AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429830 MtrunA17_Chr3g0137831 97.143 210 4 1 77 286 1 208 1.94e-152 424
Msa1429830 MtrunA17_Chr4g0063751 57.692 208 77 4 80 286 3 200 4.60e-71 218
Msa1429830 MtrunA17_Chr4g0003421 56.881 218 74 4 76 277 33 246 4.31e-69 214
Msa1429830 MtrunA17_Chr1g0149331 62.189 201 70 4 77 275 1 197 3.40e-68 210
Msa1429830 MtrunA17_Chr2g0333011 58.081 198 56 3 81 277 4 175 5.43e-66 204
Msa1429830 MtrunA17_Chr4g0002631 52.174 115 36 2 77 191 1 96 2.22e-28 107
Msa1429830 MtrunA17_Chr3g0137174 69.118 68 21 0 77 144 1 68 5.94e-28 106
Msa1429830 MtrunA17_Chr4g0017851 39.669 121 68 1 25 140 54 174 1.19e-22 95.1
Msa1429830 MtrunA17_Chr8g0375031 64.789 71 22 1 82 152 123 190 3.66e-22 92.0
Msa1429830 MtrunA17_Chr8g0383591 61.538 65 25 0 76 140 137 201 7.05e-21 90.5
Msa1429830 MtrunA17_Chr7g0221471 58.108 74 28 1 70 140 34 107 8.05e-21 87.4
Msa1429830 MtrunA17_Chr5g0432821 40.708 113 56 4 71 172 108 220 2.70e-20 88.2
Msa1429830 MtrunA17_Chr3g0134161 42.157 102 59 0 62 163 23 124 3.53e-20 85.5
Msa1429830 MtrunA17_Chr1g0196781 44.915 118 57 3 65 182 135 244 4.61e-20 88.2
Msa1429830 MtrunA17_Chr4g0044911 61.111 72 25 1 84 152 96 167 4.73e-20 86.7
Msa1429830 MtrunA17_Chr3g0099871 44.444 99 49 1 70 162 13 111 8.40e-20 85.9
Msa1429830 MtrunA17_Chr3g0126321 59.420 69 28 0 71 139 100 168 9.61e-20 87.8
Msa1429830 MtrunA17_Chr3g0115631 55.556 72 32 0 81 152 147 218 1.77e-19 87.0
Msa1429830 MtrunA17_Chr4g0044881 66.102 59 20 0 83 141 113 171 2.26e-19 85.1
Msa1429830 MtrunA17_Chr7g0221501 56.000 75 30 1 69 140 33 107 2.89e-19 83.2
Msa1429830 MtrunA17_Chr4g0044901 67.241 58 19 0 84 141 96 153 3.03e-19 84.3
Msa1429830 MtrunA17_Chr2g0316931 55.714 70 31 0 72 141 19 88 3.85e-19 83.6
Msa1429830 MtrunA17_Chr4g0044871 65.517 58 20 0 84 141 96 153 4.70e-19 84.0
Msa1429830 MtrunA17_Chr5g0396911 55.128 78 32 1 82 156 110 187 4.89e-19 85.1
Msa1429830 MtrunA17_Chr5g0425561 49.412 85 39 1 65 145 150 234 5.50e-19 85.9
Msa1429830 MtrunA17_Chr6g0486701 53.521 71 33 0 84 154 44 114 1.59e-18 82.0
Msa1429830 MtrunA17_Chr2g0282651 42.857 119 55 3 35 140 8 126 1.75e-18 82.8
Msa1429830 MtrunA17_Chr5g0438801 49.333 75 38 0 70 144 37 111 2.10e-18 83.2
Msa1429830 MtrunA17_Chr8g0387801 41.085 129 65 3 82 199 105 233 2.63e-18 83.2
Msa1429830 MtrunA17_Chr7g0232261 63.158 57 21 0 84 140 61 117 2.74e-18 82.0
Msa1429830 MtrunA17_Chr4g0055951 54.930 71 32 0 84 154 74 144 2.89e-18 82.4
Msa1429830 MtrunA17_Chr5g0438831 50.649 77 36 1 70 144 30 106 3.64e-18 82.4
Msa1429830 MtrunA17_Chr8g0340311 50.685 73 36 0 84 156 47 119 3.83e-18 80.9
Msa1429830 MtrunA17_Chr3g0140161 54.930 71 32 0 84 154 43 113 4.36e-18 80.1
Msa1429830 MtrunA17_Chr8g0390091 63.158 57 21 0 84 140 37 93 5.61e-18 80.9
Msa1429830 MtrunA17_Chr8g0382491 54.412 68 31 0 79 146 108 175 6.33e-18 81.6
Msa1429830 MtrunA17_Chr8g0344961 52.778 72 34 0 69 140 109 180 8.21e-18 82.4
Msa1429830 MtrunA17_Chr2g0324131 57.143 63 27 0 78 140 212 274 9.83e-18 82.8
Msa1429830 MtrunA17_Chr7g0217991 60.317 63 24 1 82 143 40 102 1.04e-17 82.8
Msa1429830 MtrunA17_Chr2g0331231 46.988 83 33 1 69 140 15 97 1.20e-17 79.3
Msa1429830 MtrunA17_Chr7g0275841 57.895 57 24 0 84 140 28 84 1.24e-17 78.6
Msa1429830 MtrunA17_Chr5g0399441 52.113 71 34 0 84 154 28 98 1.24e-17 79.0
Msa1429830 MtrunA17_Chr2g0295421 63.158 57 21 0 84 140 96 152 1.31e-17 80.5
Msa1429830 MtrunA17_Chr1g0195151 52.055 73 35 0 68 140 61 133 1.40e-17 81.3
Msa1429830 MtrunA17_Chr7g0253424 62.712 59 22 0 81 139 36 94 1.53e-17 80.5
Msa1429830 MtrunA17_Chr6g0453661 60.317 63 24 1 82 143 36 98 1.53e-17 82.0
Msa1429830 MtrunA17_Chr2g0334031 52.778 72 34 0 69 140 102 173 2.73e-17 80.9
Msa1429830 MtrunA17_Chr2g0323171 63.158 57 21 0 84 140 65 121 2.90e-17 78.2
Msa1429830 MtrunA17_Chr5g0437671 63.793 58 21 0 83 140 84 141 3.34e-17 80.9
Msa1429830 MtrunA17_Chr4g0062551 45.977 87 46 1 68 154 38 123 3.39e-17 76.6
Msa1429830 MtrunA17_Chr8g0346741 42.105 95 52 1 46 140 4 95 3.68e-17 77.4
Msa1429830 MtrunA17_Chr1g0158971 48.913 92 39 3 82 165 113 204 4.13e-17 80.1
Msa1429830 MtrunA17_Chr5g0437371 54.545 66 30 0 74 139 56 121 4.32e-17 80.1
Msa1429830 MtrunA17_Chr4g0055761 59.701 67 26 1 82 147 143 209 5.24e-17 79.0
Msa1429830 MtrunA17_Chr4g0023411 51.250 80 36 1 84 160 65 144 6.80e-17 77.0
Msa1429830 MtrunA17_Chr8g0334801 59.649 57 23 0 84 140 52 108 7.08e-17 77.4
Msa1429830 MtrunA17_Chr8g0367911 56.250 64 28 0 76 139 36 99 7.37e-17 79.0
Msa1429830 MtrunA17_Chr1g0150691 45.455 77 38 1 64 140 6 78 8.30e-17 77.4
Msa1429830 MtrunA17_Chr5g0401871 48.485 66 34 0 75 140 16 81 1.05e-16 76.3
Msa1429830 MtrunA17_Chr1g0153151 50.725 69 32 1 82 148 42 110 1.19e-16 76.3
Msa1429830 MtrunA17_Chr4g0062161 45.977 87 46 1 68 154 38 123 1.29e-16 76.6
Msa1429830 MtrunA17_Chr4g0066931 50.000 78 38 1 63 139 31 108 1.33e-16 78.6
Msa1429830 MtrunA17_Chr1g0150671 34.921 126 63 3 64 189 30 136 1.35e-16 78.2
Msa1429830 MtrunA17_Chr2g0282621 57.143 63 27 0 84 146 15 77 1.42e-16 75.9
Msa1429830 MtrunA17_Chr1g0150631 36.800 125 66 4 68 191 21 133 1.84e-16 76.6
Msa1429830 MtrunA17_Chr2g0301191 54.386 57 26 0 84 140 19 75 2.64e-16 75.9
Msa1429830 MtrunA17_Chr2g0286161 38.393 112 67 2 37 148 5 114 2.98e-16 77.4
Msa1429830 MtrunA17_Chr1g0150661 52.542 59 28 0 82 140 33 91 5.99e-16 75.1
Msa1429830 MtrunA17_Chr3g0136551 39.362 94 46 1 82 175 63 145 7.02e-16 75.9
