AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797920 MtrunA17_Chr5g0401811 98.214 504 9 0 1 504 1 504 0.0 1017
Msa0797920 MtrunA17_Chr4g0053291 68.677 514 133 9 1 501 1 499 0.0 646
Msa0797920 MtrunA17_Chr3g0140951 28.328 293 159 9 151 434 188 438 1.15e-24 106
Msa0797920 MtrunA17_Chr3g0140001 28.947 342 180 13 113 432 131 431 1.64e-23 103
Msa0797920 MtrunA17_Chr7g0263751 26.168 214 122 5 147 359 101 279 6.35e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797920 AT5G67230.1 62.868 509 162 8 1 499 1 492 0.0 645
Msa0797920 AT4G36890.1 67.253 455 131 6 1 439 1 453 0.0 608
Msa0797920 AT1G27600.2 30.201 298 156 10 150 437 139 394 3.92e-26 110
Msa0797920 AT1G27600.1 30.201 298 156 10 150 437 139 394 3.92e-26 110
Msa0797920 AT2G37090.1 24.870 386 225 21 40 416 18 347 1.97e-13 72.0

Find 152 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAGACTGCTTCAATTAT+TGG 0.098423 5_3:+10288885 Msa0797920:CDS
TCTTTCATATGAACGGATTT+AGG 0.127596 5_3:-10292173 None:intergenic
TGATGCGTCTTCATGCTTTA+AGG 0.188622 5_3:+10288991 Msa0797920:CDS
CTTCAATTCATTACGATATA+CGG 0.199782 5_3:+10290220 Msa0797920:CDS
AAGAATTTGAATTGATTAAA+AGG 0.205637 5_3:+10292015 Msa0797920:three_prime_UTR
GCTTCAATTATTGGAAAATC+TGG 0.212918 5_3:+10288894 Msa0797920:CDS
ACTTCTACTGCGTCTGGATC+TGG 0.214817 5_3:-10291863 None:intergenic
CTTTCATATGAACGGATTTA+GGG 0.237938 5_3:-10292172 None:intergenic
TTATTGGAAAATCTGGATTA+AGG 0.251089 5_3:+10288901 Msa0797920:CDS
TGCTTAATCAGCCTCGTTCT+CGG 0.309400 5_3:+10288438 Msa0797920:CDS
CCGACAAAATTTGAATGGTC+TGG 0.319336 5_3:+10290284 Msa0797920:CDS
ATGTCTATCCTCCCACAAAC+TGG 0.330083 5_3:-10288955 None:intergenic
TGATAGTAATATGCATAATA+TGG 0.344407 5_3:+10290013 Msa0797920:CDS
CCGTTCATATGAAAGATTAA+AGG 0.348115 5_3:+10292180 Msa0797920:three_prime_UTR
CGATAAGCCAGAGTGGATTA+AGG 0.360709 5_3:+10290346 Msa0797920:CDS
TGCAGCTGAAATTTCTTCAT+TGG 0.365838 5_3:+10290109 Msa0797920:CDS
AACATCCTTCCAAAGTAATC+TGG 0.378146 5_3:-10290321 None:intergenic
GGGAGTTCAGGAGGAGAGTC+TGG 0.378580 5_3:-10291763 None:intergenic
TCTCTTACTTCTACTGCGTC+TGG 0.379222 5_3:-10291869 None:intergenic
TTCTACCGGAACAGTGATTC+CGG 0.381592 5_3:-10288550 None:intergenic
CGACAAAATTTGAATGGTCT+GGG 0.388127 5_3:+10290285 Msa0797920:CDS
ATGGGTGATTGACCCTCCTT+TGG 0.392966 5_3:+10291708 Msa0797920:CDS
AATGAACAGAGATTGTTGTT+TGG 0.396717 5_3:+10288717 Msa0797920:CDS
AGGAGAAGCTGATGTCTTCT+TGG 0.397900 5_3:+10292035 Msa0797920:three_prime_UTR
TTCATTACTTCTACAGGATC+CGG 0.400347 5_3:-10288666 None:intergenic
TGCGCTTTCATTACTTCTAC+AGG 0.402323 5_3:-10288672 None:intergenic
GAACAAACCGAGATATGAAT+TGG 0.407021 5_3:+10291937 Msa0797920:exon
GATTAAGGATTATTCATGTT+GGG 0.408461 5_3:+10288916 Msa0797920:CDS
CGTTCATATGAAAGATTAAA+GGG 0.418193 5_3:+10292181 Msa0797920:three_prime_UTR
GATGCGGCCATGGCCGAATC+CGG 0.419202 5_3:-10288644 None:intergenic
CTCTGAAGCTGTTTGTTCTA+CGG 0.421760 5_3:-10288338 None:intergenic
GGAGACACGGGATCCGGATT+CGG 0.428474 5_3:+10288631 Msa0797920:CDS
GGCCATGGAGTGCGTTTCGA+TGG 0.429896 5_3:-10291742 None:intergenic
ACTTGGATTGTGGTTGAAGC+TGG 0.431515 5_3:+10288852 Msa0797920:CDS
GCGCCGGTGCCGGAGGTGAA+TGG 0.438005 5_3:-10288528 None:intergenic
AATTGTCGCCGGTGACTTAA+CGG 0.438702 5_3:-10288388 None:intergenic
TCAGAAAATGCCCAGTTTGT+GGG 0.445775 5_3:+10288944 Msa0797920:CDS
CGTATATCGTAATGAATTGA+AGG 0.445991 5_3:-10290219 None:intergenic
CTTCTACTGCGTCTGGATCT+GGG 0.446602 5_3:-10291862 None:intergenic
ATGAAATTCAGAGTGTGAAA+TGG 0.447404 5_3:+10290045 Msa0797920:CDS
GTGGCGAGTAGAGTGGTTGT+TGG 0.447670 5_3:+10288609 Msa0797920:CDS
GATTCGGCCATGGCCGCATC+CGG 0.448954 5_3:+10288647 Msa0797920:CDS
AGAAAACGAGACGAGAAAAT+CGG 0.451569 5_3:-10288464 None:intergenic
AGTGATTCCGGCGCCGGTGC+CGG 0.451879 5_3:-10288538 None:intergenic
ATCAGAAAATGCCCAGTTTG+TGG 0.453676 5_3:+10288943 Msa0797920:CDS
AACAGAACGTTCTAACAAAC+GGG 0.454410 5_3:+10288577 Msa0797920:CDS
CTGCATGCGAAAGAATGAAA+TGG 0.454711 5_3:-10292305 None:intergenic
GAATGGAACGGTGTAAATAT+TGG 0.457123 5_3:-10288511 None:intergenic
TGCAACGTTGGCTGTCTTGT+GGG 0.460080 5_3:+10292221 Msa0797920:three_prime_UTR
TTCACCTCCGGCACCGGCGC+CGG 0.461470 5_3:+10288531 Msa0797920:CDS
GGATTAAGGATTATTCATGT+TGG 0.462578 5_3:+10288915 Msa0797920:CDS
GAAATGGATCGGTGCTGTTT+CGG 0.465735 5_3:+10290061 Msa0797920:CDS
TGGCGAGTAGAGTGGTTGTT+GGG 0.470200 5_3:+10288610 Msa0797920:CDS
CAACAGAACGTTCTAACAAA+CGG 0.472323 5_3:+10288576 Msa0797920:CDS
TGTTGAATTCCAGATTACTT+TGG 0.473184 5_3:+10290312 Msa0797920:CDS
CACCAAAGTGATTGGTGTAC+AGG 0.476382 5_3:+10291900 Msa0797920:CDS
TTGTTGGGAGACACGGGATC+CGG 0.478022 5_3:+10288625 Msa0797920:CDS
CGCCGGTGACTTAACGGCGC+CGG 0.479709 5_3:-10288382 None:intergenic
CGCCGGCGCCGTTAAGTCAC+CGG 0.483048 5_3:+10288380 Msa0797920:CDS
CGGCGCCGGAATCACTGTTC+CGG 0.487450 5_3:+10288545 Msa0797920:CDS
AAGCATGACACCAAAGTGAT+TGG 0.488095 5_3:+10291892 Msa0797920:CDS
