Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714680 | XP_003611694.2 | 94.235 | 850 | 48 | 1 | 1 | 850 | 1 | 849 | 0.0 | 1637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714680 | sp|Q9SLN1|FPP7_ARATH | 33.234 | 671 | 324 | 20 | 219 | 845 | 302 | 892 | 1.92e-79 | 278 |
| Msa0714680 | sp|Q9SLN1|FPP7_ARATH | 43.556 | 225 | 108 | 3 | 1 | 225 | 1 | 206 | 8.23e-43 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714680 | G7K5B5 | 94.235 | 850 | 48 | 1 | 1 | 850 | 1 | 849 | 0.0 | 1637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714680 | Msa0836130 | 0.848883 | 4.614253e-60 | -8.615850e-47 |
| Msa0714680 | Msa1429830 | 0.803393 | 3.562197e-49 | -8.615850e-47 |
| Msa0344070 | Msa0714680 | 0.804793 | 1.821537e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714680 | MtrunA17_Chr5g0401911 | 94.235 | 850 | 48 | 1 | 1 | 850 | 1 | 849 | 0.0 | 1637 |
| Msa0714680 | MtrunA17_Chr4g0053121 | 48.690 | 725 | 245 | 16 | 231 | 836 | 340 | 1056 | 0.0 | 563 |
| Msa0714680 | MtrunA17_Chr4g0053121 | 61.224 | 245 | 82 | 3 | 1 | 244 | 1 | 233 | 8.68e-79 | 276 |
| Msa0714680 | MtrunA17_Chr4g0044561 | 29.258 | 728 | 371 | 20 | 219 | 843 | 309 | 995 | 9.44e-61 | 223 |
| Msa0714680 | MtrunA17_Chr4g0044561 | 33.333 | 240 | 127 | 6 | 1 | 237 | 1 | 210 | 6.42e-19 | 92.4 |
| Msa0714680 | MtrunA17_Chr3g0142411 | 39.109 | 202 | 123 | 0 | 31 | 232 | 78 | 279 | 7.85e-34 | 140 |
| Msa0714680 | MtrunA17_Chr8g0384881 | 32.216 | 388 | 183 | 10 | 1 | 339 | 1 | 357 | 2.69e-32 | 134 |
| Msa0714680 | MtrunA17_Chr1g0156371 | 33.716 | 261 | 143 | 4 | 1 | 232 | 1 | 260 | 7.94e-30 | 127 |
| Msa0714680 | MtrunA17_Chr1g0159951 | 33.230 | 322 | 152 | 8 | 50 | 339 | 147 | 437 | 2.94e-28 | 122 |
| Msa0714680 | MtrunA17_Chr5g0405291 | 36.842 | 190 | 120 | 0 | 43 | 232 | 71 | 260 | 1.30e-26 | 116 |
| Msa0714680 | MtrunA17_Chr3g0130811 | 29.640 | 361 | 183 | 9 | 38 | 354 | 47 | 380 | 8.46e-23 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714680 | AT2G23360.1 | 33.234 | 671 | 324 | 20 | 219 | 845 | 302 | 892 | 1.95e-80 | 278 |
| Msa0714680 | AT2G23360.1 | 43.556 | 225 | 108 | 3 | 1 | 225 | 1 | 206 | 8.37e-44 | 171 |
| Msa0714680 | AT1G19835.6 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 9.95e-34 | 140 |
| Msa0714680 | AT1G19835.5 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 9.95e-34 | 140 |
| Msa0714680 | AT1G19835.3 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 9.95e-34 | 140 |
| Msa0714680 | AT1G19835.1 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 9.95e-34 | 140 |
| Msa0714680 | AT1G19835.4 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 9.95e-34 | 140 |
| Msa0714680 | AT1G19835.2 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 9.95e-34 | 140 |
| Msa0714680 | AT4G36120.2 | 32.308 | 260 | 148 | 4 | 1 | 232 | 1 | 260 | 2.19e-28 | 123 |
| Msa0714680 | AT4G36120.1 | 32.308 | 260 | 148 | 4 | 1 | 232 | 1 | 260 | 2.19e-28 | 123 |
| Msa0714680 | AT1G77580.4 | 33.770 | 305 | 154 | 9 | 39 | 339 | 20 | 280 | 5.37e-27 | 118 |
| Msa0714680 | AT1G77580.2 | 33.770 | 305 | 154 | 9 | 39 | 339 | 54 | 314 | 5.50e-27 | 118 |
| Msa0714680 | AT1G77580.3 | 33.770 | 305 | 154 | 9 | 39 | 339 | 54 | 314 | 5.50e-27 | 118 |
| Msa0714680 | AT1G77580.1 | 32.372 | 312 | 149 | 5 | 39 | 339 | 20 | 280 | 1.32e-26 | 116 |
| Msa0714680 | AT1G47900.2 | 33.333 | 192 | 128 | 0 | 41 | 232 | 109 | 300 | 5.02e-26 | 115 |
| Msa0714680 | AT1G47900.2 | 27.353 | 563 | 327 | 24 | 219 | 727 | 415 | 949 | 9.18e-14 | 76.3 |
| Msa0714680 | AT1G47900.3 | 33.333 | 192 | 128 | 0 | 41 | 232 | 109 | 300 | 5.11e-26 | 115 |
| Msa0714680 | AT1G47900.3 | 27.709 | 563 | 327 | 24 | 219 | 727 | 415 | 951 | 6.20e-15 | 80.1 |
| Msa0714680 | AT1G47900.1 | 33.333 | 192 | 128 | 0 | 41 | 232 | 109 | 300 | 5.11e-26 | 115 |
| Msa0714680 | AT1G47900.1 | 27.709 | 563 | 327 | 24 | 219 | 727 | 415 | 951 | 6.20e-15 | 80.1 |
| Msa0714680 | AT1G21810.3 | 28.254 | 315 | 174 | 8 | 62 | 372 | 14 | 280 | 1.22e-21 | 100 |
| Msa0714680 | AT1G21810.1 | 28.254 | 315 | 174 | 8 | 62 | 372 | 14 | 280 | 1.22e-21 | 100 |
