Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836130 | XP_003611694.2 | 94.000 | 850 | 50 | 1 | 1 | 850 | 1 | 849 | 0.0 | 1631 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836130 | sp|Q9SLN1|FPP7_ARATH | 33.234 | 674 | 326 | 20 | 216 | 845 | 299 | 892 | 1.54e-79 | 278 |
| Msa0836130 | sp|Q9SLN1|FPP7_ARATH | 43.556 | 225 | 108 | 3 | 1 | 225 | 1 | 206 | 1.06e-42 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836130 | G7K5B5 | 94.000 | 850 | 50 | 1 | 1 | 850 | 1 | 849 | 0.0 | 1631 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0836130 | -0.818601 | 1.800360e-52 | -8.615850e-47 |
| Msa0024680 | Msa0836130 | 0.828461 | 8.878158e-55 | -8.615850e-47 |
| Msa0030310 | Msa0836130 | 0.816047 | 6.761597e-52 | -8.615850e-47 |
| Msa0032370 | Msa0836130 | 0.817714 | 2.857952e-52 | -8.615850e-47 |
| Msa0049400 | Msa0836130 | -0.816289 | 5.972034e-52 | -8.615850e-47 |
| Msa0095380 | Msa0836130 | 0.804743 | 1.866057e-49 | -8.615850e-47 |
| Msa0120330 | Msa0836130 | 0.809527 | 1.810517e-50 | -8.615850e-47 |
| Msa0619980 | Msa0836130 | 0.807742 | 4.355881e-50 | -8.615850e-47 |
| Msa0642650 | Msa0836130 | 0.809133 | 2.200007e-50 | -8.615850e-47 |
| Msa0669850 | Msa0836130 | 0.820564 | 6.417067e-53 | -8.615850e-47 |
| Msa0714680 | Msa0836130 | 0.848883 | 4.614253e-60 | -8.615850e-47 |
| Msa0743680 | Msa0836130 | 0.807545 | 4.797935e-50 | -8.615850e-47 |
| Msa0754720 | Msa0836130 | -0.813975 | 1.949880e-51 | -8.615850e-47 |
| Msa0756690 | Msa0836130 | 0.893605 | 5.380208e-75 | -8.615850e-47 |
| Msa0784620 | Msa0836130 | 0.813142 | 2.973087e-51 | -8.615850e-47 |
| Msa0792790 | Msa0836130 | -0.805891 | 1.072539e-49 | -8.615850e-47 |
| Msa0822990 | Msa0836130 | 0.804258 | 2.354423e-49 | -8.615850e-47 |
| Msa0824730 | Msa0836130 | 0.819642 | 1.043399e-52 | -8.615850e-47 |
| Msa0824910 | Msa0836130 | 0.800478 | 1.414672e-48 | -8.615850e-47 |
| Msa0836130 | Msa0840260 | 0.801850 | 7.411749e-49 | -8.615850e-47 |
| Msa0836130 | Msa0852730 | 0.803245 | 3.822352e-49 | -8.615850e-47 |
| Msa0836130 | Msa0863800 | 0.806550 | 7.790726e-50 | -8.615850e-47 |
| Msa0836130 | Msa0872310 | 0.803221 | 3.866194e-49 | -8.615850e-47 |
| Msa0836130 | Msa0907700 | 0.804528 | 2.069185e-49 | -8.615850e-47 |
| Msa0836130 | Msa0922540 | 0.817368 | 3.419046e-52 | -8.615850e-47 |
| Msa0836130 | Msa0931610 | 0.827094 | 1.891357e-54 | -8.615850e-47 |
| Msa0836130 | Msa0937550 | 0.808077 | 3.697151e-50 | -8.615850e-47 |
| Msa0836130 | Msa0942730 | 0.826157 | 3.165287e-54 | -8.615850e-47 |
| Msa0836130 | Msa0958020 | 0.808387 | 3.175698e-50 | -8.615850e-47 |
| Msa0836130 | Msa0959010 | 0.812081 | 5.072683e-51 | -8.615850e-47 |
| Msa0836130 | Msa1004500 | 0.804464 | 2.133136e-49 | -8.615850e-47 |
| Msa0836130 | Msa1018790 | 0.813201 | 2.885442e-51 | -8.615850e-47 |
| Msa0836130 | Msa1044340 | 0.839938 | 1.174214e-57 | -8.615850e-47 |
| Msa0836130 | Msa1130210 | -0.811482 | 6.849637e-51 | -8.615850e-47 |
| Msa0836130 | Msa1193950 | -0.809766 | 1.609071e-50 | -8.615850e-47 |
| Msa0836130 | Msa1237030 | 0.819892 | 9.145990e-53 | -8.615850e-47 |
| Msa0836130 | Msa1246530 | -0.817477 | 3.232181e-52 | -8.615850e-47 |
| Msa0836130 | Msa1362510 | 0.801589 | 8.384740e-49 | -8.615850e-47 |
| Msa0836130 | Msa1365150 | 0.803263 | 3.789598e-49 | -8.615850e-47 |
| Msa0836130 | Msa1373510 | 0.808186 | 3.504279e-50 | -8.615850e-47 |
| Msa0836130 | Msa1390310 | 0.827002 | 1.989787e-54 | -8.615850e-47 |
| Msa0836130 | Msa1398860 | 0.815638 | 8.342150e-52 | -8.615850e-47 |
| Msa0836130 | Msa1438640 | 0.803362 | 3.614006e-49 | -8.615850e-47 |
| Msa0836130 | Msa1439960 | 0.805933 | 1.050840e-49 | -8.615850e-47 |
| Msa0836130 | Msa1442220 | -0.835780 | 1.375036e-56 | -8.615850e-47 |
| Msa0139900 | Msa0836130 | 0.814455 | 1.527008e-51 | -8.615850e-47 |
| Msa0145950 | Msa0836130 | 0.807299 | 5.409151e-50 | -8.615850e-47 |
| Msa0169620 | Msa0836130 | 0.813381 | 2.634738e-51 | -8.615850e-47 |
| Msa0172350 | Msa0836130 | 0.822654 | 2.109898e-53 | -8.615850e-47 |
| Msa0183620 | Msa0836130 | 0.809756 | 1.616571e-50 | -8.615850e-47 |
| Msa0200970 | Msa0836130 | 0.825069 | 5.731952e-54 | -8.615850e-47 |
| Msa0423360 | Msa0836130 | -0.802301 | 5.988093e-49 | -8.615850e-47 |
| Msa0469910 | Msa0836130 | -0.834350 | 3.152771e-56 | -8.615850e-47 |
| Msa0472380 | Msa0836130 | 0.815922 | 7.211972e-52 | -8.615850e-47 |
| Msa0267760 | Msa0836130 | 0.818429 | 1.968884e-52 | -8.615850e-47 |
| Msa0275400 | Msa0836130 | -0.836979 | 6.811617e-57 | -8.615850e-47 |
| Msa0297920 | Msa0836130 | 0.819492 | 1.129075e-52 | -8.615850e-47 |
| Msa0342910 | Msa0836130 | 0.812032 | 5.197685e-51 | -8.615850e-47 |
| Msa0490300 | Msa0836130 | 0.815927 | 7.192106e-52 | -8.615850e-47 |