TGTGAAAGTAAGAAGCAAGT+TGG 0.490879 5_3:-10288167 None:intergenic
CCTTTAATCTTTCATATGAA+CGG 0.491162 5_3:-10292180 None:intergenic
AGATGCACCAATTCATATCT+CGG 0.491651 5_3:-10291944 None:intergenic
TACACCGTTCCATTCACCTC+CGG 0.496125 5_3:+10288519 Msa0797920:CDS
ACAGGATCCGGATGCGGCCA+TGG 0.497124 5_3:-10288654 None:intergenic
GCAGGACCTTGCACCGGCAT+TGG 0.498839 5_3:-10290161 None:intergenic
TTCAATTCATTACGATATAC+GGG 0.499087 5_3:+10290221 Msa0797920:CDS
TGTTGCCGACAAAATTTGAA+TGG 0.500655 5_3:+10290279 Msa0797920:CDS
CATCGAATAAAATTGAATAC+AGG 0.505551 5_3:-10292247 None:intergenic
GTTCCATTCACCTCCGGCAC+CGG 0.506995 5_3:+10288525 Msa0797920:CDS
CGGAACAGTGATTCCGGCGC+CGG 0.510122 5_3:-10288544 None:intergenic
GGTGGAGGGACTCACCGAGC+AGG 0.510465 5_3:-10290518 None:intergenic
GTGCAGTTTACATTGATGAC+CGG 0.511167 5_3:+10290249 Msa0797920:CDS
TTGCAACGTTGGCTGTCTTG+TGG 0.512397 5_3:+10292220 Msa0797920:three_prime_UTR
GATTGTGAGAAAAGAGAAGC+TGG 0.516119 5_3:+10289968 Msa0797920:CDS
TTGTCGGCAACACTGGTGCC+CGG 0.518942 5_3:-10290268 None:intergenic
ACCTTGCACCGGCATTGGCA+TGG 0.519908 5_3:-10290156 None:intergenic
TGGATCGGTGCTGTTTCGGT+TGG 0.520170 5_3:+10290065 Msa0797920:CDS
AAGGATCTTGATGCAGTGGA+TGG 0.529769 5_3:+10290365 Msa0797920:CDS
GCCATGGAGTGCGTTTCGAT+GGG 0.536780 5_3:-10291741 None:intergenic
GGAGAAGAAGATGGTGGTGT+TGG 0.537405 5_3:-10288146 None:intergenic
ATTCAAATTCTTGTCGCAGA+AGG 0.537501 5_3:-10292004 None:intergenic
TGGTGGAGGAAGTTGAAAAG+AGG 0.538090 5_3:-10288491 None:intergenic
GTGCAAGGTCCTGCTTGTAA+TGG 0.539674 5_3:+10290170 Msa0797920:CDS
TTTCAAGCGATGCATTTGAC+TGG 0.539811 5_3:+10288792 Msa0797920:CDS
AGAGTGGTTGTTGGGAGACA+CGG 0.540030 5_3:+10288618 Msa0797920:CDS
AGGATCTTGATGCAGTGGAT+GGG 0.542197 5_3:+10290366 Msa0797920:CDS
TCAGGAGGAGAGTCTGGCCA+TGG 0.544157 5_3:-10291757 None:intergenic
ACGTTCTGTTGAGTTTCTAC+CGG 0.546702 5_3:-10288564 None:intergenic
TGAGGAAACCATGCCAATGC+CGG 0.551614 5_3:+10290148 Msa0797920:CDS
ACCATGCCAATGCCGGTGCA+AGG 0.552760 5_3:+10290155 Msa0797920:CDS
CAGCTGCATCAACAGAATGA+AGG 0.558512 5_3:-10290094 None:intergenic
TCAAGATCCTTAATCCACTC+TGG 0.559323 5_3:-10290353 None:intergenic
AAGCAAGTTGGAGAAGAAGA+TGG 0.562027 5_3:-10288155 None:intergenic
TTGTAATGGTACTGATAAGT+TGG 0.564365 5_3:+10290184 Msa0797920:CDS
ACGGGATCCGGATTCGGCCA+TGG 0.566818 5_3:+10288637 Msa0797920:CDS
TCATTAGATGGGAGTTCAGG+AGG 0.569861 5_3:-10291772 None:intergenic
TTGTGTTTATAAGAGAATGC+TGG 0.571085 5_3:+10291981 Msa0797920:three_prime_UTR
GAATTCCAGATTACTTTGGA+AGG 0.571302 5_3:+10290316 Msa0797920:CDS
GTATGATCTGACTTGGATTG+TGG 0.571981 5_3:+10288842 Msa0797920:CDS
TGCAGTTTACATTGATGACC+GGG 0.572154 5_3:+10290250 Msa0797920:CDS
ATGGTACTGATAAGTTGGTC+GGG 0.572519 5_3:+10290189 Msa0797920:CDS
GATTCCGGCGCCGGTGCCGG+AGG 0.573917 5_3:-10288535 None:intergenic
ACTTCTACAGGATCCGGATG+CGG 0.576686 5_3:-10288660 None:intergenic
ACAATCCAAGTCAGATCATA+CGG 0.576986 5_3:-10288840 None:intergenic
AGACACGAATGCACATATGC+TGG 0.577405 5_3:-10292093 None:intergenic
GGATCTTGATGCAGTGGATG+GGG 0.580516 5_3:+10290367 Msa0797920:CDS
CGTAGAACAAACAGCTTCAG+AGG 0.580812 5_3:+10288339 Msa0797920:CDS
GACCTGTACACCAATCACTT+TGG 0.581284 5_3:-10291902 None:intergenic
TCCCATCGAAACGCACTCCA+TGG 0.588526 5_3:+10291740 Msa0797920:CDS
AATGGTACTGATAAGTTGGT+CGG 0.589439 5_3:+10290188 Msa0797920:CDS
TGGATTGTGGTTGAAGCTGG+TGG 0.591755 5_3:+10288855 Msa0797920:CDS
AACGGTGTAAATATTGGTGG+AGG 0.595356 5_3:-10288505 None:intergenic
CAGACAGCAAATTCCCTGCT+CGG 0.596900 5_3:+10290504 Msa0797920:CDS
TGTCTATCCTCCCACAAACT+GGG 0.597037 5_3:-10288954 None:intergenic
GAGTGGTTGTTGGGAGACAC+GGG 0.598857 5_3:+10288619 Msa0797920:CDS
CTTGATGCAGTGGATGGGGA+TGG 0.601002 5_3:+10290371 Msa0797920:CDS
TTCAGTAGTGGCGAGTAGAG+TGG 0.601572 5_3:+10288602 Msa0797920:CDS
GTAGAAGTAATGAAAGCGCA+TGG 0.601679 5_3:+10288675 Msa0797920:CDS
GTGAGAAAAGAGAAGCTGGA+TGG 0.604430 5_3:+10289972 Msa0797920:CDS
TGGAACGGTGTAAATATTGG+TGG 0.606101 5_3:-10288508 None:intergenic
GCAACCACCAAAGCAAAACA+TGG 0.606572 5_3:-10290466 None:intergenic
GTAGAACCACTAGGGAGTTG+TGG 0.607713 5_3:+10290440 Msa0797920:CDS
ACCTCTGTGGTAGAACCACT+AGG 0.613698 5_3:+10290431 Msa0797920:CDS
CAAGTTGGAGAAGAAGATGG+TGG 0.620394 5_3:-10288152 None:intergenic
TTAGATTCAGATAACAGCGC+CGG 0.621626 5_3:+10288363 Msa0797920:CDS
GATGGGACTGTGATGTCCAA+AGG 0.622491 5_3:-10291724 None:intergenic
AAAATCGGAAGCCGAGAACG+AGG 0.625000 5_3:-10288449 None:intergenic
GGGACTGTGATGTCCAAAGG+AGG 0.626469 5_3:-10291721 None:intergenic
ATTCATTACGATATACGGGA+AGG 0.635243 5_3:+10290225 Msa0797920:CDS
GTGGAGGGACTCACCGAGCA+GGG 0.637902 5_3:-10290517 None:intergenic
AACAAACGGGAGTTCAGTAG+TGG 0.639504 5_3:+10288590 Msa0797920:CDS
GATTAAGGATCTTGATGCAG+TGG 0.642803 5_3:+10290361 Msa0797920:CDS
TTACAAGCAGGACCTTGCAC+CGG 0.643021 5_3:-10290167 None:intergenic
