Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715020 | AES94704.2 | 96.959 | 592 | 18 | 0 | 1 | 592 | 1 | 592 | 0.0 | 1160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715020 | sp|Q8N2M8|CLASR_HUMAN | 38.849 | 139 | 85 | 0 | 1 | 139 | 1 | 139 | 7.55e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715020 | G7K6P7 | 96.959 | 592 | 18 | 0 | 1 | 592 | 1 | 592 | 0.0 | 1160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715020 | Msa0756990 | 0.897790 | 9.988399e-77 | -8.615850e-47 |
| Msa0715020 | Msa0797990 | 0.811658 | 6.270167e-51 | -8.615850e-47 |
| Msa0715020 | Msa0836610 | 0.935033 | 1.599277e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715020 | MtrunA17_Chr5g0402261 | 97.814 | 549 | 12 | 0 | 1 | 549 | 1 | 549 | 0.0 | 1074 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715020 | AT4G36980.4 | 70.625 | 480 | 129 | 6 | 1 | 474 | 1 | 474 | 0.0 | 545 |
| Msa0715020 | AT4G36980.1 | 70.625 | 480 | 129 | 6 | 1 | 474 | 1 | 474 | 0.0 | 545 |
| Msa0715020 | AT4G36980.2 | 70.625 | 480 | 129 | 6 | 1 | 474 | 1 | 474 | 0.0 | 545 |
| Msa0715020 | AT4G36980.3 | 70.625 | 480 | 128 | 7 | 1 | 474 | 1 | 473 | 0.0 | 540 |
Find 149 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAATACATAACTGAATT+TGG | 0.161027 | 5_1:+7896044 | Msa0715020:CDS |
| TGGGAAATCAAATCAAAATT+AGG | 0.163598 | 5_1:+7892191 | None:intergenic |
| ATTCAGAAAGTTGACATTTC+AGG | 0.223226 | 5_1:+7898069 | Msa0715020:intron |
| GAGATAATTGCAAAAGAATA+TGG | 0.223621 | 5_1:+7895330 | Msa0715020:CDS |
| AAGTTAAAGGCAAGTGGTTC+TGG | 0.286261 | 5_1:+7897307 | Msa0715020:CDS |
| CAAGTTCTCGCTCCCGTTCT+CGG | 0.286578 | 5_1:+7897893 | Msa0715020:CDS |
| GACCGAGAACGGGTGCGATT+AGG | 0.288278 | 5_1:-7897919 | None:intergenic |
| CTCAGCACTAGCAAAGTTAA+AGG | 0.294524 | 5_1:+7897294 | Msa0715020:CDS |
| ACCGAGAACGGGTGCGATTA+GGG | 0.296244 | 5_1:-7897918 | None:intergenic |
| TAGAATACATAACTGAATTT+GGG | 0.302082 | 5_1:+7896045 | Msa0715020:CDS |
| CCCCTAATCGCACCCGTTCT+CGG | 0.323479 | 5_1:+7897917 | Msa0715020:CDS |
| CTGGAACCCCTGCTTCTACT+TGG | 0.333387 | 5_1:-7897859 | None:intergenic |
| GGGAAATCAAATCAAAATTA+GGG | 0.336847 | 5_1:+7892192 | None:intergenic |
| ACATTTCCACTTACAATTGC+AGG | 0.337629 | 5_1:-7895438 | None:intergenic |
| AATATCTTGTTTCCCATTCC+AGG | 0.340245 | 5_1:-7893652 | None:intergenic |
| CTATACCTTTGCAGATTTGA+TGG | 0.357306 | 5_1:+7893774 | Msa0715020:intron |
| CACCTGGGAGAACGAGAATA+AGG | 0.360202 | 5_1:-7897979 | None:intergenic |
| CACCCCAAGAGAGACTTAAA+AGG | 0.365422 | 5_1:+7897368 | Msa0715020:CDS |
| TTGCATGTCGATCCTGCTTC+TGG | 0.366742 | 5_1:+7896445 | Msa0715020:CDS |
| GTGCTCTCCTAGATTTCATT+CGG | 0.367039 | 5_1:+7893799 | Msa0715020:CDS |
| TGATGTAGCACACGAGTTCC+AGG | 0.390478 | 5_1:-7895626 | None:intergenic |
| ATTGCTCCCAAGTGGTTAGA+AGG | 0.397816 | 5_1:+7898170 | Msa0715020:CDS |
| AGAACTTGAGTGATATCTTC+TGG | 0.399716 | 5_1:-7897878 | None:intergenic |
| AAGCTTATTCTCGTTCTAGA+AGG | 0.405006 | 5_1:+7895817 | Msa0715020:CDS |
| TAGGAGTCTTTGGTTTGCTT+CGG | 0.406206 | 5_1:-7896019 | None:intergenic |
| GCGATTAGGGGACCGAGAAC+GGG | 0.414338 | 5_1:-7897905 | None:intergenic |
| CTGTATTGCAGGTCATCATC+TGG | 0.420609 | 5_1:+7896406 | Msa0715020:intron |
| GTATGGTTGGCTTGTTTACA+TGG | 0.422177 | 5_1:+7895362 | Msa0715020:CDS |
| TCCTCAGGATACCCTGGAAT+GGG | 0.422424 | 5_1:+7893640 | Msa0715020:intron |
| TAACAATCCTTGTTGATCTT+CGG | 0.423578 | 5_1:-7892440 | None:intergenic |
| TGGGTGATGGTATACCTTAC+GGG | 0.429124 | 5_1:-7896505 | None:intergenic |
| ACAAGCCAAGAAAAGAGAAC+AGG | 0.429228 | 5_1:+7897527 | Msa0715020:CDS |
| TGCAAATGGAGCAGCAGCCT+TGG | 0.433833 | 5_1:-7894187 | None:intergenic |
| AACCTGTGAGTAAGATCCTT+TGG | 0.435314 | 5_1:-7895184 | None:intergenic |
| GCGAGAAGGGGACCGAGAAC+GGG | 0.441052 | 5_1:-7897929 | None:intergenic |
| CAAAAGAATATGGGGTCAAA+AGG | 0.442771 | 5_1:+7895340 | Msa0715020:CDS |
| CCCAACCTGTCTGATGCAAA+TGG | 0.449975 | 5_1:-7894201 | None:intergenic |
| TACTATCCCGAATGAAATCT+AGG | 0.453036 | 5_1:-7893806 | None:intergenic |
| CGAGAAGCTACACGGATACC+TGG | 0.457347 | 5_1:+7895608 | Msa0715020:CDS |
| CTCCTTATTCTCGTTCTCCC+AGG | 0.459604 | 5_1:+7897977 | Msa0715020:CDS |
| GGCAAGAAGGTCGGAGAAGA+AGG | 0.460367 | 5_1:+7892273 | Msa0715020:CDS |
| TCTGATTTGCGAGAATTTGA+AGG | 0.461899 | 5_1:+7892232 | Msa0715020:five_prime_UTR |
| AGATAATTGCAAAAGAATAT+GGG | 0.462979 | 5_1:+7895331 | Msa0715020:CDS |
| TGCTCTCCTAGATTTCATTC+GGG | 0.465274 | 5_1:+7893800 | Msa0715020:CDS |
| ATAGGCGTCGCAGCCGCAGC+AGG | 0.465591 | 5_1:+7897598 | Msa0715020:CDS |
| AAGGATCTTACTCACAGGTT+GGG | 0.468137 | 5_1:+7895187 | Msa0715020:CDS |
| CTGCTCCATTTGCATCAGAC+AGG | 0.468882 | 5_1:+7894196 | Msa0715020:CDS |
| TATATACATGCAGGGAATCA+AGG | 0.473761 | 5_1:+7895778 | Msa0715020:intron |
| TAAGATCCTTTGGTTGCAGC+AGG | 0.477039 | 5_1:-7895174 | None:intergenic |
| TGCGATTAGGGGACCGAGAA+CGG | 0.478186 | 5_1:-7897906 | None:intergenic |
| CTGGAGAAGCAGATGGAACT+AGG | 0.485701 | 5_1:+7896072 | Msa0715020:CDS |
| CGGGGAGTAGGACCGTGATC+TGG | 0.488896 | 5_1:-7895949 | None:intergenic |
| TGGAACTCGTGTGCTACATC+AGG | 0.490057 | 5_1:+7895628 | Msa0715020:CDS |
| GCGGAGAACGAGTGCGAGAA+GGG | 0.491633 | 5_1:-7897942 | None:intergenic |
| TATACCTTTGCAGATTTGAT+GGG | 0.497057 | 5_1:+7893775 | Msa0715020:intron |
| AACTGAGTCGTAAGGAAAGA+AGG | 0.499230 | 5_1:+7895555 | Msa0715020:CDS |
| TCTGGTGTATCCGTTGATAA+AGG | 0.500146 | 5_1:+7896463 | Msa0715020:CDS |
| GTAGAAGTCCAAGTAGAAGC+AGG | 0.500172 | 5_1:+7897851 | Msa0715020:CDS |
| CTAGTCGATTGAGTAGGTAT+AGG | 0.500217 | 5_1:+7897580 | Msa0715020:CDS |
| TGATTAACTGCAGAAGGTAC+AGG | 0.506954 | 5_1:+7897824 | Msa0715020:intron |
| TGCGAGAAGGGGACCGAGAA+CGG | 0.508604 | 5_1:-7897930 | None:intergenic |
| CGAGAATAAGCTTCGTAAGT+AGG | 0.508612 | 5_1:-7895807 | None:intergenic |
| GAATATGGGGTCAAAAGGTA+TGG | 0.513227 | 5_1:+7895345 | Msa0715020:CDS |
| AAAGAGAACAGGAGCGACAG+AGG | 0.514412 | 5_1:+7897538 | Msa0715020:CDS |
| TCTCTCTCTTTCAACTTGAG+AGG | 0.516754 | 5_1:-7895582 | None:intergenic |
| CAATCCTTGTTGATCTTCGG+TGG | 0.520275 | 5_1:-7892437 | None:intergenic |
| GACTTTAGCACCTTTATCAA+CGG | 0.520392 | 5_1:-7896473 | None:intergenic |
| AGATTGCACACAAGCCTCGC+TGG | 0.522876 | 5_1:-7898139 | None:intergenic |
| TCAGGCTAAGAAACCGTTCA+AGG | 0.524214 | 5_1:+7898087 | Msa0715020:CDS |
| CCTATGCAAGGCGTTATTCA+CGG | 0.524561 | 5_1:+7895973 | Msa0715020:CDS |
| TTCCTCAGGATACCCTGGAA+TGG | 0.529350 | 5_1:+7893639 | Msa0715020:intron |
| AGCGATGATAGCAATGATGA+AGG | 0.531426 | 5_1:+7895303 | Msa0715020:CDS |
| GTGTGATAAAATACCTTGGT+GGG | 0.539061 | 5_1:-7897635 | None:intergenic |
| AAAGGATCTTACTCACAGGT+TGG | 0.542897 | 5_1:+7895186 | Msa0715020:CDS |
| ATGGGGTCAAAAGGTATGGT+TGG | 0.544068 | 5_1:+7895349 | Msa0715020:CDS |
| CTCGAGTTGATACATTAAAC+CGG | 0.548200 | 5_1:+7896129 | Msa0715020:CDS |