| Msa0525340 | Msa0836130 | 0.818496 | 1.901432e-52 | -8.615850e-47 |
| Msa0526710 | Msa0836130 | 0.817653 | 2.949340e-52 | -8.615850e-47 |
| Msa0535030 | Msa0836130 | 0.804529 | 2.067944e-49 | -8.615850e-47 |
| Msa0535060 | Msa0836130 | 0.803708 | 3.064946e-49 | -8.615850e-47 |
| Msa0575990 | Msa0836130 | -0.813280 | 2.772241e-51 | -8.615850e-47 |
| Msa0576100 | Msa0836130 | -0.816751 | 4.704688e-52 | -8.615850e-47 |
| Msa0591770 | Msa0836130 | 0.800803 | 1.214228e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836130 | MtrunA17_Chr5g0401911 | 94.000 | 850 | 50 | 1 | 1 | 850 | 1 | 849 | 0.0 | 1631 |
| Msa0836130 | MtrunA17_Chr4g0053121 | 48.414 | 725 | 247 | 14 | 231 | 836 | 340 | 1056 | 0.0 | 566 |
| Msa0836130 | MtrunA17_Chr4g0053121 | 62.185 | 238 | 81 | 2 | 1 | 237 | 1 | 230 | 4.26e-79 | 277 |
| Msa0836130 | MtrunA17_Chr4g0044561 | 29.258 | 728 | 371 | 20 | 219 | 843 | 309 | 995 | 1.51e-60 | 222 |
| Msa0836130 | MtrunA17_Chr4g0044561 | 33.333 | 240 | 127 | 6 | 1 | 237 | 1 | 210 | 2.33e-19 | 94.0 |
| Msa0836130 | MtrunA17_Chr8g0384881 | 32.474 | 388 | 182 | 10 | 1 | 339 | 1 | 357 | 4.10e-33 | 136 |
| Msa0836130 | MtrunA17_Chr3g0142411 | 38.614 | 202 | 124 | 0 | 31 | 232 | 78 | 279 | 6.65e-33 | 137 |
| Msa0836130 | MtrunA17_Chr1g0159951 | 32.919 | 322 | 153 | 7 | 50 | 339 | 147 | 437 | 5.58e-29 | 124 |
| Msa0836130 | MtrunA17_Chr1g0156371 | 33.333 | 261 | 144 | 4 | 1 | 232 | 1 | 260 | 8.54e-29 | 124 |
| Msa0836130 | MtrunA17_Chr5g0405291 | 36.316 | 190 | 121 | 0 | 43 | 232 | 71 | 260 | 4.46e-25 | 111 |
| Msa0836130 | MtrunA17_Chr3g0130811 | 29.745 | 353 | 193 | 9 | 38 | 354 | 47 | 380 | 2.60e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836130 | AT2G23360.1 | 33.234 | 674 | 326 | 20 | 216 | 845 | 299 | 892 | 1.56e-80 | 278 |
| Msa0836130 | AT2G23360.1 | 43.556 | 225 | 108 | 3 | 1 | 225 | 1 | 206 | 1.08e-43 | 171 |
| Msa0836130 | AT1G19835.6 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 6.99e-33 | 137 |
| Msa0836130 | AT1G19835.5 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 6.99e-33 | 137 |
| Msa0836130 | AT1G19835.3 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 6.99e-33 | 137 |
| Msa0836130 | AT1G19835.1 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 6.99e-33 | 137 |
| Msa0836130 | AT1G19835.4 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 6.99e-33 | 137 |
| Msa0836130 | AT1G19835.2 | 34.800 | 250 | 145 | 1 | 1 | 232 | 1 | 250 | 6.99e-33 | 137 |
| Msa0836130 | AT4G36120.2 | 32.308 | 260 | 148 | 4 | 1 | 232 | 1 | 260 | 3.83e-28 | 122 |
| Msa0836130 | AT4G36120.1 | 32.308 | 260 | 148 | 4 | 1 | 232 | 1 | 260 | 3.83e-28 | 122 |
| Msa0836130 | AT1G77580.4 | 32.903 | 310 | 150 | 6 | 39 | 339 | 20 | 280 | 4.07e-27 | 118 |
| Msa0836130 | AT1G77580.2 | 32.903 | 310 | 150 | 6 | 39 | 339 | 54 | 314 | 4.46e-27 | 118 |
| Msa0836130 | AT1G77580.3 | 32.903 | 310 | 150 | 6 | 39 | 339 | 54 | 314 | 4.46e-27 | 118 |
| Msa0836130 | AT1G77580.1 | 32.039 | 309 | 154 | 5 | 39 | 339 | 20 | 280 | 1.28e-26 | 116 |
| Msa0836130 | AT1G47900.2 | 30.583 | 206 | 143 | 0 | 41 | 246 | 109 | 314 | 4.17e-24 | 109 |
| Msa0836130 | AT1G47900.2 | 27.465 | 568 | 320 | 24 | 219 | 727 | 415 | 949 | 1.99e-11 | 68.6 |
| Msa0836130 | AT1G47900.3 | 30.583 | 206 | 143 | 0 | 41 | 246 | 109 | 314 | 4.68e-24 | 109 |
| Msa0836130 | AT1G47900.3 | 27.817 | 568 | 320 | 24 | 219 | 727 | 415 | 951 | 1.49e-12 | 72.4 |
| Msa0836130 | AT1G47900.1 | 30.583 | 206 | 143 | 0 | 41 | 246 | 109 | 314 | 4.68e-24 | 109 |
| Msa0836130 | AT1G47900.1 | 27.817 | 568 | 320 | 24 | 219 | 727 | 415 | 951 | 1.49e-12 | 72.4 |
| Msa0836130 | AT1G21810.3 | 30.159 | 315 | 168 | 10 | 62 | 372 | 14 | 280 | 2.99e-21 | 99.8 |
| Msa0836130 | AT1G21810.1 | 30.159 | 315 | 168 | 10 | 62 | 372 | 14 | 280 | 2.99e-21 | 99.8 |
| Msa0836130 | AT3G05270.3 | 30.028 | 353 | 198 | 10 | 1 | 339 | 1 | 318 | 5.23e-21 | 98.6 |
| Msa0836130 | AT3G05270.2 | 30.028 | 353 | 198 | 10 | 1 | 339 | 1 | 318 | 5.23e-21 | 98.6 |
| Msa0836130 | AT3G05270.1 | 30.028 | 353 | 198 | 10 | 1 | 339 | 1 | 318 | 5.23e-21 | 98.6 |
| Msa0836130 | AT3G19370.3 | 39.759 | 166 | 83 | 6 | 587 | 745 | 476 | 631 | 1.47e-20 | 97.8 |
| Msa0836130 | AT3G19370.1 | 39.759 | 166 | 83 | 6 | 587 | 745 | 476 | 631 | 1.47e-20 | 97.8 |
| Msa0836130 | AT3G19370.2 | 39.759 | 166 | 83 | 6 | 587 | 745 | 476 | 631 | 1.47e-20 | 97.8 |
Find 127 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTCCTGGTTGGTTTC+AGG | 0.209069 | 5_4:-9561379 | Msa0836130:CDS |
| AAAGCATTACTCTTGAAAAT+TGG | 0.216186 | 5_4:+9561868 | None:intergenic |
| TGTACTTATGGATATTAAAT+TGG | 0.243388 | 5_4:-9561301 | Msa0836130:CDS |