Msa1429830 MtrunA17_Chr7g0265851 51.429 70 34 0 84 153 24 93 7.15e-16 74.7
Msa1429830 MtrunA17_Chr8g0378811 32.298 161 90 4 47 198 9 159 8.54e-16 75.5
Msa1429830 MtrunA17_Chr7g0257911 52.239 67 32 0 74 140 21 87 8.84e-16 75.9
Msa1429830 MtrunA17_Chr4g0055801 47.674 86 39 2 65 144 130 215 9.47e-16 75.9
Msa1429830 MtrunA17_Chr2g0301171 45.333 75 31 1 84 158 19 83 1.21e-15 73.9
Msa1429830 MtrunA17_Chr1g0170531 49.367 79 33 2 76 153 81 153 1.30e-15 74.3
Msa1429830 MtrunA17_Chr1g0184081 59.322 59 23 1 83 140 20 78 2.30e-15 71.6
Msa1429830 MtrunA17_Chr1g0186731 57.627 59 24 1 83 140 20 78 2.56e-15 71.6
Msa1429830 MtrunA17_Chr4g0055781 44.211 95 47 2 65 153 78 172 2.78e-15 73.9
Msa1429830 MtrunA17_Chr5g0412641 59.649 57 23 0 83 139 45 101 3.55e-15 74.7
Msa1429830 MtrunA17_Chr1g0196871 45.977 87 42 2 73 158 5 87 4.82e-15 69.7
Msa1429830 MtrunA17_Chr6g0461271 59.649 57 23 0 83 139 32 88 6.01e-15 73.6
Msa1429830 MtrunA17_Chr1g0203861 58.929 56 23 0 84 139 44 99 7.45e-15 71.6
Msa1429830 MtrunA17_Chr7g0252381 57.895 57 24 0 83 139 41 97 9.31e-15 72.8
Msa1429830 MtrunA17_Chr1g0189941 47.222 72 38 0 73 144 13 84 1.03e-14 70.5
Msa1429830 MtrunA17_Chr8g0335331 60.000 60 19 2 84 140 125 182 1.55e-14 70.9
Msa1429830 MtrunA17_Chr8g0350701 43.678 87 35 2 70 146 17 99 1.77e-14 72.4
Msa1429830 MtrunA17_Chr7g0261101 54.412 68 30 1 74 140 10 77 1.83e-14 69.3
Msa1429830 MtrunA17_Chr2g0283171 55.738 61 26 1 82 141 61 121 1.89e-14 69.7
Msa1429830 MtrunA17_Chr4g0046161 48.684 76 33 2 71 140 39 114 1.91e-14 68.6
Msa1429830 MtrunA17_Chr2g0301181 47.761 67 32 1 84 150 19 82 1.93e-14 71.2
Msa1429830 MtrunA17_Chr7g0243431 57.143 63 20 1 84 139 78 140 1.97e-14 73.2
Msa1429830 MtrunA17_Chr7g0261151 61.017 59 22 1 83 140 19 77 2.21e-14 68.9
Msa1429830 MtrunA17_Chr2g0283181 55.738 61 26 1 82 141 147 207 2.47e-14 71.6
Msa1429830 MtrunA17_Chr4g0026881 60.345 58 22 1 84 140 97 154 2.50e-14 70.9
Msa1429830 MtrunA17_Chr7g0250711 56.667 60 25 1 82 140 58 117 2.91e-14 70.1
Msa1429830 MtrunA17_Chr8g0335311 55.000 60 26 1 82 140 94 153 3.03e-14 70.1
Msa1429830 MtrunA17_Chr5g0396301 55.738 61 25 1 82 140 16 76 3.78e-14 68.9
Msa1429830 MtrunA17_Chr7g0250731 49.296 71 35 1 71 140 48 118 4.41e-14 69.7
Msa1429830 MtrunA17_Chr8g0335321 50.000 64 31 1 78 140 90 153 4.74e-14 69.7
Msa1429830 MtrunA17_Chr1g0184071 46.914 81 36 2 64 143 55 129 6.25e-14 68.6
Msa1429830 MtrunA17_Chr4g0042761 53.448 58 27 0 82 139 46 103 6.91e-14 70.9
Msa1429830 MtrunA17_Chr3g0136541 38.889 90 44 1 86 175 42 120 7.02e-14 69.7
Msa1429830 MtrunA17_Chr1g0186671 57.627 59 24 1 83 140 18 76 7.13e-14 67.4
Msa1429830 MtrunA17_Chr7g0250721 49.296 71 35 1 71 140 48 118 7.37e-14 68.9
Msa1429830 MtrunA17_Chr6g0473981 47.297 74 36 1 69 139 36 109 8.55e-14 69.7
Msa1429830 MtrunA17_Chr2g0297331 52.381 63 29 1 79 140 9 71 1.04e-13 67.0
Msa1429830 MtrunA17_Chr6g0473931 55.932 59 26 0 84 142 33 91 1.38e-13 68.2
Msa1429830 MtrunA17_Chr1g0184031 50.746 67 32 1 78 143 78 144 1.57e-13 68.6
Msa1429830 MtrunA17_Chr5g0438841 43.038 79 45 0 83 161 15 93 1.94e-13 67.0
Msa1429830 MtrunA17_Chr6g0486711 54.795 73 33 0 84 156 49 121 1.99e-13 68.2
Msa1429830 MtrunA17_Chr6g0473961 45.946 74 37 1 69 139 36 109 2.17e-13 67.8
Msa1429830 MtrunA17_Chr1g0184011 49.275 69 34 1 76 143 76 144 2.31e-13 68.2
Msa1429830 MtrunA17_Chr1g0200931 50.000 62 30 1 79 139 18 79 2.35e-13 66.2
Msa1429830 MtrunA17_Chr6g0473941 54.237 59 27 0 84 142 33 91 2.89e-13 67.4
Msa1429830 MtrunA17_Chr1g0146191 64.912 57 20 0 84 140 47 103 2.93e-13 68.2
Msa1429830 MtrunA17_Chr1g0184061 55.932 59 25 1 82 139 75 133 3.07e-13 67.4
Msa1429830 MtrunA17_Chr1g0183981 52.381 63 29 1 82 143 73 135 3.73e-13 67.4
Msa1429830 MtrunA17_Chr4g0057241 46.479 71 37 1 84 154 15 84 3.95e-13 66.2
Msa1429830 MtrunA17_Chr6g0473741 50.000 62 31 0 84 145 66 127 4.37e-13 67.4
Msa1429830 MtrunA17_Chr6g0473861 55.357 56 25 0 84 139 63 118 5.31e-13 67.8
Msa1429830 MtrunA17_Chr6g0473971 53.571 56 26 0 84 139 54 109 5.80e-13 67.0
Msa1429830 MtrunA17_Chr5g0396191 59.016 61 25 0 84 144 11 71 6.27e-13 65.9
Msa1429830 MtrunA17_Chr6g0473881 53.571 56 26 0 84 139 110 165 8.60e-13 67.4
Msa1429830 MtrunA17_Chr4g0026931 52.857 70 30 2 84 150 131 200 1.03e-12 67.0
Msa1429830 MtrunA17_Chr3g0129421 60.563 71 25 1 73 140 156 226 1.04e-12 67.4
Msa1429830 MtrunA17_Chr6g0474001 53.571 56 26 0 84 139 54 109 1.10e-12 66.6
Msa1429830 MtrunA17_Chr7g0225131 42.857 77 37 2 64 140 13 82 1.21e-12 62.8
Msa1429830 MtrunA17_Chr6g0473781 53.571 56 26 0 84 139 57 112 1.73e-12 65.5
Msa1429830 MtrunA17_Chr5g0424051 38.125 160 66 6 9 141 1 154 1.84e-12 66.2
Msa1429830 MtrunA17_Chr1g0186681 55.000 60 25 1 83 140 18 77 3.05e-12 62.8
Msa1429830 MtrunA17_Chr1g0205961 46.667 60 30 1 79 136 110 169 5.43e-12 65.5
Msa1429830 MtrunA17_Chr3g0131601 58.571 70 27 1 71 140 65 132 1.38e-11 63.5
Msa1429830 MtrunA17_Chr3g0114761 50.649 77 36 1 68 142 9 85 1.92e-11 62.4
Msa1429830 MtrunA17_Chr3g0142081 46.429 84 41 1 74 153 29 112 2.87e-11 62.0
Msa1429830 MtrunA17_Chr6g0473771 38.272 81 45 1 64 139 18 98 4.10e-11 59.3
Msa1429830 MtrunA17_Chr8g0345531 36.585 82 41 1 54 124 75 156 4.20e-11 62.8
Msa1429830 MtrunA17_Chr5g0398081 48.387 62 26 1 84 139 49 110 8.19e-11 60.8
Msa1429830 MtrunA17_Chr2g0321071 39.785 93 47 3 84 167 47 139 9.30e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429830 AT5G25390.2 60.804 199 57 3 81 279 4 181 4.30e-76 230