| ATATCTTGTTTCCCATTCCA+GGG | 0.548452 | 5_1:-7893651 | None:intergenic |
| TGCGGAGAACGAGTGCGAGA+AGG | 0.549507 | 5_1:-7897943 | None:intergenic |
| TAATGTATCAACTCGAGATG+TGG | 0.554923 | 5_1:-7896123 | None:intergenic |
| AATAACGCCTTGCATAGGAC+GGG | 0.555643 | 5_1:-7895968 | None:intergenic |
| GTAGAGGAAACTGAGTCGTA+AGG | 0.556893 | 5_1:+7895547 | Msa0715020:intron |
| AATGTATCAACTCGAGATGT+GGG | 0.557381 | 5_1:-7896122 | None:intergenic |
| GTGCAATCAATTCAAGTCGT+TGG | 0.564747 | 5_1:+7892373 | Msa0715020:CDS |
| TGAAACATTGTATGCATGAA+AGG | 0.566134 | 5_1:+7898116 | Msa0715020:CDS |
| GGGCTCTTAAAACCTCAACC+AGG | 0.567364 | 5_1:+7897331 | Msa0715020:CDS |
| CCTACTCCCCGTCCTATGCA+AGG | 0.568143 | 5_1:+7895961 | Msa0715020:CDS |
| GCGATGATAGCAATGATGAA+GGG | 0.569721 | 5_1:+7895304 | Msa0715020:CDS |
| CGAAGATGACGAGGATGATG+AGG | 0.571273 | 5_1:+7895272 | Msa0715020:CDS |
| ACGACTTGAATTGATTGCAC+AGG | 0.573876 | 5_1:-7892370 | None:intergenic |
| ATCGGGATTTAATAAAGCAT+CGG | 0.577658 | 5_1:+7893898 | Msa0715020:CDS |
| AGAATACATAACTGAATTTG+GGG | 0.582675 | 5_1:+7896046 | Msa0715020:CDS |
| TGCTACATCAGGACCCCTAC+CGG | 0.582784 | 5_1:+7895639 | Msa0715020:CDS |
| AGATGTGGCATGAGGCAAGA+AGG | 0.585460 | 5_1:+7892260 | Msa0715020:exon |
| CATGGATAAGAAAGCCAAAG+AGG | 0.585701 | 5_1:+7895380 | Msa0715020:CDS |
| CTGAAACTAGTCGATTGAGT+AGG | 0.588625 | 5_1:+7897574 | Msa0715020:CDS |
| TCAACGGATACACCAGAAGC+AGG | 0.590050 | 5_1:-7896457 | None:intergenic |
| TAGAAGTCCAAGTAGAAGCA+GGG | 0.590908 | 5_1:+7897852 | Msa0715020:CDS |
| AGGCAAAAGGAGATAATCAA+AGG | 0.590916 | 5_1:+7895411 | Msa0715020:CDS |
| AAATCTAGAGATGGAGGCCA+AGG | 0.591377 | 5_1:+7894170 | Msa0715020:CDS |
| ATACGACGGAAATGGTAAAG+AGG | 0.596376 | 5_1:+7895215 | Msa0715020:CDS |
| AAGTCTTGAAGCCACCCGTA+AGG | 0.597087 | 5_1:+7896491 | Msa0715020:CDS |
| GAAGAAGGTCCATGACATGA+TGG | 0.597424 | 5_1:+7892288 | Msa0715020:CDS |
| TGTTTCATCAGTGCCTTGAA+CGG | 0.597979 | 5_1:-7898100 | None:intergenic |
| CGGAGAACGAGTGCGAGAAG+GGG | 0.598706 | 5_1:-7897941 | None:intergenic |
| TGATAGCAATGATGAAGGGA+TGG | 0.599977 | 5_1:+7895308 | Msa0715020:CDS |
| ATTTGCGAGAATTTGAAGGA+AGG | 0.600852 | 5_1:+7892236 | Msa0715020:five_prime_UTR |
| CCGTGAATAACGCCTTGCAT+AGG | 0.601191 | 5_1:-7895973 | None:intergenic |
| GATAATTGCAAAAGAATATG+GGG | 0.605763 | 5_1:+7895332 | Msa0715020:CDS |
| GCAACATGTAAATCTAGAGA+TGG | 0.608218 | 5_1:+7894161 | Msa0715020:CDS |
| TTAAAGGCAAGTGGTTCTGG+AGG | 0.608799 | 5_1:+7897310 | Msa0715020:CDS |
| AGAAGTCCAAGTAGAAGCAG+GGG | 0.610389 | 5_1:+7897853 | Msa0715020:CDS |
| TCACAGCCTGCTGCAACCAA+AGG | 0.610560 | 5_1:+7895168 | Msa0715020:CDS |
| GATTTCAGATGACGATGATG+AGG | 0.611188 | 5_1:+7895245 | Msa0715020:CDS |
| GCAGATGGAACTAGGCGTGA+AGG | 0.612922 | 5_1:+7896080 | Msa0715020:CDS |
| GAATAACGCCTTGCATAGGA+CGG | 0.613651 | 5_1:-7895969 | None:intergenic |
| GAGCAGCGTCCATCATGTCA+TGG | 0.613715 | 5_1:-7892297 | None:intergenic |
| CCGAGAACGGGTGCGATTAG+GGG | 0.613751 | 5_1:-7897917 | None:intergenic |
| AACCAAAGGATCTTACTCAC+AGG | 0.615408 | 5_1:+7895182 | Msa0715020:CDS |
| CCTTGCATAGGACGGGGAGT+AGG | 0.615985 | 5_1:-7895961 | None:intergenic |
| ACTCGAGATGTGGGAGATCG+CGG | 0.618313 | 5_1:-7896113 | None:intergenic |
| TAAGGAGAGCGTGAACGATG+CGG | 0.619732 | 5_1:-7897961 | None:intergenic |
| GGCTCTTAAAACCTCAACCA+GGG | 0.620273 | 5_1:+7897332 | Msa0715020:CDS |
| GCAGGTCAAGGTCCAGATCA+CGG | 0.623636 | 5_1:+7895937 | Msa0715020:intron |
| GGTGTGATAAAATACCTTGG+TGG | 0.625016 | 5_1:-7897636 | None:intergenic |
| TTAATAAAGCATCGGCGTAG+AGG | 0.625301 | 5_1:+7893906 | Msa0715020:CDS |
| ACATGTAAATCTAGAGATGG+AGG | 0.626918 | 5_1:+7894164 | Msa0715020:CDS |
| ATGTTGCAAAGCGTCCTCGT+CGG | 0.628314 | 5_1:-7894145 | None:intergenic |
| GTGGCATGAGGCAAGAAGGT+CGG | 0.629760 | 5_1:+7892264 | Msa0715020:CDS |
| AACGACTGTAACTCCTGCTG+CGG | 0.631562 | 5_1:-7897611 | None:intergenic |
| GAGTCGTAAGGAAAGAAGGA+AGG | 0.634052 | 5_1:+7895559 | Msa0715020:CDS |
| CTAGCAAAGTTAAAGGCAAG+TGG | 0.638031 | 5_1:+7897301 | Msa0715020:CDS |
| GTTTACATATTGCTCCCAAG+TGG | 0.639802 | 5_1:+7898162 | Msa0715020:CDS |
| AATTTGAAGGAAGGAAGATG+TGG | 0.640876 | 5_1:+7892245 | Msa0715020:exon |
| TGTCCAGGAAAAGTCTGAAG+AGG | 0.644395 | 5_1:+7893839 | Msa0715020:CDS |
| TGTGATAAAATACCTTGGTG+GGG | 0.644679 | 5_1:-7897634 | None:intergenic |
| AGAGAGAGCGAGAAGCTACA+CGG | 0.650224 | 5_1:+7895600 | Msa0715020:CDS |
| CGAGATGTGGGAGATCGCGG+TGG | 0.662862 | 5_1:-7896110 | None:intergenic |
| TAAAGGCAAGTGGTTCTGGA+GGG | 0.663853 | 5_1:+7897311 | Msa0715020:CDS |
| ATAACGCCTTGCATAGGACG+GGG | 0.672285 | 5_1:-7895967 | None:intergenic |
| GTTACAGTCGTTCCCCACCA+AGG | 0.676212 | 5_1:+7897622 | Msa0715020:CDS |
| AGGAAGGAAGATGTGGCATG+AGG | 0.678562 | 5_1:+7892252 | Msa0715020:exon |
| CAAGCCACCGAAGATCAACA+AGG | 0.682803 | 5_1:+7892433 | Msa0715020:CDS |
| GTGATGGTATACCTTACGGG+TGG | 0.693583 | 5_1:-7896502 | None:intergenic |
| GCTCTTAAAACCTCAACCAG+GGG | 0.694956 | 5_1:+7897333 | Msa0715020:CDS |
| GTTTACCTTGCAAAACGTCG+CGG | 0.695099 | 5_1:+7892343 | Msa0715020:CDS |
| TGAGGAAGACGAAGATGACG+AGG | 0.698746 | 5_1:+7895263 | Msa0715020:CDS |
| GAATACATAACTGAATTTGG+GGG | 0.701409 | 5_1:+7896047 | Msa0715020:CDS |
| AATGGTAACAGTTACCGACG+AGG | 0.731571 | 5_1:+7894131 | Msa0715020:intron |
| GTATGCATGAAAGGCCAGCG+AGG | 0.750427 | 5_1:+7898125 | Msa0715020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAAAATATAGAAAAAA+TGG | - | chr5_1:7892483-7892502 | None:intergenic | 10.0% |
| !!! | TTAAAATTGATTCTATAATT+TGG | + | chr5_1:7892523-7892542 | Msa0715020:intron | 10.0% |
| !!! | TAAAATTGATTCTATAATTT+GGG | + | chr5_1:7892524-7892543 | Msa0715020:intron | 10.0% |
| !!! | AAATAGCATAATTTTATTAA+CGG | - | chr5_1:7897761-7897780 | None:intergenic | 10.0% |
| !!! | TAAATTATCTTATTTGAAGT+AGG | - | chr5_1:7892584-7892603 | None:intergenic | 15.0% |
| !! | TGAAACAAATGTAATAATTT+AGG | + | chr5_1:7893053-7893072 | Msa0715020:intron | 15.0% |
| !! | GAAACAAATGTAATAATTTA+GGG | + | chr5_1:7893054-7893073 | Msa0715020:intron | 15.0% |
| !!! | TTTTTTTTTCTTCCATTAAA+TGG | + | chr5_1:7893116-7893135 | Msa0715020:intron | 15.0% |
| !! | TAAAACATATAATTCGTTTA+TGG | + | chr5_1:7893589-7893608 | Msa0715020:intron | 15.0% |
| !! | AAATAAGTTTCTGATAAAAA+GGG | - | chr5_1:7894565-7894584 | None:intergenic | 15.0% |
| !! | TAAATAAGTTTCTGATAAAA+AGG | - | chr5_1:7894566-7894585 | None:intergenic | 15.0% |
| !!! | TTTTTATCAGAAACTTATTT+AGG | + | chr5_1:7894565-7894584 | Msa0715020:intron | 15.0% |
| !!! | ATTTCTTTATGTAGTAATTT+TGG | + | chr5_1:7894944-7894963 | Msa0715020:intron | 15.0% |
| !!! | ATATCTTATAAATTTTGTAG+AGG | + | chr5_1:7895531-7895550 | Msa0715020:intron | 15.0% |
| !!! | AAAATATCAATATTTTCTAC+CGG | - | chr5_1:7895661-7895680 | None:intergenic | 15.0% |