| TGCAATGCAATATTACTTCT+AGG | 0.243634 | 5_4:+9561774 | None:intergenic |
| CGATGTTAATGTCAATTCTT+TGG | 0.254157 | 5_4:-9559945 | Msa0836130:CDS |
| ATGTTTCAATGACATATTAA+AGG | 0.254252 | 5_4:-9561403 | Msa0836130:CDS |
| AGTGAAAATGAAGCTAAAAT+TGG | 0.273638 | 5_4:-9560847 | Msa0836130:CDS |
| GACAATGATCCCAAATGTTT+TGG | 0.275589 | 5_4:+9561645 | None:intergenic |
| TAACCCTGATGATGTACTTA+TGG | 0.281079 | 5_4:-9561313 | Msa0836130:CDS |
| ACCTTCAGATATAAACCTTA+TGG | 0.282326 | 5_4:-9561607 | Msa0836130:CDS |
| TCTCTTCACTCTGGTGTATA+CGG | 0.284690 | 5_4:-9559713 | Msa0836130:three_prime_UTR |
| AACAGCTGCTTCGGAGAAAT+TGG | 0.292771 | 5_4:-9560263 | Msa0836130:CDS |
| TTTAGCATTAGAAGTGGAAT+TGG | 0.295970 | 5_4:-9560617 | Msa0836130:CDS |
| GTTTAAAAGTCCAAAACATT+TGG | 0.296321 | 5_4:-9561655 | Msa0836130:CDS |
| TCATTGTCATGCCAAAGTTT+TGG | 0.300151 | 5_4:-9561630 | Msa0836130:CDS |
| AACAGATACGAGTCTATTTC+AGG | 0.303743 | 5_4:-9560797 | Msa0836130:CDS |
| AGTTGAAGGTTCATAAGTTT+AGG | 0.306468 | 5_4:+9563300 | None:intergenic |
| TATGGATGATTTCATTGAAA+TGG | 0.312296 | 5_4:-9561589 | Msa0836130:CDS |
| CGAAGAAAGAGTCGCGCATT+TGG | 0.328670 | 5_4:-9562249 | Msa0836130:CDS |
| TGCATTGCAAGAGTTATCTT+TGG | 0.328860 | 5_4:-9561760 | Msa0836130:CDS |
| CCTTCAACTTCATTCTTAGA+AGG | 0.334402 | 5_4:-9563286 | Msa0836130:five_prime_UTR |
| GTTGAAGGTTCATAAGTTTA+GGG | 0.336570 | 5_4:+9563301 | None:intergenic |
| GCTTTGGGATGTTTCAAGTA+TGG | 0.350475 | 5_4:-9560911 | Msa0836130:CDS |
| TTTAAAAGTCCAAAACATTT+GGG | 0.353219 | 5_4:-9561654 | Msa0836130:CDS |
| CGATATGTGTTACAGTATAC+TGG | 0.359514 | 5_4:-9561010 | Msa0836130:CDS |
| GGAATTCGCTGCATCGAATT+CGG | 0.362627 | 5_4:-9561430 | Msa0836130:CDS |
| CAGCAAGCATCTGATCCAAT+AGG | 0.362904 | 5_4:+9560068 | None:intergenic |
| TTTCTTCGTAAATTAGTTCC+TGG | 0.368040 | 5_4:+9562264 | None:intergenic |
| TGCATTGATCTGGATTATTC+AGG | 0.371659 | 5_4:+9561268 | None:intergenic |
| CTTAGAAGGTCATGTAAGTA+TGG | 0.374854 | 5_4:-9563272 | Msa0836130:five_prime_UTR |
| AGCTTGTGGAAAAGGATGTT+AGG | 0.384604 | 5_4:-9559890 | Msa0836130:CDS |
| ATATTAAAGGGTAATATTCC+TGG | 0.390428 | 5_4:-9561390 | Msa0836130:CDS |
| TCAACTGCTTCTCAAGGTTA+AGG | 0.391161 | 5_4:+9560221 | None:intergenic |
| GAATCTAATGTGCATTGATC+TGG | 0.392218 | 5_4:+9561258 | None:intergenic |
| AACATTGCTGTAATTTGTAA+TGG | 0.396358 | 5_4:-9559764 | Msa0836130:three_prime_UTR |
| TAGGCTGCTCCGATGCTACT+TGG | 0.396898 | 5_4:+9561793 | None:intergenic |
| TCACCGACGCTCTGAGTTCA+AGG | 0.405881 | 5_4:+9563417 | None:intergenic |
| TGTTTCAATGACATATTAAA+GGG | 0.406955 | 5_4:-9561402 | Msa0836130:CDS |
| TTTCAATGAAATCATCCATA+AGG | 0.409508 | 5_4:+9561592 | None:intergenic |
| TTCTGCATTGATTTCAGAAT+CGG | 0.409535 | 5_4:-9561682 | Msa0836130:CDS |
| GAATTGTCGTTATCGTCAAC+AGG | 0.413979 | 5_4:+9561102 | None:intergenic |
| GATCGTAATGCATTGATGAT+TGG | 0.414393 | 5_4:-9561975 | Msa0836130:CDS |
| AGAGATATGAATAAATCAAT+AGG | 0.415065 | 5_4:-9561159 | Msa0836130:CDS |
| GTGATCGATAATCCATTTCA+TGG | 0.417721 | 5_4:+9560942 | None:intergenic |
| TTGATCTTCAAGTCTTCTGT+TGG | 0.420207 | 5_4:+9560720 | None:intergenic |
| AACTAACTACAGCCATGAAA+TGG | 0.421739 | 5_4:-9560954 | Msa0836130:CDS |
| GACGACTAAGCTTGTGGAAA+AGG | 0.426167 | 5_4:-9559898 | Msa0836130:CDS |
| CTAGTTGTGTTTGTAACTAT+AGG | 0.427992 | 5_4:+9560136 | None:intergenic |
| ATATCCATAAGTACATCATC+AGG | 0.434452 | 5_4:+9561309 | None:intergenic |
| TGTCTAATTCTTCACAAAAG+TGG | 0.435433 | 5_4:+9560584 | None:intergenic |
| GAAGCAAATAATGAAACAAT+TGG | 0.438921 | 5_4:-9561510 | Msa0836130:CDS |
| GATCAATGCACATTAGATTC+AGG | 0.440457 | 5_4:-9561255 | Msa0836130:CDS |
| TACAGAAACTGAATTAAAAG+AGG | 0.449220 | 5_4:-9560653 | Msa0836130:CDS |
| CCTTCTAAGAATGAAGTTGA+AGG | 0.451071 | 5_4:+9563286 | None:intergenic |
| TATCTGAAGGTCCAAAACTT+TGG | 0.451418 | 5_4:+9561619 | None:intergenic |
| TTTATCTTCTCAGCACGAAA+AGG | 0.451638 | 5_4:-9560431 | Msa0836130:intron |
| GGATGTAGTTGAAGTCGTAT+TGG | 0.452694 | 5_4:-9561358 | Msa0836130:CDS |
| GTGGAAAACATCCGATTTGA+GGG | 0.454638 | 5_4:-9561052 | Msa0836130:CDS |
| AACTTCAGCTTCAGCTTGAA+AGG | 0.457589 | 5_4:-9560549 | Msa0836130:intron |
| TAACCTTGAGAAGCAGTTGA+AGG | 0.457699 | 5_4:-9560218 | Msa0836130:CDS |
| GATTTATGATGCTGTAATGA+AGG | 0.465323 | 5_4:-9562165 | Msa0836130:CDS |
| ATGGGAGATAACAGCTGCTT+CGG | 0.465824 | 5_4:-9560272 | Msa0836130:CDS |
| AAAATGATTGAGCTTATTGA+AGG | 0.474560 | 5_4:-9561135 | Msa0836130:CDS |
| TTATCTTCTCAGCACGAAAA+GGG | 0.476370 | 5_4:-9560430 | Msa0836130:intron |
| AGCTGAAATGTTGTCAATGA+AGG | 0.478178 | 5_4:-9562309 | Msa0836130:CDS |
| ACGAAAAGGGCACGCTCAAA+TGG | 0.478503 | 5_4:-9560417 | Msa0836130:CDS |
| AGCAAGCATCTGATCCAATA+GGG | 0.480960 | 5_4:+9560069 | None:intergenic |