GAAAATGCCCAGTTTGTGGG+AGG 0.647991 5_3:+10288947 Msa0797920:CDS
ACTAGCCAGAAAATTGTCGC+CGG 0.649362 5_3:-10288399 None:intergenic
TTGTACCGTATGATCTGACT+TGG 0.651229 5_3:+10288835 Msa0797920:CDS
CCTCTGTGGTAGAACCACTA+GGG 0.659169 5_3:+10290432 Msa0797920:CDS
TTATCAGTACCATTACAAGC+AGG 0.660972 5_3:-10290179 None:intergenic
GGTGCCGGAGGTGAATGGAA+CGG 0.663294 5_3:-10288523 None:intergenic
AGCATTCTCTTATAAACACA+AGG 0.671290 5_3:-10291979 None:intergenic
GGACTGTGATGTCCAAAGGA+GGG 0.672528 5_3:-10291720 None:intergenic
ATTCAGAGTGTGAAATGGAT+CGG 0.672674 5_3:+10290050 Msa0797920:CDS
TGAAAAGTCCTCACATACGT+TGG 0.684360 5_3:-10288774 None:intergenic
TTTGCTCAAGAGTACCTCTG+TGG 0.694643 5_3:+10290418 Msa0797920:CDS
TGGCGTCCACAACTCCCTAG+TGG 0.699177 5_3:-10290446 None:intergenic
GTACTCTTGAGCAAAGACAG+TGG 0.702361 5_3:-10290410 None:intergenic
TTGTGACACCAACGTATGTG+AGG 0.703517 5_3:+10288766 Msa0797920:CDS
GTACTGATAAGTTGGTCGGG+TGG 0.704370 5_3:+10290192 Msa0797920:CDS
ATGTTGACGATAAGCCAGAG+TGG 0.723393 5_3:+10290339 Msa0797920:CDS
CCCTAGTGGTTCTACCACAG+AGG 0.724372 5_3:-10290432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATAAAAAAAAA+GGG - chr5_3:10289887-10289906 None:intergenic 0.0%
!! AATAAAAATAATAAAAAAAA+AGG - chr5_3:10289888-10289907 None:intergenic 0.0%
!! AAAAATAATAAAAAAAAAGG+GGG - chr5_3:10289885-10289904 None:intergenic 10.0%
!! AAAAATGTAAAAGAAAAAAT+GGG - chr5_3:10292127-10292146 None:intergenic 10.0%
!! AAAAAATGTAAAAGAAAAAA+TGG - chr5_3:10292128-10292147 None:intergenic 10.0%
!!! TTTTTATTTTTTTGTGTTTG+TGG - chr5_3:10288284-10288303 None:intergenic 15.0%
!!! TTTTACTTGATTTGTTATTA+TGG + chr5_3:10289042-10289061 Msa0797920:intron 15.0%
!!! TGATTTTAGTCTTAAATTTA+TGG + chr5_3:10289544-10289563 Msa0797920:intron 15.0%
!! AAGAATTTGAATTGATTAAA+AGG + chr5_3:10292015-10292034 Msa0797920:three_prime_UTR 15.0%
!!! TTTTTTTTCCTTATTTTTCT+TGG + chr5_3:10292144-10292163 Msa0797920:three_prime_UTR 15.0%
!!! AAGTAAAAGCATAAACTAAA+AGG - chr5_3:10289030-10289049 None:intergenic 20.0%
!!! TGTAAAATTGATTTTTGTCA+TGG + chr5_3:10289453-10289472 Msa0797920:intron 20.0%
!!! TTGATTTTAACCATAAAAGT+GGG - chr5_3:10289622-10289641 None:intergenic 20.0%
!!! ATTGATTTTAACCATAAAAG+TGG - chr5_3:10289623-10289642 None:intergenic 20.0%
!! TGATAGTAATATGCATAATA+TGG + chr5_3:10290013-10290032 Msa0797920:CDS 20.0%
!!! GTCAAACAATTCAAATTTTA+GGG - chr5_3:10290704-10290723 None:intergenic 20.0%
!!! TGTCAAACAATTCAAATTTT+AGG - chr5_3:10290705-10290724 None:intergenic 20.0%
!! ATTAAGATAGTCATGATTAT+AGG - chr5_3:10290817-10290836 None:intergenic 20.0%
!! ATAATCATGACTATCTTAAT+AGG + chr5_3:10290817-10290836 Msa0797920:intron 20.0%
!! AATGAAAGATTCAATTTATG+TGG + chr5_3:10291086-10291105 Msa0797920:intron 20.0%
!! ATGAAAGATTCAATTTATGT+GGG + chr5_3:10291087-10291106 Msa0797920:intron 20.0%
!! ATACAATTGGATATAATGAT+TGG + chr5_3:10291212-10291231 Msa0797920:intron 20.0%
!! TACAATTGGATATAATGATT+GGG + chr5_3:10291213-10291232 Msa0797920:intron 20.0%
!!! ATTTATTTCTAGGTTCTTAT+AGG + chr5_3:10291545-10291564 Msa0797920:intron 20.0%
!!! CTTTTTCATTTTCATTAGAT+GGG - chr5_3:10291786-10291805 None:intergenic 20.0%
!!! ACTTTTTCATTTTCATTAGA+TGG - chr5_3:10291787-10291806 None:intergenic 20.0%
! TTATTGGAAAATCTGGATTA+AGG + chr5_3:10288901-10288920 Msa0797920:CDS 25.0%
! GATTAAGGATTATTCATGTT+GGG + chr5_3:10288916-10288935 Msa0797920:CDS 25.0%
!! ATGTGAAAGGATTTTATGTT+TGG + chr5_3:10289289-10289308 Msa0797920:intron 25.0%
! TGAATTGAATGACAAGTATA+AGG + chr5_3:10289329-10289348 Msa0797920:intron 25.0%
!!! TATTTGGTTTCAAGTTTCTA+GGG + chr5_3:10289410-10289429 Msa0797920:intron 25.0%
!!! AAATTGATTTTTGTCATGGT+TGG + chr5_3:10289457-10289476 Msa0797920:intron 25.0%
!! AAGTTAGAATTTGCAGTTTT+TGG + chr5_3:10289511-10289530 Msa0797920:intron 25.0%
! TGAATGTATTTGTGTAAAAG+TGG - chr5_3:10289576-10289595 None:intergenic 25.0%
! CTTCAATTCATTACGATATA+CGG + chr5_3:10290220-10290239 Msa0797920:CDS 25.0%
! TTCAATTCATTACGATATAC+GGG + chr5_3:10290221-10290240 Msa0797920:CDS 25.0%
!! TGAAAACGTTTAGAATATAG+AGG - chr5_3:10290542-10290561 None:intergenic 25.0%
!!! TGTTTTTTACACTATCGTAT+TGG - chr5_3:10290634-10290653 None:intergenic 25.0%
!!! AAATTTTAGGGAGTAGTTTT+TGG - chr5_3:10290692-10290711 None:intergenic 25.0%
! ATTCTAAGCAATGTTCTTAT+GGG - chr5_3:10290956-10290975 None:intergenic 25.0%
! TATTCTAAGCAATGTTCTTA+TGG - chr5_3:10290957-10290976 None:intergenic 25.0%
! ATAACATTTCTACTCCAATA+TGG - chr5_3:10290988-10291007 None:intergenic 25.0%
! TATTGGAGTAGAAATGTTAT+AGG + chr5_3:10290988-10291007 Msa0797920:intron 25.0%
! ACTTTATGACTTTCTTATAC+AGG + chr5_3:10291115-10291134 Msa0797920:intron 25.0%
!!! TCTAACAAATCCTATTTTTC+TGG - chr5_3:10291270-10291289 None:intergenic 25.0%
!!! GATTTGTTAGATCAAAATGT+TGG + chr5_3:10291279-10291298 Msa0797920:intron 25.0%
!! TTAGATCAAAATGTTGGTAA+CGG + chr5_3:10291285-10291304 Msa0797920:intron 25.0%