| !!! | ATTCTAAAACCATAAATAAT+TGG | - | chr5_1:7896240-7896259 | None:intergenic | 15.0% |
| !!! | TATATCCTTTTTTTTTCTTT+CGG | + | chr5_1:7897166-7897185 | Msa0715020:intron | 15.0% |
| !!! | AATAGCATAATTTTATTAAC+GGG | - | chr5_1:7897760-7897779 | None:intergenic | 15.0% |
| !! | AAATATAGAAAAAATGGAGA+AGG | - | chr5_1:7892477-7892496 | None:intergenic | 20.0% |
| !!! | ATTCTATAATTTGGGATTAA+TGG | + | chr5_1:7892532-7892551 | Msa0715020:intron | 20.0% |
| !! | TTTCTATTCATGATCAAAAT+TGG | + | chr5_1:7892964-7892983 | Msa0715020:intron | 20.0% |
| !! | TTCTATTCATGATCAAAATT+GGG | + | chr5_1:7892965-7892984 | Msa0715020:intron | 20.0% |
| !!! | AACTAACTTAATTACACTTT+TGG | - | chr5_1:7893098-7893117 | None:intergenic | 20.0% |
| !!! | TTTTACTAACAAAAATTCAG+AGG | - | chr5_1:7893574-7893593 | None:intergenic | 20.0% |
| !!! | TTATAATTCATTTTTTCCTC+AGG | + | chr5_1:7893625-7893644 | Msa0715020:intron | 20.0% |
| !! | TATAAACAGTTTGATTATTG+TGG | + | chr5_1:7893975-7893994 | Msa0715020:intron | 20.0% |
| !! | ATAAAATTGTAAATAGCTGT+TGG | + | chr5_1:7894319-7894338 | Msa0715020:intron | 20.0% |
| !!! | TTTACATGAAAACAATTTTC+TGG | - | chr5_1:7894531-7894550 | None:intergenic | 20.0% |
| !!! | AATTGTTTTCATGTAAATTC+AGG | + | chr5_1:7894534-7894553 | Msa0715020:intron | 20.0% |
| !! | CATAAAGAAATAGACAATTA+TGG | - | chr5_1:7894935-7894954 | None:intergenic | 20.0% |
| !! | AGATAATTGCAAAAGAATAT+GGG | + | chr5_1:7895331-7895350 | Msa0715020:CDS | 20.0% |
| !!! | TCAGTTATGTATTCTATTTT+AGG | - | chr5_1:7896041-7896060 | None:intergenic | 20.0% |
| !! | ATAGAATACATAACTGAATT+TGG | + | chr5_1:7896044-7896063 | Msa0715020:CDS | 20.0% |
| !! | TAGAATACATAACTGAATTT+GGG | + | chr5_1:7896045-7896064 | Msa0715020:CDS | 20.0% |
| !! | ATTATGCAAAATTCATTTCA+GGG | - | chr5_1:7896337-7896356 | None:intergenic | 20.0% |
| !! | AATTATGCAAAATTCATTTC+AGG | - | chr5_1:7896338-7896357 | None:intergenic | 20.0% |
| !!! | ATGTGAATAGAGTATTAAAA+TGG | + | chr5_1:7896543-7896562 | Msa0715020:intron | 20.0% |
| !! | AAATTCCGAAAGAAAAAAAA+AGG | - | chr5_1:7897174-7897193 | None:intergenic | 20.0% |
| !!! | TGTAATTTGTGTAACTTTAT+TGG | + | chr5_1:7897676-7897695 | Msa0715020:intron | 20.0% |
| !! | CATAATATTAATTAAACCAG+AGG | - | chr5_1:7897806-7897825 | None:intergenic | 20.0% |
| !!! | GTAATTTAGGATCTTTTAGA+TGG | + | chr5_1:7892556-7892575 | Msa0715020:intron | 25.0% |
| ! | TTTGTTTATTTCACTGTTTC+TGG | + | chr5_1:7892604-7892623 | Msa0715020:intron | 25.0% |
| ! | AATTGATGTATTCAACGTAA+GGG | + | chr5_1:7892630-7892649 | Msa0715020:intron | 25.0% |
| ! | GAGAAAAAAAATAAGCTCAT+TGG | + | chr5_1:7892653-7892672 | Msa0715020:intron | 25.0% |
| !!! | TAATTTTAGTACAATGAGTG+AGG | + | chr5_1:7892733-7892752 | Msa0715020:intron | 25.0% |
| ! | ATTTAATCAGTATGCATTTC+TGG | + | chr5_1:7892758-7892777 | Msa0715020:intron | 25.0% |
| ! | TGAGCAAAAACAAAATGATA+GGG | - | chr5_1:7892799-7892818 | None:intergenic | 25.0% |
| !!! | CTTTTTTAAATCGAGCTTTT+AGG | + | chr5_1:7892834-7892853 | Msa0715020:intron | 25.0% |
| !! | GACCAAAAATCATCATTTTA+GGG | - | chr5_1:7892910-7892929 | None:intergenic | 25.0% |
| !! | CTGCTAAAAATCAAACTTTT+GGG | - | chr5_1:7892932-7892951 | None:intergenic | 25.0% |
| !! | TTTTGGTCATCAAATTGTTT+TGG | - | chr5_1:7893081-7893100 | None:intergenic | 25.0% |
| !! | TTTACGCTTTTACCATTTAA+TGG | - | chr5_1:7893131-7893150 | None:intergenic | 25.0% |
| ! | AATTGTTTGATCAAGCTAAA+AGG | + | chr5_1:7893275-7893294 | Msa0715020:intron | 25.0% |
| ! | AATTAAGAAAAGCGGAAAAT+AGG | - | chr5_1:7893450-7893469 | None:intergenic | 25.0% |
| !!! | AACAAGATATTTTGATTGAC+AGG | + | chr5_1:7893664-7893683 | Msa0715020:CDS | 25.0% |
| !! | TTGTTAATTTTGAGCGTTAT+CGG | + | chr5_1:7893880-7893899 | Msa0715020:CDS | 25.0% |
| !!! | TTCACAAACTTGGTTTTTAA+TGG | + | chr5_1:7894113-7894132 | Msa0715020:intron | 25.0% |
| ! | TCCATATATCTTTATATGCA+TGG | + | chr5_1:7894287-7894306 | Msa0715020:intron | 25.0% |
| ! | ACCATGCATATAAAGATATA+TGG | - | chr5_1:7894291-7894310 | None:intergenic | 25.0% |
| ! | TCTTAATGCAAATAATCAGA+TGG | + | chr5_1:7894361-7894380 | Msa0715020:intron | 25.0% |
| ! | GAGATAATTGCAAAAGAATA+TGG | + | chr5_1:7895330-7895349 | Msa0715020:CDS | 25.0% |
| ! | GATAATTGCAAAAGAATATG+GGG | + | chr5_1:7895332-7895351 | Msa0715020:CDS | 25.0% |
| !!! | TATTCTATTTTAGGAGTCTT+TGG | - | chr5_1:7896032-7896051 | None:intergenic | 25.0% |
| ! | AGAATACATAACTGAATTTG+GGG | + | chr5_1:7896046-7896065 | Msa0715020:CDS | 25.0% |
| ! | TCAATCTTGGCAATAATTAA+AGG | - | chr5_1:7896168-7896187 | None:intergenic | 25.0% |
| ! | TAATTATTGCCAAGATTGAT+TGG | + | chr5_1:7896169-7896188 | Msa0715020:intron | 25.0% |
| ! | TTTCCTGAACCAATTATTTA+TGG | + | chr5_1:7896228-7896247 | Msa0715020:intron | 25.0% |
| !! | AAACCATAAATAATTGGTTC+AGG | - | chr5_1:7896234-7896253 | None:intergenic | 25.0% |
| !!! | TTTTAGAATAGATCATGACT+AGG | + | chr5_1:7896251-7896270 | Msa0715020:intron | 25.0% |
| !! | GAGTATTAAAATGGTTTTTG+TGG | + | chr5_1:7896552-7896571 | Msa0715020:intron | 25.0% |
| ! | ATGGTAGAACTATATTGTTT+AGG | + | chr5_1:7896590-7896609 | Msa0715020:intron | 25.0% |
| ! | AACATTGAATTATCTCTTGA+GGG | - | chr5_1:7896779-7896798 | None:intergenic | 25.0% |
| ! | ATATTATGATTAACTGCAGA+AGG | + | chr5_1:7897818-7897837 | Msa0715020:intron | 25.0% |
| TAACAATCCTTGTTGATCTT+CGG | - | chr5_1:7892443-7892462 | None:intergenic | 30.0% | |
| TGGGATTAATGGTGTAATTT+AGG | + | chr5_1:7892543-7892562 | Msa0715020:intron | 30.0% | |
| GAATTGATGTATTCAACGTA+AGG | + | chr5_1:7892629-7892648 | Msa0715020:intron | 30.0% | |
| ATTGATGTATTCAACGTAAG+GGG | + | chr5_1:7892631-7892650 | Msa0715020:intron | 30.0% | |
| GTTGATACTCTTTGTATGTT+TGG | + | chr5_1:7892706-7892725 | Msa0715020:intron | 30.0% | |
| !! | ATGCATTTCTGGTAATGATA+AGG | + | chr5_1:7892769-7892788 | Msa0715020:intron | 30.0% |
| GTGAGCAAAAACAAAATGAT+AGG | - | chr5_1:7892800-7892819 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGCTCACGAAAA+TGG | + | chr5_1:7892805-7892824 | Msa0715020:intron | 30.0% |
| AAGCTCGATTTAAAAAAGAG+AGG | - | chr5_1:7892832-7892851 | None:intergenic | 30.0% | |
| GCAACAAATGTGATAATTGA+TGG | - | chr5_1:7892861-7892880 | None:intergenic | 30.0% | |
| ! | GGACCAAAAATCATCATTTT+AGG | - | chr5_1:7892911-7892930 | None:intergenic | 30.0% |
| ! | GCTGCTAAAAATCAAACTTT+TGG | - | chr5_1:7892933-7892952 | None:intergenic | 30.0% |
| !!! | TTGATTTTTAGCAGCAATAG+TGG | + | chr5_1:7892938-7892957 | Msa0715020:intron | 30.0% |
| !!! | GACATTAATTTGCCACTTTT+GGG | + | chr5_1:7892987-7893006 | Msa0715020:intron | 30.0% |
| ! | TCCTATATGCATTGATGAAA+GGG | + | chr5_1:7893156-7893175 | Msa0715020:intron | 30.0% |
| TTGGATTGAGAGTAATTCAA+TGG | + | chr5_1:7893190-7893209 | Msa0715020:intron | 30.0% | |
| ATTCTCATATTCGAAGAGAA+TGG | + | chr5_1:7893312-7893331 | Msa0715020:intron | 30.0% | |
| CCAAGCAAAATTAAGAAAAG+CGG | - | chr5_1:7893458-7893477 | None:intergenic | 30.0% | |
