-10994794 Msa0756620:CDS 65.0%
ACGGGATCCGGATTCGGCCA+TGG + chr5_2:10994864-10994883 Msa0756620:CDS 65.0%
GATGCGGCCATGGCCGAATC+CGG - chr5_2:10994874-10994893 None:intergenic 65.0%
GATTCGGCCATGGCCGCATC+CGG + chr5_2:10994874-10994893 Msa0756620:CDS 65.0%
ACAGGATCCGGATGCGGCCA+TGG - chr5_2:10994884-10994903 None:intergenic 65.0%
ATGGCCGCATCCGGATCCTG+TGG + chr5_2:10994883-10994902 Msa0756620:CDS 65.0%
! GCAGGACCTTGCACCGGCAT+TGG - chr5_2:10996389-10996408 None:intergenic 65.0%
GTGGAGGGACTCACCGAGCA+GGG - chr5_2:10996745-10996764 None:intergenic 65.0%
!! AGAATGGGGGAAGGGGTGCC+AGG + chr5_2:10997648-10997667 Msa0756620:intron 65.0%
!! GAATGGGGGAAGGGGTGCCA+GGG + chr5_2:10997649-10997668 Msa0756620:intron 65.0%
CGCCGGCGCCGTTAAGTCAC+CGG + chr5_2:10994607-10994626 Msa0756620:CDS 70.0%
CGCCGGTGACTTAACGGCGC+CGG - chr5_2:10994612-10994631 None:intergenic 70.0%
!! AGTGATTCCGGCGCCGGTGC+CGG - chr5_2:10994768-10994787 None:intergenic 70.0%
GGTGGAGGGACTCACCGAGC+AGG - chr5_2:10996746-10996765 None:intergenic 70.0%
! GCGCCGGTGCCGGAGGTGAA+TGG - chr5_2:10994758-10994777 None:intergenic 75.0%
!! TTCACCTCCGGCACCGGCGC+CGG + chr5_2:10994758-10994777 Msa0756620:CDS 75.0%
!!! GATTCCGGCGCCGGTGCCGG+AGG - chr5_2:10994765-10994784 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10994343 10998504 10994343 ID=Msa0756620;Name=Msa0756620
chr5_2 mRNA 10994343 10998504 10994343 ID=Msa0756620-mRNA-1;Parent=Msa0756620;Name=Msa0756620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=187|1|1|1|1|1|3|343|504
chr5_2 exon 10994343 10995239 10994343 ID=Msa0756620-mRNA-1:exon:4955;Parent=Msa0756620-mRNA-1
chr5_2 exon 10996193 10996750 10996193 ID=Msa0756620-mRNA-1:exon:4956;Parent=Msa0756620-mRNA-1
chr5_2 exon 10997915 10998504 10997915 ID=Msa0756620-mRNA-1:exon:4957;Parent=Msa0756620-mRNA-1
chr5_2 five_prime_UTR 10994343 10994529 10994343 ID=Msa0756620-mRNA-1:five_prime_utr;Parent=Msa0756620-mRNA-1
chr5_2 CDS 10994530 10995239 10994530 ID=Msa0756620-mRNA-1:cds;Parent=Msa0756620-mRNA-1
chr5_2 CDS 10996193 10996750 10996193 ID=Msa0756620-mRNA-1:cds;Parent=Msa0756620-mRNA-1
chr5_2 CDS 10997915 10998161 10997915 ID=Msa0756620-mRNA-1:cds;Parent=Msa0756620-mRNA-1
chr5_2 three_prime_UTR 10998162 10998504 10998162 ID=Msa0756620-mRNA-1:three_prime_utr;Parent=Msa0756620-mRNA-1
Gene Sequence