! GAAATCATTAACAAGTGATT+TGG - chr5_3:10291333-10291352 None:intergenic 25.0%
!! CAAATTTTATGTCTGAGAAT+GGG + chr5_3:10291426-10291445 Msa0797920:intron 25.0%
!! AAATTTTATGTCTGAGAATG+GGG + chr5_3:10291427-10291446 Msa0797920:intron 25.0%
! ATGTTGTTAAAATGTGATCA+TGG + chr5_3:10291521-10291540 Msa0797920:intron 25.0%
!! TGATCATGGAATTTATTTCT+AGG + chr5_3:10291535-10291554 Msa0797920:intron 25.0%
!! TTTTGTACTTCAATTTTCGA+CGG + chr5_3:10291574-10291593 Msa0797920:intron 25.0%
! CAAATATGCAAATAAATGCA+AGG - chr5_3:10291642-10291661 None:intergenic 25.0%
!!! TTTTTCCTTATTTTTCTTGG+AGG + chr5_3:10292147-10292166 Msa0797920:three_prime_UTR 25.0%
! CCTTTAATCTTTCATATGAA+CGG - chr5_3:10292183-10292202 None:intergenic 25.0%
! CGTTCATATGAAAGATTAAA+GGG + chr5_3:10292181-10292200 Msa0797920:three_prime_UTR 25.0%
! CATCGAATAAAATTGAATAC+AGG - chr5_3:10292250-10292269 None:intergenic 25.0%
! TTTTGTGTTTGTGGATGTTA+AGG - chr5_3:10288275-10288294 None:intergenic 30.0%
! AATGAACAGAGATTGTTGTT+TGG + chr5_3:10288717-10288736 Msa0797920:CDS 30.0%
!! TCACAACAATCACTTTTCTA+GGG - chr5_3:10288752-10288771 None:intergenic 30.0%
AATGAGACTGCTTCAATTAT+TGG + chr5_3:10288885-10288904 Msa0797920:CDS 30.0%
GCTTCAATTATTGGAAAATC+TGG + chr5_3:10288894-10288913 Msa0797920:CDS 30.0%
GGATTAAGGATTATTCATGT+TGG + chr5_3:10288915-10288934 Msa0797920:CDS 30.0%
GATTTGCAGTAGAATCTTTA+TGG + chr5_3:10289078-10289097 Msa0797920:intron 30.0%
TGTTTGAATAATTAGTGTCG+CGG + chr5_3:10289106-10289125 Msa0797920:intron 30.0%
ATGATTGAATATGCCAAATG+TGG + chr5_3:10289176-10289195 Msa0797920:intron 30.0%
AATATGCCAAATGTGGTTTA+GGG + chr5_3:10289183-10289202 Msa0797920:intron 30.0%
!! TGATTCTGTGAAGTTGATTT+TGG + chr5_3:10289248-10289267 Msa0797920:intron 30.0%
AGTGAATTGTTAGATGTGAA+AGG + chr5_3:10289276-10289295 Msa0797920:intron 30.0%
!! GTATTTGGTTTCAAGTTTCT+AGG + chr5_3:10289409-10289428 Msa0797920:intron 30.0%
CAAGTAGAATTCATTCTACA+AGG - chr5_3:10289491-10289510 None:intergenic 30.0%
!! TTACATTCAACCCACTTTTA+TGG + chr5_3:10289609-10289628 Msa0797920:intron 30.0%
TATATGTTTGATTCCACTTC+TGG - chr5_3:10289676-10289695 None:intergenic 30.0%
GCATTACAAGGTTTCAAAAA+AGG - chr5_3:10289766-10289785 None:intergenic 30.0%
ATTAAGTCAAACGCATTACA+AGG - chr5_3:10289778-10289797 None:intergenic 30.0%
CACAAGGAAAAATCAACAAA+AGG - chr5_3:10289939-10289958 None:intergenic 30.0%
!!! TTGTTGATTTTTCCTTGTGA+TGG + chr5_3:10289940-10289959 Msa0797920:intron 30.0%
ATGAAATTCAGAGTGTGAAA+TGG + chr5_3:10290045-10290064 Msa0797920:CDS 30.0%
!! TCTTCATTGGTTCAAAAAGA+AGG + chr5_3:10290122-10290141 Msa0797920:CDS 30.0%
!! TTGTAATGGTACTGATAAGT+TGG + chr5_3:10290184-10290203 Msa0797920:CDS 30.0%
CGTATATCGTAATGAATTGA+AGG - chr5_3:10290222-10290241 None:intergenic 30.0%
TGTTGAATTCCAGATTACTT+TGG + chr5_3:10290312-10290331 Msa0797920:CDS 30.0%
! AAACGTTTAGAATATAGAGG+TGG - chr5_3:10290539-10290558 None:intergenic 30.0%
GTTTGGCAAATGAAAATTAC+GGG - chr5_3:10290571-10290590 None:intergenic 30.0%
CGTTTGGCAAATGAAAATTA+CGG - chr5_3:10290572-10290591 None:intergenic 30.0%
CATAGAAATAAGACATCGTT+TGG - chr5_3:10290588-10290607 None:intergenic 30.0%
TAAGTAAGAACTACATAAGC+TGG - chr5_3:10290901-10290920 None:intergenic 30.0%
TTGAAAAAAATTCCGCACAA+AGG + chr5_3:10291058-10291077 Msa0797920:intron 30.0%
TGAAAAAAATTCCGCACAAA+GGG + chr5_3:10291059-10291078 Msa0797920:intron 30.0%
ATCAGTCTCTAATTGTATGT+CGG + chr5_3:10291181-10291200 Msa0797920:intron 30.0%
AATTGGATATAATGATTGGG+TGG + chr5_3:10291216-10291235 Msa0797920:intron 30.0%
ATTGGATATAATGATTGGGT+GGG + chr5_3:10291217-10291236 Msa0797920:intron 30.0%
!!! AATCCTATTTTTCTGGAGTT+AGG - chr5_3:10291263-10291282 None:intergenic 30.0%
! TGCTGTGTTCTTAATAGTTT+TGG - chr5_3:10291408-10291427 None:intergenic 30.0%
! GCAAATTTTATGTCTGAGAA+TGG + chr5_3:10291425-10291444 Msa0797920:intron 30.0%
! AATTTTATGTCTGAGAATGG+GGG + chr5_3:10291428-10291447 Msa0797920:intron 30.0%
TTGCACTAATTGTAGAAGTA+GGG - chr5_3:10291468-10291487 None:intergenic 30.0%
ATTGCACTAATTGTAGAAGT+AGG - chr5_3:10291469-10291488 None:intergenic 30.0%
AATTTGACATCATGTGTGTT+TGG + chr5_3:10291494-10291513 Msa0797920:intron 30.0%
! TTTGTACTTCAATTTTCGAC+GGG + chr5_3:10291575-10291594 Msa0797920:intron 30.0%
TACATATTCCATGCACTATT+TGG - chr5_3:10291605-10291624 None:intergenic 30.0%
GAAATAGCATCATATAGTCA+GGG - chr5_3:10291682-10291701 None:intergenic 30.0%
TGAAATAGCATCATATAGTC+AGG - chr5_3:10291683-10291702 None:intergenic 30.0%
AGCATTCTCTTATAAACACA+AGG - chr5_3:10291982-10292001 None:intergenic 30.0%
TTGTGTTTATAAGAGAATGC+TGG + chr5_3:10291981-10292000 Msa0797920:three_prime_UTR 30.0%
! ATCTGTTGAGAAGCTTTTTA+TGG + chr5_3:10292066-10292085 Msa0797920:three_prime_UTR 30.0%
! CTTTCATATGAACGGATTTA+GGG - chr5_3:10292175-10292194 None:intergenic 30.0%
! TCTTTCATATGAACGGATTT+AGG - chr5_3:10292176-10292195 None:intergenic 30.0%