| ! | CGCTTTTCTTAATTTTGCTT+GGG | + | chr5_1:7893456-7893475 | Msa0715020:intron | 30.0% |
| ! | AAATCTGCAAAGGTATAGAT+AGG | - | chr5_1:7893772-7893791 | None:intergenic | 30.0% |
| TATACCTTTGCAGATTTGAT+GGG | + | chr5_1:7893775-7893794 | Msa0715020:intron | 30.0% | |
| ! | TGTTAATTTTGAGCGTTATC+GGG | + | chr5_1:7893881-7893900 | Msa0715020:CDS | 30.0% |
| ATCGGGATTTAATAAAGCAT+CGG | + | chr5_1:7893898-7893917 | Msa0715020:CDS | 30.0% | |
| CTGATAATAATGCCATAGAA+CGG | + | chr5_1:7894034-7894053 | Msa0715020:intron | 30.0% | |
| CATAGCTAAATTCACAAACT+TGG | + | chr5_1:7894103-7894122 | Msa0715020:intron | 30.0% | |
| AACAGTCAGTTAAAAATGTG+TGG | - | chr5_1:7894236-7894255 | None:intergenic | 30.0% | |
| ! | ATGTTTGTTGAGTGCATATT+TGG | - | chr5_1:7894731-7894750 | None:intergenic | 30.0% |
| TGTCTATAATGAGAACAATG+GGG | - | chr5_1:7894765-7894784 | None:intergenic | 30.0% | |
| CTGTCTATAATGAGAACAAT+GGG | - | chr5_1:7894766-7894785 | None:intergenic | 30.0% | |
| ACTGTCTATAATGAGAACAA+TGG | - | chr5_1:7894767-7894786 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTCATCTAAGCTG+TGG | - | chr5_1:7894863-7894882 | None:intergenic | 30.0% |
| AAGAAATAGACAATTATGGC+TGG | - | chr5_1:7894931-7894950 | None:intergenic | 30.0% | |
| !! | TTTGTCTATTGATTCTTGCA+TGG | + | chr5_1:7895030-7895049 | Msa0715020:intron | 30.0% |
| AGCTGCAAATTATAGATCTA+CGG | - | chr5_1:7895067-7895086 | None:intergenic | 30.0% | |
| !!! | ATATTTTGAGATTACCGTGT+AGG | + | chr5_1:7895494-7895513 | Msa0715020:intron | 30.0% |
| ! | ATCAATATTTTCTACCGGTA+GGG | - | chr5_1:7895656-7895675 | None:intergenic | 30.0% |
| ! | TATCAATATTTTCTACCGGT+AGG | - | chr5_1:7895657-7895676 | None:intergenic | 30.0% |
| TCAGATATTCTTCGTTCAAT+CGG | - | chr5_1:7895691-7895710 | None:intergenic | 30.0% | |
| !! | TTCTTGCATACTAGTCTTAA+TGG | + | chr5_1:7895746-7895765 | Msa0715020:intron | 30.0% |
| TTGACTCAATATATACATGC+AGG | + | chr5_1:7895769-7895788 | Msa0715020:intron | 30.0% | |
| TGACTCAATATATACATGCA+GGG | + | chr5_1:7895770-7895789 | Msa0715020:intron | 30.0% | |
| AACGAGAAGAATGAGTAAAA+TGG | - | chr5_1:7895879-7895898 | None:intergenic | 30.0% | |
| TTTACTCATTCTTCTCGTTA+AGG | + | chr5_1:7895880-7895899 | Msa0715020:intron | 30.0% | |
| CTCGTTAAGGAGAATTTATT+TGG | + | chr5_1:7895893-7895912 | Msa0715020:intron | 30.0% | |
| GAATACATAACTGAATTTGG+GGG | + | chr5_1:7896047-7896066 | Msa0715020:CDS | 30.0% | |
| ! | ATTGGTTCAGGAAACAATAT+GGG | - | chr5_1:7896222-7896241 | None:intergenic | 30.0% |
| ! | AATTGGTTCAGGAAACAATA+TGG | - | chr5_1:7896223-7896242 | None:intergenic | 30.0% |
| TAATATTTACATGCAGCTAC+AGG | - | chr5_1:7896362-7896381 | None:intergenic | 30.0% | |
| ACATTCACATATACACTGTT+GGG | - | chr5_1:7896527-7896546 | None:intergenic | 30.0% | |
| ! | TTTTTGTGGTTTCATCTGTT+AGG | + | chr5_1:7896566-7896585 | Msa0715020:intron | 30.0% |
| CATTCTTAAAGATGTACACA+AGG | + | chr5_1:7896658-7896677 | Msa0715020:intron | 30.0% | |
| GAACATTGAATTATCTCTTG+AGG | - | chr5_1:7896780-7896799 | None:intergenic | 30.0% | |
| !! | ATTCTGTTCTGTTGTTTCTT+TGG | - | chr5_1:7896871-7896890 | None:intergenic | 30.0% |
| AATGCTGATGCAAAATCTAA+TGG | - | chr5_1:7897082-7897101 | None:intergenic | 30.0% | |
| TACAAATCCTAGAGTATACA+AGG | - | chr5_1:7897660-7897679 | None:intergenic | 30.0% | |
| GAAAGACATTAATTTCACCT+GGG | - | chr5_1:7897997-7898016 | None:intergenic | 30.0% | |
| AGAAAGACATTAATTTCACC+TGG | - | chr5_1:7897998-7898017 | None:intergenic | 30.0% | |
| AAAGAATGATTGAGATGATG+AGG | - | chr5_1:7898045-7898064 | None:intergenic | 30.0% | |
| ATTCAGAAAGTTGACATTTC+AGG | + | chr5_1:7898069-7898088 | Msa0715020:intron | 30.0% | |
| TGAAACATTGTATGCATGAA+AGG | + | chr5_1:7898116-7898135 | Msa0715020:CDS | 30.0% | |
| ! | TCTGATTTGCGAGAATTTGA+AGG | + | chr5_1:7892232-7892251 | Msa0715020:five_prime_UTR | 35.0% |
| ATTTGCGAGAATTTGAAGGA+AGG | + | chr5_1:7892236-7892255 | Msa0715020:five_prime_UTR | 35.0% | |
| AATTTGAAGGAAGGAAGATG+TGG | + | chr5_1:7892245-7892264 | Msa0715020:exon | 35.0% | |
| !! | GTTTATTTCACTGTTTCTGG+AGG | + | chr5_1:7892607-7892626 | Msa0715020:intron | 35.0% |
| ! | TTTGCACCTGATCAAGTTTT+TGG | + | chr5_1:7892884-7892903 | Msa0715020:intron | 35.0% |
| ! | GGCCCTAAAATGATGATTTT+TGG | + | chr5_1:7892905-7892924 | Msa0715020:intron | 35.0% |
| !!! | GGACATTAATTTGCCACTTT+TGG | + | chr5_1:7892986-7893005 | Msa0715020:intron | 35.0% |
| ! | CTCCTATATGCATTGATGAA+AGG | + | chr5_1:7893155-7893174 | Msa0715020:intron | 35.0% |
| ACCCTTTCATCAATGCATAT+AGG | - | chr5_1:7893160-7893179 | None:intergenic | 35.0% | |
| GATTGAGAGTAATTCAATGG+TGG | + | chr5_1:7893193-7893212 | Msa0715020:intron | 35.0% | |
| ! | CAATTGTTTCTTAACCTCCA+GGG | - | chr5_1:7893251-7893270 | None:intergenic | 35.0% |
| ! | TCAATTGTTTCTTAACCTCC+AGG | - | chr5_1:7893252-7893271 | None:intergenic | 35.0% |
| ! | AATGGAATAATTGTGCCGAT+AGG | + | chr5_1:7893330-7893349 | Msa0715020:intron | 35.0% |
| !! | CCGCTTTTCTTAATTTTGCT+TGG | + | chr5_1:7893455-7893474 | Msa0715020:intron | 35.0% |
| ! | ATATCTTGTTTCCCATTCCA+GGG | - | chr5_1:7893654-7893673 | None:intergenic | 35.0% |
| ! | AATATCTTGTTTCCCATTCC+AGG | - | chr5_1:7893655-7893674 | None:intergenic | 35.0% |
| CTATACCTTTGCAGATTTGA+TGG | + | chr5_1:7893774-7893793 | Msa0715020:intron | 35.0% | |
| TACTATCCCGAATGAAATCT+AGG | - | chr5_1:7893809-7893828 | None:intergenic | 35.0% | |
| ! | TCATTCGGGATAGTAGTTTT+AGG | + | chr5_1:7893814-7893833 | Msa0715020:CDS | 35.0% |
| CGTTCTATGGCATTATTATC+AGG | - | chr5_1:7894036-7894055 | None:intergenic | 35.0% | |
| ! | CTAGAAACTTTTCCGTTCTA+TGG | - | chr5_1:7894049-7894068 | None:intergenic | 35.0% |
| ! | CGGAAAAGTTTCTAGAAATC+AGG | + | chr5_1:7894054-7894073 | Msa0715020:intron | 35.0% |
| TTAGCTATGAAACTAATCCC+TGG | - | chr5_1:7894092-7894111 | None:intergenic | 35.0% | |
| GCAACATGTAAATCTAGAGA+TGG | + | chr5_1:7894161-7894180 | Msa0715020:CDS | 35.0% | |
| ACATGTAAATCTAGAGATGG+AGG | + | chr5_1:7894164-7894183 | Msa0715020:CDS | 35.0% | |
| !! | TTGTAAATAGCTGTTGGTTC+TGG | + | chr5_1:7894325-7894344 | Msa0715020:intron | 35.0% |
| !! | TGTAAATAGCTGTTGGTTCT+GGG | + | chr5_1:7894326-7894345 | Msa0715020:intron | 35.0% |
| TCAAAATAATCAGTAGCGCA+TGG | - | chr5_1:7894418-7894437 | None:intergenic | 35.0% | |
| ACTCGAGAGTTTGACAATAA+TGG | - | chr5_1:7894451-7894470 | None:intergenic | 35.0% | |
| ! | ACATTGAACCACTGTCTTTT+AGG | - | chr5_1:7894628-7894647 | None:intergenic | 35.0% |
| ACATGTTAAATGACAAGCGT+TGG | + | chr5_1:7894666-7894685 | Msa0715020:intron | 35.0% | |
| GTACAAACTATTATCCTCAG+CGG | + | chr5_1:7894693-7894712 | Msa0715020:intron | 35.0% | |
| AGTTTAGTCCAACTCTAACA+AGG | + | chr5_1:7894895-7894914 | Msa0715020:intron | 35.0% | |
| GTTTAGTCCAACTCTAACAA+GGG | + | chr5_1:7894896-7894915 | Msa0715020:intron | 35.0% | |