| Msa0714680 | AT3G05270.3 | 29.745 | 353 | 199 | 10 | 1 | 339 | 1 | 318 | 9.73e-21 | 97.8 |
| Msa0714680 | AT3G05270.2 | 29.745 | 353 | 199 | 10 | 1 | 339 | 1 | 318 | 9.73e-21 | 97.8 |
| Msa0714680 | AT3G05270.1 | 29.745 | 353 | 199 | 10 | 1 | 339 | 1 | 318 | 9.73e-21 | 97.8 |
| Msa0714680 | AT3G19370.3 | 43.077 | 130 | 65 | 3 | 603 | 730 | 497 | 619 | 2.37e-20 | 97.1 |
| Msa0714680 | AT3G19370.1 | 43.077 | 130 | 65 | 3 | 603 | 730 | 497 | 619 | 2.37e-20 | 97.1 |
| Msa0714680 | AT3G19370.2 | 43.077 | 130 | 65 | 3 | 603 | 730 | 497 | 619 | 2.37e-20 | 97.1 |
Find 124 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTCCTGGTTGGTTTC+AGG | 0.209069 | 5_1:+7430008 | Msa0714680:CDS |
| AAAGCATTACTCTTGAAAAT+TGG | 0.233169 | 5_1:-7429519 | None:intergenic |
| TGTACTTATGGATATTAAAT+TGG | 0.243388 | 5_1:+7430086 | Msa0714680:CDS |
| AACAGATACGAGTCGATTTC+AGG | 0.243458 | 5_1:+7430590 | Msa0714680:CDS |
| CGATGTTAATGTCAATTCTT+TGG | 0.254157 | 5_1:+7431442 | Msa0714680:CDS |
| ATGTTTCAATGACATATTAA+AGG | 0.254252 | 5_1:+7429984 | Msa0714680:CDS |
| AGTGAAAATGAAGCTAAAAT+TGG | 0.273638 | 5_1:+7430540 | Msa0714680:CDS |
| GACAATGATCCCAAATGTTT+TGG | 0.275589 | 5_1:-7429742 | None:intergenic |
| TAACCCTGATGATGTACTTA+TGG | 0.281079 | 5_1:+7430074 | Msa0714680:CDS |
| ACCTTCAGATATAAACCTTA+TGG | 0.282326 | 5_1:+7429780 | Msa0714680:CDS |
| TCTCTCCACTCTGGTGTATA+CGG | 0.284690 | 5_1:+7431674 | Msa0714680:three_prime_UTR |
| AACAGCTGCTTCGGAGAAAT+TGG | 0.292771 | 5_1:+7431124 | Msa0714680:CDS |
| TTTAGCATTAGAAGTGGAAT+TGG | 0.295970 | 5_1:+7430770 | Msa0714680:CDS |
| GTTTAAAAGTCCAAAACATT+TGG | 0.296321 | 5_1:+7429732 | Msa0714680:CDS |
| TCATTGTCATGCCAAAGTTT+TGG | 0.300151 | 5_1:+7429757 | Msa0714680:CDS |
| TATGGATGATTTCATTGAAA+TGG | 0.312296 | 5_1:+7429798 | Msa0714680:CDS |
| CGAAGAAAGAGTCGCGCATT+TGG | 0.328670 | 5_1:+7429138 | Msa0714680:CDS |
| TGCATTGCAAGAGTTATCTT+TGG | 0.328860 | 5_1:+7429627 | Msa0714680:CDS |
| CCTTCAACTTCATTCTTAGA+AGG | 0.334402 | 5_1:+7428089 | Msa0714680:five_prime_UTR |
| GCTTTGGGATGTTTCAAGTA+TGG | 0.350475 | 5_1:+7430476 | Msa0714680:CDS |
| TTTAAAAGTCCAAAACATTT+GGG | 0.353219 | 5_1:+7429733 | Msa0714680:CDS |
| CGATATGTGTTACAGTATAC+TGG | 0.359514 | 5_1:+7430377 | Msa0714680:CDS |
| GGAATTCGCTGCATCGAATT+CGG | 0.362627 | 5_1:+7429957 | Msa0714680:CDS |
| CAGCAAGCATCTGATCCAAT+AGG | 0.362904 | 5_1:-7431319 | None:intergenic |
| CTTAGAAGGTCATGAAAGTA+TGG | 0.365796 | 5_1:+7428103 | Msa0714680:five_prime_UTR |
| TTTCTTCGTAAATTAGTTCC+TGG | 0.368040 | 5_1:-7429123 | None:intergenic |
| AGCTATCAGAGAAAAGTAAA+AGG | 0.370845 | 5_1:+7429287 | Msa0714680:CDS |
| TGCATTGATCTGGATTATTC+AGG | 0.371659 | 5_1:-7430119 | None:intergenic |
| TGCAATGCAATATTACTTCT+CGG | 0.374548 | 5_1:-7429613 | None:intergenic |
| AGCTTGTGGAAAAGGATGTT+AGG | 0.384604 | 5_1:+7431497 | Msa0714680:CDS |
| ATATTAAAGGGTAATATTCC+TGG | 0.390428 | 5_1:+7429997 | Msa0714680:CDS |
| TCAACTGCTTCTCAAGGTTA+AGG | 0.391161 | 5_1:-7431166 | None:intergenic |
| AGTTGAAGGTTCATAAGTTT+AGG | 0.392039 | 5_1:-7428075 | None:intergenic |
| GAATCTAATGTGCATTGATC+TGG | 0.392218 | 5_1:-7430129 | None:intergenic |
| TCGGCTGCTCCGATGCTACT+TGG | 0.394233 | 5_1:-7429594 | None:intergenic |
| AACATTGCTGTAATTTGTAA+TGG | 0.396358 | 5_1:+7431623 | Msa0714680:three_prime_UTR |
| TCACCGACGCTCTGAGTTCA+AGG | 0.405881 | 5_1:-7427958 | None:intergenic |
| TGTTTCAATGACATATTAAA+GGG | 0.406955 | 5_1:+7429985 | Msa0714680:CDS |
| TTTCAATGAAATCATCCATA+AGG | 0.409508 | 5_1:-7429795 | None:intergenic |
| TTCTGCATTGATTTCAGAAT+CGG | 0.409535 | 5_1:+7429705 | Msa0714680:CDS |
| GAATTGTCGTTATCGTCAAC+AGG | 0.413979 | 5_1:-7430285 | None:intergenic |
| AGAGATATGAATAAATCAAT+AGG | 0.415065 | 5_1:+7430228 | Msa0714680:CDS |
| GTGATCGATAATCCATTTCA+TGG | 0.417721 | 5_1:-7430445 | None:intergenic |
| TTGATCTTCAAGTCTTCTGT+TGG | 0.420207 | 5_1:-7430667 | None:intergenic |
| AACTAACTACAGCCATGAAA+TGG | 0.421739 | 5_1:+7430433 | Msa0714680:CDS |
| GACGACTAAGCTTGTGGAAA+AGG | 0.426167 | 5_1:+7431489 | Msa0714680:CDS |
| GATCGTAATGCATTGATGAT+TGG | 0.427232 | 5_1:+7429412 | Msa0714680:CDS |