Msa1429830 AT5G25390.1 58.794 199 58 4 81 279 4 178 1.31e-71 219
Msa1429830 AT1G15360.1 59.596 198 79 1 80 277 3 199 5.86e-70 215
Msa1429830 AT1G15360.2 59.596 198 79 1 80 277 3 199 5.86e-70 215
Msa1429830 AT5G11190.1 58.586 198 69 3 81 277 4 189 2.23e-67 208
Msa1429830 AT5G25190.1 40.000 200 87 6 77 276 1 167 7.81e-29 108
Msa1429830 AT1G36060.1 41.880 117 64 2 38 153 99 212 1.12e-22 95.9
Msa1429830 AT5G53290.1 57.895 76 29 1 69 141 107 182 1.36e-20 90.5
Msa1429830 AT2G35700.1 62.500 64 24 0 77 140 38 101 1.38e-20 87.4
Msa1429830 AT4G13620.1 54.023 87 34 2 65 145 207 293 5.54e-20 89.4
Msa1429830 AT4G16750.1 61.905 63 24 0 78 140 34 96 6.83e-20 85.1
Msa1429830 AT2G22200.1 58.333 72 26 1 73 140 56 127 7.84e-20 87.0
Msa1429830 AT4G27950.1 61.905 63 24 0 79 141 113 175 1.51e-19 87.4
Msa1429830 AT1G03800.1 54.054 74 32 1 83 156 52 123 1.53e-19 85.9
Msa1429830 AT1G78080.1 42.342 111 51 1 75 185 143 240 1.92e-19 87.0
Msa1429830 AT4G39780.1 48.485 99 43 2 63 159 70 162 2.03e-19 85.9
Msa1429830 AT2G47520.1 57.746 71 28 1 84 154 50 118 2.10e-19 83.6
Msa1429830 AT5G65130.2 60.606 66 26 0 81 146 110 175 2.24e-19 86.3
Msa1429830 AT5G65130.1 60.606 66 26 0 81 146 108 173 2.31e-19 85.9
Msa1429830 AT4G06746.1 43.529 85 42 1 68 152 20 98 2.68e-19 82.8
Msa1429830 AT2G23340.1 46.067 89 42 1 75 163 19 101 2.78e-19 83.6
Msa1429830 AT4G28140.1 63.333 60 22 0 81 140 140 199 3.39e-19 85.9
Msa1429830 AT4G23750.2 58.209 67 28 0 82 148 120 186 4.96e-19 85.9
Msa1429830 AT4G23750.1 58.209 67 28 0 82 148 120 186 4.96e-19 85.9
Msa1429830 AT5G61890.1 62.712 59 22 0 82 140 88 146 6.20e-19 84.3
Msa1429830 AT1G28370.1 62.069 58 22 0 83 140 19 76 6.25e-19 82.4
Msa1429830 AT4G11140.1 62.712 59 22 0 82 140 85 143 8.35e-19 84.7
Msa1429830 AT5G13330.1 57.143 70 23 1 71 140 33 95 1.05e-18 82.8
Msa1429830 AT3G16280.1 51.948 77 37 0 80 156 57 133 1.06e-18 83.6
Msa1429830 AT5G47220.1 50.562 89 39 2 64 147 93 181 1.20e-18 83.6
Msa1429830 AT1G71450.1 52.564 78 30 1 84 161 24 94 1.29e-18 82.0
Msa1429830 AT1G21910.1 59.016 61 25 0 84 144 50 110 1.36e-18 82.8
Msa1429830 AT1G28370.2 62.069 58 22 0 83 140 57 114 1.39e-18 82.4
Msa1429830 AT3G16280.2 53.425 73 34 0 84 156 79 151 1.57e-18 83.2
Msa1429830 AT5G44210.1 65.517 58 20 0 84 141 33 90 1.57e-18 82.0
Msa1429830 AT1G22190.1 52.778 72 34 0 76 147 75 146 1.73e-18 83.2
Msa1429830 AT1G50640.1 62.712 59 22 0 83 141 27 85 2.17e-18 82.4
Msa1429830 AT2G46310.1 55.385 65 29 0 75 139 90 154 2.25e-18 83.6
Msa1429830 AT3G11020.1 64.407 59 21 0 84 142 78 136 3.02e-18 83.6
Msa1429830 AT2G20880.1 60.000 60 24 0 81 140 184 243 3.57e-18 83.6
Msa1429830 AT4G31060.1 46.154 78 42 0 67 144 10 87 4.47e-18 80.5
Msa1429830 AT3G15210.1 62.712 59 22 0 83 141 24 82 4.92e-18 81.3
Msa1429830 AT3G20310.1 56.716 67 28 1 75 141 19 84 5.50e-18 81.6
Msa1429830 AT4G32800.1 63.158 57 21 0 84 140 19 75 6.22e-18 80.9
Msa1429830 AT2G33710.1 61.017 59 23 0 82 140 68 126 6.38e-18 80.9
Msa1429830 AT2G44940.1 55.882 68 30 0 73 140 89 156 6.40e-18 82.4
Msa1429830 AT2G33710.2 61.017 59 23 0 82 140 68 126 7.30e-18 80.9
Msa1429830 AT4G36900.1 51.613 62 30 0 79 140 25 86 8.03e-18 80.1
Msa1429830 AT2G25820.1 63.158 57 21 0 84 140 26 82 8.70e-18 80.5
Msa1429830 AT3G60490.1 54.930 71 29 1 73 140 57 127 1.11e-17 80.9
Msa1429830 AT1G22985.1 59.701 67 24 1 76 139 67 133 1.31e-17 78.6
Msa1429830 AT5G43410.1 58.824 68 27 1 83 149 14 81 1.61e-17 77.4
Msa1429830 AT1G46768.3 52.308 65 31 0 76 140 23 87 2.41e-17 77.4
Msa1429830 AT1G46768.1 52.308 65 31 0 76 140 23 87 2.46e-17 77.8
Msa1429830 AT1G46768.2 52.308 65 31 0 76 140 23 87 2.46e-17 77.8
Msa1429830 AT1G72360.1 54.839 62 28 0 79 140 20 81 2.61e-17 79.0
Msa1429830 AT1G19210.1 49.254 67 34 0 74 140 2 68 2.98e-17 78.2
Msa1429830 AT5G11590.1 52.941 68 32 0 73 140 40 107 3.71e-17 79.3
Msa1429830 AT1G72360.3 54.839 62 28 0 79 140 69 130 3.77e-17 79.7
Msa1429830 AT1G72360.2 54.839 62 28 0 79 140 71 132 4.04e-17 79.7
Msa1429830 AT5G25810.1 61.404 57 22 0 84 140 36 92 4.06e-17 78.6
Msa1429830 AT3G50260.1 49.206 63 32 0 78 140 15 77 4.15e-17 77.0
Msa1429830 AT4G17500.1 59.701 67 26 1 82 147 146 212 4.86e-17 79.3
Msa1429830 AT2G40340.2 31.132 212 107 5 84 281 14 200 5.76e-17 79.3
Msa1429830 AT2G40340.5 31.132 212 107 5 84 281 14 200 5.76e-17 79.3
Msa1429830 AT2G40340.4 31.132 212 107 5 84 281 14 200 5.76e-17 79.3
Msa1429830 AT1G74930.1 46.575 73 38 1 68 140 6 77 6.07e-17 77.8
Msa1429830 AT5G05410.2 62.712 59 22 0 84 142 79 137 9.78e-17 79.0
Msa1429830 AT5G19790.1 59.091 66 23 1 74 139 16 77 1.06e-16 78.2
Msa1429830 AT2G40340.6 31.250 208 104 5 84 277 79 261 1.14e-16 79.3
Msa1429830 AT3G61630.1 62.069 58 22 0 82 139 103 160 1.14e-16 79.0
Msa1429830 AT1G28160.1 46.316 95 38 2 83 177 38 119 1.15e-16 77.8
Msa1429830 AT5G05410.1 62.712 59 22 0 84 142 79 137 1.28e-16 79.0
Msa1429830 AT5G67190.1 48.387 62 32 0 79 140 16 77 1.53e-16 76.3
Msa1429830 AT1G01250.1 56.140 57 25 0 84 140 45 101 1.55e-16 76.6
Msa1429830 AT1G28360.1 61.404 57 22 0 84 140 12 68 1.99e-16 76.3
Msa1429830 AT4G25490.1 62.500 56 21 0 84 139 48 103 2.02e-16 76.6
Msa1429830 AT2G40340.1 31.250 208 104 5 84 277 72 254 2.56e-16 78.2
Msa1429830 AT5G13910.1 51.389 72 35 0 68 139 4 75 2.69e-16 76.3
Msa1429830 AT1G24590.1 61.017 59 23 0 81 139 55 113 3.03e-16 77.8