| TTTAGTCCAACTCTAACAAG+GGG | + | chr5_1:7894897-7894916 | Msa0715020:intron | 35.0% | |
| AATAGACAATTATGGCTGGA+CGG | - | chr5_1:7894927-7894946 | None:intergenic | 35.0% | |
| CAAAAGAATATGGGGTCAAA+AGG | + | chr5_1:7895340-7895359 | Msa0715020:CDS | 35.0% | |
| AAGCCAAAGAGGAACAAAAA+AGG | + | chr5_1:7895391-7895410 | Msa0715020:CDS | 35.0% | |
| !!! | TTGCCTTTTTTGTTCCTCTT+TGG | - | chr5_1:7895397-7895416 | None:intergenic | 35.0% |
| AGAGGAACAAAAAAGGCAAA+AGG | + | chr5_1:7895398-7895417 | Msa0715020:CDS | 35.0% | |
| AGGCAAAAGGAGATAATCAA+AGG | + | chr5_1:7895411-7895430 | Msa0715020:CDS | 35.0% | |
| ACATTTCCACTTACAATTGC+AGG | - | chr5_1:7895441-7895460 | None:intergenic | 35.0% | |
| ACCAGTCAAAAAATCCTACA+CGG | - | chr5_1:7895511-7895530 | None:intergenic | 35.0% | |
| ! | TCAATATTTTCTACCGGTAG+GGG | - | chr5_1:7895655-7895674 | None:intergenic | 35.0% |
| TATATACATGCAGGGAATCA+AGG | + | chr5_1:7895778-7895797 | Msa0715020:intron | 35.0% | |
| ! | AAGCTTATTCTCGTTCTAGA+AGG | + | chr5_1:7895817-7895836 | Msa0715020:CDS | 35.0% |
| ! | TTCTGACCTTTTCAATATGC+AGG | + | chr5_1:7895919-7895938 | Msa0715020:intron | 35.0% |
| AATGTATCAACTCGAGATGT+GGG | - | chr5_1:7896125-7896144 | None:intergenic | 35.0% | |
| TAATGTATCAACTCGAGATG+TGG | - | chr5_1:7896126-7896145 | None:intergenic | 35.0% | |
| !! | CTCGAGTTGATACATTAAAC+CGG | + | chr5_1:7896129-7896148 | Msa0715020:CDS | 35.0% |
| ! | AGTTGATACATTAAACCGGT+CGG | + | chr5_1:7896133-7896152 | Msa0715020:intron | 35.0% |
| AAAGACTGTCCAATCAATCT+TGG | - | chr5_1:7896181-7896200 | None:intergenic | 35.0% | |
| GACTTTAGCACCTTTATCAA+CGG | - | chr5_1:7896476-7896495 | None:intergenic | 35.0% | |
| CACATTCACATATACACTGT+TGG | - | chr5_1:7896528-7896547 | None:intergenic | 35.0% | |
| ! | GTTTCTTTGGCATATTTCTG+TGG | - | chr5_1:7896858-7896877 | None:intergenic | 35.0% |
| TAATACTGCCATTCGATCAT+TGG | + | chr5_1:7897127-7897146 | Msa0715020:intron | 35.0% | |
| TTACAGTACCAATGATCGAA+TGG | - | chr5_1:7897138-7897157 | None:intergenic | 35.0% | |
| !! | ATCCTTTTAAGTCTCTCTTG+GGG | - | chr5_1:7897373-7897392 | None:intergenic | 35.0% |
| !! | GATCCTTTTAAGTCTCTCTT+GGG | - | chr5_1:7897374-7897393 | None:intergenic | 35.0% |
| !! | TGATCCTTTTAAGTCTCTCT+TGG | - | chr5_1:7897375-7897394 | None:intergenic | 35.0% |
| TGTGATAAAATACCTTGGTG+GGG | - | chr5_1:7897637-7897656 | None:intergenic | 35.0% | |
| GTGTGATAAAATACCTTGGT+GGG | - | chr5_1:7897638-7897657 | None:intergenic | 35.0% | |
| CAAGGTGTGATAAAATACCT+TGG | - | chr5_1:7897642-7897661 | None:intergenic | 35.0% | |
| TATCACACCTTGTATACTCT+AGG | + | chr5_1:7897650-7897669 | Msa0715020:intron | 35.0% | |
| ! | TCATAACACCTTGATGGTTA+AGG | - | chr5_1:7897706-7897725 | None:intergenic | 35.0% |
| GTTATGACTTCTCAGCAAAA+TGG | + | chr5_1:7897719-7897738 | Msa0715020:intron | 35.0% | |
| CAGCAAAATGGAATAGTGAA+TGG | + | chr5_1:7897731-7897750 | Msa0715020:intron | 35.0% | |
| AGAACTTGAGTGATATCTTC+TGG | - | chr5_1:7897881-7897900 | None:intergenic | 35.0% | |
| ! | TGTTTTCCTTCTAACCACTT+GGG | - | chr5_1:7898179-7898198 | None:intergenic | 35.0% |
| ACGACTTGAATTGATTGCAC+AGG | - | chr5_1:7892373-7892392 | None:intergenic | 40.0% | |
| GTGCAATCAATTCAAGTCGT+TGG | + | chr5_1:7892373-7892392 | Msa0715020:CDS | 40.0% | |
| TTAGGGCCAAAAACTTGATC+AGG | - | chr5_1:7892893-7892912 | None:intergenic | 40.0% | |
| ! | GGCCAAAATCACCATTTTCT+GGG | + | chr5_1:7893008-7893027 | Msa0715020:intron | 40.0% |
| ! | GCCAAAATCACCATTTTCTG+GGG | + | chr5_1:7893009-7893028 | Msa0715020:intron | 40.0% |
| ! | TCCCCAGAAAATGGTGATTT+TGG | - | chr5_1:7893013-7893032 | None:intergenic | 40.0% |
| !! | CACCATTTTCTGGGGAAAAA+AGG | + | chr5_1:7893017-7893036 | Msa0715020:intron | 40.0% |
| !!! | AGCCTTTTTTCCCCAGAAAA+TGG | - | chr5_1:7893022-7893041 | None:intergenic | 40.0% |
| TGAAAGGGTGACATGGAATT+TGG | + | chr5_1:7893171-7893190 | Msa0715020:intron | 40.0% | |
| !! | CCCATGATTTGCTAACCTAT+CGG | - | chr5_1:7893348-7893367 | None:intergenic | 40.0% |
| CCGATAGGTTAGCAAATCAT+GGG | + | chr5_1:7893345-7893364 | Msa0715020:intron | 40.0% | |
| AGTGAATCCCACTAAAAAGC+CGG | - | chr5_1:7893381-7893400 | None:intergenic | 40.0% | |
| TATTCTTGCCTGACATAGTC+GGG | - | chr5_1:7893405-7893424 | None:intergenic | 40.0% | |
| GTATTCTTGCCTGACATAGT+CGG | - | chr5_1:7893406-7893425 | None:intergenic | 40.0% | |
| CAAAATGCCAAATCCCAACT+AGG | - | chr5_1:7893512-7893531 | None:intergenic | 40.0% | |
| !! | TTTGAAGCATTGCAAGCTCT+TGG | + | chr5_1:7893528-7893547 | Msa0715020:intron | 40.0% |
| !!! | ATTTTTTCCTCAGGATACCC+TGG | + | chr5_1:7893634-7893653 | Msa0715020:intron | 40.0% |
| GTGCTCTCCTAGATTTCATT+CGG | + | chr5_1:7893799-7893818 | Msa0715020:CDS | 40.0% | |
| TGCTCTCCTAGATTTCATTC+GGG | + | chr5_1:7893800-7893819 | Msa0715020:CDS | 40.0% | |
| !! | TTAATAAAGCATCGGCGTAG+AGG | + | chr5_1:7893906-7893925 | Msa0715020:CDS | 40.0% |
| ! | ACTGTCTTTTAGGCATATCG+AGG | - | chr5_1:7894618-7894637 | None:intergenic | 40.0% |
| TCGATATGCCTAAAAGACAG+TGG | + | chr5_1:7894617-7894636 | Msa0715020:intron | 40.0% | |
| ATGAATCCAAGAGACTGATG+AGG | + | chr5_1:7894828-7894847 | Msa0715020:intron | 40.0% | |
| AACCAAAGGATCTTACTCAC+AGG | + | chr5_1:7895182-7895201 | Msa0715020:CDS | 40.0% | |
| AACCTGTGAGTAAGATCCTT+TGG | - | chr5_1:7895187-7895206 | None:intergenic | 40.0% | |
| AAAGGATCTTACTCACAGGT+TGG | + | chr5_1:7895186-7895205 | Msa0715020:CDS | 40.0% | |
| AAGGATCTTACTCACAGGTT+GGG | + | chr5_1:7895187-7895206 | Msa0715020:CDS | 40.0% | |
| ATACGACGGAAATGGTAAAG+AGG | + | chr5_1:7895215-7895234 | Msa0715020:CDS | 40.0% | |
| GATTTCAGATGACGATGATG+AGG | + | chr5_1:7895245-7895264 | Msa0715020:CDS | 40.0% | |
| AGCGATGATAGCAATGATGA+AGG | + | chr5_1:7895303-7895322 | Msa0715020:CDS | 40.0% | |
| GCGATGATAGCAATGATGAA+GGG | + | chr5_1:7895304-7895323 | Msa0715020:CDS | 40.0% | |
| TGATAGCAATGATGAAGGGA+TGG | + | chr5_1:7895308-7895327 | Msa0715020:CDS | 40.0% | |
| GAATATGGGGTCAAAAGGTA+TGG | + | chr5_1:7895345-7895364 | Msa0715020:CDS | 40.0% | |
| !! | GTATGGTTGGCTTGTTTACA+TGG | + | chr5_1:7895362-7895381 | Msa0715020:CDS | 40.0% |
| CATGGATAAGAAAGCCAAAG+AGG | + | chr5_1:7895380-7895399 | Msa0715020:CDS | 40.0% | |
| !!! | ACCGTGTAGGATTTTTTGAC+TGG | + | chr5_1:7895507-7895526 | Msa0715020:intron | 40.0% |
| AACTGAGTCGTAAGGAAAGA+AGG | + | chr5_1:7895555-7895574 | Msa0715020:CDS | 40.0% | |
| TCTCTCTCTTTCAACTTGAG+AGG | - | chr5_1:7895585-7895604 | None:intergenic | 40.0% | |
| CGAGAATAAGCTTCGTAAGT+AGG | - | chr5_1:7895810-7895829 | None:intergenic | 40.0% | |
| CCTTGACCTGCATATTGAAA+AGG | - | chr5_1:7895928-7895947 | None:intergenic | 40.0% | |
| ! | CCTTTTCAATATGCAGGTCA+AGG | + | chr5_1:7895925-7895944 | Msa0715020:intron | 40.0% |
| !! | TAGGAGTCTTTGGTTTGCTT+CGG | - | chr5_1:7896022-7896041 | None:intergenic | 40.0% |