| CTAGTTGTGTTTGTAACTAT+AGG | 0.427992 | 5_1:-7431251 | None:intergenic |
| ATATCCATAAGTACATCATC+AGG | 0.434452 | 5_1:-7430078 | None:intergenic |
| TGTCTAATTCTTCACAAAAG+TGG | 0.435433 | 5_1:-7430803 | None:intergenic |
| GAAGCAAATAATGAAACAAT+TGG | 0.438921 | 5_1:+7429877 | Msa0714680:CDS |
| GATCAATGCACATTAGATTC+AGG | 0.440457 | 5_1:+7430132 | Msa0714680:CDS |
| CCTTCTAAGAATGAAGTTGA+AGG | 0.451071 | 5_1:-7428089 | None:intergenic |
| TATCTGAAGGTCCAAAACTT+TGG | 0.451418 | 5_1:-7429768 | None:intergenic |
| TTTATCTTCTCAGCACGAAA+AGG | 0.451638 | 5_1:+7430956 | Msa0714680:intron |
| GGATGTAGTTGAAGTCGTAT+TGG | 0.452694 | 5_1:+7430029 | Msa0714680:CDS |
| GTGGAAAACATCCGATTTGA+GGG | 0.454638 | 5_1:+7430335 | Msa0714680:CDS |
| TAATACTTCTCTGATTTATG+AGG | 0.457134 | 5_1:+7429456 | Msa0714680:CDS |
| AACTTCAGCTTCAGCTTGAA+AGG | 0.457589 | 5_1:+7430838 | Msa0714680:CDS |
| TAACCTTGAGAAGCAGTTGA+AGG | 0.457699 | 5_1:+7431169 | Msa0714680:CDS |
| GATTTATGATGCTGTAATGA+AGG | 0.465323 | 5_1:+7429222 | Msa0714680:CDS |
| ATGGGAGATAACAGCTGCTT+CGG | 0.465824 | 5_1:+7431115 | Msa0714680:CDS |
| AAAATGATTGAGCTTATTGA+AGG | 0.474560 | 5_1:+7430252 | Msa0714680:CDS |
| ATAAGTTTAGGTGCAAGAAA+TGG | 0.474992 | 5_1:-7428063 | None:intergenic |
| TTATCTTCTCAGCACGAAAA+GGG | 0.476370 | 5_1:+7430957 | Msa0714680:intron |
| AGCTGAAATGTTGTCAATGA+AGG | 0.478178 | 5_1:+7429078 | Msa0714680:CDS |
| ACGAAAAGGGCACGCTCAAA+TGG | 0.478503 | 5_1:+7430970 | Msa0714680:CDS |
| AGCAAGCATCTGATCCAATA+GGG | 0.480960 | 5_1:-7431318 | None:intergenic |
| AGTGGAAAACATCCGATTTG+AGG | 0.484506 | 5_1:+7430334 | Msa0714680:CDS |
| GGATCAAAAGCAGTGGGAGT+GGG | 0.489362 | 5_1:+7428351 | Msa0714680:CDS |
| TGGATCAAAAGCAGTGGGAG+TGG | 0.491574 | 5_1:+7428350 | Msa0714680:CDS |
| CTGTAAGACATCCCTCAAAT+CGG | 0.491698 | 5_1:-7430346 | None:intergenic |
| AACAGAAACTGAATTAAAAG+AGG | 0.503300 | 5_1:+7430734 | Msa0714680:CDS |
| ATTGTTCAAGAAGCAGTGTC+AGG | 0.505727 | 5_1:+7428735 | Msa0714680:CDS |
| AGTGTCAAGATATCTACTTA+AGG | 0.511028 | 5_1:-7430706 | None:intergenic |
| GATCAAAAGCAGTGGGAGTG+GGG | 0.513006 | 5_1:+7428352 | Msa0714680:CDS |
| GTCTGATTCTGATCATATCT+CGG | 0.515525 | 5_1:+7429936 | Msa0714680:CDS |
| CTGCTTCTCAAGGTTAAGGA+TGG | 0.523429 | 5_1:-7431162 | None:intergenic |
| TTGCAACTCCGATCTTAAGT+TGG | 0.524829 | 5_1:-7430631 | None:intergenic |
| TGTTCCCTTAAAAGACATGA+AGG | 0.529746 | 5_1:+7431280 | Msa0714680:CDS |
| TCTCTTTATCAATGAAGTCT+CGG | 0.537360 | 5_1:-7430187 | None:intergenic |
| GCTTGTGGAAAAGGATGTTA+GGG | 0.537823 | 5_1:+7431498 | Msa0714680:CDS |
| TCCATAAGGTTTATATCTGA+AGG | 0.537970 | 5_1:-7429781 | None:intergenic |
| TGAGGCTCGAGTGCTTCAAA+AGG | 0.540451 | 5_1:+7429474 | Msa0714680:CDS |
| CATGGCTGTAGTTAGTTCTG+TGG | 0.541228 | 5_1:-7430427 | None:intergenic |
| TTGCCTTCAACTGCTTCTCA+AGG | 0.543029 | 5_1:-7431172 | None:intergenic |
| GTGATGACAATGTTAGCTGC+GGG | 0.546271 | 5_1:+7429671 | Msa0714680:CDS |
| TGTTAGCTGCGGGGAATCCT+CGG | 0.552410 | 5_1:+7429681 | Msa0714680:CDS |
| CTGAAAAGCACGGATCATGA+AGG | 0.555921 | 5_1:-7430313 | None:intergenic |
| TTAGAGAGGAACAAGAGCAA+AGG | 0.564423 | 5_1:+7429200 | Msa0714680:CDS |
| TAGTTGAATACTTTCTGAGA+GGG | 0.565156 | 5_1:+7431584 | Msa0714680:three_prime_UTR |
| ATTTGTAATGGAGAAAAGTG+AGG | 0.573476 | 5_1:+7431635 | Msa0714680:three_prime_UTR |
| TACTATTGCCAACTTAAGAT+CGG | 0.573752 | 5_1:+7430623 | Msa0714680:CDS |
| TTGGGATGTTTCAAGTATGG+AGG | 0.576602 | 5_1:+7430479 | Msa0714680:CDS |
| TTGGCATCAATGTCTTACAT+TGG | 0.578470 | 5_1:+7429646 | Msa0714680:CDS |
| GTCAATGAAGGAACATCTTG+AGG | 0.581565 | 5_1:+7429090 | Msa0714680:CDS |
| TAAAGGGTAATATTCCTGGT+TGG | 0.583360 | 5_1:+7430001 | Msa0714680:CDS |
| TCCTAATGGATCAAAAGCAG+TGG | 0.590014 | 5_1:+7428344 | Msa0714680:exon |
| TGAAATGGAAAAGTTAGCAG+TGG | 0.590166 | 5_1:+7429813 | Msa0714680:CDS |
| AATATGGACGACTAAGCTTG+TGG | 0.590327 | 5_1:+7431483 | Msa0714680:CDS |
| CCTAATGGATCAAAAGCAGT+GGG | 0.599875 | 5_1:+7428345 | Msa0714680:exon |
| TGAAAAGCACGGATCATGAA+GGG | 0.602673 | 5_1:-7430312 | None:intergenic |
| TACTTCAAATGAAAATGAAG+AGG | 0.605732 | 5_1:+7428423 | Msa0714680:CDS |