| AGTGGAAAACATCCGATTTG+AGG | 0.484506 | 5_4:-9561053 | Msa0836130:CDS |
| GGATCAAAAGCAGTGGGAGT+GGG | 0.489362 | 5_4:-9563036 | Msa0836130:CDS |
| TGGATCAAAAGCAGTGGGAG+TGG | 0.491574 | 5_4:-9563037 | Msa0836130:CDS |
| CTGTAAGACATCCCTCAAAT+CGG | 0.491698 | 5_4:+9561041 | None:intergenic |
| ATAAGTTTAGGGGCAAGAAA+TGG | 0.492663 | 5_4:+9563312 | None:intergenic |
| GCATTTGGATCGTGCTCTCA+AGG | 0.499273 | 5_4:-9562234 | Msa0836130:CDS |
| ATTGTTCAAGAAGCAGTGTC+AGG | 0.505727 | 5_4:-9562652 | Msa0836130:intron |
| AGTGTCAAGATATCTACTTA+AGG | 0.511028 | 5_4:+9560681 | None:intergenic |
| GATCAAAAGCAGTGGGAGTG+GGG | 0.513006 | 5_4:-9563035 | Msa0836130:CDS |
| GTCTGATTCTGATCATATCT+CGG | 0.515525 | 5_4:-9561451 | Msa0836130:CDS |
| TAATACTTCTCTGATGTATG+AGG | 0.519659 | 5_4:-9561931 | Msa0836130:CDS |
| CTGCTTCTCAAGGTTAAGGA+TGG | 0.523429 | 5_4:+9560225 | None:intergenic |
| TTGCAACTCCGATCTTAAGT+TGG | 0.524829 | 5_4:+9560756 | None:intergenic |
| TGTTCCCTTAAAAGACATGA+AGG | 0.529746 | 5_4:-9560107 | Msa0836130:CDS |
| TCTCTTTATCAATGAAGTCT+CGG | 0.537360 | 5_4:+9561200 | None:intergenic |
| GCTTGTGGAAAAGGATGTTA+GGG | 0.537823 | 5_4:-9559889 | Msa0836130:CDS |
| TCCATAAGGTTTATATCTGA+AGG | 0.537970 | 5_4:+9561606 | None:intergenic |
| AACTATAGGACGACGATGAG+CGG | 0.540590 | 5_4:+9560150 | None:intergenic |
| CATGGCTGTAGTTAGTTCTG+TGG | 0.541228 | 5_4:+9560960 | None:intergenic |
| TTGCCTTCAACTGCTTCTCA+AGG | 0.543029 | 5_4:+9560215 | None:intergenic |
| GTGATGACAATGTTAGCTGC+GGG | 0.546271 | 5_4:-9561716 | Msa0836130:CDS |
| TGAGGCTCGAGTGCTTCAAA+AGG | 0.551293 | 5_4:-9561913 | Msa0836130:CDS |
| TGTTAGCTGCGGGGAATCCT+CGG | 0.552410 | 5_4:-9561706 | Msa0836130:CDS |
| CTGAAAAGCACGGATCATGA+AGG | 0.555921 | 5_4:+9561074 | None:intergenic |
| TTAGAGAGGAACAAGAGCAA+AGG | 0.564423 | 5_4:-9562187 | Msa0836130:CDS |
| TAGTTGAATACTTTCTGAGA+GGG | 0.565156 | 5_4:-9559803 | Msa0836130:three_prime_UTR |
| ACAATTGAATCAAGCAGAGG+TGG | 0.571049 | 5_4:-9561997 | Msa0836130:CDS |
| TTTGTAATGGAGAGAAGTGA+GGG | 0.571132 | 5_4:-9559751 | Msa0836130:three_prime_UTR |
| TACTATTGCCAACTTAAGAT+CGG | 0.573752 | 5_4:-9560764 | Msa0836130:CDS |
| TTGGGATGTTTCAAGTATGG+AGG | 0.576602 | 5_4:-9560908 | Msa0836130:CDS |
| TTGGCATCAATGTCTTACAT+TGG | 0.578470 | 5_4:-9561741 | Msa0836130:CDS |
| TAAAGGGTAATATTCCTGGT+TGG | 0.583360 | 5_4:-9561386 | Msa0836130:CDS |
| TCCTAATGGATCAAAAGCAG+TGG | 0.590014 | 5_4:-9563043 | Msa0836130:exon |
| TGAAATGGAAAAGTTAGCAG+TGG | 0.590166 | 5_4:-9561574 | Msa0836130:CDS |
| AATATGGACGACTAAGCTTG+TGG | 0.590327 | 5_4:-9559904 | Msa0836130:CDS |
| ATTTGTAATGGAGAGAAGTG+AGG | 0.596142 | 5_4:-9559752 | Msa0836130:three_prime_UTR |
| CCTAATGGATCAAAAGCAGT+GGG | 0.599875 | 5_4:-9563042 | Msa0836130:exon |
| TTGAAGGTTCATAAGTTTAG+GGG | 0.600793 | 5_4:+9563302 | None:intergenic |
| TGAAAAGCACGGATCATGAA+GGG | 0.602673 | 5_4:+9561075 | None:intergenic |
| TACTTCAAATGAAAATGAAG+AGG | 0.605732 | 5_4:-9562964 | Msa0836130:intron |
| TTTCCTTGAACTCAGAGCGT+CGG | 0.612395 | 5_4:-9563420 | Msa0836130:five_prime_UTR |
| ATCAAAAGCAGTGGGAGTGG+GGG | 0.619363 | 5_4:-9563034 | Msa0836130:CDS |
| GATGAACTTACATTTCGCAC+CGG | 0.623235 | 5_4:+9560372 | None:intergenic |
| AGCATCTGATCCAATAGGGA+CGG | 0.624671 | 5_4:+9560073 | None:intergenic |
| GTCAATGAAGGAACATCTCG+AGG | 0.624828 | 5_4:-9562297 | Msa0836130:CDS |
| AAATGATTGAGCTTATTGAA+GGG | 0.624850 | 5_4:-9561134 | Msa0836130:CDS |
| GTAGTTGAATACTTTCTGAG+AGG | 0.635294 | 5_4:-9559804 | Msa0836130:three_prime_UTR |
| TCTCGAGGAATCTATACACC+AGG | 0.636451 | 5_4:-9562282 | Msa0836130:CDS |
| TGAAATCAATGCAGAAGCCG+AGG | 0.638690 | 5_4:+9561689 | None:intergenic |
| ACTACATCCTGAAACCAACC+AGG | 0.644112 | 5_4:+9561372 | None:intergenic |
| ATGTGTTACAGTATACTGGA+TGG | 0.649581 | 5_4:-9561006 | Msa0836130:CDS |
| TTACAGTATACTGGATGGCA+AGG | 0.656212 | 5_4:-9561001 | Msa0836130:CDS |
| TATCCATAAGTACATCATCA+GGG | 0.668515 | 5_4:+9561310 | None:intergenic |
| ATATGATCAGAATCAGACAA+TGG | 0.671120 | 5_4:+9561456 | None:intergenic |
| CATTGATTTCAGAATCGGAG+CGG | 0.673449 | 5_4:-9561677 | Msa0836130:CDS |
| AAGACAATTGAATCAAGCAG+AGG | 0.682347 | 5_4:-9562000 | Msa0836130:CDS |
| AGTGATGACAATGTTAGCTG+CGG | 0.696806 | 5_4:-9561717 | Msa0836130:CDS |
| AGAAGCATGAGAAATTTCAG+TGG | 0.704549 | 5_4:+9561536 | None:intergenic |
| GTGCTCTCAAGGAATGTATG+CGG | 0.712810 | 5_4:-9562223 | Msa0836130:CDS |
| TGATGACAATGTTAGCTGCG+GGG | 0.725043 | 5_4:-9561715 | Msa0836130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTTATTTATATAT+TGG | - | chr5_4:9560154-9560173 | Msa0836130:CDS | 0.0% |
| !! | TACATGATTTAATTATTATA+TGG | - | chr5_4:9559855-9559874 | Msa0836130:CDS | 10.0% |