| AGATCATGACTAGGATTGTC+AGG | + | chr5_1:7896260-7896279 | Msa0715020:intron | 40.0% | |
| GATCATGACTAGGATTGTCA+GGG | + | chr5_1:7896261-7896280 | Msa0715020:intron | 40.0% | |
| TGATACCTCTACTGTATTGC+AGG | + | chr5_1:7896395-7896414 | Msa0715020:intron | 40.0% | |
| ! | TCTGGTGTATCCGTTGATAA+AGG | + | chr5_1:7896463-7896482 | Msa0715020:CDS | 40.0% |
| ! | TTGGGTGATGGTATACCTTA+CGG | - | chr5_1:7896509-7896528 | None:intergenic | 40.0% |
| ACATATACACTGTTGGGTGA+TGG | - | chr5_1:7896521-7896540 | None:intergenic | 40.0% | |
| GTGGTTTCATCTGTTAGGAA+TGG | + | chr5_1:7896571-7896590 | Msa0715020:intron | 40.0% | |
| !!! | GAGGGAACTTGTTTGTTTTG+TGG | - | chr5_1:7896761-7896780 | None:intergenic | 40.0% |
| TGGCAGAGGAGACAATTTAT+CGG | - | chr5_1:7896803-7896822 | None:intergenic | 40.0% | |
| GCTATCTGAGTATCTGACAT+TGG | - | chr5_1:7896823-7896842 | None:intergenic | 40.0% | |
| CTCAGCACTAGCAAAGTTAA+AGG | + | chr5_1:7897294-7897313 | Msa0715020:CDS | 40.0% | |
| CTAGCAAAGTTAAAGGCAAG+TGG | + | chr5_1:7897301-7897320 | Msa0715020:CDS | 40.0% | |
| AAGTTAAAGGCAAGTGGTTC+TGG | + | chr5_1:7897307-7897326 | Msa0715020:CDS | 40.0% | |
| ACAAGCCAAGAAAAGAGAAC+AGG | + | chr5_1:7897527-7897546 | Msa0715020:CDS | 40.0% | |
| CTGAAACTAGTCGATTGAGT+AGG | + | chr5_1:7897574-7897593 | Msa0715020:CDS | 40.0% | |
| CTAGTCGATTGAGTAGGTAT+AGG | + | chr5_1:7897580-7897599 | Msa0715020:CDS | 40.0% | |
| GGTGTGATAAAATACCTTGG+TGG | - | chr5_1:7897639-7897658 | None:intergenic | 40.0% | |
| TTGGAACACCTTAACCATCA+AGG | + | chr5_1:7897695-7897714 | Msa0715020:intron | 40.0% | |
| GAGAAGTCATAACACCTTGA+TGG | - | chr5_1:7897712-7897731 | None:intergenic | 40.0% | |
| ACCAGAGGAAAACAAAGCAA+GGG | - | chr5_1:7897791-7897810 | None:intergenic | 40.0% | |
| AACCAGAGGAAAACAAAGCA+AGG | - | chr5_1:7897792-7897811 | None:intergenic | 40.0% | |
| ! | TGATTAACTGCAGAAGGTAC+AGG | + | chr5_1:7897824-7897843 | Msa0715020:intron | 40.0% |
| TAGAAGTCCAAGTAGAAGCA+GGG | + | chr5_1:7897852-7897871 | Msa0715020:CDS | 40.0% | |
| TGTTTCATCAGTGCCTTGAA+CGG | - | chr5_1:7898103-7898122 | None:intergenic | 40.0% | |
| GTTTACATATTGCTCCCAAG+TGG | + | chr5_1:7898162-7898181 | Msa0715020:CDS | 40.0% | |
| ! | GTGTTTTCCTTCTAACCACT+TGG | - | chr5_1:7898180-7898199 | None:intergenic | 40.0% |
| GAAGAAGGTCCATGACATGA+TGG | + | chr5_1:7892288-7892307 | Msa0715020:CDS | 45.0% | |
| ! | GCGACGTTTTGCAAGGTAAA+CGG | - | chr5_1:7892344-7892363 | None:intergenic | 45.0% |
| GTTTACCTTGCAAAACGTCG+CGG | + | chr5_1:7892343-7892362 | Msa0715020:CDS | 45.0% | |
| CAATCCTTGTTGATCTTCGG+TGG | - | chr5_1:7892440-7892459 | None:intergenic | 45.0% | |
| !! | TGGTGATTTTGGCCCAAAAG+TGG | - | chr5_1:7893002-7893021 | None:intergenic | 45.0% |
| ! | GGGCCAAAATCACCATTTTC+TGG | + | chr5_1:7893007-7893026 | Msa0715020:intron | 45.0% |
| ! | GCATTGATGAAAGGGTGACA+TGG | + | chr5_1:7893164-7893183 | Msa0715020:intron | 45.0% |
| GTTTCTTAACCTCCAGGGTA+TGG | - | chr5_1:7893246-7893265 | None:intergenic | 45.0% | |
| GCCGATAGGTTAGCAAATCA+TGG | + | chr5_1:7893344-7893363 | Msa0715020:intron | 45.0% | |
| AATCATGGGCATTCCTTGTC+CGG | + | chr5_1:7893359-7893378 | Msa0715020:intron | 45.0% | |
| ! | TTCCTTGTCCGGCTTTTTAG+TGG | + | chr5_1:7893370-7893389 | Msa0715020:intron | 45.0% |
| !! | TCCTTGTCCGGCTTTTTAGT+GGG | + | chr5_1:7893371-7893390 | Msa0715020:intron | 45.0% |
| ATTCACTTCCCGACTATGTC+AGG | + | chr5_1:7893394-7893413 | Msa0715020:intron | 45.0% | |
| TTCCTCCGTCCTTTCTCTTT+GGG | + | chr5_1:7893479-7893498 | Msa0715020:intron | 45.0% | |
| ! | TTTGGGGTGCAAACCTAGTT+GGG | + | chr5_1:7893496-7893515 | Msa0715020:intron | 45.0% |
| GTGCAAACCTAGTTGGGATT+TGG | + | chr5_1:7893502-7893521 | Msa0715020:intron | 45.0% | |
| !!! | TAGTAGTTTTAGGCGTGTCC+AGG | + | chr5_1:7893824-7893843 | Msa0715020:CDS | 45.0% |
| TGTCCAGGAAAAGTCTGAAG+AGG | + | chr5_1:7893839-7893858 | Msa0715020:CDS | 45.0% | |
| ! | CTTCCTCTTCAGACTTTTCC+TGG | - | chr5_1:7893845-7893864 | None:intergenic | 45.0% |
| GAAACTAATCCCTGGATGTC+AGG | - | chr5_1:7894084-7894103 | None:intergenic | 45.0% | |
| AATGGTAACAGTTACCGACG+AGG | + | chr5_1:7894131-7894150 | Msa0715020:intron | 45.0% | |
| AAATCTAGAGATGGAGGCCA+AGG | + | chr5_1:7894170-7894189 | Msa0715020:CDS | 45.0% | |
| TCCATTTGCATCAGACAGGT+TGG | + | chr5_1:7894200-7894219 | Msa0715020:intron | 45.0% | |
| CCATTTGCATCAGACAGGTT+GGG | + | chr5_1:7894201-7894220 | Msa0715020:intron | 45.0% | |
| GTCGCGTTAACTCAATTCTG+AGG | - | chr5_1:7894509-7894528 | None:intergenic | 45.0% | |
| CATTCACCTCATCAGTCTCT+TGG | - | chr5_1:7894837-7894856 | None:intergenic | 45.0% | |
| GATTCTTGCATGGTCTGAAC+TGG | + | chr5_1:7895040-7895059 | Msa0715020:intron | 45.0% | |
| TAAGATCCTTTGGTTGCAGC+AGG | - | chr5_1:7895177-7895196 | None:intergenic | 45.0% | |
| !! | CAGGTTGGGTTTTCATACGA+CGG | + | chr5_1:7895201-7895220 | Msa0715020:CDS | 45.0% |
| ! | GGGTTTTCATACGACGGAAA+TGG | + | chr5_1:7895207-7895226 | Msa0715020:CDS | 45.0% |
| ! | ATGGGGTCAAAAGGTATGGT+TGG | + | chr5_1:7895349-7895368 | Msa0715020:CDS | 45.0% |
| GGTGATCCTGCAATTGTAAG+TGG | + | chr5_1:7895432-7895451 | Msa0715020:intron | 45.0% | |
| GTAGAGGAAACTGAGTCGTA+AGG | + | chr5_1:7895547-7895566 | Msa0715020:intron | 45.0% | |
| GAGTCGTAAGGAAAGAAGGA+AGG | + | chr5_1:7895559-7895578 | Msa0715020:CDS | 45.0% | |
| ATTGTGCTCCCACTGACAAA+TGG | + | chr5_1:7895712-7895731 | Msa0715020:intron | 45.0% | |
| TCCCACTGACAAATGGATAG+CGG | + | chr5_1:7895719-7895738 | Msa0715020:intron | 45.0% | |
| TCCGCTATCCATTTGTCAGT+GGG | - | chr5_1:7895723-7895742 | None:intergenic | 45.0% | |
| ATCCGCTATCCATTTGTCAG+TGG | - | chr5_1:7895724-7895743 | None:intergenic | 45.0% | |
| GGATAACGCATATGTGCTCA+AGG | - | chr5_1:7895858-7895877 | None:intergenic | 45.0% | |
| AATAACGCCTTGCATAGGAC+GGG | - | chr5_1:7895971-7895990 | None:intergenic | 45.0% | |
| GAATAACGCCTTGCATAGGA+CGG | - | chr5_1:7895972-7895991 | None:intergenic | 45.0% | |
| ! | CCTATGCAAGGCGTTATTCA+CGG | + | chr5_1:7895973-7895992 | Msa0715020:CDS | 45.0% |
| ATAACTGAATTTGGGGGCTC+TGG | + | chr5_1:7896053-7896072 | Msa0715020:CDS | 45.0% | |
| GGGAACATTGAGCTCCAAAT+AGG | - | chr5_1:7896317-7896336 | None:intergenic | 45.0% | |
| GATGACCTGCAATACAGTAG+AGG | - | chr5_1:7896403-7896422 | None:intergenic | 45.0% | |
| CTGTATTGCAGGTCATCATC+TGG | + | chr5_1:7896406-7896425 | Msa0715020:intron | 45.0% | |
| ! | TGGGTGATGGTATACCTTAC+GGG | - | chr5_1:7896508-7896527 | None:intergenic | 45.0% |
| ! | ATTTGCACGAGCTTAGCTCT+GGG | - | chr5_1:7896722-7896741 | None:intergenic | 45.0% |
| GGCAGAGGAGACAATTTATC+GGG | - | chr5_1:7896802-7896821 | None:intergenic | 45.0% | |
| TGAGTATCTGACATTGGCAG+AGG | - | chr5_1:7896817-7896836 | None:intergenic | 45.0% | |
| GCAAAAGAATCAACCAGCTG+TGG | - | chr5_1:7896964-7896983 | None:intergenic | 45.0% | |
| AGAATACTGAGCCCTGCATT+TGG | - | chr5_1:7897026-7897045 | None:intergenic | 45.0% | |