| TTTCCTTGAACTCAGAGCGT+CGG | 0.612395 | 5_1:+7427955 | Msa0714680:five_prime_UTR |
| ATCAAAAGCAGTGGGAGTGG+GGG | 0.619363 | 5_1:+7428353 | Msa0714680:CDS |
| GATGAACTTACATTTCGCAC+CGG | 0.623235 | 5_1:-7431015 | None:intergenic |
| AGCATCTGATCCAATAGGGA+CGG | 0.624671 | 5_1:-7431314 | None:intergenic |
| AAATGATTGAGCTTATTGAA+GGG | 0.624850 | 5_1:+7430253 | Msa0714680:CDS |
| ACAATTGAATCAAGCAGACG+TGG | 0.630883 | 5_1:+7429390 | Msa0714680:CDS |
| GTAGTTGAATACTTTCTGAG+AGG | 0.635294 | 5_1:+7431583 | Msa0714680:three_prime_UTR |
| TGAAATCAATGCAGAAGCCG+AGG | 0.638690 | 5_1:-7429698 | None:intergenic |
| ACTACATCCTGAAACCAACC+AGG | 0.644112 | 5_1:-7430015 | None:intergenic |
| TTTGTAATGGAGAAAAGTGA+GGG | 0.644593 | 5_1:+7431636 | Msa0714680:three_prime_UTR |
| TCTTGAGGAATCTATACACC+AGG | 0.648117 | 5_1:+7429105 | Msa0714680:CDS |
| ATGTGTTACAGTATACTGGA+TGG | 0.649581 | 5_1:+7430381 | Msa0714680:CDS |
| TTACAGTATACTGGATGGCA+AGG | 0.656212 | 5_1:+7430386 | Msa0714680:CDS |
| TATCCATAAGTACATCATCA+GGG | 0.668515 | 5_1:-7430077 | None:intergenic |
| ATATGATCAGAATCAGACAA+TGG | 0.671120 | 5_1:-7429931 | None:intergenic |
| CATTGATTTCAGAATCGGAG+CGG | 0.673449 | 5_1:+7429710 | Msa0714680:CDS |
| TTCAGCCGTATACACCAGAG+TGG | 0.676114 | 5_1:-7431679 | None:intergenic |
| GTGCTCTCAAAGAATGTATG+CGG | 0.683466 | 5_1:+7429164 | Msa0714680:CDS |
| AGTGATGACAATGTTAGCTG+CGG | 0.696806 | 5_1:+7429670 | Msa0714680:CDS |
| AGAAGCATGAGAAATTTCAG+TGG | 0.704549 | 5_1:-7429851 | None:intergenic |
| TGATGACAATGTTAGCTGCG+GGG | 0.725043 | 5_1:+7429672 | Msa0714680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTTATTTATATAT+TGG | + | chr5_1:7428492-7428511 | Msa0714680:intron | 0.0% |
| !! | TACATGATTTAATTATTATA+TGG | + | chr5_1:7428193-7428212 | Msa0714680:intron | 10.0% |
| !! | ATAACTAATATATATATTGA+AGG | - | chr5_1:7430881-7430900 | None:intergenic | 10.0% |
| !!! | TGGAATAAATTATTTTGTTA+AGG | + | chr5_1:7428123-7428142 | Msa0714680:five_prime_UTR | 15.0% |
| !! | AAAATAATAGATGTTAGAAA+AGG | - | chr5_1:7428462-7428481 | None:intergenic | 15.0% |
| !!! | TTGTTTTATTTTTCTGTTTT+AGG | + | chr5_1:7428590-7428609 | Msa0714680:intron | 15.0% |
| !!! | TTTTTTAAGAGCAGTTATAT+TGG | + | chr5_1:7429014-7429033 | Msa0714680:intron | 20.0% |
| !! | CTTATAAAAGTTTCATTTGA+AGG | + | chr5_1:7429040-7429059 | Msa0714680:intron | 20.0% |
| !! | TTTAAAAGTCCAAAACATTT+GGG | + | chr5_1:7429733-7429752 | Msa0714680:CDS | 20.0% |
| !! | ATGTTTCAATGACATATTAA+AGG | + | chr5_1:7429984-7430003 | Msa0714680:CDS | 20.0% |
| !! | TGTTTCAATGACATATTAAA+GGG | + | chr5_1:7429985-7430004 | Msa0714680:CDS | 20.0% |
| !! | TGTACTTATGGATATTAAAT+TGG | + | chr5_1:7430086-7430105 | Msa0714680:CDS | 20.0% |
| !! | AGAGATATGAATAAATCAAT+AGG | + | chr5_1:7430228-7430247 | Msa0714680:CDS | 20.0% |
| !! | CATCAAAAAGAAATTTGATT+GGG | + | chr5_1:7430506-7430525 | Msa0714680:CDS | 20.0% |
| ! | ACAATGTAACTATAATCACA+AGG | - | chr5_1:7428159-7428178 | None:intergenic | 25.0% |
| !! | TTGAAGACTAATTTTCCTAA+TGG | + | chr5_1:7428330-7428349 | Msa0714680:exon | 25.0% |
| ! | TACTTCAAATGAAAATGAAG+AGG | + | chr5_1:7428423-7428442 | Msa0714680:CDS | 25.0% |
| ! | TATAGAAGTGGTTATGATAA+GGG | + | chr5_1:7428890-7428909 | Msa0714680:intron | 25.0% |
| ! | TAAAAGTTTCATTTGAAGGA+TGG | + | chr5_1:7429044-7429063 | Msa0714680:intron | 25.0% |
| ! | AAAAGTTTCATTTGAAGGAT+GGG | + | chr5_1:7429045-7429064 | Msa0714680:intron | 25.0% |
| ! | TAATACTTCTCTGATTTATG+AGG | + | chr5_1:7429456-7429475 | Msa0714680:CDS | 25.0% |
| !! | AAAGCATTACTCTTGAAAAT+TGG | - | chr5_1:7429522-7429541 | None:intergenic | 25.0% |
| ! | GTTTAAAAGTCCAAAACATT+TGG | + | chr5_1:7429732-7429751 | Msa0714680:CDS | 25.0% |
| ! | TTTCAATGAAATCATCCATA+AGG | - | chr5_1:7429798-7429817 | None:intergenic | 25.0% |
| ! | TATGGATGATTTCATTGAAA+TGG | + | chr5_1:7429798-7429817 | Msa0714680:CDS | 25.0% |
| ! | GAAGCAAATAATGAAACAAT+TGG | + | chr5_1:7429877-7429896 | Msa0714680:CDS | 25.0% |
| ! | ATATTAAAGGGTAATATTCC+TGG | + | chr5_1:7429997-7430016 | Msa0714680:CDS | 25.0% |