| !! | ATAACTAATATATATATTGA+AGG | + | chr5_4:9562543-9562562 | None:intergenic | 10.0% |
| !!! | TGGAATAAATTATTTTGTTA+AGG | - | chr5_4:9559797-9559816 | Msa0836130:three_prime_UTR | 15.0% |
| !! | AAAATAATAGATGTTAGAAA+AGG | + | chr5_4:9560124-9560143 | None:intergenic | 15.0% |
| !!! | TTGTTTTATTTTTCTGTTTT+AGG | - | chr5_4:9560252-9560271 | Msa0836130:CDS | 15.0% |
| !!! | TTTTTTAAGAGCAGTTATAA+TGG | - | chr5_4:9560676-9560695 | Msa0836130:CDS | 20.0% |
| !! | CTTATAAAAGTTTCATTTGA+AGG | - | chr5_4:9560702-9560721 | Msa0836130:CDS | 20.0% |
| !! | TTTAAAAGTCCAAAACATTT+GGG | - | chr5_4:9561395-9561414 | Msa0836130:CDS | 20.0% |
| !! | ATGTTTCAATGACATATTAA+AGG | - | chr5_4:9561646-9561665 | Msa0836130:CDS | 20.0% |
| !! | TGTTTCAATGACATATTAAA+GGG | - | chr5_4:9561647-9561666 | Msa0836130:CDS | 20.0% |
| !! | TGTACTTATGGATATTAAAT+TGG | - | chr5_4:9561748-9561767 | Msa0836130:CDS | 20.0% |
| !! | AGAGATATGAATAAATCAAT+AGG | - | chr5_4:9561890-9561909 | Msa0836130:CDS | 20.0% |
| !! | CATCAAAAAGAAATTTGATT+GGG | - | chr5_4:9562168-9562187 | Msa0836130:CDS | 20.0% |
| !! | TTGAAGACTAATTTTCCTAA+TGG | - | chr5_4:9559992-9560011 | Msa0836130:CDS | 25.0% |
| ! | TACTTCAAATGAAAATGAAG+AGG | - | chr5_4:9560085-9560104 | Msa0836130:CDS | 25.0% |
| !!! | GATTCTAAAATGCAACTAAT+TGG | - | chr5_4:9560216-9560235 | Msa0836130:CDS | 25.0% |
| ! | TATAGAAGTGGTTATGATAA+GGG | - | chr5_4:9560552-9560571 | Msa0836130:CDS | 25.0% |
| ! | TAAAAGTTTCATTTGAAGGA+TGG | - | chr5_4:9560706-9560725 | Msa0836130:CDS | 25.0% |
| ! | AAAAGTTTCATTTGAAGGAT+GGG | - | chr5_4:9560707-9560726 | Msa0836130:CDS | 25.0% |
| !! | AAAGCATTACTCTTGAAAAT+TGG | + | chr5_4:9561184-9561203 | None:intergenic | 25.0% |
| ! | GTTTAAAAGTCCAAAACATT+TGG | - | chr5_4:9561394-9561413 | Msa0836130:CDS | 25.0% |
| ! | TTTCAATGAAATCATCCATA+AGG | + | chr5_4:9561460-9561479 | None:intergenic | 25.0% |
| ! | TATGGATGATTTCATTGAAA+TGG | - | chr5_4:9561460-9561479 | Msa0836130:CDS | 25.0% |
| ! | GAAGCAAATAATGAAACAAT+TGG | - | chr5_4:9561539-9561558 | Msa0836130:CDS | 25.0% |
| ! | ATATTAAAGGGTAATATTCC+TGG | - | chr5_4:9561659-9561678 | Msa0836130:CDS | 25.0% |
| ! | AAAATGATTGAGCTTATTGA+AGG | - | chr5_4:9561914-9561933 | Msa0836130:CDS | 25.0% |
| ! | AAATGATTGAGCTTATTGAA+GGG | - | chr5_4:9561915-9561934 | Msa0836130:CDS | 25.0% |
| !! | CCAATCAAATTTCTTTTTGA+TGG | + | chr5_4:9562170-9562189 | None:intergenic | 25.0% |
| ! | CCATCAAAAAGAAATTTGAT+TGG | - | chr5_4:9562167-9562186 | Msa0836130:CDS | 25.0% |
| ! | AGTGAAAATGAAGCTAAAAT+TGG | - | chr5_4:9562202-9562221 | Msa0836130:CDS | 25.0% |
| ! | TACAGAAACTGAATTAAAAG+AGG | - | chr5_4:9562396-9562415 | Msa0836130:intron | 25.0% |
| !! | GCAATACTGTAATATGATTT+TGG | - | chr5_4:9562567-9562586 | Msa0836130:intron | 25.0% |
| !!! | AAAACTACAATCTTTTCAAG+TGG | + | chr5_4:9563060-9563079 | None:intergenic | 25.0% |
| !!! | GAAAAGATTGTAGTTTTGAA+AGG | - | chr5_4:9563063-9563082 | Msa0836130:five_prime_UTR | 25.0% |
| !!! | GTAGTTTTGAAAGGATTAAA+AGG | - | chr5_4:9563072-9563091 | Msa0836130:five_prime_UTR | 25.0% |
| !!! | ATATTTTTTGGCAGGTAAAA+TGG | + | chr5_4:9563130-9563149 | None:intergenic | 25.0% |
| !! | ATTTTACCTGCCAAAAAATA+TGG | - | chr5_4:9563129-9563148 | Msa0836130:intron | 25.0% |
| !! | AACATTGCTGTAATTTGTAA+TGG | - | chr5_4:9563285-9563304 | Msa0836130:five_prime_UTR | 25.0% |
| !! | CTTTGAAGTTGAGAAAAAGA+GGG | + | chr5_4:9559707-9559726 | None:intergenic | 30.0% |
| !! | ACTTTGAAGTTGAGAAAAAG+AGG | + | chr5_4:9559708-9559727 | None:intergenic | 30.0% |
| TTGAAGGTTCATAAGTTTAG+GGG | + | chr5_4:9559750-9559769 | None:intergenic | 30.0% | |
| GTTGAAGGTTCATAAGTTTA+GGG | + | chr5_4:9559751-9559770 | None:intergenic | 30.0% | |
| AGTTGAAGGTTCATAAGTTT+AGG | + | chr5_4:9559752-9559771 | None:intergenic | 30.0% | |
| GTAGTCATGATCAAACTATT+TGG | - | chr5_4:9559898-9559917 | Msa0836130:CDS | 30.0% | |
| TCAAATGAAAATGAAGAGGT+AGG | - | chr5_4:9560089-9560108 | Msa0836130:CDS | 30.0% | |
| !! | TATTTTTCTGTTTTAGGTGC+AGG | - | chr5_4:9560258-9560277 | Msa0836130:CDS | 30.0% |
| TCTGGCTGATAAAGAAAAAT+TGG | - | chr5_4:9560285-9560304 | Msa0836130:intron | 30.0% | |
| ATAACCACTTCTATAGTCAT+AGG | + | chr5_4:9560547-9560566 | None:intergenic | 30.0% | |
| CTATAGAAGTGGTTATGATA+AGG | - | chr5_4:9560551-9560570 | Msa0836130:CDS | 30.0% | |
| ATAGAAGTGGTTATGATAAG+GGG | - | chr5_4:9560553-9560572 | Msa0836130:CDS | 30.0% | |
| TCTCAATCAATCATAACAGT+CGG | + | chr5_4:9560594-9560613 | None:intergenic | 30.0% | |
| ACTCTTTACACTTACAGTTA+CGG | - | chr5_4:9560622-9560641 | Msa0836130:CDS | 30.0% | |
| TTTCTTCGTAAATTAGTTCC+TGG | + | chr5_4:9560788-9560807 | None:intergenic | 30.0% | |
| GATTTATGATGCTGTAATGA+AGG | - | chr5_4:9560884-9560903 | Msa0836130:CDS | 30.0% | |