CCGTTCATATGAAAGATTAA+AGG + chr5_3:10292180-10292199 Msa0797920:three_prime_UTR 30.0%
TGTGAAAGTAAGAAGCAAGT+TGG - chr5_3:10288170-10288189 None:intergenic 35.0%
!!! ATTTTCTGGCTAGTACTTCA+CGG + chr5_3:10288408-10288427 Msa0797920:CDS 35.0%
AGAAAACGAGACGAGAAAAT+CGG - chr5_3:10288467-10288486 None:intergenic 35.0%
GAATGGAACGGTGTAAATAT+TGG - chr5_3:10288514-10288533 None:intergenic 35.0%
CAACAGAACGTTCTAACAAA+CGG + chr5_3:10288576-10288595 Msa0797920:CDS 35.0%
AACAGAACGTTCTAACAAAC+GGG + chr5_3:10288577-10288596 Msa0797920:CDS 35.0%
TTCATTACTTCTACAGGATC+CGG - chr5_3:10288669-10288688 None:intergenic 35.0%
!! GTCACAACAATCACTTTTCT+AGG - chr5_3:10288753-10288772 None:intergenic 35.0%
ACAATCCAAGTCAGATCATA+CGG - chr5_3:10288843-10288862 None:intergenic 35.0%
AATTAGTGTCGCGGTATTTA+TGG + chr5_3:10289115-10289134 Msa0797920:intron 35.0%
CATGATTCTCCGCAATATAA+GGG - chr5_3:10289159-10289178 None:intergenic 35.0%
TCATGATTCTCCGCAATATA+AGG - chr5_3:10289160-10289179 None:intergenic 35.0%
GAATATGCCAAATGTGGTTT+AGG + chr5_3:10289182-10289201 Msa0797920:intron 35.0%
!! TTCTAGCTTCAAGTCAGAAT+CGG + chr5_3:10289385-10289404 Msa0797920:intron 35.0%
TTCACAACAAGACAACAATC+TGG - chr5_3:10289743-10289762 None:intergenic 35.0%
!! ATTTTTCCTTGTGATGGAAC+AGG + chr5_3:10289946-10289965 Msa0797920:intron 35.0%
ATTCAGAGTGTGAAATGGAT+CGG + chr5_3:10290050-10290069 Msa0797920:CDS 35.0%
TGCAGCTGAAATTTCTTCAT+TGG + chr5_3:10290109-10290128 Msa0797920:CDS 35.0%
TTATCAGTACCATTACAAGC+AGG - chr5_3:10290182-10290201 None:intergenic 35.0%
!! AATGGTACTGATAAGTTGGT+CGG + chr5_3:10290188-10290207 Msa0797920:CDS 35.0%
ATTCATTACGATATACGGGA+AGG + chr5_3:10290225-10290244 Msa0797920:CDS 35.0%
TGTTGCCGACAAAATTTGAA+TGG + chr5_3:10290279-10290298 Msa0797920:CDS 35.0%
! CCAGACCATTCAAATTTTGT+CGG - chr5_3:10290287-10290306 None:intergenic 35.0%
CGACAAAATTTGAATGGTCT+GGG + chr5_3:10290285-10290304 Msa0797920:CDS 35.0%
GAATTCCAGATTACTTTGGA+AGG + chr5_3:10290316-10290335 Msa0797920:CDS 35.0%
AACATCCTTCCAAAGTAATC+TGG - chr5_3:10290324-10290343 None:intergenic 35.0%
! GTTTAGAATATAGAGGTGGA+GGG - chr5_3:10290535-10290554 None:intergenic 35.0%
!!! GTTTTTGGCTTTGAGCTTTT+GGG - chr5_3:10290677-10290696 None:intergenic 35.0%
!!! AGTTTTTGGCTTTGAGCTTT+TGG - chr5_3:10290678-10290697 None:intergenic 35.0%
! GTAACTGCTGAGTTTTCTTT+CGG - chr5_3:10290773-10290792 None:intergenic 35.0%
AGAATACACTGCTACCATAT+TGG + chr5_3:10290971-10290990 Msa0797920:intron 35.0%
TACTGTCTAGTGATAATAGC+TGG + chr5_3:10291034-10291053 Msa0797920:intron 35.0%
! TTTCATTTTCTCCCTTTGTG+CGG - chr5_3:10291073-10291092 None:intergenic 35.0%
TTACTATACAATCAGCCTGT+AGG - chr5_3:10291141-10291160 None:intergenic 35.0%
TCAGTCTCTAATTGTATGTC+GGG + chr5_3:10291182-10291201 Msa0797920:intron 35.0%
GTCGGGTTAATTGATACAAT+TGG + chr5_3:10291199-10291218 Msa0797920:intron 35.0%
GCTGAAGTCTATGATCAAAT+AGG - chr5_3:10291311-10291330 None:intergenic 35.0%
! TCACTTGTTAATGATTTCCC+AGG + chr5_3:10291335-10291354 Msa0797920:intron 35.0%
! CACTTGTTAATGATTTCCCA+GGG + chr5_3:10291336-10291355 Msa0797920:intron 35.0%
! ACTTGTTAATGATTTCCCAG+GGG + chr5_3:10291337-10291356 Msa0797920:intron 35.0%
TTTCTAGGTTCTTATAGGTC+AGG + chr5_3:10291550-10291569 Msa0797920:intron 35.0%
CATCATATAGTCAGGGATAT+AGG - chr5_3:10291675-10291694 None:intergenic 35.0%
!! ATGATGCTATTTCATGCAGA+TGG + chr5_3:10291689-10291708 Msa0797920:intron 35.0%
!! TGATGCTATTTCATGCAGAT+GGG + chr5_3:10291690-10291709 Msa0797920:intron 35.0%
! TTTTCATTAGATGGGAGTTC+AGG - chr5_3:10291778-10291797 None:intergenic 35.0%
GAACAAACCGAGATATGAAT+TGG + chr5_3:10291937-10291956 Msa0797920:exon 35.0%
AGATGCACCAATTCATATCT+CGG - chr5_3:10291947-10291966 None:intergenic 35.0%
ATTCAAATTCTTGTCGCAGA+AGG - chr5_3:10292007-10292026 None:intergenic 35.0%
! GTTGAGAAGCTTTTTATGGT+TGG + chr5_3:10292070-10292089 Msa0797920:three_prime_UTR 35.0%
!!! TCAACTTAGTTTTGCAACGT+TGG + chr5_3:10292209-10292228 Msa0797920:three_prime_UTR 35.0%
!!! GTTGGCTTTTTGTAGTTTGG+TGG - chr5_3:10288131-10288150 None:intergenic 40.0%
!!! GGTGTTGGCTTTTTGTAGTT+TGG - chr5_3:10288134-10288153 None:intergenic 40.0%
! AAGCAAGTTGGAGAAGAAGA+TGG - chr5_3:10288158-10288177 None:intergenic 40.0%
!! CTCTGAAGCTGTTTGTTCTA+CGG - chr5_3:10288341-10288360 None:intergenic 40.0%
TTAGATTCAGATAACAGCGC+CGG + chr5_3:10288363-10288382 Msa0797920:CDS 40.0%
AACGGTGTAAATATTGGTGG+AGG - chr5_3:10288508-10288527 None:intergenic 40.0%
TGGAACGGTGTAAATATTGG+TGG - chr5_3:10288511-10288530 None:intergenic 40.0%
ACGTTCTGTTGAGTTTCTAC+CGG - chr5_3:10288567-10288586 None:intergenic 40.0%
TGCGCTTTCATTACTTCTAC+AGG - chr5_3:10288675-10288694 None:intergenic 40.0%
! GTAGAAGTAATGAAAGCGCA+TGG + chr5_3:10288675-10288694 Msa0797920:CDS 40.0%
TGAAAAGTCCTCACATACGT+TGG - chr5_3:10288777-10288796 None:intergenic 40.0%
TTTCAAGCGATGCATTTGAC+TGG + chr5_3:10288792-10288811 Msa0797920:CDS 40.0%