| !! | TTAAAGGCAAGTGGTTCTGG+AGG | + | chr5_1:7897310-7897329 | Msa0715020:CDS | 45.0% |
| !! | TAAAGGCAAGTGGTTCTGGA+GGG | + | chr5_1:7897311-7897330 | Msa0715020:CDS | 45.0% |
| GGCTCTTAAAACCTCAACCA+GGG | + | chr5_1:7897332-7897351 | Msa0715020:CDS | 45.0% | |
| GCTCTTAAAACCTCAACCAG+GGG | + | chr5_1:7897333-7897352 | Msa0715020:CDS | 45.0% | |
| ! | TCTTTCTTTTCCCCTGGTTG+AGG | - | chr5_1:7897346-7897365 | None:intergenic | 45.0% |
| ! | GGTGTTTCTTTCTTTTCCCC+TGG | - | chr5_1:7897352-7897371 | None:intergenic | 45.0% |
| CACCCCAAGAGAGACTTAAA+AGG | + | chr5_1:7897368-7897387 | Msa0715020:CDS | 45.0% | |
| ! | TCGCTCCTGTTCTCTTTTCT+TGG | - | chr5_1:7897535-7897554 | None:intergenic | 45.0% |
| GTAGAAGTCCAAGTAGAAGC+AGG | + | chr5_1:7897851-7897870 | Msa0715020:CDS | 45.0% | |
| AGAAGTCCAAGTAGAAGCAG+GGG | + | chr5_1:7897853-7897872 | Msa0715020:CDS | 45.0% | |
| ! | TTTCTTTTCCTGTGCCTCAG+AGG | + | chr5_1:7898013-7898032 | Msa0715020:intron | 45.0% |
| TGATGAGGAGTAAACCTCTG+AGG | - | chr5_1:7898030-7898049 | None:intergenic | 45.0% | |
| TCAGGCTAAGAAACCGTTCA+AGG | + | chr5_1:7898087-7898106 | Msa0715020:CDS | 45.0% | |
| ATTGCTCCCAAGTGGTTAGA+AGG | + | chr5_1:7898170-7898189 | Msa0715020:CDS | 45.0% | |
| !!! | ATTATTATGTTTTTTTTTAA+AGG | - | chr5_1:7896899-7896918 | None:intergenic | 5.0% |
| AGGAAGGAAGATGTGGCATG+AGG | + | chr5_1:7892252-7892271 | Msa0715020:exon | 50.0% | |
| AGATGTGGCATGAGGCAAGA+AGG | + | chr5_1:7892260-7892279 | Msa0715020:exon | 50.0% | |
| CAAGCCACCGAAGATCAACA+AGG | + | chr5_1:7892433-7892452 | Msa0715020:CDS | 50.0% | |
| TCCCACTAAAAAGCCGGACA+AGG | - | chr5_1:7893375-7893394 | None:intergenic | 50.0% | |
| GTTCCTCCGTCCTTTCTCTT+TGG | + | chr5_1:7893478-7893497 | Msa0715020:intron | 50.0% | |
| TCCTCCGTCCTTTCTCTTTG+GGG | + | chr5_1:7893480-7893499 | Msa0715020:intron | 50.0% | |
| TGCACCCCAAAGAGAAAGGA+CGG | - | chr5_1:7893487-7893506 | None:intergenic | 50.0% | |
| GGTTTGCACCCCAAAGAGAA+AGG | - | chr5_1:7893491-7893510 | None:intergenic | 50.0% | |
| !! | CTTTGGGGTGCAAACCTAGT+TGG | + | chr5_1:7893495-7893514 | Msa0715020:intron | 50.0% |
| TTCCTCAGGATACCCTGGAA+TGG | + | chr5_1:7893639-7893658 | Msa0715020:intron | 50.0% | |
| TCCTCAGGATACCCTGGAAT+GGG | + | chr5_1:7893640-7893659 | Msa0715020:intron | 50.0% | |
| CACGCCCATCAAATCTGCAA+AGG | - | chr5_1:7893782-7893801 | None:intergenic | 50.0% | |
| CTAATCCCTGGATGTCAGGT+TGG | - | chr5_1:7894080-7894099 | None:intergenic | 50.0% | |
| ! | ATGTTGCAAAGCGTCCTCGT+CGG | - | chr5_1:7894148-7894167 | None:intergenic | 50.0% |
| CTGCTCCATTTGCATCAGAC+AGG | + | chr5_1:7894196-7894215 | Msa0715020:CDS | 50.0% | |
| CCCAACCTGTCTGATGCAAA+TGG | - | chr5_1:7894204-7894223 | None:intergenic | 50.0% | |
| GGAGTTCCCCTTGTTAGAGT+TGG | - | chr5_1:7894906-7894925 | None:intergenic | 50.0% | |
| TGAGGAAGACGAAGATGACG+AGG | + | chr5_1:7895263-7895282 | Msa0715020:CDS | 50.0% | |
| CGAAGATGACGAGGATGATG+AGG | + | chr5_1:7895272-7895291 | Msa0715020:CDS | 50.0% | |
| AGAGAGAGCGAGAAGCTACA+CGG | + | chr5_1:7895600-7895619 | Msa0715020:CDS | 50.0% | |
| TGATGTAGCACACGAGTTCC+AGG | - | chr5_1:7895629-7895648 | None:intergenic | 50.0% | |
| TGGAACTCGTGTGCTACATC+AGG | + | chr5_1:7895628-7895647 | Msa0715020:CDS | 50.0% | |
| ATAACGCCTTGCATAGGACG+GGG | - | chr5_1:7895970-7895989 | None:intergenic | 50.0% | |
| CCGTGAATAACGCCTTGCAT+AGG | - | chr5_1:7895976-7895995 | None:intergenic | 50.0% | |
| CTGGAGAAGCAGATGGAACT+AGG | + | chr5_1:7896072-7896091 | Msa0715020:CDS | 50.0% | |
| GATGGAGGAGGCTTCCTATT+TGG | + | chr5_1:7896300-7896319 | Msa0715020:intron | 50.0% | |
| TTGCATGTCGATCCTGCTTC+TGG | + | chr5_1:7896445-7896464 | Msa0715020:CDS | 50.0% | |
| TCAACGGATACACCAGAAGC+AGG | - | chr5_1:7896460-7896479 | None:intergenic | 50.0% | |
| AAGTCTTGAAGCCACCCGTA+AGG | + | chr5_1:7896491-7896510 | Msa0715020:CDS | 50.0% | |
| GTGATGGTATACCTTACGGG+TGG | - | chr5_1:7896505-7896524 | None:intergenic | 50.0% | |
| !! | GCTCTGGGGATTGATGTGTA+CGG | - | chr5_1:7896707-7896726 | None:intergenic | 50.0% |
| !! | TTTGCACGAGCTTAGCTCTG+GGG | - | chr5_1:7896721-7896740 | None:intergenic | 50.0% |
| CATTTGCACGAGCTTAGCTC+TGG | - | chr5_1:7896723-7896742 | None:intergenic | 50.0% | |
| CACGAGGAGATGTGGGATAA+TGG | - | chr5_1:7896988-7897007 | None:intergenic | 50.0% | |
| CTGTGTACACGAGGAGATGT+GGG | - | chr5_1:7896995-7897014 | None:intergenic | 50.0% | |
| ACAGCACACTCTCCAAATGC+AGG | + | chr5_1:7897011-7897030 | Msa0715020:intron | 50.0% | |
| CAGCACACTCTCCAAATGCA+GGG | + | chr5_1:7897012-7897031 | Msa0715020:intron | 50.0% | |
| ! | CTTTTCCACAGCACAGCTTC+AGG | + | chr5_1:7897271-7897290 | Msa0715020:intron | 50.0% |
| GGGCTCTTAAAACCTCAACC+AGG | + | chr5_1:7897331-7897350 | Msa0715020:CDS | 50.0% | |
| AAAGAGAACAGGAGCGACAG+AGG | + | chr5_1:7897538-7897557 | Msa0715020:CDS | 50.0% | |
| AACGACTGTAACTCCTGCTG+CGG | - | chr5_1:7897614-7897633 | None:intergenic | 50.0% | |
| !!! | GCCCTTGCTTTGTTTTCCTC+TGG | + | chr5_1:7897787-7897806 | Msa0715020:intron | 50.0% |
| ! | TAAGGAGAGCGTGAACGATG+CGG | - | chr5_1:7897964-7897983 | None:intergenic | 50.0% |
| CTCCTTATTCTCGTTCTCCC+AGG | + | chr5_1:7897977-7897996 | Msa0715020:CDS | 50.0% | |
| CACCTGGGAGAACGAGAATA+AGG | - | chr5_1:7897982-7898001 | None:intergenic | 50.0% | |
| GTGGCATGAGGCAAGAAGGT+CGG | + | chr5_1:7892264-7892283 | Msa0715020:CDS | 55.0% | |
| GGCAAGAAGGTCGGAGAAGA+AGG | + | chr5_1:7892273-7892292 | Msa0715020:CDS | 55.0% | |
| GAGCAGCGTCCATCATGTCA+TGG | - | chr5_1:7892300-7892319 | None:intergenic | 55.0% | |
| ! | GATCACCGCGACGTTTTGCA+AGG | - | chr5_1:7892351-7892370 | None:intergenic | 55.0% |
| CAAACTCTGCTGCCATACCC+TGG | + | chr5_1:7893231-7893250 | Msa0715020:intron | 55.0% | |
| ACCCCAAAGAGAAAGGACGG+AGG | - | chr5_1:7893484-7893503 | None:intergenic | 55.0% | |
| ! | TCCCATTCCAGGGTATCCTG+AGG | - | chr5_1:7893644-7893663 | None:intergenic | 55.0% |
| !! | AGCATCGGCGTAGAGGATGT+CGG | + | chr5_1:7893913-7893932 | Msa0715020:intron | 55.0% |
| ATCAGGCCAACCTGACATCC+AGG | + | chr5_1:7894071-7894090 | Msa0715020:intron | 55.0% | |
| TCAGGCCAACCTGACATCCA+GGG | + | chr5_1:7894072-7894091 | Msa0715020:intron | 55.0% | |
| TGCAAATGGAGCAGCAGCCT+TGG | - | chr5_1:7894190-7894209 | None:intergenic | 55.0% | |
| TCACAGCCTGCTGCAACCAA+AGG | + | chr5_1:7895168-7895187 | Msa0715020:CDS | 55.0% | |
| CGAGAAGCTACACGGATACC+TGG | + | chr5_1:7895608-7895627 | Msa0715020:CDS | 55.0% | |
| TGCTACATCAGGACCCCTAC+CGG | + | chr5_1:7895639-7895658 | Msa0715020:CDS | 55.0% | |
| GCAGGTCAAGGTCCAGATCA+CGG | + | chr5_1:7895937-7895956 | Msa0715020:intron | 55.0% | |
| GCAGATGGAACTAGGCGTGA+AGG | + | chr5_1:7896080-7896099 | Msa0715020:CDS | 55.0% | |
| ACTCGAGATGTGGGAGATCG+CGG | - | chr5_1:7896116-7896135 | None:intergenic | 55.0% | |
| CATTAAACCGGTCGGAGCAC+TGG | + | chr5_1:7896141-7896160 | Msa0715020:intron | 55.0% | |