| TAATACTTCTCTGATGTATG+AGG | - | chr5_4:9561118-9561137 | Msa0836130:CDS | 30.0% | |
| TGCAATGCAATATTACTTCT+AGG | + | chr5_4:9561278-9561297 | None:intergenic | 30.0% | |
| !! | TTCTGCATTGATTTCAGAAT+CGG | - | chr5_4:9561367-9561386 | Msa0836130:CDS | 30.0% |
| ACCTTCAGATATAAACCTTA+TGG | - | chr5_4:9561442-9561461 | Msa0836130:CDS | 30.0% | |
| TCCATAAGGTTTATATCTGA+AGG | + | chr5_4:9561446-9561465 | None:intergenic | 30.0% | |
| ATATGATCAGAATCAGACAA+TGG | + | chr5_4:9561596-9561615 | None:intergenic | 30.0% | |
| TATCCATAAGTACATCATCA+GGG | + | chr5_4:9561742-9561761 | None:intergenic | 30.0% | |
| ATATCCATAAGTACATCATC+AGG | + | chr5_4:9561743-9561762 | None:intergenic | 30.0% | |
| TCTCTTTATCAATGAAGTCT+CGG | + | chr5_4:9561852-9561871 | None:intergenic | 30.0% | |
| TACTATTGCCAACTTAAGAT+CGG | - | chr5_4:9562285-9562304 | Msa0836130:CDS | 30.0% | |
| AGTGTCAAGATATCTACTTA+AGG | + | chr5_4:9562371-9562390 | None:intergenic | 30.0% | |
| !! | CAAGATTTTAGCATTAGAAG+TGG | - | chr5_4:9562426-9562445 | Msa0836130:intron | 30.0% |
| TTTAGCATTAGAAGTGGAAT+TGG | - | chr5_4:9562432-9562451 | Msa0836130:intron | 30.0% | |
| TGTCTAATTCTTCACAAAAG+TGG | + | chr5_4:9562468-9562487 | None:intergenic | 30.0% | |
| ! | AGAAATAGATTTTCCTGCTA+AGG | + | chr5_4:9562712-9562731 | None:intergenic | 30.0% |
| CTAGTTGTGTTTGTAACTAT+AGG | + | chr5_4:9562916-9562935 | None:intergenic | 30.0% | |
| ! | TTCACCTTCATGTCTTTTAA+GGG | + | chr5_4:9562949-9562968 | None:intergenic | 30.0% |
| ! | TTTCACCTTCATGTCTTTTA+AGG | + | chr5_4:9562950-9562969 | None:intergenic | 30.0% |
| !!! | TTCGCTTGTTTTACAAAACT+TGG | + | chr5_4:9563022-9563041 | None:intergenic | 30.0% |
| CGATGTTAATGTCAATTCTT+TGG | - | chr5_4:9563104-9563123 | Msa0836130:intron | 30.0% | |
| !! | TGATACACTTGTTTTCGTTT+CGG | + | chr5_4:9563198-9563217 | None:intergenic | 30.0% |
| ! | TAGTTGAATACTTTCTGAGA+GGG | - | chr5_4:9563246-9563265 | Msa0836130:intron | 30.0% |
| TGAGAAAAAGAGGGTGATAA+AGG | + | chr5_4:9559698-9559717 | None:intergenic | 35.0% | |
| ATAAGTTTAGGGGCAAGAAA+TGG | + | chr5_4:9559740-9559759 | None:intergenic | 35.0% | |
| ! | CCTTCTAAGAATGAAGTTGA+AGG | + | chr5_4:9559766-9559785 | None:intergenic | 35.0% |
| CCTTCAACTTCATTCTTAGA+AGG | - | chr5_4:9559763-9559782 | Msa0836130:three_prime_UTR | 35.0% | |
| CTTAGAAGGTCATGTAAGTA+TGG | - | chr5_4:9559777-9559796 | Msa0836130:three_prime_UTR | 35.0% | |
| ! | CTGATTCTGCATGCATATTT+TGG | + | chr5_4:9559966-9559985 | None:intergenic | 35.0% |
| AGCTGAAATGTTGTCAATGA+AGG | - | chr5_4:9560740-9560759 | Msa0836130:CDS | 35.0% | |
| ! | GCAGTTACATTTTGTTAGAG+AGG | - | chr5_4:9560848-9560867 | Msa0836130:CDS | 35.0% |
| AAGACAATTGAATCAAGCAG+AGG | - | chr5_4:9561049-9561068 | Msa0836130:CDS | 35.0% | |
| ! | GATCGTAATGCATTGATGAT+TGG | - | chr5_4:9561074-9561093 | Msa0836130:CDS | 35.0% |
| ATCCAAAAACCAAGTAGCAT+CGG | - | chr5_4:9561247-9561266 | Msa0836130:CDS | 35.0% | |
| TGCATTGCAAGAGTTATCTT+TGG | - | chr5_4:9561289-9561308 | Msa0836130:CDS | 35.0% | |
| TTGGCATCAATGTCTTACAT+TGG | - | chr5_4:9561308-9561327 | Msa0836130:CDS | 35.0% | |
| ! | GACAATGATCCCAAATGTTT+TGG | + | chr5_4:9561407-9561426 | None:intergenic | 35.0% |
| ! | TCATTGTCATGCCAAAGTTT+TGG | - | chr5_4:9561419-9561438 | Msa0836130:CDS | 35.0% |
| TATCTGAAGGTCCAAAACTT+TGG | + | chr5_4:9561433-9561452 | None:intergenic | 35.0% | |
| TGAAATGGAAAAGTTAGCAG+TGG | - | chr5_4:9561475-9561494 | Msa0836130:CDS | 35.0% | |
| ! | AGAAGCATGAGAAATTTCAG+TGG | + | chr5_4:9561516-9561535 | None:intergenic | 35.0% |
| GTCTGATTCTGATCATATCT+CGG | - | chr5_4:9561598-9561617 | Msa0836130:CDS | 35.0% | |
| TAAAGGGTAATATTCCTGGT+TGG | - | chr5_4:9561663-9561682 | Msa0836130:CDS | 35.0% | |
| !! | TAATATTCCTGGTTGGTTTC+AGG | - | chr5_4:9561670-9561689 | Msa0836130:CDS | 35.0% |
| ! | TAACCCTGATGATGTACTTA+TGG | - | chr5_4:9561736-9561755 | Msa0836130:CDS | 35.0% |
| ! | TGCATTGATCTGGATTATTC+AGG | + | chr5_4:9561784-9561803 | None:intergenic | 35.0% |
| ! | GAATCTAATGTGCATTGATC+TGG | + | chr5_4:9561794-9561813 | None:intergenic | 35.0% |
| GATCAATGCACATTAGATTC+AGG | - | chr5_4:9561794-9561813 | Msa0836130:CDS | 35.0% | |
| ! | ATGTTTTCCACTGAAAAGCA+CGG | + | chr5_4:9561988-9562007 | None:intergenic | 35.0% |
| CGATATGTGTTACAGTATAC+TGG | - | chr5_4:9562039-9562058 | Msa0836130:CDS | 35.0% | |
| ATGTGTTACAGTATACTGGA+TGG | - | chr5_4:9562043-9562062 | Msa0836130:CDS | 35.0% | |
| AACTAACTACAGCCATGAAA+TGG | - | chr5_4:9562095-9562114 | Msa0836130:CDS | 35.0% | |
| GTGATCGATAATCCATTTCA+TGG | + | chr5_4:9562110-9562129 | None:intergenic | 35.0% | |
| AACAGATACGAGTCTATTTC+AGG | - | chr5_4:9562252-9562271 | Msa0836130:CDS | 35.0% | |