Msa1429830 AT4G25470.1 61.017 59 23 0 84 142 51 109 3.59e-16 75.9
Msa1429830 AT5G21960.1 49.206 63 32 0 78 140 1 63 3.86e-16 75.9
Msa1429830 AT3G57600.1 52.239 67 32 0 74 140 18 84 4.25e-16 77.0
Msa1429830 AT2G40340.3 48.649 74 38 0 84 157 72 145 4.32e-16 77.0
Msa1429830 AT5G18560.1 52.174 69 31 1 73 139 42 110 5.83e-16 77.4
Msa1429830 AT1G12980.1 57.627 59 25 0 81 139 54 112 7.06e-16 77.0
Msa1429830 AT3G16770.1 59.649 57 23 0 84 140 79 135 1.01e-15 75.5
Msa1429830 AT1G12890.1 52.174 69 33 0 80 148 17 85 2.23e-15 73.9
Msa1429830 AT3G23230.1 59.322 59 23 1 83 140 19 77 2.36e-15 72.0
Msa1429830 AT4G25480.1 57.627 59 25 0 84 142 51 109 2.51e-15 73.6
Msa1429830 AT5G47230.1 50.000 76 35 2 69 141 139 214 4.54e-15 74.3
Msa1429830 AT5G18450.1 54.545 66 30 0 74 139 24 89 7.14e-15 73.9
Msa1429830 AT5G51190.1 45.679 81 41 2 72 149 58 138 8.77e-15 72.4
Msa1429830 AT2G31230.1 40.404 99 58 1 44 141 46 144 8.90e-15 72.8
Msa1429830 AT5G51990.1 58.929 56 23 0 84 139 54 109 9.29e-15 72.4
Msa1429830 AT4G17490.1 46.053 76 40 1 78 152 131 206 1.84e-14 72.4
Msa1429830 AT2G44840.1 53.968 63 28 1 79 140 87 149 1.90e-14 71.2
Msa1429830 AT1G63030.2 41.975 81 42 2 64 139 5 85 2.11e-14 70.5
Msa1429830 AT1G63030.1 41.975 81 42 2 64 139 5 85 2.11e-14 70.5
Msa1429830 AT3G23240.1 55.385 65 28 1 82 145 80 144 2.65e-14 70.9
Msa1429830 AT1G75490.1 49.275 69 35 0 74 142 32 100 2.90e-14 70.5
Msa1429830 AT5G07580.1 45.570 79 37 2 81 158 107 180 4.56e-14 70.1
Msa1429830 AT1G71130.1 57.143 63 22 1 82 139 77 139 5.37e-14 68.9
Msa1429830 AT2G40350.1 51.724 58 28 0 84 141 67 124 5.57e-14 68.6
Msa1429830 AT2G40350.2 51.724 58 28 0 84 141 74 131 5.83e-14 68.6
Msa1429830 AT5G61600.1 31.579 152 98 2 1 151 10 156 6.72e-14 70.1
Msa1429830 AT2G36450.1 56.667 60 25 1 84 142 15 74 6.87e-14 68.9
Msa1429830 AT5G64750.1 60.000 50 20 0 91 140 192 241 1.33e-13 70.9
Msa1429830 AT4G18450.1 50.000 74 35 2 68 139 94 167 2.08e-13 69.7
Msa1429830 AT1G68550.1 42.857 77 40 1 82 154 111 187 3.18e-13 69.3
Msa1429830 AT1G68550.2 42.857 77 40 1 82 154 111 187 3.18e-13 69.3
Msa1429830 AT2G38340.1 45.161 93 43 1 74 158 60 152 3.48e-13 68.2
Msa1429830 AT5G07310.1 64.407 59 21 0 82 140 90 148 3.88e-13 68.2
Msa1429830 AT1G12610.1 50.000 56 28 0 84 139 30 85 3.97e-13 67.4
Msa1429830 AT1G43160.1 65.079 63 22 0 78 140 55 117 4.81e-13 67.0
Msa1429830 AT1G77200.1 51.948 77 37 0 78 154 37 113 6.57e-13 67.4
Msa1429830 AT1G71520.1 48.387 62 28 1 83 140 13 74 1.26e-12 64.7
Msa1429830 AT1G22810.1 45.312 64 33 1 79 140 9 72 1.38e-12 64.3
Msa1429830 AT3G25890.1 53.704 54 25 0 70 123 117 170 1.43e-12 67.4
Msa1429830 AT3G25890.2 53.704 54 25 0 70 123 117 170 1.43e-12 67.4
Msa1429830 AT4G34410.1 66.667 57 19 0 84 140 136 192 1.40e-11 63.9
Msa1429830 AT1G77640.1 42.708 96 46 2 80 175 39 125 1.56e-11 63.5
Msa1429830 AT5G50080.1 61.290 62 24 0 79 140 72 133 1.65e-11 63.2
Msa1429830 AT5G50080.2 61.290 62 24 0 79 140 81 142 1.70e-11 63.2
Msa1429830 AT3G14230.1 45.161 93 51 0 52 144 96 188 1.73e-11 64.3
Msa1429830 AT1G64380.1 44.144 111 50 2 75 185 127 225 2.50e-11 63.9
Msa1429830 AT3G14230.3 52.703 74 35 0 71 144 110 183 4.04e-11 63.2
Msa1429830 AT3G14230.2 52.703 74 35 0 71 144 111 184 4.13e-11 63.2
Msa1429830 AT5G67180.2 44.872 78 42 1 81 157 186 263 4.34e-11 62.8
Msa1429830 AT1G53910.1 45.679 81 44 0 60 140 101 181 5.26e-11 62.8
Msa1429830 AT1G53910.2 45.679 81 44 0 60 140 101 181 5.26e-11 62.8
Msa1429830 AT1G53910.3 45.679 81 44 0 60 140 99 179 5.63e-11 62.8
Msa1429830 AT5G67000.1 47.541 61 32 0 78 138 115 175 6.30e-11 60.8
Msa1429830 AT1G44830.1 63.333 60 21 1 82 140 33 92 8.55e-11 60.8
Msa1429830 AT1G53170.1 61.017 59 23 0 83 141 30 88 9.75e-11 60.1

Find 88 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTAAATTTATTTATAT+TGG 0.148646 tig0026572:+16362 None:intergenic
GACCACATTCTGATTCTAAT+TGG 0.168182 tig0026572:-15701 Msa1429830:CDS
CTACCACTACCACCATTATA+AGG 0.252274 tig0026572:+15873 None:intergenic
GGTTGGGAAACATGAGAATT+AGG 0.285190 tig0026572:-15265 Msa1429830:three_prime_UTR
TTGCTAAATTTATTTATATT+GGG 0.294546 tig0026572:+16363 None:intergenic
ACTATTGATGGTGGTAATAA+TGG 0.301168 tig0026572:-15609 Msa1429830:CDS
CTCCATCACTTACTTGTTTG+AGG 0.311570 tig0026572:-15770 Msa1429830:CDS
TGATTGAAGAGTTACTTAAT+TGG 0.312912 tig0026572:-15527 Msa1429830:CDS
CTCATCAGCAGGAAGAAAAT+AGG 0.314486 tig0026572:-15469 Msa1429830:three_prime_UTR
CATATTTCCTTTCCTTGGTT+GGG 0.318833 tig0026572:+16251 None:intergenic
GGCAGCGCCAGTGGGGCTCT+TGG 0.319895 tig0026572:-16197 Msa1429830:CDS
CCATATTTCCTTTCCTTGGT+TGG 0.341324 tig0026572:+16250 None:intergenic
CCAACCAAGGAAAGGAAATA+TGG 0.351898 tig0026572:-16250 Msa1429830:CDS
TGTACCATATTTCCTTTCCT+TGG 0.363966 tig0026572:+16246 None:intergenic
GCAGCGCCAGTGGGGCTCTT+GGG 0.372367 tig0026572:-16196 Msa1429830:CDS
TACCACTACCACCATTATAA+GGG 0.385987 tig0026572:+15874 None:intergenic
GTAATGCTGATAATGAAAAT+AGG 0.388971 tig0026572:-15587 Msa1429830:CDS
TTAGGATCAAATTAAGAAGA+AGG 0.406469 tig0026572:-15247 Msa1429830:three_prime_UTR
AAATTAAGAAGAAGGATTGT+TGG 0.411897 tig0026572:-15239 Msa1429830:three_prime_UTR
GCTAGTGACACCCCTTATAA+TGG 0.412119 tig0026572:-15885 Msa1429830:CDS
ATTTATTTATATTGGGTTGT+CGG 0.422132 tig0026572:+16370 None:intergenic
AGTAGCTCAGAGAGTGCCTT+GGG 0.425168 tig0026572:+15828 None:intergenic