TTGTACCGTATGATCTGACT+TGG + chr5_3:10288835-10288854 Msa0797920:CDS 40.0%
!! GTATGATCTGACTTGGATTG+TGG + chr5_3:10288842-10288861 Msa0797920:CDS 40.0%
ATCAGAAAATGCCCAGTTTG+TGG + chr5_3:10288943-10288962 Msa0797920:CDS 40.0%
TCAGAAAATGCCCAGTTTGT+GGG + chr5_3:10288944-10288963 Msa0797920:CDS 40.0%
TGATGCGTCTTCATGCTTTA+AGG + chr5_3:10288991-10289010 Msa0797920:CDS 40.0%
TGTCACGATCCCTTATATTG+CGG + chr5_3:10289147-10289166 Msa0797920:intron 40.0%
AACACACCCTAAACCACATT+TGG - chr5_3:10289192-10289211 None:intergenic 40.0%
! AATGTGGTTTAGGGTGTGTT+TGG + chr5_3:10289192-10289211 Msa0797920:intron 40.0%
CAAGTCAGAATCGGTGTATT+TGG + chr5_3:10289394-10289413 Msa0797920:intron 40.0%
GATTGTGAGAAAAGAGAAGC+TGG + chr5_3:10289968-10289987 Msa0797920:CDS 40.0%
GGTTCAAAAAGAAGGAGATG+AGG + chr5_3:10290130-10290149 Msa0797920:CDS 40.0%
!! ATGGTACTGATAAGTTGGTC+GGG + chr5_3:10290189-10290208 Msa0797920:CDS 40.0%
! GTGCAGTTTACATTGATGAC+CGG + chr5_3:10290249-10290268 Msa0797920:CDS 40.0%
! TGCAGTTTACATTGATGACC+GGG + chr5_3:10290250-10290269 Msa0797920:CDS 40.0%
! TCAAATTTTGTCGGCAACAC+TGG - chr5_3:10290278-10290297 None:intergenic 40.0%
CCGACAAAATTTGAATGGTC+TGG + chr5_3:10290284-10290303 Msa0797920:CDS 40.0%
TCAAGATCCTTAATCCACTC+TGG - chr5_3:10290356-10290375 None:intergenic 40.0%
GATTAAGGATCTTGATGCAG+TGG + chr5_3:10290361-10290380 Msa0797920:CDS 40.0%
!! ATGTTTTGCTTTGGTGGTTG+CGG + chr5_3:10290468-10290487 Msa0797920:CDS 40.0%
! CGTTTAGAATATAGAGGTGG+AGG - chr5_3:10290536-10290555 None:intergenic 40.0%
! CTCAGCAGTTACAGTTTTTG+TGG + chr5_3:10290781-10290800 Msa0797920:intron 40.0%
TGGGCATCATGTGATGATAT+AGG + chr5_3:10290862-10290881 Msa0797920:intron 40.0%
TTACTTAAGCACCCACTACA+AGG + chr5_3:10290914-10290933 Msa0797920:intron 40.0%
TTATGGGTCAATGTGACTAG+AGG - chr5_3:10290940-10290959 None:intergenic 40.0%
ACTTTCTTATACAGGCCTAC+AGG + chr5_3:10291123-10291142 Msa0797920:intron 40.0%
ATAATGATTGGGTGGGTGAT+AGG + chr5_3:10291224-10291243 Msa0797920:intron 40.0%
GCACCTAACTCCAGAAAAAT+AGG + chr5_3:10291257-10291276 Msa0797920:intron 40.0%
!! AATGAAAAAGTGTTCGCTGC+AGG + chr5_3:10291796-10291815 Msa0797920:CDS 40.0%
AAGCATGACACCAAAGTGAT+TGG + chr5_3:10291892-10291911 Msa0797920:CDS 40.0%
! CAAGTTGGAGAAGAAGATGG+TGG - chr5_3:10288155-10288174 None:intergenic 45.0%
CGTAGAACAAACAGCTTCAG+AGG + chr5_3:10288339-10288358 Msa0797920:CDS 45.0%
AATTGTCGCCGGTGACTTAA+CGG - chr5_3:10288391-10288410 None:intergenic 45.0%
ACTAGCCAGAAAATTGTCGC+CGG - chr5_3:10288402-10288421 None:intergenic 45.0%
TGCTTAATCAGCCTCGTTCT+CGG + chr5_3:10288438-10288457 Msa0797920:CDS 45.0%
TGGTGGAGGAAGTTGAAAAG+AGG - chr5_3:10288494-10288513 None:intergenic 45.0%
TTCTACCGGAACAGTGATTC+CGG - chr5_3:10288553-10288572 None:intergenic 45.0%
AACAAACGGGAGTTCAGTAG+TGG + chr5_3:10288590-10288609 Msa0797920:CDS 45.0%
TTGTGACACCAACGTATGTG+AGG + chr5_3:10288766-10288785 Msa0797920:CDS 45.0%
ACTTGGATTGTGGTTGAAGC+TGG + chr5_3:10288852-10288871 Msa0797920:CDS 45.0%
TGTCTATCCTCCCACAAACT+GGG - chr5_3:10288957-10288976 None:intergenic 45.0%
ATGTCTATCCTCCCACAAAC+TGG - chr5_3:10288958-10288977 None:intergenic 45.0%
!! TTAGGGTGTGTTTGGTTCTG+TGG + chr5_3:10289200-10289219 Msa0797920:intron 45.0%
! AGGGTCAAAGTCGATTCTAG+AGG + chr5_3:10289429-10289448 Msa0797920:intron 45.0%
! AATTTTGCGTGCTCCAGAAG+TGG + chr5_3:10289660-10289679 Msa0797920:intron 45.0%
CACAATCCTGTTCCATCACA+AGG - chr5_3:10289955-10289974 None:intergenic 45.0%
GTGAGAAAAGAGAAGCTGGA+TGG + chr5_3:10289972-10289991 Msa0797920:CDS 45.0%
!! GAAATGGATCGGTGCTGTTT+CGG + chr5_3:10290061-10290080 Msa0797920:CDS 45.0%
CAGCTGCATCAACAGAATGA+AGG - chr5_3:10290097-10290116 None:intergenic 45.0%
ATGTTGACGATAAGCCAGAG+TGG + chr5_3:10290339-10290358 Msa0797920:CDS 45.0%
!! CGATAAGCCAGAGTGGATTA+AGG + chr5_3:10290346-10290365 Msa0797920:CDS 45.0%
AAGGATCTTGATGCAGTGGA+TGG + chr5_3:10290365-10290384 Msa0797920:CDS 45.0%
AGGATCTTGATGCAGTGGAT+GGG + chr5_3:10290366-10290385 Msa0797920:CDS 45.0%
GTACTCTTGAGCAAAGACAG+TGG - chr5_3:10290413-10290432 None:intergenic 45.0%
!! TTTGCTCAAGAGTACCTCTG+TGG + chr5_3:10290418-10290437 Msa0797920:CDS 45.0%
GCAACCACCAAAGCAAAACA+TGG - chr5_3:10290469-10290488 None:intergenic 45.0%
!! TGTTTTGCTTTGGTGGTTGC+GGG + chr5_3:10290469-10290488 Msa0797920:CDS 45.0%
!!! TTGGCTTTGAGCTTTTGGGT+GGG - chr5_3:10290673-10290692 None:intergenic 45.0%
!!! TTTGGCTTTGAGCTTTTGGG+TGG - chr5_3:10290674-10290693 None:intergenic 45.0%
! TAGCTGCATGCACTGATACT+TGG + chr5_3:10290842-10290861 Msa0797920:intron 45.0%
! AGCTGCATGCACTGATACTT+GGG + chr5_3:10290843-10290862 Msa0797920:intron 45.0%
!! TTTCTGGAGTTAGGTGCTAC+TGG - chr5_3:10291254-10291273 None:intergenic 45.0%
AAATCCAAGCTGTACCCAGA+AGG - chr5_3:10291373-10291392 None:intergenic 45.0%
TTATGTCTGAGAATGGGGGA+AGG + chr5_3:10291432-10291451 Msa0797920:intron 45.0%
TATGTCTGAGAATGGGGGAA+GGG + chr5_3:10291433-10291452 Msa0797920:intron 45.0%