| TTGATCTTCAAGTCTTCTGT+TGG | + | chr5_4:9562332-9562351 | None:intergenic | 35.0% | |
| TTTATCTTCTCAGCACGAAA+AGG | - | chr5_4:9562618-9562637 | Msa0836130:intron | 35.0% | |
| TTATCTTCTCAGCACGAAAA+GGG | - | chr5_4:9562619-9562638 | Msa0836130:intron | 35.0% | |
| CGTTAATCAGAAAAATGAGC+CGG | - | chr5_4:9562658-9562677 | Msa0836130:CDS | 35.0% | |
| !! | CATCTGTTTTATTCCTTAGC+AGG | - | chr5_4:9562696-9562715 | Msa0836130:CDS | 35.0% |
| TGTTTGTTTACATATCCTGC+AGG | - | chr5_4:9562753-9562772 | Msa0836130:CDS | 35.0% | |
| TTTACATATCCTGCAGGAAT+GGG | - | chr5_4:9562759-9562778 | Msa0836130:CDS | 35.0% | |
| TGTTCCCTTAAAAGACATGA+AGG | - | chr5_4:9562942-9562961 | Msa0836130:intron | 35.0% | |
| !!! | GCTTAGTCGTCCATATTTTT+TGG | + | chr5_4:9563142-9563161 | None:intergenic | 35.0% |
| GTAGTTGAATACTTTCTGAG+AGG | - | chr5_4:9563245-9563264 | Msa0836130:intron | 35.0% | |
| ! | ATTTGTAATGGAGAGAAGTG+AGG | - | chr5_4:9563297-9563316 | Msa0836130:five_prime_UTR | 35.0% |
| ! | TTTGTAATGGAGAGAAGTGA+GGG | - | chr5_4:9563298-9563317 | Msa0836130:five_prime_UTR | 35.0% |
| !!! | CTGCATGCATATTTTGGTCA+AGG | + | chr5_4:9559960-9559979 | None:intergenic | 40.0% |
| ! | TCCTAATGGATCAAAAGCAG+TGG | - | chr5_4:9560006-9560025 | Msa0836130:CDS | 40.0% |
| ! | CCTAATGGATCAAAAGCAGT+GGG | - | chr5_4:9560007-9560026 | Msa0836130:CDS | 40.0% |
| ATTGTTCAAGAAGCAGTGTC+AGG | - | chr5_4:9560397-9560416 | Msa0836130:CDS | 40.0% | |
| CATGCCTATGACTATAGAAG+TGG | - | chr5_4:9560540-9560559 | Msa0836130:intron | 40.0% | |
| TTAGAGAGGAACAAGAGCAA+AGG | - | chr5_4:9560862-9560881 | Msa0836130:CDS | 40.0% | |
| ACAATTGAATCAAGCAGAGG+TGG | - | chr5_4:9561052-9561071 | Msa0836130:CDS | 40.0% | |
| AGTGATGACAATGTTAGCTG+CGG | - | chr5_4:9561332-9561351 | Msa0836130:CDS | 40.0% | |
| !! | CATTGATTTCAGAATCGGAG+CGG | - | chr5_4:9561372-9561391 | Msa0836130:CDS | 40.0% |
| GGATGTAGTTGAAGTCGTAT+TGG | - | chr5_4:9561691-9561710 | Msa0836130:CDS | 40.0% | |
| GAATTGTCGTTATCGTCAAC+AGG | + | chr5_4:9561950-9561969 | None:intergenic | 40.0% | |
| ! | TGAAAAGCACGGATCATGAA+GGG | + | chr5_4:9561977-9561996 | None:intergenic | 40.0% |
| ! | AGTGGAAAACATCCGATTTG+AGG | - | chr5_4:9561996-9562015 | Msa0836130:CDS | 40.0% |
| ! | GTGGAAAACATCCGATTTGA+GGG | - | chr5_4:9561997-9562016 | Msa0836130:CDS | 40.0% |
| CTGTAAGACATCCCTCAAAT+CGG | + | chr5_4:9562011-9562030 | None:intergenic | 40.0% | |
| TTACAGTATACTGGATGGCA+AGG | - | chr5_4:9562048-9562067 | Msa0836130:CDS | 40.0% | |
| !! | GCTTTGGGATGTTTCAAGTA+TGG | - | chr5_4:9562138-9562157 | Msa0836130:CDS | 40.0% |
| ! | TTGGGATGTTTCAAGTATGG+AGG | - | chr5_4:9562141-9562160 | Msa0836130:CDS | 40.0% |
| TTGCAACTCCGATCTTAAGT+TGG | + | chr5_4:9562296-9562315 | None:intergenic | 40.0% | |
| AACTTCAGCTTCAGCTTGAA+AGG | - | chr5_4:9562500-9562519 | Msa0836130:intron | 40.0% | |
| GATGAACTTACATTTCGCAC+CGG | + | chr5_4:9562680-9562699 | None:intergenic | 40.0% | |
| !! | GCAGGAAAATCTATTTCTGC+TGG | - | chr5_4:9562714-9562733 | Msa0836130:CDS | 40.0% |
| TCTGCTGGAATATTGTGTTG+AGG | - | chr5_4:9562729-9562748 | Msa0836130:CDS | 40.0% | |
| GTTTACATATCCTGCAGGAA+TGG | - | chr5_4:9562758-9562777 | Msa0836130:CDS | 40.0% | |
| TCAACTGCTTCTCAAGGTTA+AGG | + | chr5_4:9562831-9562850 | None:intergenic | 40.0% | |
| TAACCTTGAGAAGCAGTTGA+AGG | - | chr5_4:9562831-9562850 | Msa0836130:intron | 40.0% | |
| AGCAAGCATCTGATCCAATA+GGG | + | chr5_4:9562983-9563002 | None:intergenic | 40.0% | |
| !!! | AGTCGTCCATATTTTTTGGC+AGG | + | chr5_4:9563138-9563157 | None:intergenic | 40.0% |
| AATATGGACGACTAAGCTTG+TGG | - | chr5_4:9563145-9563164 | Msa0836130:intron | 40.0% | |
| AGCTTGTGGAAAAGGATGTT+AGG | - | chr5_4:9563159-9563178 | Msa0836130:intron | 40.0% | |
| GCTTGTGGAAAAGGATGTTA+GGG | - | chr5_4:9563160-9563179 | Msa0836130:intron | 40.0% | |
| ! | GTGTGTTTTTCTCTTCACTC+TGG | - | chr5_4:9563327-9563346 | Msa0836130:five_prime_UTR | 40.0% |
| TCTCTTCACTCTGGTGTATA+CGG | - | chr5_4:9563336-9563355 | Msa0836130:five_prime_UTR | 40.0% | |
| TTTCCTTGAACTCAGAGCGT+CGG | - | chr5_4:9559629-9559648 | Msa0836130:three_prime_UTR | 45.0% | |
| !! | CCCACTGCTTTTGATCCATT+AGG | + | chr5_4:9560010-9560029 | None:intergenic | 45.0% |
| GTCAATGAAGGAACATCTCG+AGG | - | chr5_4:9560752-9560771 | Msa0836130:CDS | 45.0% | |
| TCTCGAGGAATCTATACACC+AGG | - | chr5_4:9560767-9560786 | Msa0836130:CDS | 45.0% | |
| GTGCTCTCAAGGAATGTATG+CGG | - | chr5_4:9560826-9560845 | Msa0836130:CDS | 45.0% | |
| !!! | TCAAGCTCGCGTTGTTTTAG+AGG | - | chr5_4:9560923-9560942 | Msa0836130:CDS | 45.0% |
| !! | CTCCGATGCTACTTGGTTTT+TGG | + | chr5_4:9561252-9561271 | None:intergenic | 45.0% |
| GTGATGACAATGTTAGCTGC+GGG | - | chr5_4:9561333-9561352 | Msa0836130:CDS | 45.0% | |