GTTAATTAATAAGTTAGCTA+TGG 0.435206 tig0026572:-16478 Msa1429830:exon
ACTATAGAGTCAGAAGAGAT+AGG 0.438321 tig0026572:-15645 Msa1429830:CDS
ACCACATTCTGATTCTAATT+GGG 0.444505 tig0026572:-15700 Msa1429830:CDS
TCAAAACAACACACTATTGA+TGG 0.448013 tig0026572:-15621 Msa1429830:CDS
TGAAATAAATGAGGTGTAGC+AGG 0.450961 tig0026572:+16504 None:intergenic
TCACCTTGATTCTTTGACAC+AGG 0.455520 tig0026572:+15915 None:intergenic
GAGGAGTCAGGCAGCGCCAG+TGG 0.460267 tig0026572:-16206 Msa1429830:CDS
CACCTTGATTCTTTGACACA+GGG 0.476105 tig0026572:+15916 None:intergenic
TGATTCTTTCTTGTCTCCCA+AGG 0.481277 tig0026572:-15844 Msa1429830:CDS
GTATGCAATATATTGTGGTT+GGG 0.496364 tig0026572:-15281 Msa1429830:three_prime_UTR
CAAAGAAGTTCAGAGGAGTC+AGG 0.498039 tig0026572:-16218 Msa1429830:CDS
AGTAATTAACTCTCATCAGC+AGG 0.500299 tig0026572:-15480 Msa1429830:exon
TAAATGAGGTGTAGCAGGTA+GGG 0.500572 tig0026572:+16509 None:intergenic
AGAAAGAGAAGGGTGTGGTT+AGG 0.501728 tig0026572:-16023 Msa1429830:CDS
AGGAGTCAGGCAGCGCCAGT+GGG 0.506725 tig0026572:-16205 Msa1429830:CDS
CTGATTCTAATTGGGTCATG+AGG 0.507349 tig0026572:-15692 Msa1429830:CDS
AGTATGCAATATATTGTGGT+TGG 0.507407 tig0026572:-15282 Msa1429830:three_prime_UTR
AATAGGAATATTTCATGTCA+TGG 0.508893 tig0026572:-15452 Msa1429830:three_prime_UTR
CTGACACCCAAGAGCCCCAC+TGG 0.511591 tig0026572:+16190 None:intergenic
TAGGTTGGTAGTAGAAGAAG+AGG 0.515176 tig0026572:-15568 Msa1429830:CDS
ACCCCTTATAATGGTGGTAG+TGG 0.519879 tig0026572:-15876 Msa1429830:CDS
ATTAATGTTGCAGAAAGAGA+AGG 0.522866 tig0026572:-16034 Msa1429830:intron
TTCCCTGTGTCAAAGAATCA+AGG 0.525210 tig0026572:-15918 Msa1429830:CDS
TGCTGATAATGAAAATAGGT+TGG 0.525975 tig0026572:-15583 Msa1429830:CDS
AATGAGGGAATTACAACAAA+GGG 0.528956 tig0026572:+16157 None:intergenic
TTAATGTTGCAGAAAGAGAA+GGG 0.538276 tig0026572:-16033 Msa1429830:intron
ATAGCAGAAAATGGCATGCA+TGG 0.545331 tig0026572:+15403 None:intergenic
TGGGTCATGAGGGTTGAACT+TGG 0.546099 tig0026572:-15681 Msa1429830:CDS
GAGTAGCTCAGAGAGTGCCT+TGG 0.546798 tig0026572:+15827 None:intergenic
TATGAGCATAGGACGAAAAG+TGG 0.547238 tig0026572:+16401 None:intergenic
TTTATATTGGGTTGTCGGTG+TGG 0.549088 tig0026572:+16375 None:intergenic
TATAATGGTGGTAGTGGTAG+TGG 0.550731 tig0026572:-15870 Msa1429830:CDS
GTCATGAGGGTTGAACTTGG+TGG 0.552880 tig0026572:-15678 Msa1429830:CDS
TCTAGGCTTGACTATAGAGT+TGG 0.553027 tig0026572:+16597 None:intergenic
ATTAATTCCCAACCAAGGAA+AGG 0.553724 tig0026572:-16258 Msa1429830:CDS
AAAGTTGTGATCCACTCTCT+AGG 0.556450 tig0026572:+16580 None:intergenic
TGATTCTAATTGGGTCATGA+GGG 0.557657 tig0026572:-15691 Msa1429830:CDS
AGCCTCAAACAAGTAAGTGA+TGG 0.562083 tig0026572:+15768 None:intergenic
ATAAATGAGGTGTAGCAGGT+AGG 0.564369 tig0026572:+16508 None:intergenic
TAATAAAGCTTATATTTCTG+AGG 0.565553 tig0026572:+16277 None:intergenic
GATAATGATAATTCTCACAT+TGG 0.568198 tig0026572:-15744 Msa1429830:CDS
ATACAGTATGCAATATATTG+TGG 0.570765 tig0026572:-15286 Msa1429830:three_prime_UTR
ATTAACTACTGAAATAAATG+AGG 0.577618 tig0026572:+16495 None:intergenic
AACAAGTAAGTGATGGAGAA+GGG 0.581544 tig0026572:+15775 None:intergenic
TCATGAGGGTTGAACTTGGT+GGG 0.586410 tig0026572:-15677 Msa1429830:CDS
AAACAAGTAAGTGATGGAGA+AGG 0.587309 tig0026572:+15774 None:intergenic
CGGTGTGGAAATATGAGCAT+AGG 0.587987 tig0026572:+16390 None:intergenic
TGTATGTTGATGTGAGTAAG+TGG 0.602784 tig0026572:+16335 None:intergenic
GTTGCAGAAAGAGAAGGGTG+TGG 0.608205 tig0026572:-16028 Msa1429830:intron
GCTTTATTAATTCCCAACCA+AGG 0.608474 tig0026572:-16263 Msa1429830:CDS
CAACAAACAAAGAAGTTCAG+AGG 0.612284 tig0026572:-16225 Msa1429830:CDS
TTACTTGAAGTTGATCCACA+TGG 0.613395 tig0026572:+15498 None:intergenic
AATATTTCATGTCATGGACA+TGG 0.619424 tig0026572:-15446 Msa1429830:three_prime_UTR
ATGAGCATAGGACGAAAAGT+GGG 0.631292 tig0026572:+16402 None:intergenic
AGGAACATTTGAGACAGCAG+AGG 0.634183 tig0026572:-16003 Msa1429830:CDS
ACCACTACCACCATTATAAG+GGG 0.634975 tig0026572:+15875 None:intergenic
AAATGAGGGAATTACAACAA+AGG 0.637685 tig0026572:+16156 None:intergenic
AAACAACACACTATTGATGG+TGG 0.638087 tig0026572:-15618 Msa1429830:CDS
CTATAGTCAAGCCTAGAGAG+TGG 0.639461 tig0026572:-16591 Msa1429830:five_prime_UTR
GTATTAAGTAACTATCAAAG+TGG 0.643311 tig0026572:+15305 None:intergenic
GGAGTCAGGCAGCGCCAGTG+GGG 0.645187 tig0026572:-16204 Msa1429830:CDS
ATAATTCTCACATTGGAGTG+TGG 0.651598 tig0026572:-15737 Msa1429830:CDS
GAGGGAATTACAACAAAGGG+TGG 0.653367 tig0026572:+16160 None:intergenic
CTTAATTGGAACTATCCATG+TGG 0.667569 tig0026572:-15513 Msa1429830:CDS
AGTGACACCCCTTATAATGG+TGG 0.678747 tig0026572:-15882 Msa1429830:CDS
ACCCAATTAGAATCAGAATG+TGG 0.683688 tig0026572:+15699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGCTAAATTTATTTATATT+GGG + tig0026572:15436-15455 None:intergenic 10.0%
!! ATTGCTAAATTTATTTATAT+TGG + tig0026572:15437-15456 None:intergenic 10.0%
!! TTGCTAAATTTATTTATATT+GGG + tig0026572:15436-15455 None:intergenic 10.0%
!! ATTGCTAAATTTATTTATAT+TGG + tig0026572:15437-15456 None:intergenic 10.0%
!! CATAATATAATATAAGATGT+AGG + tig0026572:15697-15716 None:intergenic 15.0%
!! ATAAAGCAATTTATTAATTC+CGG - tig0026572:16599-16618 Msa1429830:five_prime_UTR 15.0%
!! CATAATATAATATAAGATGT+AGG + tig0026572:15697-15716 None:intergenic 15.0%
!! ATTAACTACTGAAATAAATG+AGG + tig0026572:15304-15323 None:intergenic 20.0%
!! GTTAATTAATAAGTTAGCTA+TGG - tig0026572:15318-15337 Msa1429830:three_prime_UTR 20.0%