| ! | AAAATGATTGAGCTTATTGA+AGG | + | chr5_1:7430252-7430271 | Msa0714680:CDS | 25.0% |
| ! | AAATGATTGAGCTTATTGAA+GGG | + | chr5_1:7430253-7430272 | Msa0714680:CDS | 25.0% |
| !! | CCAATCAAATTTCTTTTTGA+TGG | - | chr5_1:7430508-7430527 | None:intergenic | 25.0% |
| ! | CCATCAAAAAGAAATTTGAT+TGG | + | chr5_1:7430505-7430524 | Msa0714680:CDS | 25.0% |
| ! | AGTGAAAATGAAGCTAAAAT+TGG | + | chr5_1:7430540-7430559 | Msa0714680:CDS | 25.0% |
| ! | AACAGAAACTGAATTAAAAG+AGG | + | chr5_1:7430734-7430753 | Msa0714680:CDS | 25.0% |
| !! | GCAATACTGTAATATGATTT+TGG | + | chr5_1:7430905-7430924 | Msa0714680:intron | 25.0% |
| !!! | AAAACTACAATCTTTTCAAG+TGG | - | chr5_1:7431398-7431417 | None:intergenic | 25.0% |
| !!! | GAAAAGATTGTAGTTTTGAA+AGG | + | chr5_1:7431401-7431420 | Msa0714680:CDS | 25.0% |
| !!! | GTAGTTTTGAAAGGATTAAA+AGG | + | chr5_1:7431410-7431429 | Msa0714680:CDS | 25.0% |
| !!! | ATATTTTTTGGCAGGTAAAA+TGG | - | chr5_1:7431468-7431487 | None:intergenic | 25.0% |
| !! | ATTTTACCTGCCAAAAAATA+TGG | + | chr5_1:7431467-7431486 | Msa0714680:CDS | 25.0% |
| !! | AACATTGCTGTAATTTGTAA+TGG | + | chr5_1:7431623-7431642 | Msa0714680:three_prime_UTR | 25.0% |
| !! | CTTTGAAGTTGAGAAAAAGA+GGG | - | chr5_1:7428033-7428052 | None:intergenic | 30.0% |
| !! | ACTTTGAAGTTGAGAAAAAG+AGG | - | chr5_1:7428034-7428053 | None:intergenic | 30.0% |
| ATAAGTTTAGGTGCAAGAAA+TGG | - | chr5_1:7428066-7428085 | None:intergenic | 30.0% | |
| AGTTGAAGGTTCATAAGTTT+AGG | - | chr5_1:7428078-7428097 | None:intergenic | 30.0% | |
| GTAGTCATGATCAAACTATT+TGG | + | chr5_1:7428236-7428255 | Msa0714680:intron | 30.0% | |
| TCAAATGAAAATGAAGAGGT+AGG | + | chr5_1:7428427-7428446 | Msa0714680:intron | 30.0% | |
| !! | GATTCTAAAATGCAACTAGT+TGG | + | chr5_1:7428554-7428573 | Msa0714680:intron | 30.0% |
| !! | TATTTTTCTGTTTTAGGTGC+AGG | + | chr5_1:7428596-7428615 | Msa0714680:intron | 30.0% |
| TCTGGCTGATAAAGAAAAAT+TGG | + | chr5_1:7428623-7428642 | Msa0714680:CDS | 30.0% | |
| ATAACCACTTCTATAGTCAT+AGG | - | chr5_1:7428885-7428904 | None:intergenic | 30.0% | |
| CTATAGAAGTGGTTATGATA+AGG | + | chr5_1:7428889-7428908 | Msa0714680:intron | 30.0% | |
| ATAGAAGTGGTTATGATAAG+GGG | + | chr5_1:7428891-7428910 | Msa0714680:intron | 30.0% | |
| TCTCAATCAATCATAACAGT+CGG | - | chr5_1:7428932-7428951 | None:intergenic | 30.0% | |
| ACTCTTTACACTTACAGTTA+CGG | + | chr5_1:7428960-7428979 | Msa0714680:intron | 30.0% | |
| TTTCTTCGTAAATTAGTTCC+TGG | - | chr5_1:7429126-7429145 | None:intergenic | 30.0% | |
| GATTTATGATGCTGTAATGA+AGG | + | chr5_1:7429222-7429241 | Msa0714680:CDS | 30.0% | |
| AGCTATCAGAGAAAAGTAAA+AGG | + | chr5_1:7429287-7429306 | Msa0714680:CDS | 30.0% | |
| TGCAATGCAATATTACTTCT+CGG | - | chr5_1:7429616-7429635 | None:intergenic | 30.0% | |
| !! | TTCTGCATTGATTTCAGAAT+CGG | + | chr5_1:7429705-7429724 | Msa0714680:CDS | 30.0% |
| ACCTTCAGATATAAACCTTA+TGG | + | chr5_1:7429780-7429799 | Msa0714680:CDS | 30.0% | |
| TCCATAAGGTTTATATCTGA+AGG | - | chr5_1:7429784-7429803 | None:intergenic | 30.0% | |
| ATATGATCAGAATCAGACAA+TGG | - | chr5_1:7429934-7429953 | None:intergenic | 30.0% | |
| TATCCATAAGTACATCATCA+GGG | - | chr5_1:7430080-7430099 | None:intergenic | 30.0% | |
| ATATCCATAAGTACATCATC+AGG | - | chr5_1:7430081-7430100 | None:intergenic | 30.0% | |
| TCTCTTTATCAATGAAGTCT+CGG | - | chr5_1:7430190-7430209 | None:intergenic | 30.0% | |
| TACTATTGCCAACTTAAGAT+CGG | + | chr5_1:7430623-7430642 | Msa0714680:CDS | 30.0% | |
| AGTGTCAAGATATCTACTTA+AGG | - | chr5_1:7430709-7430728 | None:intergenic | 30.0% | |
| !! | CAAGATTTTAGCATTAGAAG+TGG | + | chr5_1:7430764-7430783 | Msa0714680:CDS | 30.0% |
| TTTAGCATTAGAAGTGGAAT+TGG | + | chr5_1:7430770-7430789 | Msa0714680:CDS | 30.0% | |
| TGTCTAATTCTTCACAAAAG+TGG | - | chr5_1:7430806-7430825 | None:intergenic | 30.0% | |
| ! | AGAAATAGATTTTCCTGCTA+AGG | - | chr5_1:7431050-7431069 | None:intergenic | 30.0% |
| CTAGTTGTGTTTGTAACTAT+AGG | - | chr5_1:7431254-7431273 | None:intergenic | 30.0% | |
| ! | TTCACCTTCATGTCTTTTAA+GGG | - | chr5_1:7431287-7431306 | None:intergenic | 30.0% |
| ! | TTTCACCTTCATGTCTTTTA+AGG | - | chr5_1:7431288-7431307 | None:intergenic | 30.0% |