| TGATGACAATGTTAGCTGCG+GGG | - | chr5_4:9561334-9561353 | Msa0836130:CDS | 45.0% | |
| TGAAATCAATGCAGAAGCCG+AGG | + | chr5_4:9561363-9561382 | None:intergenic | 45.0% | |
| GGAATTCGCTGCATCGAATT+CGG | - | chr5_4:9561619-9561638 | Msa0836130:CDS | 45.0% | |
| ACTACATCCTGAAACCAACC+AGG | + | chr5_4:9561680-9561699 | None:intergenic | 45.0% | |
| ! | CTGAAAAGCACGGATCATGA+AGG | + | chr5_4:9561978-9561997 | None:intergenic | 45.0% |
| ! | TCATGATCCGTGCTTTTCAG+TGG | - | chr5_4:9561978-9561997 | Msa0836130:CDS | 45.0% |
| !! | CATGGCTGTAGTTAGTTCTG+TGG | + | chr5_4:9562092-9562111 | None:intergenic | 45.0% |
| !! | TCGATCACTGCTTTTCGCTT+TGG | - | chr5_4:9562122-9562141 | Msa0836130:CDS | 45.0% |
| !! | CGATCACTGCTTTTCGCTTT+GGG | - | chr5_4:9562123-9562142 | Msa0836130:CDS | 45.0% |
| ATGGGAGATAACAGCTGCTT+CGG | - | chr5_4:9562777-9562796 | Msa0836130:CDS | 45.0% | |
| AACAGCTGCTTCGGAGAAAT+TGG | - | chr5_4:9562786-9562805 | Msa0836130:intron | 45.0% | |
| CTGCTTCTCAAGGTTAAGGA+TGG | + | chr5_4:9562827-9562846 | None:intergenic | 45.0% | |
| TTGCCTTCAACTGCTTCTCA+AGG | + | chr5_4:9562837-9562856 | None:intergenic | 45.0% | |
| AACTATAGGACGACGATGAG+CGG | + | chr5_4:9562902-9562921 | None:intergenic | 45.0% | |
| GAAAAATCGACCGTCCCTAT+TGG | - | chr5_4:9562966-9562985 | Msa0836130:CDS | 45.0% | |
| AGCATCTGATCCAATAGGGA+CGG | + | chr5_4:9562979-9562998 | None:intergenic | 45.0% | |
| CAGCAAGCATCTGATCCAAT+AGG | + | chr5_4:9562984-9563003 | None:intergenic | 45.0% | |
| GACGACTAAGCTTGTGGAAA+AGG | - | chr5_4:9563151-9563170 | Msa0836130:intron | 45.0% | |
| TGGATCAAAAGCAGTGGGAG+TGG | - | chr5_4:9560012-9560031 | Msa0836130:CDS | 50.0% | |
| GGATCAAAAGCAGTGGGAGT+GGG | - | chr5_4:9560013-9560032 | Msa0836130:CDS | 50.0% | |
| GATCAAAAGCAGTGGGAGTG+GGG | - | chr5_4:9560014-9560033 | Msa0836130:CDS | 50.0% | |
| ATCAAAAGCAGTGGGAGTGG+GGG | - | chr5_4:9560015-9560034 | Msa0836130:CDS | 50.0% | |
| GGAGTGGGGGAAAAAGACAA+GGG | - | chr5_4:9560028-9560047 | Msa0836130:CDS | 50.0% | |
| !! | GTTTTAGGTGCAGGCACTTC+TGG | - | chr5_4:9560267-9560286 | Msa0836130:CDS | 50.0% |
| CGAAGAAAGAGTCGCGCATT+TGG | - | chr5_4:9560800-9560819 | Msa0836130:CDS | 50.0% | |
| GCATTTGGATCGTGCTCTCA+AGG | - | chr5_4:9560815-9560834 | Msa0836130:CDS | 50.0% | |
| TGAGGCTCGAGTGCTTCAAA+AGG | - | chr5_4:9561136-9561155 | Msa0836130:CDS | 50.0% | |
| ! | ACGAAAAGGGCACGCTCAAA+TGG | - | chr5_4:9562632-9562651 | Msa0836130:intron | 50.0% |
| CTGTTATCTCCCATTCCTGC+AGG | + | chr5_4:9562771-9562790 | None:intergenic | 50.0% | |
| ! | TCACCGACGCTCTGAGTTCA+AGG | + | chr5_4:9559635-9559654 | None:intergenic | 55.0% |
| GGGAGTGGGGGAAAAAGACA+AGG | - | chr5_4:9560027-9560046 | Msa0836130:CDS | 55.0% | |
| TAGGCTGCTCCGATGCTACT+TGG | + | chr5_4:9561259-9561278 | None:intergenic | 55.0% | |
| TGTTAGCTGCGGGGAATCCT+CGG | - | chr5_4:9561343-9561362 | Msa0836130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9559610 | 9563461 | 9559610 | ID=Msa0836130;Name=Msa0836130 |
| chr5_4 | mRNA | 9559610 | 9563461 | 9559610 | ID=Msa0836130-mRNA-1;Parent=Msa0836130;Name=Msa0836130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=240|1|1|1|0.8|0.66|6|231|850 |
| chr5_4 | exon | 9559610 | 9560296 | 9559610 | ID=Msa0836130-mRNA-1:exon:4166;Parent=Msa0836130-mRNA-1 |
| chr5_4 | exon | 9560383 | 9560440 | 9560383 | ID=Msa0836130-mRNA-1:exon:4165;Parent=Msa0836130-mRNA-1 |
| chr5_4 | exon | 9560550 | 9562347 | 9560550 | ID=Msa0836130-mRNA-1:exon:4164;Parent=Msa0836130-mRNA-1 |
| chr5_4 | exon | 9562653 | 9562797 | 9562653 | ID=Msa0836130-mRNA-1:exon:4163;Parent=Msa0836130-mRNA-1 |
| chr5_4 | exon | 9562965 | 9563091 | 9562965 | ID=Msa0836130-mRNA-1:exon:4162;Parent=Msa0836130-mRNA-1 |
| chr5_4 | exon | 9563253 | 9563461 | 9563253 | ID=Msa0836130-mRNA-1:exon:4161;Parent=Msa0836130-mRNA-1 |
| chr5_4 | five_prime_UTR | 9563253 | 9563461 | 9563253 | ID=Msa0836130-mRNA-1:five_prime_utr;Parent=Msa0836130-mRNA-1 |
| chr5_4 | five_prime_UTR | 9563061 | 9563091 | 9563061 | ID=Msa0836130-mRNA-1:five_prime_utr;Parent=Msa0836130-mRNA-1 |
| chr5_4 | CDS | 9562965 | 9563060 | 9562965 | ID=Msa0836130-mRNA-1:cds;Parent=Msa0836130-mRNA-1 |
| chr5_4 | CDS | 9562653 | 9562797 | 9562653 | ID=Msa0836130-mRNA-1:cds;Parent=Msa0836130-mRNA-1 |
| chr5_4 | CDS | 9560550 | 9562347 | 9560550 | ID=Msa0836130-mRNA-1:cds;Parent=Msa0836130-mRNA-1 |
| chr5_4 | CDS | 9560383 | 9560440 | 9560383 | ID=Msa0836130-mRNA-1:cds;Parent=Msa0836130-mRNA-1 |
| chr5_4 | CDS | 9559841 | 9560296 | 9559841 | ID=Msa0836130-mRNA-1:cds;Parent=Msa0836130-mRNA-1 |
| chr5_4 | three_prime_UTR | 9559610 | 9559840 | 9559610 | ID=Msa0836130-mRNA-1:three_prime_utr;Parent=Msa0836130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