TAATTGTAGAAGTAGGGCCC+TGG - chr5_3:10291462-10291481 None:intergenic 45.0%
TCATTAGATGGGAGTTCAGG+AGG - chr5_3:10291775-10291794 None:intergenic 45.0%
TCTCTTACTTCTACTGCGTC+TGG - chr5_3:10291872-10291891 None:intergenic 45.0%
CACCAAAGTGATTGGTGTAC+AGG + chr5_3:10291900-10291919 Msa0797920:CDS 45.0%
GACCTGTACACCAATCACTT+TGG - chr5_3:10291905-10291924 None:intergenic 45.0%
AGGAGAAGCTGATGTCTTCT+TGG + chr5_3:10292035-10292054 Msa0797920:three_prime_UTR 45.0%
AGACACGAATGCACATATGC+TGG - chr5_3:10292096-10292115 None:intergenic 45.0%
GGGCACCTCCAAGAAAAATA+AGG - chr5_3:10292155-10292174 None:intergenic 45.0%
!! TAAAAATAATAAAAAAAAAG+GGG - chr5_3:10289886-10289905 None:intergenic 5.0%
! GGAGAAGAAGATGGTGGTGT+TGG - chr5_3:10288149-10288168 None:intergenic 50.0%
! AGTCACCGGCGACAATTTTC+TGG + chr5_3:10288394-10288413 Msa0797920:CDS 50.0%
AAAATCGGAAGCCGAGAACG+AGG - chr5_3:10288452-10288471 None:intergenic 50.0%
TACACCGTTCCATTCACCTC+CGG + chr5_3:10288519-10288538 Msa0797920:CDS 50.0%
TTCAGTAGTGGCGAGTAGAG+TGG + chr5_3:10288602-10288621 Msa0797920:CDS 50.0%
TGGCGAGTAGAGTGGTTGTT+GGG + chr5_3:10288610-10288629 Msa0797920:CDS 50.0%
AGAGTGGTTGTTGGGAGACA+CGG + chr5_3:10288618-10288637 Msa0797920:CDS 50.0%
ACTTCTACAGGATCCGGATG+CGG - chr5_3:10288663-10288682 None:intergenic 50.0%
TGGATTGTGGTTGAAGCTGG+TGG + chr5_3:10288855-10288874 Msa0797920:CDS 50.0%
GAAAATGCCCAGTTTGTGGG+AGG + chr5_3:10288947-10288966 Msa0797920:CDS 50.0%
TGAGGAAACCATGCCAATGC+CGG + chr5_3:10290148-10290167 Msa0797920:CDS 50.0%
TTACAAGCAGGACCTTGCAC+CGG - chr5_3:10290170-10290189 None:intergenic 50.0%
GTGCAAGGTCCTGCTTGTAA+TGG + chr5_3:10290170-10290189 Msa0797920:CDS 50.0%
!! GTACTGATAAGTTGGTCGGG+TGG + chr5_3:10290192-10290211 Msa0797920:CDS 50.0%
GGATCTTGATGCAGTGGATG+GGG + chr5_3:10290367-10290386 Msa0797920:CDS 50.0%
ACCTCTGTGGTAGAACCACT+AGG + chr5_3:10290431-10290450 Msa0797920:CDS 50.0%
CCTCTGTGGTAGAACCACTA+GGG + chr5_3:10290432-10290451 Msa0797920:CDS 50.0%
GTAGAACCACTAGGGAGTTG+TGG + chr5_3:10290440-10290459 Msa0797920:CDS 50.0%
! GTGGACGCCATGTTTTGCTT+TGG + chr5_3:10290459-10290478 Msa0797920:CDS 50.0%
! GACGCCATGTTTTGCTTTGG+TGG + chr5_3:10290462-10290481 Msa0797920:CDS 50.0%
CAGACAGCAAATTCCCTGCT+CGG + chr5_3:10290504-10290523 Msa0797920:CDS 50.0%
!! CTTTGAGCTTTTGGGTGGGT+TGG - chr5_3:10290669-10290688 None:intergenic 50.0%
! GTGACTAGAGGCCTTGTAGT+GGG - chr5_3:10290928-10290947 None:intergenic 50.0%
! TGTGACTAGAGGCCTTGTAG+TGG - chr5_3:10290929-10290948 None:intergenic 50.0%
! GATTTCCCAGGGGTATGTTC+TGG + chr5_3:10291347-10291366 Msa0797920:intron 50.0%
ATGTCTGAGAATGGGGGAAG+GGG + chr5_3:10291434-10291453 Msa0797920:intron 50.0%
CGGGTTGTCCAAATAGTGCA+TGG + chr5_3:10291594-10291613 Msa0797920:intron 50.0%
ATGGGTGATTGACCCTCCTT+TGG + chr5_3:10291708-10291727 Msa0797920:CDS 50.0%
GGACTGTGATGTCCAAAGGA+GGG - chr5_3:10291723-10291742 None:intergenic 50.0%
GATGGGACTGTGATGTCCAA+AGG - chr5_3:10291727-10291746 None:intergenic 50.0%
CTTCTACTGCGTCTGGATCT+GGG - chr5_3:10291865-10291884 None:intergenic 50.0%
ACTTCTACTGCGTCTGGATC+TGG - chr5_3:10291866-10291885 None:intergenic 50.0%
! TTGCAACGTTGGCTGTCTTG+TGG + chr5_3:10292220-10292239 Msa0797920:three_prime_UTR 50.0%
! TGCAACGTTGGCTGTCTTGT+GGG + chr5_3:10292221-10292240 Msa0797920:three_prime_UTR 50.0%
GTGGCGAGTAGAGTGGTTGT+TGG + chr5_3:10288609-10288628 Msa0797920:CDS 55.0%
GAGTGGTTGTTGGGAGACAC+GGG + chr5_3:10288619-10288638 Msa0797920:CDS 55.0%
TTGTTGGGAGACACGGGATC+CGG + chr5_3:10288625-10288644 Msa0797920:CDS 55.0%
!! TGGATCGGTGCTGTTTCGGT+TGG + chr5_3:10290065-10290084 Msa0797920:CDS 55.0%
CTTGATGCAGTGGATGGGGA+TGG + chr5_3:10290371-10290390 Msa0797920:CDS 55.0%
! CCCTAGTGGTTCTACCACAG+AGG - chr5_3:10290435-10290454 None:intergenic 55.0%
GAAGGCCAGAACATACCCCT+GGG - chr5_3:10291355-10291374 None:intergenic 55.0%
AGAAGGCCAGAACATACCCC+TGG - chr5_3:10291356-10291375 None:intergenic 55.0%
! AGGGGTATGTTCTGGCCTTC+TGG + chr5_3:10291355-10291374 Msa0797920:intron 55.0%
! GGGGTATGTTCTGGCCTTCT+GGG + chr5_3:10291356-10291375 Msa0797920:intron 55.0%
GGGACTGTGATGTCCAAAGG+AGG - chr5_3:10291724-10291743 None:intergenic 55.0%
TCCCATCGAAACGCACTCCA+TGG + chr5_3:10291740-10291759 Msa0797920:CDS 55.0%
GCCATGGAGTGCGTTTCGAT+GGG - chr5_3:10291744-10291763 None:intergenic 55.0%
! GGTGCCGGAGGTGAATGGAA+CGG - chr5_3:10288526-10288545 None:intergenic 60.0%
GTTCCATTCACCTCCGGCAC+CGG + chr5_3:10288525-10288544 Msa0797920:CDS 60.0%
GGAGACACGGGATCCGGATT+CGG + chr5_3:10288631-10288650 Msa0797920:CDS 60.0%
ACCATGCCAATGCCGGTGCA+AGG + chr5_3:10290155-10290174 Msa0797920:CDS 60.0%
!! ACCTTGCACCGGCATTGGCA+TGG - chr5_3:10290159-10290178 None:intergenic 60.0%
TTGTCGGCAACACTGGTGCC+CGG - chr5_3:10290271-10290290 None:intergenic 60.0%
TGGCGTCCACAACTCCCTAG+TGG - chr5_3:10290449-10290468 None:intergenic 60.0%