| !!! | TTCGCTTGTTTTACAAAACT+TGG | - | chr5_1:7431360-7431379 | None:intergenic | 30.0% |
| CGATGTTAATGTCAATTCTT+TGG | + | chr5_1:7431442-7431461 | Msa0714680:CDS | 30.0% | |
| !! | TGATACACTTGTTTTCGTTT+CGG | - | chr5_1:7431536-7431555 | None:intergenic | 30.0% |
| ! | TAGTTGAATACTTTCTGAGA+GGG | + | chr5_1:7431584-7431603 | Msa0714680:three_prime_UTR | 30.0% |
| ! | ATTTGTAATGGAGAAAAGTG+AGG | + | chr5_1:7431635-7431654 | Msa0714680:three_prime_UTR | 30.0% |
| ! | TTTGTAATGGAGAAAAGTGA+GGG | + | chr5_1:7431636-7431655 | Msa0714680:three_prime_UTR | 30.0% |
| TGAGAAAAAGAGGGTGATAA+AGG | - | chr5_1:7428024-7428043 | None:intergenic | 35.0% | |
| ! | CCTTCTAAGAATGAAGTTGA+AGG | - | chr5_1:7428092-7428111 | None:intergenic | 35.0% |
| CCTTCAACTTCATTCTTAGA+AGG | + | chr5_1:7428089-7428108 | Msa0714680:five_prime_UTR | 35.0% | |
| CTTAGAAGGTCATGAAAGTA+TGG | + | chr5_1:7428103-7428122 | Msa0714680:five_prime_UTR | 35.0% | |
| ! | CTGATTCTGCATGCATATTT+TGG | - | chr5_1:7428304-7428323 | None:intergenic | 35.0% |
| AGCTGAAATGTTGTCAATGA+AGG | + | chr5_1:7429078-7429097 | Msa0714680:CDS | 35.0% | |
| ! | GCAGTTACATTTTGTTAGAG+AGG | + | chr5_1:7429186-7429205 | Msa0714680:CDS | 35.0% |
| ! | GATCGTAATGCATTGATGAT+TGG | + | chr5_1:7429412-7429431 | Msa0714680:CDS | 35.0% |
| ATCCAAAAACCAAGTAGCAT+CGG | + | chr5_1:7429585-7429604 | Msa0714680:CDS | 35.0% | |
| TGCATTGCAAGAGTTATCTT+TGG | + | chr5_1:7429627-7429646 | Msa0714680:CDS | 35.0% | |
| TTGGCATCAATGTCTTACAT+TGG | + | chr5_1:7429646-7429665 | Msa0714680:CDS | 35.0% | |
| ! | GACAATGATCCCAAATGTTT+TGG | - | chr5_1:7429745-7429764 | None:intergenic | 35.0% |
| ! | TCATTGTCATGCCAAAGTTT+TGG | + | chr5_1:7429757-7429776 | Msa0714680:CDS | 35.0% |
| TATCTGAAGGTCCAAAACTT+TGG | - | chr5_1:7429771-7429790 | None:intergenic | 35.0% | |
| TGAAATGGAAAAGTTAGCAG+TGG | + | chr5_1:7429813-7429832 | Msa0714680:CDS | 35.0% | |
| ! | AGAAGCATGAGAAATTTCAG+TGG | - | chr5_1:7429854-7429873 | None:intergenic | 35.0% |
| GTCTGATTCTGATCATATCT+CGG | + | chr5_1:7429936-7429955 | Msa0714680:CDS | 35.0% | |
| TAAAGGGTAATATTCCTGGT+TGG | + | chr5_1:7430001-7430020 | Msa0714680:CDS | 35.0% | |
| !! | TAATATTCCTGGTTGGTTTC+AGG | + | chr5_1:7430008-7430027 | Msa0714680:CDS | 35.0% |
| ! | TAACCCTGATGATGTACTTA+TGG | + | chr5_1:7430074-7430093 | Msa0714680:CDS | 35.0% |
| ! | TGCATTGATCTGGATTATTC+AGG | - | chr5_1:7430122-7430141 | None:intergenic | 35.0% |
| ! | GAATCTAATGTGCATTGATC+TGG | - | chr5_1:7430132-7430151 | None:intergenic | 35.0% |
| GATCAATGCACATTAGATTC+AGG | + | chr5_1:7430132-7430151 | Msa0714680:CDS | 35.0% | |
| ! | ATGTTTTCCACTGAAAAGCA+CGG | - | chr5_1:7430326-7430345 | None:intergenic | 35.0% |
| CGATATGTGTTACAGTATAC+TGG | + | chr5_1:7430377-7430396 | Msa0714680:CDS | 35.0% | |
| ATGTGTTACAGTATACTGGA+TGG | + | chr5_1:7430381-7430400 | Msa0714680:CDS | 35.0% | |
| AACTAACTACAGCCATGAAA+TGG | + | chr5_1:7430433-7430452 | Msa0714680:CDS | 35.0% | |
| GTGATCGATAATCCATTTCA+TGG | - | chr5_1:7430448-7430467 | None:intergenic | 35.0% | |
| TTGATCTTCAAGTCTTCTGT+TGG | - | chr5_1:7430670-7430689 | None:intergenic | 35.0% | |
| TTTATCTTCTCAGCACGAAA+AGG | + | chr5_1:7430956-7430975 | Msa0714680:intron | 35.0% | |
| TTATCTTCTCAGCACGAAAA+GGG | + | chr5_1:7430957-7430976 | Msa0714680:intron | 35.0% | |
| CGTTAATCAGAAAAATGAGC+CGG | + | chr5_1:7430996-7431015 | Msa0714680:CDS | 35.0% | |
| !! | CATCTGTTTTATTCCTTAGC+AGG | + | chr5_1:7431034-7431053 | Msa0714680:intron | 35.0% |
| TGTTTGTTTACATATCCTGC+AGG | + | chr5_1:7431091-7431110 | Msa0714680:intron | 35.0% | |
| TTTACATATCCTGCAGGAAT+GGG | + | chr5_1:7431097-7431116 | Msa0714680:intron | 35.0% | |
| TGTTCCCTTAAAAGACATGA+AGG | + | chr5_1:7431280-7431299 | Msa0714680:CDS | 35.0% | |
| !!! | GCTTAGTCGTCCATATTTTT+TGG | - | chr5_1:7431480-7431499 | None:intergenic | 35.0% |
| GTAGTTGAATACTTTCTGAG+AGG | + | chr5_1:7431583-7431602 | Msa0714680:three_prime_UTR | 35.0% | |
| !!! | CTGCATGCATATTTTGGTCA+AGG | - | chr5_1:7428298-7428317 | None:intergenic | 40.0% |
| ! | TCCTAATGGATCAAAAGCAG+TGG | + | chr5_1:7428344-7428363 | Msa0714680:exon | 40.0% |