>Msa0756620

ATGAAGCTCTCAACATTACAACAAAGTTACATCAACCGTAGAACAAACAGCTTCAGAGGCTTAGATTCAGATAACGGCGCCGGCGCCGTTAAGTCACCGGCGACAATTTTCTGGCTAGTACTTCACGGTGTTTGCTGCTTAATCAGCCTCGTTCTCGGCTTCCGATTTTCTCGTCTTGTTTTCTTCTTTCTCTTTTCAACTTCATCCACTAATATTTACACCGTTCCATTCACCTCCGGCACCGGCGCCGGAATCACTGTTCCGGTGGAAACTCAACAGAATGTTCTAACAAACGGGAGTTCGGTAGTGGCGAGTAGAGTCGTGGTTGGGAGACACGGGATCCGGATTCGGCCATGGCCGCATCCGGATCCTGTGGAAGTAATGAAAGCGCATGGAATAATCTCTAGAGTTCAAAATGAACAGAGATTGTTGTTTGGAGTGAAGAACCCTAGAAAAGTGATTGTTGTGACACCAACGTATGTGAGGACTTTTCAAGCGATGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTGCCTTATGATCTGACTTGGATTGTGGTTGAAGCTGGTGGTGTTACTAATGAGACTGCTTCAATTATTGGAAAATCTGGATTAAGGATTATTCATGTTGGGTTTAATCAGAAAATGCCCAGTTTGTGGGAGGATAGACATAAAGTTGAATCTTTGATGCGTCTTCATGCTTTAAGGATTGTGAGAAAAGAGAAGCTGGATGGAATTGTGATGTTTGCTGATGATAGTAATATGCATAATATGGAGCTGTTTGATGAAATTCAGAGTGTGAAATGGATCGGTGCTGTTTCGGTTGGAATACTCCTTCATTCTGTTGATGCAGCTGAAATTTCTTCATTGGTTCAAAAAGAAGGAGATGAGGAAACCATGCCAATGCCGGTGCAAGGTCCTGCTTGTAATGGTACTGATAAGTTGGTCGGGTGGCACACCTTCAATTCATTACGATATACGGGAAGGCGTGCAGTTTACATTGATGACCGGGCACCAGTGTTGCCGACAAAATTTGAATGGTCTGGGTTTGTGTTGAATTCCAGATTACTTTGGAAGGATGTTGACGATAAGCCAGAGTGGATTAAGGATCTTGATGCAGTGGATGGGGATGGTGAGAAGATAGAGAGTCCACTGTCTTTGCTCAAGAGTACCTCTGTGGTAGAACCACTAGGGAGTTGTGGACGCCATGTTTTGCTTTGGTGGTTGCGGGTTGAAGCTCGCACAGACAGCAAATTCCCTGCTCGATGGGTGATTGACCCTCCTTTGGACATCACAGTCCCATCGAAACGCACTCCATGGCCAGACTCTCCTCCTGAACTCCCATCTAATGAAAATGAAAAAGTGTTCGCTGCAGGCACAGAAGAGCATTCGAACACGCACACTACAAAGACTAAAACACCCAGATCCAGACGCAGTAGAAGTAAGAGAAAGCATGACACCAAAGTGATTGGTGTACAGGTCTCTACACATTCTGAACAAACCGAGATATGA
Protein sequence

>Msa0756620

MKLSTLQQSYINRRTNSFRGLDSDNGAGAVKSPATIFWLVLHGVCCLISLVLGFRFSRLVFFFLFSTSSTNIYTVPFTSGTGAGITVPVETQQNVLTNGSSVVASRVVVGRHGIRIRPWPHPDPVEVMKAHGIISRVQNEQRLLFGVKNPRKVIVVTPTYVRTFQAMHLTGVMHSLMLVPYDLTWIVVEAGGVTNETASIIGKSGLRIIHVGFNQKMPSLWEDRHKVESLMRLHALRIVRKEKLDGIVMFADDSNMHNMELFDEIQSVKWIGAVSVGILLHSVDAAEISSLVQKEGDEETMPMPVQGPACNGTDKLVGWHTFNSLRYTGRRAVYIDDRAPVLPTKFEWSGFVLNSRLLWKDVDDKPEWIKDLDAVDGDGEKIESPLSLLKSTSVVEPLGSCGRHVLLWWLRVEARTDSKFPARWVIDPPLDITVPSKRTPWPDSPPELPSNENEKVFAAGTEEHSNTHTTKTKTPRSRRSRSKRKHDTKVIGVQVSTHSEQTEI*