!!! GCTTTTGGGTGGGTTGGCGT+TGG - chr5_3:10290663-10290682 None:intergenic 60.0%
! CTGGCCTTCTGGGTACAGCT+TGG + chr5_3:10291366-10291385 Msa0797920:intron 60.0%
GGCCATGGAGTGCGTTTCGA+TGG - chr5_3:10291745-10291764 None:intergenic 60.0%
TCAGGAGGAGAGTCTGGCCA+TGG - chr5_3:10291760-10291779 None:intergenic 60.0%
GGGAGTTCAGGAGGAGAGTC+TGG - chr5_3:10291766-10291785 None:intergenic 60.0%
CGGAACAGTGATTCCGGCGC+CGG - chr5_3:10288547-10288566 None:intergenic 65.0%
! CGGCGCCGGAATCACTGTTC+CGG + chr5_3:10288545-10288564 Msa0797920:CDS 65.0%
ACGGGATCCGGATTCGGCCA+TGG + chr5_3:10288637-10288656 Msa0797920:CDS 65.0%
GATGCGGCCATGGCCGAATC+CGG - chr5_3:10288647-10288666 None:intergenic 65.0%
GATTCGGCCATGGCCGCATC+CGG + chr5_3:10288647-10288666 Msa0797920:CDS 65.0%
ACAGGATCCGGATGCGGCCA+TGG - chr5_3:10288657-10288676 None:intergenic 65.0%
! GCAGGACCTTGCACCGGCAT+TGG - chr5_3:10290164-10290183 None:intergenic 65.0%
GTGGAGGGACTCACCGAGCA+GGG - chr5_3:10290520-10290539 None:intergenic 65.0%
!! AGAATGGGGGAAGGGGTGCC+AGG + chr5_3:10291441-10291460 Msa0797920:intron 65.0%
!! GAATGGGGGAAGGGGTGCCA+GGG + chr5_3:10291442-10291461 Msa0797920:intron 65.0%
CGCCGGCGCCGTTAAGTCAC+CGG + chr5_3:10288380-10288399 Msa0797920:CDS 70.0%
CGCCGGTGACTTAACGGCGC+CGG - chr5_3:10288385-10288404 None:intergenic 70.0%
!! AGTGATTCCGGCGCCGGTGC+CGG - chr5_3:10288541-10288560 None:intergenic 70.0%
GGTGGAGGGACTCACCGAGC+AGG - chr5_3:10290521-10290540 None:intergenic 70.0%
! GCGCCGGTGCCGGAGGTGAA+TGG - chr5_3:10288531-10288550 None:intergenic 75.0%
!! TTCACCTCCGGCACCGGCGC+CGG + chr5_3:10288531-10288550 Msa0797920:CDS 75.0%
!!! GATTCCGGCGCCGGTGCCGG+AGG - chr5_3:10288538-10288557 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10288102 10292321 10288102 ID=Msa0797920;Name=Msa0797920
chr5_3 mRNA 10288102 10292321 10288102 ID=Msa0797920-mRNA-1;Parent=Msa0797920;Name=Msa0797920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=201|1|1|1|1|1|3|367|504
chr5_3 exon 10288102 10289012 10288102 ID=Msa0797920-mRNA-1:exon:4346;Parent=Msa0797920-mRNA-1
chr5_3 exon 10289968 10290525 10289968 ID=Msa0797920-mRNA-1:exon:4347;Parent=Msa0797920-mRNA-1
chr5_3 exon 10291708 10292321 10291708 ID=Msa0797920-mRNA-1:exon:4348;Parent=Msa0797920-mRNA-1
chr5_3 five_prime_UTR 10288102 10288302 10288102 ID=Msa0797920-mRNA-1:five_prime_utr;Parent=Msa0797920-mRNA-1
chr5_3 CDS 10288303 10289012 10288303 ID=Msa0797920-mRNA-1:cds;Parent=Msa0797920-mRNA-1
chr5_3 CDS 10289968 10290525 10289968 ID=Msa0797920-mRNA-1:cds;Parent=Msa0797920-mRNA-1
chr5_3 CDS 10291708 10291954 10291708 ID=Msa0797920-mRNA-1:cds;Parent=Msa0797920-mRNA-1
chr5_3 three_prime_UTR 10291955 10292321 10291955 ID=Msa0797920-mRNA-1:three_prime_utr;Parent=Msa0797920-mRNA-1
Gene Sequence

>Msa0797920

ATGAAGCTCTCAACATTACAACAAAGTTACATCAACCGTAGAACAAACAGCTTCAGAGGCTTAGATTCAGATAACAGCGCCGGCGCCGTTAAGTCACCGGCGACAATTTTCTGGCTAGTACTTCACGGTGTTTGCTGCTTAATCAGCCTCGTTCTCGGCTTCCGATTTTCTCGTCTCGTTTTCTTCTTCCTCTTTTCAACTTCCTCCACCAATATTTACACCGTTCCATTCACCTCCGGCACCGGCGCCGGAATCACTGTTCCGGTAGAAACTCAACAGAACGTTCTAACAAACGGGAGTTCAGTAGTGGCGAGTAGAGTGGTTGTTGGGAGACACGGGATCCGGATTCGGCCATGGCCGCATCCGGATCCTGTAGAAGTAATGAAAGCGCATGGAATAATCTCTAGAGTTCAAAATGAACAGAGATTGTTGTTTGGAGTGAAGAACCCTAGAAAAGTGATTGTTGTGACACCAACGTATGTGAGGACTTTTCAAGCGATGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTACCGTATGATCTGACTTGGATTGTGGTTGAAGCTGGTGGTGTTACTAATGAGACTGCTTCAATTATTGGAAAATCTGGATTAAGGATTATTCATGTTGGGTTTAATCAGAAAATGCCCAGTTTGTGGGAGGATAGACATAAAGTTGAATCTTTGATGCGTCTTCATGCTTTAAGGATTGTGAGAAAAGAGAAGCTGGATGGAATTGTGATGTTTGCTGATGATAGTAATATGCATAATATGGAGCTGTTTGATGAAATTCAGAGTGTGAAATGGATCGGTGCTGTTTCGGTTGGAATACTCCTTCATTCTGTTGATGCAGCTGAAATTTCTTCATTGGTTCAAAAAGAAGGAGATGAGGAAACCATGCCAATGCCGGTGCAAGGTCCTGCTTGTAATGGTACTGATAAGTTGGTCGGGTGGCACACCTTCAATTCATTACGATATACGGGAAGGCGTGCAGTTTACATTGATGACCGGGCACCAGTGTTGCCGACAAAATTTGAATGGTCTGGGTTTGTGTTGAATTCCAGATTACTTTGGAAGGATGTTGACGATAAGCCAGAGTGGATTAAGGATCTTGATGCAGTGGATGGGGATGGTGAGAAGATAGAGAGTCCACTGTCTTTGCTCAAGAGTACCTCTGTGGTAGAACCACTAGGGAGTTGTGGACGCCATGTTTTGCTTTGGTGGTTGCGGGTTGAAGCTCGCACAGACAGCAAATTCCCTGCTCGATGGGTGATTGACCCTCCTTTGGACATCACAGTCCCATCGAAACGCACTCCATGGCCAGACTCTCCTCCTGAACTCCCATCTAATGAAAATGAAAAAGTGTTCGCTGCAGGCACAGAAGAGCATTCGAACACGCACACTACAAAGACTAAAACACCCAGATCCAGACGCAGTAGAAGTAAGAGAAAGCATGACACCAAAGTGATTGGTGTACAGGTCTCTACACATTCTGAACAAACCGAGATATGA
Protein sequence

>Msa0797920

MKLSTLQQSYINRRTNSFRGLDSDNSAGAVKSPATIFWLVLHGVCCLISLVLGFRFSRLVFFFLFSTSSTNIYTVPFTSGTGAGITVPVETQQNVLTNGSSVVASRVVVGRHGIRIRPWPHPDPVEVMKAHGIISRVQNEQRLLFGVKNPRKVIVVTPTYVRTFQAMHLTGVMHSLMLVPYDLTWIVVEAGGVTNETASIIGKSGLRIIHVGFNQKMPSLWEDRHKVESLMRLHALRIVRKEKLDGIVMFADDSNMHNMELFDEIQSVKWIGAVSVGILLHSVDAAEISSLVQKEGDEETMPMPVQGPACNGTDKLVGWHTFNSLRYTGRRAVYIDDRAPVLPTKFEWSGFVLNSRLLWKDVDDKPEWIKDLDAVDGDGEKIESPLSLLKSTSVVEPLGSCGRHVLLWWLRVEARTDSKFPARWVIDPPLDITVPSKRTPWPDSPPELPSNENEKVFAAGTEEHSNTHTTKTKTPRSRRSRSKRKHDTKVIGVQVSTHSEQTEI*