!!! ATTTATTTATATTGGGTTGT+CGG + tig0026572:15429-15448 None:intergenic 20.0%
!!! TAATAAAGCTTATATTTCTG+AGG + tig0026572:15522-15541 None:intergenic 20.0%
!! ATTGATATAGAGTTAAATGA+GGG + tig0026572:15657-15676 None:intergenic 20.0%
!! ATTAACTACTGAAATAAATG+AGG + tig0026572:15304-15323 None:intergenic 20.0%
!! GTTAATTAATAAGTTAGCTA+TGG - tig0026572:15318-15337 Msa1429830:three_prime_UTR 20.0%
!!! ATTTATTTATATTGGGTTGT+CGG + tig0026572:15429-15448 None:intergenic 20.0%
!!! TAATAAAGCTTATATTTCTG+AGG + tig0026572:15522-15541 None:intergenic 20.0%
!! ATTGATATAGAGTTAAATGA+GGG + tig0026572:15657-15676 None:intergenic 20.0%
! CATTGATATAGAGTTAAATG+AGG + tig0026572:15658-15677 None:intergenic 25.0%
! GATAATGATAATTCTCACAT+TGG - tig0026572:16052-16071 Msa1429830:intron 25.0%
!! GTAATGCTGATAATGAAAAT+AGG - tig0026572:16209-16228 Msa1429830:CDS 25.0%
! TGATTGAAGAGTTACTTAAT+TGG - tig0026572:16269-16288 Msa1429830:CDS 25.0%
! AATAGGAATATTTCATGTCA+TGG - tig0026572:16344-16363 Msa1429830:CDS 25.0%
! ATGAAAAAGATAGCAGAAAA+TGG + tig0026572:16405-16424 None:intergenic 25.0%
! GTATTAAGTAACTATCAAAG+TGG + tig0026572:16494-16513 None:intergenic 25.0%
! ATACAGTATGCAATATATTG+TGG - tig0026572:16510-16529 Msa1429830:five_prime_UTR 25.0%
! TTAGGATCAAATTAAGAAGA+AGG - tig0026572:16549-16568 Msa1429830:five_prime_UTR 25.0%
! AAATTAAGAAGAAGGATTGT+TGG - tig0026572:16557-16576 Msa1429830:five_prime_UTR 25.0%
! CATTGATATAGAGTTAAATG+AGG + tig0026572:15658-15677 None:intergenic 25.0%
! GATAATGATAATTCTCACAT+TGG - tig0026572:16052-16071 Msa1429830:intron 25.0%
!! GTAATGCTGATAATGAAAAT+AGG - tig0026572:16209-16228 Msa1429830:CDS 25.0%
! TGATTGAAGAGTTACTTAAT+TGG - tig0026572:16269-16288 Msa1429830:CDS 25.0%
! AATAGGAATATTTCATGTCA+TGG - tig0026572:16344-16363 Msa1429830:CDS 25.0%
! ATGAAAAAGATAGCAGAAAA+TGG + tig0026572:16405-16424 None:intergenic 25.0%
! GTATTAAGTAACTATCAAAG+TGG + tig0026572:16494-16513 None:intergenic 25.0%
! ATACAGTATGCAATATATTG+TGG - tig0026572:16510-16529 Msa1429830:five_prime_UTR 25.0%
! TTAGGATCAAATTAAGAAGA+AGG - tig0026572:16549-16568 Msa1429830:five_prime_UTR 25.0%
! AAATTAAGAAGAAGGATTGT+TGG - tig0026572:16557-16576 Msa1429830:five_prime_UTR 25.0%
AATGAGGGAATTACAACAAA+GGG + tig0026572:15642-15661 None:intergenic 30.0%
AAATGAGGGAATTACAACAA+AGG + tig0026572:15643-15662 None:intergenic 30.0%
ATTAATGTTGCAGAAAGAGA+AGG - tig0026572:15762-15781 Msa1429830:CDS 30.0%
TTAATGTTGCAGAAAGAGAA+GGG - tig0026572:15763-15782 Msa1429830:CDS 30.0%
ACCACATTCTGATTCTAATT+GGG - tig0026572:16096-16115 Msa1429830:intron 30.0%
TCAAAACAACACACTATTGA+TGG - tig0026572:16175-16194 Msa1429830:CDS 30.0%
!! ACTATTGATGGTGGTAATAA+TGG - tig0026572:16187-16206 Msa1429830:CDS 30.0%
! TGCTGATAATGAAAATAGGT+TGG - tig0026572:16213-16232 Msa1429830:CDS 30.0%
AATATTTCATGTCATGGACA+TGG - tig0026572:16350-16369 Msa1429830:CDS 30.0%
AGTATGCAATATATTGTGGT+TGG - tig0026572:16514-16533 Msa1429830:five_prime_UTR 30.0%
GTATGCAATATATTGTGGTT+GGG - tig0026572:16515-16534 Msa1429830:five_prime_UTR 30.0%
AATGAGGGAATTACAACAAA+GGG + tig0026572:15642-15661 None:intergenic 30.0%
AAATGAGGGAATTACAACAA+AGG + tig0026572:15643-15662 None:intergenic 30.0%
ATTAATGTTGCAGAAAGAGA+AGG - tig0026572:15762-15781 Msa1429830:CDS 30.0%
TTAATGTTGCAGAAAGAGAA+GGG - tig0026572:15763-15782 Msa1429830:CDS 30.0%
ACCACATTCTGATTCTAATT+GGG - tig0026572:16096-16115 Msa1429830:intron 30.0%
TCAAAACAACACACTATTGA+TGG - tig0026572:16175-16194 Msa1429830:CDS 30.0%
!! ACTATTGATGGTGGTAATAA+TGG - tig0026572:16187-16206 Msa1429830:CDS 30.0%
! TGCTGATAATGAAAATAGGT+TGG - tig0026572:16213-16232 Msa1429830:CDS 30.0%
AATATTTCATGTCATGGACA+TGG - tig0026572:16350-16369 Msa1429830:CDS 30.0%
AGTATGCAATATATTGTGGT+TGG - tig0026572:16514-16533 Msa1429830:five_prime_UTR 30.0%
GTATGCAATATATTGTGGTT+GGG - tig0026572:16515-16534 Msa1429830:five_prime_UTR 30.0%
TGAAATAAATGAGGTGTAGC+AGG + tig0026572:15295-15314 None:intergenic 35.0%
! GGATTTTATCAAACTTGTGC+TGG - tig0026572:15339-15358 Msa1429830:three_prime_UTR 35.0%
TGTATGTTGATGTGAGTAAG+TGG + tig0026572:15464-15483 None:intergenic 35.0%
! GCTTTATTAATTCCCAACCA+AGG - tig0026572:15533-15552 Msa1429830:CDS 35.0%
ATTAATTCCCAACCAAGGAA+AGG - tig0026572:15538-15557 Msa1429830:CDS 35.0%
CATATTTCCTTTCCTTGGTT+GGG + tig0026572:15548-15567 None:intergenic 35.0%
TGTACCATATTTCCTTTCCT+TGG + tig0026572:15553-15572 None:intergenic 35.0%
CAACAAACAAAGAAGTTCAG+AGG - tig0026572:15571-15590 Msa1429830:CDS 35.0%
!! CAAGCTGCAATTTTGATGAA+TGG - tig0026572:15836-15855 Msa1429830:CDS 35.0%
TACCACTACCACCATTATAA+GGG + tig0026572:15925-15944 None:intergenic 35.0%
! AACAAGTAAGTGATGGAGAA+GGG + tig0026572:16024-16043 None:intergenic 35.0%
! AAACAAGTAAGTGATGGAGA+AGG + tig0026572:16025-16044 None:intergenic 35.0%
ATAATTCTCACATTGGAGTG+TGG - tig0026572:16059-16078 Msa1429830:intron 35.0%
GACCACATTCTGATTCTAAT+TGG - tig0026572:16095-16114 Msa1429830:intron 35.0%
ACCCAATTAGAATCAGAATG+TGG + tig0026572:16100-16119 None:intergenic 35.0%
TGATTCTAATTGGGTCATGA+GGG - tig0026572:16105-16124 Msa1429830:intron 35.0%
ACTATAGAGTCAGAAGAGAT+AGG - tig0026572:16151-16170 Msa1429830:intron 35.0%
AAACAACACACTATTGATGG+TGG - tig0026572:16178-16197 Msa1429830:CDS 35.0%
CTTAATTGGAACTATCCATG+TGG - tig0026572:16283-16302 Msa1429830:CDS 35.0%
! TTACTTGAAGTTGATCCACA+TGG + tig0026572:16301-16320 None:intergenic 35.0%
AGTAATTAACTCTCATCAGC+AGG - tig0026572:16316-16335 Msa1429830:CDS 35.0%