| ! | CCTAATGGATCAAAAGCAGT+GGG | + | chr5_1:7428345-7428364 | Msa0714680:exon | 40.0% |
| ATTGTTCAAGAAGCAGTGTC+AGG | + | chr5_1:7428735-7428754 | Msa0714680:CDS | 40.0% | |
| CATGCCTATGACTATAGAAG+TGG | + | chr5_1:7428878-7428897 | Msa0714680:intron | 40.0% | |
| GTCAATGAAGGAACATCTTG+AGG | + | chr5_1:7429090-7429109 | Msa0714680:CDS | 40.0% | |
| TCTTGAGGAATCTATACACC+AGG | + | chr5_1:7429105-7429124 | Msa0714680:CDS | 40.0% | |
| GTGCTCTCAAAGAATGTATG+CGG | + | chr5_1:7429164-7429183 | Msa0714680:CDS | 40.0% | |
| TTAGAGAGGAACAAGAGCAA+AGG | + | chr5_1:7429200-7429219 | Msa0714680:CDS | 40.0% | |
| ACAATTGAATCAAGCAGACG+TGG | + | chr5_1:7429390-7429409 | Msa0714680:CDS | 40.0% | |
| AGTGATGACAATGTTAGCTG+CGG | + | chr5_1:7429670-7429689 | Msa0714680:CDS | 40.0% | |
| !! | CATTGATTTCAGAATCGGAG+CGG | + | chr5_1:7429710-7429729 | Msa0714680:CDS | 40.0% |
| GGATGTAGTTGAAGTCGTAT+TGG | + | chr5_1:7430029-7430048 | Msa0714680:CDS | 40.0% | |
| GAATTGTCGTTATCGTCAAC+AGG | - | chr5_1:7430288-7430307 | None:intergenic | 40.0% | |
| ! | TGAAAAGCACGGATCATGAA+GGG | - | chr5_1:7430315-7430334 | None:intergenic | 40.0% |
| ! | AGTGGAAAACATCCGATTTG+AGG | + | chr5_1:7430334-7430353 | Msa0714680:CDS | 40.0% |
| ! | GTGGAAAACATCCGATTTGA+GGG | + | chr5_1:7430335-7430354 | Msa0714680:CDS | 40.0% |
| CTGTAAGACATCCCTCAAAT+CGG | - | chr5_1:7430349-7430368 | None:intergenic | 40.0% | |
| TTACAGTATACTGGATGGCA+AGG | + | chr5_1:7430386-7430405 | Msa0714680:CDS | 40.0% | |
| !! | GCTTTGGGATGTTTCAAGTA+TGG | + | chr5_1:7430476-7430495 | Msa0714680:CDS | 40.0% |
| ! | TTGGGATGTTTCAAGTATGG+AGG | + | chr5_1:7430479-7430498 | Msa0714680:CDS | 40.0% |
| ! | AACAGATACGAGTCGATTTC+AGG | + | chr5_1:7430590-7430609 | Msa0714680:CDS | 40.0% |
| TTGCAACTCCGATCTTAAGT+TGG | - | chr5_1:7430634-7430653 | None:intergenic | 40.0% | |
| AACTTCAGCTTCAGCTTGAA+AGG | + | chr5_1:7430838-7430857 | Msa0714680:CDS | 40.0% | |
| GATGAACTTACATTTCGCAC+CGG | - | chr5_1:7431018-7431037 | None:intergenic | 40.0% | |
| !! | GCAGGAAAATCTATTTCTGC+TGG | + | chr5_1:7431052-7431071 | Msa0714680:intron | 40.0% |
| TCTGCTGGAATATTGTGTTG+AGG | + | chr5_1:7431067-7431086 | Msa0714680:intron | 40.0% | |
| GTTTACATATCCTGCAGGAA+TGG | + | chr5_1:7431096-7431115 | Msa0714680:intron | 40.0% | |
| TCAACTGCTTCTCAAGGTTA+AGG | - | chr5_1:7431169-7431188 | None:intergenic | 40.0% | |
| TAACCTTGAGAAGCAGTTGA+AGG | + | chr5_1:7431169-7431188 | Msa0714680:CDS | 40.0% | |
| AGCAAGCATCTGATCCAATA+GGG | - | chr5_1:7431321-7431340 | None:intergenic | 40.0% | |
| !!! | AGTCGTCCATATTTTTTGGC+AGG | - | chr5_1:7431476-7431495 | None:intergenic | 40.0% |
| AATATGGACGACTAAGCTTG+TGG | + | chr5_1:7431483-7431502 | Msa0714680:CDS | 40.0% | |
| AGCTTGTGGAAAAGGATGTT+AGG | + | chr5_1:7431497-7431516 | Msa0714680:CDS | 40.0% | |
| GCTTGTGGAAAAGGATGTTA+GGG | + | chr5_1:7431498-7431517 | Msa0714680:CDS | 40.0% | |
| TTTCCTTGAACTCAGAGCGT+CGG | + | chr5_1:7427955-7427974 | Msa0714680:five_prime_UTR | 45.0% | |
| !! | CCCACTGCTTTTGATCCATT+AGG | - | chr5_1:7428348-7428367 | None:intergenic | 45.0% |
| !! | CTCCGATGCTACTTGGTTTT+TGG | - | chr5_1:7429590-7429609 | None:intergenic | 45.0% |
| GTGATGACAATGTTAGCTGC+GGG | + | chr5_1:7429671-7429690 | Msa0714680:CDS | 45.0% | |
| TGATGACAATGTTAGCTGCG+GGG | + | chr5_1:7429672-7429691 | Msa0714680:CDS | 45.0% | |
| TGAAATCAATGCAGAAGCCG+AGG | - | chr5_1:7429701-7429720 | None:intergenic | 45.0% | |
| GGAATTCGCTGCATCGAATT+CGG | + | chr5_1:7429957-7429976 | Msa0714680:CDS | 45.0% | |
| ACTACATCCTGAAACCAACC+AGG | - | chr5_1:7430018-7430037 | None:intergenic | 45.0% | |
| ! | CTGAAAAGCACGGATCATGA+AGG | - | chr5_1:7430316-7430335 | None:intergenic | 45.0% |
| ! | TCATGATCCGTGCTTTTCAG+TGG | + | chr5_1:7430316-7430335 | Msa0714680:CDS | 45.0% |
| !! | CATGGCTGTAGTTAGTTCTG+TGG | - | chr5_1:7430430-7430449 | None:intergenic | 45.0% |
| !! | TCGATCACTGCTTTTCGCTT+TGG | + | chr5_1:7430460-7430479 | Msa0714680:CDS | 45.0% |
| !! | CGATCACTGCTTTTCGCTTT+GGG | + | chr5_1:7430461-7430480 | Msa0714680:CDS | 45.0% |