| TAAAGGTCCAGTGCTCCGAC+CGG | - | chr5_1:7896151-7896170 | None:intergenic | 55.0% | |
| TTGTCAGGGTAGCTGCCAAG+AGG | + | chr5_1:7896275-7896294 | Msa0715020:intron | 55.0% | |
| GGTAGCTGCCAAGAGGAAGA+TGG | + | chr5_1:7896282-7896301 | Msa0715020:intron | 55.0% | |
| AGCTGCCAAGAGGAAGATGG+AGG | + | chr5_1:7896285-7896304 | Msa0715020:intron | 55.0% | |
| TGCCAAGAGGAAGATGGAGG+AGG | + | chr5_1:7896288-7896307 | Msa0715020:intron | 55.0% | |
| AGCCTCCTCCATCTTCCTCT+TGG | - | chr5_1:7896293-7896312 | None:intergenic | 55.0% | |
| TGTGGACATGTCAGCCAAGG+GGG | - | chr5_1:7896946-7896965 | None:intergenic | 55.0% | |
| CTGTGGACATGTCAGCCAAG+GGG | - | chr5_1:7896947-7896966 | None:intergenic | 55.0% | |
| GCTGTGGACATGTCAGCCAA+GGG | - | chr5_1:7896948-7896967 | None:intergenic | 55.0% | |
| AGCTGTGGACATGTCAGCCA+AGG | - | chr5_1:7896949-7896968 | None:intergenic | 55.0% | |
| TTGGCTGACATGTCCACAGC+TGG | + | chr5_1:7896948-7896967 | Msa0715020:intron | 55.0% | |
| GCTGTGTACACGAGGAGATG+TGG | - | chr5_1:7896996-7897015 | None:intergenic | 55.0% | |
| ! | GAGAGTGTGCTGTGTACACG+AGG | - | chr5_1:7897004-7897023 | None:intergenic | 55.0% |
| GTTACAGTCGTTCCCCACCA+AGG | + | chr5_1:7897622-7897641 | Msa0715020:CDS | 55.0% | |
| CTGGAACCCCTGCTTCTACT+TGG | - | chr5_1:7897862-7897881 | None:intergenic | 55.0% | |
| CAAGTTCTCGCTCCCGTTCT+CGG | + | chr5_1:7897893-7897912 | Msa0715020:CDS | 55.0% | |
| TGCGATTAGGGGACCGAGAA+CGG | - | chr5_1:7897909-7897928 | None:intergenic | 55.0% | |
| ACCGAGAACGGGTGCGATTA+GGG | - | chr5_1:7897921-7897940 | None:intergenic | 55.0% | |
| !! | GGAGTAAACCTCTGAGGCAC+AGG | - | chr5_1:7898024-7898043 | None:intergenic | 55.0% |
| GTATGCATGAAAGGCCAGCG+AGG | + | chr5_1:7898125-7898144 | Msa0715020:CDS | 55.0% | |
| AGATTGCACACAAGCCTCGC+TGG | - | chr5_1:7898142-7898161 | None:intergenic | 55.0% | |
| ACTCTGCTGCCATACCCTGG+AGG | + | chr5_1:7893234-7893253 | Msa0715020:intron | 60.0% | |
| GGAGTCGAGTGTTACCGCTG+AGG | - | chr5_1:7894710-7894729 | None:intergenic | 60.0% | |
| CCTTGCATAGGACGGGGAGT+AGG | - | chr5_1:7895964-7895983 | None:intergenic | 60.0% | |
| CCTACTCCCCGTCCTATGCA+AGG | + | chr5_1:7895961-7895980 | Msa0715020:CDS | 60.0% | |
| GTGGACATGTCAGCCAAGGG+GGG | - | chr5_1:7896945-7896964 | None:intergenic | 60.0% | |
| CTGAGCCTGAAGCTGTGCTG+TGG | - | chr5_1:7897279-7897298 | None:intergenic | 60.0% | |
| GCGATTAGGGGACCGAGAAC+GGG | - | chr5_1:7897908-7897927 | None:intergenic | 60.0% | |
| CCGAGAACGGGTGCGATTAG+GGG | - | chr5_1:7897920-7897939 | None:intergenic | 60.0% | |
| CCCCTAATCGCACCCGTTCT+CGG | + | chr5_1:7897917-7897936 | Msa0715020:CDS | 60.0% | |
| GACCGAGAACGGGTGCGATT+AGG | - | chr5_1:7897922-7897941 | None:intergenic | 60.0% | |
| TGCGAGAAGGGGACCGAGAA+CGG | - | chr5_1:7897933-7897952 | None:intergenic | 60.0% | |
| CGGAGAACGAGTGCGAGAAG+GGG | - | chr5_1:7897944-7897963 | None:intergenic | 60.0% | |
| GCGGAGAACGAGTGCGAGAA+GGG | - | chr5_1:7897945-7897964 | None:intergenic | 60.0% | |
| TGCGGAGAACGAGTGCGAGA+AGG | - | chr5_1:7897946-7897965 | None:intergenic | 60.0% | |
| CGGGGAGTAGGACCGTGATC+TGG | - | chr5_1:7895952-7895971 | None:intergenic | 65.0% | |
| !! | GGGGGCTCTGGAGAAGCAGA+TGG | + | chr5_1:7896065-7896084 | Msa0715020:CDS | 65.0% |
| CGAGATGTGGGAGATCGCGG+TGG | - | chr5_1:7896113-7896132 | None:intergenic | 65.0% | |
| CCAAGGGGGGTCAGCTGGTA+AGG | - | chr5_1:7896932-7896951 | None:intergenic | 65.0% | |
| CCTTACCAGCTGACCCCCCT+TGG | + | chr5_1:7896929-7896948 | Msa0715020:intron | 65.0% | |
| GCGAGAAGGGGACCGAGAAC+GGG | - | chr5_1:7897932-7897951 | None:intergenic | 65.0% | |
| GTCAGCCAAGGGGGGTCAGC+TGG | - | chr5_1:7896937-7896956 | None:intergenic | 70.0% | |
| ! | ATAGGCGTCGCAGCCGCAGC+AGG | + | chr5_1:7897598-7897617 | Msa0715020:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7892197 | 7898210 | 7892197 | ID=Msa0715020;Name=Msa0715020 |
| chr5_1 | mRNA | 7892197 | 7898210 | 7892197 | ID=Msa0715020-mRNA-1;Parent=Msa0715020;Name=Msa0715020-mRNA-1;_AED=0.19;_eAED=0.20;_QI=65|0.91|0.92|1|1|1|13|0|593 |
| chr5_1 | exon | 7892197 | 7892458 | 7892197 | ID=Msa0715020-mRNA-1:exon:3282;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7893647 | 7893685 | 7893647 | ID=Msa0715020-mRNA-1:exon:3283;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7893788 | 7893930 | 7893788 | ID=Msa0715020-mRNA-1:exon:3284;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7894142 | 7894217 | 7894142 | ID=Msa0715020-mRNA-1:exon:3285;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7895158 | 7895446 | 7895158 | ID=Msa0715020-mRNA-1:exon:3286;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7895551 | 7895660 | 7895551 | ID=Msa0715020-mRNA-1:exon:3287;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7895791 | 7895838 | 7895791 | ID=Msa0715020-mRNA-1:exon:3288;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7895941 | 7896150 | 7895941 | ID=Msa0715020-mRNA-1:exon:3289;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7896417 | 7896512 | 7896417 | ID=Msa0715020-mRNA-1:exon:3290;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7897282 | 7897418 | 7897282 | ID=Msa0715020-mRNA-1:exon:3291;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7897505 | 7897643 | 7897505 | ID=Msa0715020-mRNA-1:exon:3292;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7897837 | 7897998 | 7897837 | ID=Msa0715020-mRNA-1:exon:3293;Parent=Msa0715020-mRNA-1 |
| chr5_1 | exon | 7898075 | 7898210 | 7898075 | ID=Msa0715020-mRNA-1:exon:3294;Parent=Msa0715020-mRNA-1 |
| chr5_1 | five_prime_UTR | 7892197 | 7892261 | 7892197 | ID=Msa0715020-mRNA-1:five_prime_utr;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7892262 | 7892458 | 7892262 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7893647 | 7893685 | 7893647 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7893788 | 7893930 | 7893788 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7894142 | 7894217 | 7894142 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7895158 | 7895446 | 7895158 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7895551 | 7895660 | 7895551 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7895791 | 7895838 | 7895791 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7895941 | 7896150 | 7895941 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7896417 | 7896512 | 7896417 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7897282 | 7897418 | 7897282 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7897505 | 7897643 | 7897505 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7897837 | 7897998 | 7897837 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| chr5_1 | CDS | 7898075 | 7898210 | 7898075 | ID=Msa0715020-mRNA-1:cds;Parent=Msa0715020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