TGAAATAAATGAGGTGTAGC+AGG + tig0026572:15295-15314 None:intergenic 35.0%
! GGATTTTATCAAACTTGTGC+TGG - tig0026572:15339-15358 Msa1429830:three_prime_UTR 35.0%
TGTATGTTGATGTGAGTAAG+TGG + tig0026572:15464-15483 None:intergenic 35.0%
! GCTTTATTAATTCCCAACCA+AGG - tig0026572:15533-15552 Msa1429830:CDS 35.0%
ATTAATTCCCAACCAAGGAA+AGG - tig0026572:15538-15557 Msa1429830:CDS 35.0%
CATATTTCCTTTCCTTGGTT+GGG + tig0026572:15548-15567 None:intergenic 35.0%
TGTACCATATTTCCTTTCCT+TGG + tig0026572:15553-15572 None:intergenic 35.0%
CAACAAACAAAGAAGTTCAG+AGG - tig0026572:15571-15590 Msa1429830:CDS 35.0%
!! CAAGCTGCAATTTTGATGAA+TGG - tig0026572:15836-15855 Msa1429830:CDS 35.0%
TACCACTACCACCATTATAA+GGG + tig0026572:15925-15944 None:intergenic 35.0%
! AACAAGTAAGTGATGGAGAA+GGG + tig0026572:16024-16043 None:intergenic 35.0%
! AAACAAGTAAGTGATGGAGA+AGG + tig0026572:16025-16044 None:intergenic 35.0%
ATAATTCTCACATTGGAGTG+TGG - tig0026572:16059-16078 Msa1429830:intron 35.0%
GACCACATTCTGATTCTAAT+TGG - tig0026572:16095-16114 Msa1429830:intron 35.0%
ACCCAATTAGAATCAGAATG+TGG + tig0026572:16100-16119 None:intergenic 35.0%
TGATTCTAATTGGGTCATGA+GGG - tig0026572:16105-16124 Msa1429830:intron 35.0%
ACTATAGAGTCAGAAGAGAT+AGG - tig0026572:16151-16170 Msa1429830:intron 35.0%
AAACAACACACTATTGATGG+TGG - tig0026572:16178-16197 Msa1429830:CDS 35.0%
CTTAATTGGAACTATCCATG+TGG - tig0026572:16283-16302 Msa1429830:CDS 35.0%
! TTACTTGAAGTTGATCCACA+TGG + tig0026572:16301-16320 None:intergenic 35.0%
AGTAATTAACTCTCATCAGC+AGG - tig0026572:16316-16335 Msa1429830:CDS 35.0%
TCTAGGCTTGACTATAGAGT+TGG + tig0026572:15202-15221 None:intergenic 40.0%
AAAGTTGTGATCCACTCTCT+AGG + tig0026572:15219-15238 None:intergenic 40.0%
!!! GCAGGTAGGGTTATCTTTTT+TGG + tig0026572:15277-15296 None:intergenic 40.0%
TAAATGAGGTGTAGCAGGTA+GGG + tig0026572:15290-15309 None:intergenic 40.0%
ATAAATGAGGTGTAGCAGGT+AGG + tig0026572:15291-15310 None:intergenic 40.0%
ATGAGCATAGGACGAAAAGT+GGG + tig0026572:15397-15416 None:intergenic 40.0%
TATGAGCATAGGACGAAAAG+TGG + tig0026572:15398-15417 None:intergenic 40.0%
! TTTATATTGGGTTGTCGGTG+TGG + tig0026572:15424-15443 None:intergenic 40.0%
CCATATTTCCTTTCCTTGGT+TGG + tig0026572:15549-15568 None:intergenic 40.0%
CCAACCAAGGAAAGGAAATA+TGG - tig0026572:15546-15565 Msa1429830:CDS 40.0%
TAAGATGTAGGTGCATTGTG+TGG + tig0026572:15685-15704 None:intergenic 40.0%
TTCCCTGTGTCAAAGAATCA+AGG - tig0026572:15878-15897 Msa1429830:CDS 40.0%
CACCTTGATTCTTTGACACA+GGG + tig0026572:15883-15902 None:intergenic 40.0%
TCACCTTGATTCTTTGACAC+AGG + tig0026572:15884-15903 None:intergenic 40.0%
ACCACTACCACCATTATAAG+GGG + tig0026572:15924-15943 None:intergenic 40.0%
CTACCACTACCACCATTATA+AGG + tig0026572:15926-15945 None:intergenic 40.0%
!! TATAATGGTGGTAGTGGTAG+TGG - tig0026572:15926-15945 Msa1429830:CDS 40.0%
TGATTCTTTCTTGTCTCCCA+AGG - tig0026572:15952-15971 Msa1429830:CDS 40.0%
CTCCATCACTTACTTGTTTG+AGG - tig0026572:16026-16045 Msa1429830:intron 40.0%
AGCCTCAAACAAGTAAGTGA+TGG + tig0026572:16031-16050 None:intergenic 40.0%
CTGATTCTAATTGGGTCATG+AGG - tig0026572:16104-16123 Msa1429830:intron 40.0%
!! TAGGTTGGTAGTAGAAGAAG+AGG - tig0026572:16228-16247 Msa1429830:CDS 40.0%
CTCATCAGCAGGAAGAAAAT+AGG - tig0026572:16327-16346 Msa1429830:CDS 40.0%
ATAGCAGAAAATGGCATGCA+TGG + tig0026572:16396-16415 None:intergenic 40.0%
GGTTGGGAAACATGAGAATT+AGG - tig0026572:16531-16550 Msa1429830:five_prime_UTR 40.0%
TCTAGGCTTGACTATAGAGT+TGG + tig0026572:15202-15221 None:intergenic 40.0%
AAAGTTGTGATCCACTCTCT+AGG + tig0026572:15219-15238 None:intergenic 40.0%
!!! GCAGGTAGGGTTATCTTTTT+TGG + tig0026572:15277-15296 None:intergenic 40.0%
TAAATGAGGTGTAGCAGGTA+GGG + tig0026572:15290-15309 None:intergenic 40.0%
ATAAATGAGGTGTAGCAGGT+AGG + tig0026572:15291-15310 None:intergenic 40.0%
ATGAGCATAGGACGAAAAGT+GGG + tig0026572:15397-15416 None:intergenic 40.0%
TATGAGCATAGGACGAAAAG+TGG + tig0026572:15398-15417 None:intergenic 40.0%
! TTTATATTGGGTTGTCGGTG+TGG + tig0026572:15424-15443 None:intergenic 40.0%
CCATATTTCCTTTCCTTGGT+TGG + tig0026572:15549-15568 None:intergenic 40.0%
CCAACCAAGGAAAGGAAATA+TGG - tig0026572:15546-15565 Msa1429830:CDS 40.0%
TAAGATGTAGGTGCATTGTG+TGG + tig0026572:15685-15704 None:intergenic 40.0%
TTCCCTGTGTCAAAGAATCA+AGG - tig0026572:15878-15897 Msa1429830:CDS 40.0%
CACCTTGATTCTTTGACACA+GGG + tig0026572:15883-15902 None:intergenic 40.0%
TCACCTTGATTCTTTGACAC+AGG + tig0026572:15884-15903 None:intergenic 40.0%
ACCACTACCACCATTATAAG+GGG + tig0026572:15924-15943 None:intergenic 40.0%
CTACCACTACCACCATTATA+AGG + tig0026572:15926-15945 None:intergenic 40.0%
!! TATAATGGTGGTAGTGGTAG+TGG - tig0026572:15926-15945 Msa1429830:CDS 40.0%
TGATTCTTTCTTGTCTCCCA+AGG - tig0026572:15952-15971 Msa1429830:CDS 40.0%
CTCCATCACTTACTTGTTTG+AGG - tig0026572:16026-16045 Msa1429830:intron 40.0%
AGCCTCAAACAAGTAAGTGA+TGG + tig0026572:16031-16050 None:intergenic 40.0%
CTGATTCTAATTGGGTCATG+AGG - tig0026572:16104-16123 Msa1429830:intron 40.0%
!! TAGGTTGGTAGTAGAAGAAG+AGG - tig0026572:16228-16247 Msa1429830:CDS 40.0%
CTCATCAGCAGGAAGAAAAT+AGG - tig0026572:16327-16346 Msa1429830:CDS 40.0%
ATAGCAGAAAATGGCATGCA+TGG + tig0026572:16396-16415 None:intergenic 40.0%
GGTTGGGAAACATGAGAATT+AGG - tig0026572:16531-16550 Msa1429830:five_prime_UTR 40.0%
CTATAGTCAAGCCTAGAGAG+TGG - tig0026572:15205-15224 Msa1429830:three_prime_UTR 45.0%