| ATGGGAGATAACAGCTGCTT+CGG | + | chr5_1:7431115-7431134 | Msa0714680:CDS | 45.0% | |
| AACAGCTGCTTCGGAGAAAT+TGG | + | chr5_1:7431124-7431143 | Msa0714680:CDS | 45.0% | |
| CTGCTTCTCAAGGTTAAGGA+TGG | - | chr5_1:7431165-7431184 | None:intergenic | 45.0% | |
| TTGCCTTCAACTGCTTCTCA+AGG | - | chr5_1:7431175-7431194 | None:intergenic | 45.0% | |
| GAAAAATCGACCGTCCCTAT+TGG | + | chr5_1:7431304-7431323 | Msa0714680:CDS | 45.0% | |
| AGCATCTGATCCAATAGGGA+CGG | - | chr5_1:7431317-7431336 | None:intergenic | 45.0% | |
| CAGCAAGCATCTGATCCAAT+AGG | - | chr5_1:7431322-7431341 | None:intergenic | 45.0% | |
| GACGACTAAGCTTGTGGAAA+AGG | + | chr5_1:7431489-7431508 | Msa0714680:CDS | 45.0% | |
| ! | GTGTGTTTTTCTCTCCACTC+TGG | + | chr5_1:7431665-7431684 | Msa0714680:three_prime_UTR | 45.0% |
| TCTCTCCACTCTGGTGTATA+CGG | + | chr5_1:7431674-7431693 | Msa0714680:three_prime_UTR | 45.0% | |
| TGGATCAAAAGCAGTGGGAG+TGG | + | chr5_1:7428350-7428369 | Msa0714680:CDS | 50.0% | |
| GGATCAAAAGCAGTGGGAGT+GGG | + | chr5_1:7428351-7428370 | Msa0714680:CDS | 50.0% | |
| GATCAAAAGCAGTGGGAGTG+GGG | + | chr5_1:7428352-7428371 | Msa0714680:CDS | 50.0% | |
| ATCAAAAGCAGTGGGAGTGG+GGG | + | chr5_1:7428353-7428372 | Msa0714680:CDS | 50.0% | |
| GGAGTGGGGGAAAAAGACAA+GGG | + | chr5_1:7428366-7428385 | Msa0714680:CDS | 50.0% | |
| !! | GTTTTAGGTGCAGGCACTTC+TGG | + | chr5_1:7428605-7428624 | Msa0714680:intron | 50.0% |
| CGAAGAAAGAGTCGCGCATT+TGG | + | chr5_1:7429138-7429157 | Msa0714680:CDS | 50.0% | |
| !! | TCAAGCTCGCGTCGTTTTAG+AGG | + | chr5_1:7429261-7429280 | Msa0714680:CDS | 50.0% |
| TGAGGCTCGAGTGCTTCAAA+AGG | + | chr5_1:7429474-7429493 | Msa0714680:CDS | 50.0% | |
| ! | ACGAAAAGGGCACGCTCAAA+TGG | + | chr5_1:7430970-7430989 | Msa0714680:CDS | 50.0% |
| CTGTTATCTCCCATTCCTGC+AGG | - | chr5_1:7431109-7431128 | None:intergenic | 50.0% | |
| TTCAGCCGTATACACCAGAG+TGG | - | chr5_1:7431682-7431701 | None:intergenic | 50.0% | |
| ! | TCACCGACGCTCTGAGTTCA+AGG | - | chr5_1:7427961-7427980 | None:intergenic | 55.0% |
| GGGAGTGGGGGAAAAAGACA+AGG | + | chr5_1:7428365-7428384 | Msa0714680:CDS | 55.0% | |
| TGTTAGCTGCGGGGAATCCT+CGG | + | chr5_1:7429681-7429700 | Msa0714680:CDS | 55.0% | |
| TCGGCTGCTCCGATGCTACT+TGG | - | chr5_1:7429597-7429616 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7427936 | 7431799 | 7427936 | ID=Msa0714680;Name=Msa0714680 |
| chr5_1 | mRNA | 7427936 | 7431799 | 7427936 | ID=Msa0714680-mRNA-1;Parent=Msa0714680;Name=Msa0714680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=240|1|1|1|0.8|0.66|6|231|850 |
| chr5_1 | exon | 7427936 | 7428144 | 7427936 | ID=Msa0714680-mRNA-1:exon:3065;Parent=Msa0714680-mRNA-1 |
| chr5_1 | exon | 7428318 | 7428444 | 7428318 | ID=Msa0714680-mRNA-1:exon:3066;Parent=Msa0714680-mRNA-1 |
| chr5_1 | exon | 7428612 | 7428756 | 7428612 | ID=Msa0714680-mRNA-1:exon:3067;Parent=Msa0714680-mRNA-1 |
| chr5_1 | exon | 7429062 | 7430859 | 7429062 | ID=Msa0714680-mRNA-1:exon:3068;Parent=Msa0714680-mRNA-1 |
| chr5_1 | exon | 7430969 | 7431026 | 7430969 | ID=Msa0714680-mRNA-1:exon:3069;Parent=Msa0714680-mRNA-1 |
| chr5_1 | exon | 7431113 | 7431799 | 7431113 | ID=Msa0714680-mRNA-1:exon:3070;Parent=Msa0714680-mRNA-1 |
| chr5_1 | five_prime_UTR | 7427936 | 7428144 | 7427936 | ID=Msa0714680-mRNA-1:five_prime_utr;Parent=Msa0714680-mRNA-1 |
| chr5_1 | five_prime_UTR | 7428318 | 7428348 | 7428318 | ID=Msa0714680-mRNA-1:five_prime_utr;Parent=Msa0714680-mRNA-1 |
| chr5_1 | CDS | 7428349 | 7428444 | 7428349 | ID=Msa0714680-mRNA-1:cds;Parent=Msa0714680-mRNA-1 |
| chr5_1 | CDS | 7428612 | 7428756 | 7428612 | ID=Msa0714680-mRNA-1:cds;Parent=Msa0714680-mRNA-1 |
| chr5_1 | CDS | 7429062 | 7430859 | 7429062 | ID=Msa0714680-mRNA-1:cds;Parent=Msa0714680-mRNA-1 |
| chr5_1 | CDS | 7430969 | 7431026 | 7430969 | ID=Msa0714680-mRNA-1:cds;Parent=Msa0714680-mRNA-1 |
| chr5_1 | CDS | 7431113 | 7431568 | 7431113 | ID=Msa0714680-mRNA-1:cds;Parent=Msa0714680-mRNA-1 |
| chr5_1 | three_prime_UTR | 7431569 | 7431799 | 7431569 | ID=Msa0714680-mRNA-1:three_prime_utr;Parent=Msa0714680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