CGGTGTGGAAATATGAGCAT+AGG + tig0026572:15409-15428 None:intergenic 45.0%
CAAAGAAGTTCAGAGGAGTC+AGG - tig0026572:15578-15597 Msa1429830:CDS 45.0%
GAGGGAATTACAACAAAGGG+TGG + tig0026572:15639-15658 None:intergenic 45.0%
! AGAAAGAGAAGGGTGTGGTT+AGG - tig0026572:15773-15792 Msa1429830:CDS 45.0%
! AGGAACATTTGAGACAGCAG+AGG - tig0026572:15793-15812 Msa1429830:CDS 45.0%
GCTAGTGACACCCCTTATAA+TGG - tig0026572:15911-15930 Msa1429830:CDS 45.0%
AGTGACACCCCTTATAATGG+TGG - tig0026572:15914-15933 Msa1429830:CDS 45.0%
ACCCCTTATAATGGTGGTAG+TGG - tig0026572:15920-15939 Msa1429830:CDS 45.0%
TCATGAGGGTTGAACTTGGT+GGG - tig0026572:16119-16138 Msa1429830:intron 45.0%
CTATAGTCAAGCCTAGAGAG+TGG - tig0026572:15205-15224 Msa1429830:three_prime_UTR 45.0%
CGGTGTGGAAATATGAGCAT+AGG + tig0026572:15409-15428 None:intergenic 45.0%
CAAAGAAGTTCAGAGGAGTC+AGG - tig0026572:15578-15597 Msa1429830:CDS 45.0%
GAGGGAATTACAACAAAGGG+TGG + tig0026572:15639-15658 None:intergenic 45.0%
! AGAAAGAGAAGGGTGTGGTT+AGG - tig0026572:15773-15792 Msa1429830:CDS 45.0%
! AGGAACATTTGAGACAGCAG+AGG - tig0026572:15793-15812 Msa1429830:CDS 45.0%
GCTAGTGACACCCCTTATAA+TGG - tig0026572:15911-15930 Msa1429830:CDS 45.0%
AGTGACACCCCTTATAATGG+TGG - tig0026572:15914-15933 Msa1429830:CDS 45.0%
ACCCCTTATAATGGTGGTAG+TGG - tig0026572:15920-15939 Msa1429830:CDS 45.0%
TCATGAGGGTTGAACTTGGT+GGG - tig0026572:16119-16138 Msa1429830:intron 45.0%
GTTGCAGAAAGAGAAGGGTG+TGG - tig0026572:15768-15787 Msa1429830:CDS 50.0%
!! AGTAGCTCAGAGAGTGCCTT+GGG + tig0026572:15971-15990 None:intergenic 50.0%
GGAGTGTGGCAAAAAAGAGC+TGG - tig0026572:16073-16092 Msa1429830:intron 50.0%
TGGGTCATGAGGGTTGAACT+TGG - tig0026572:16115-16134 Msa1429830:intron 50.0%
GTCATGAGGGTTGAACTTGG+TGG - tig0026572:16118-16137 Msa1429830:intron 50.0%
GGCTTGACTATAGAGTTGGC+CGG + tig0026572:15198-15217 None:intergenic 50.0%
GTTGCAGAAAGAGAAGGGTG+TGG - tig0026572:15768-15787 Msa1429830:CDS 50.0%
!! AGTAGCTCAGAGAGTGCCTT+GGG + tig0026572:15971-15990 None:intergenic 50.0%
GGAGTGTGGCAAAAAAGAGC+TGG - tig0026572:16073-16092 Msa1429830:intron 50.0%
TGGGTCATGAGGGTTGAACT+TGG - tig0026572:16115-16134 Msa1429830:intron 50.0%
GTCATGAGGGTTGAACTTGG+TGG - tig0026572:16118-16137 Msa1429830:intron 50.0%
!! GAGTAGCTCAGAGAGTGCCT+TGG + tig0026572:15972-15991 None:intergenic 55.0%
!! GAGTAGCTCAGAGAGTGCCT+TGG + tig0026572:15972-15991 None:intergenic 55.0%
AGGAGTCAGGCAGCGCCAGT+GGG - tig0026572:15591-15610 Msa1429830:CDS 65.0%
CTGACACCCAAGAGCCCCAC+TGG + tig0026572:15609-15628 None:intergenic 65.0%
AGGAGTCAGGCAGCGCCAGT+GGG - tig0026572:15591-15610 Msa1429830:CDS 65.0%
CTGACACCCAAGAGCCCCAC+TGG + tig0026572:15609-15628 None:intergenic 65.0%
GAGGAGTCAGGCAGCGCCAG+TGG - tig0026572:15590-15609 Msa1429830:CDS 70.0%
GGAGTCAGGCAGCGCCAGTG+GGG - tig0026572:15592-15611 Msa1429830:CDS 70.0%
GCAGCGCCAGTGGGGCTCTT+GGG - tig0026572:15600-15619 Msa1429830:CDS 70.0%
GAGGAGTCAGGCAGCGCCAG+TGG - tig0026572:15590-15609 Msa1429830:CDS 70.0%
GGAGTCAGGCAGCGCCAGTG+GGG - tig0026572:15592-15611 Msa1429830:CDS 70.0%
GCAGCGCCAGTGGGGCTCTT+GGG - tig0026572:15600-15619 Msa1429830:CDS 70.0%
GGCAGCGCCAGTGGGGCTCT+TGG - tig0026572:15599-15618 Msa1429830:CDS 75.0%
GGCAGCGCCAGTGGGGCTCT+TGG - tig0026572:15599-15618 Msa1429830:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0026572 gene 15198 16620 15198 ID=Msa1429830;Name=Msa1429830
tig0026572 mRNA 15198 16620 15198 ID=Msa1429830-mRNA-1;Parent=Msa1429830;Name=Msa1429830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|1|1|2|296|286
tig0026572 exon 15198 16043 15198 ID=Msa1429830-mRNA-1:exon:6709;Parent=Msa1429830-mRNA-1
tig0026572 exon 16171 16620 16171 ID=Msa1429830-mRNA-1:exon:6708;Parent=Msa1429830-mRNA-1
tig0026572 five_prime_UTR 16482 16620 16482 ID=Msa1429830-mRNA-1:five_prime_utr;Parent=Msa1429830-mRNA-1
tig0026572 CDS 16171 16481 16171 ID=Msa1429830-mRNA-1:cds;Parent=Msa1429830-mRNA-1
tig0026572 CDS 15494 16043 15494 ID=Msa1429830-mRNA-1:cds;Parent=Msa1429830-mRNA-1
tig0026572 three_prime_UTR 15198 15493 15198 ID=Msa1429830-mRNA-1:three_prime_utr;Parent=Msa1429830-mRNA-1
Gene Sequence

>Msa1429830

ATGGATTTTATCAAACTTGTGCTGGTGAAACTTTTATTGCATATGTACTGTTTCAATCCCACTTTTCGTCCTATGCTCATATTTCCACACCGACAACCCAATATAAATAAATTTAGCAATATCACCACTTACTCACATCAACATACACATTTCACATTATATTATTATATGTTTTATGTATACCTCAGAAATATAAGCTTTATTAATTCCCAACCAAGGAAAGGAAATATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTAAAGAGAAGGGTGTGGTTAGGAACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGATCAAGCTGCAATTTTGATGAATGGTCAAAGTGCAAAGACTAATTTCCCTGTGTCAAAGAATCAAGGTGAAGAAGTTGCTAGTGACACCCCTTATAATGGTGGTAGTGGTAGTGGTGATGATTCTTTCTTGTCTCCCAAGGCACTCTCTGAGCTACTCAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCACTTACTTGTTTGAGGCTAGATAATGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGACCACATTCTGATTCTAATTGGGTCATGAGGGTTGAACTTGGTGGGAAGAAAAAGACTATAGAGTCAGAAGAGATAGGATCAAAACAACACACTATTGATGGTGGTAATAATGGTAATGCTGATAATGAAAATAGGTTGGTAGTAGAAGAAGAGGAGAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGATCAACTTCAAGTAATTAA
Protein sequence

>Msa1429830

MDFIKLVLVKLLLHMYCFNPTFRPMLIFPHRQPNINKFSNITTYSHQHTHFTLYYYMFYVYLRNISFINSQPRKGNMVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPVSKNQGEEVASDTPYNGGSGSGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGPHSDSNWVMRVELGGKKKTIESEEIGSKQHTIDGGNNGNADNENRLVVEEEERVALQMIEELLNWNYPCGSTSSN*