Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756990 | sp|Q8N2M8|CLASR_HUMAN | 38.849 | 139 | 85 | 0 | 1 | 139 | 1 | 139 | 8.61e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756990 | G7K6P7 | 96.115 | 592 | 15 | 1 | 1 | 584 | 1 | 592 | 0.0 | 1145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034110 | Msa0756990 | 0.829817 | 4.162728e-55 | -8.615850e-47 |
| Msa0091460 | Msa0756990 | 0.813700 | 2.241615e-51 | -8.615850e-47 |
| Msa0115540 | Msa0756990 | 0.834550 | 2.808509e-56 | -8.615850e-47 |
| Msa0621140 | Msa0756990 | 0.806700 | 7.243173e-50 | -8.615850e-47 |
| Msa0642730 | Msa0756990 | 0.842860 | 1.997613e-58 | -8.615850e-47 |
| Msa0689250 | Msa0756990 | 0.837456 | 5.143716e-57 | -8.615850e-47 |
| Msa0711450 | Msa0756990 | 0.822408 | 2.407435e-53 | -8.615850e-47 |
| Msa0715020 | Msa0756990 | 0.897790 | 9.988399e-77 | -8.615850e-47 |
| Msa0722630 | Msa0756990 | 0.813681 | 2.263058e-51 | -8.615850e-47 |
| Msa0756990 | Msa0790600 | 0.845720 | 3.404983e-59 | -8.615850e-47 |
| Msa0756990 | Msa0797990 | 0.859557 | 3.809922e-63 | -8.615850e-47 |
| Msa0756990 | Msa0799970 | 0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0756990 | Msa0805960 | 0.814276 | 1.672822e-51 | -8.615850e-47 |
| Msa0756990 | Msa0836610 | 0.930098 | 2.685008e-93 | -8.615850e-47 |
| Msa0756990 | Msa0909740 | 0.809778 | 1.599303e-50 | -8.615850e-47 |
| Msa0756990 | Msa1232700 | 0.803227 | 3.854124e-49 | -8.615850e-47 |
| Msa0756990 | Msa1392790 | 0.822311 | 2.535554e-53 | -8.615850e-47 |
| Msa0756990 | Msa1448560 | 0.826133 | 3.206016e-54 | -8.615850e-47 |
| Msa0756990 | Msa1460050 | 0.817277 | 3.585085e-52 | -8.615850e-47 |
| Msa0174110 | Msa0756990 | 0.810161 | 1.322810e-50 | -8.615850e-47 |
| Msa0188900 | Msa0756990 | 0.831580 | 1.539785e-55 | -8.615850e-47 |
| Msa0204770 | Msa0756990 | 0.829656 | 4.556379e-55 | -8.615850e-47 |
| Msa0231370 | Msa0756990 | 0.834034 | 3.785045e-56 | -8.615850e-47 |
| Msa0402260 | Msa0756990 | 0.822692 | 2.067199e-53 | -8.615850e-47 |
| Msa0246070 | Msa0756990 | 0.829412 | 5.224170e-55 | -8.615850e-47 |
| Msa0270650 | Msa0756990 | 0.827045 | 1.943003e-54 | -8.615850e-47 |
| Msa0328390 | Msa0756990 | 0.809811 | 1.573576e-50 | -8.615850e-47 |
| Msa0355200 | Msa0756990 | 0.826281 | 2.955920e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756990 | MtrunA17_Chr5g0402261 | 96.903 | 549 | 9 | 1 | 1 | 541 | 1 | 549 | 0.0 | 1058 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756990 | AT4G36980.2 | 70.625 | 480 | 129 | 6 | 1 | 474 | 1 | 474 | 0.0 | 544 |
| Msa0756990 | AT4G36980.4 | 70.625 | 480 | 129 | 6 | 1 | 474 | 1 | 474 | 0.0 | 543 |
| Msa0756990 | AT4G36980.1 | 70.625 | 480 | 129 | 6 | 1 | 474 | 1 | 474 | 0.0 | 543 |
| Msa0756990 | AT4G36980.3 | 70.625 | 480 | 128 | 7 | 1 | 474 | 1 | 473 | 0.0 | 539 |
Find 152 sgRNAs with CRISPR-Local
Find 454 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAATACATAACTGAATT+TGG | 0.161027 | 5_2:-11639478 | Msa0756990:CDS |
| ATTCAGAAAGTTGACATTTC+AGG | 0.223226 | 5_2:-11637432 | Msa0756990:intron |
| GAGATAATTGCAAAAGAATA+TGG | 0.223621 | 5_2:-11640192 | Msa0756990:CDS |
| AAGTTAAAGGCAAGTGGTTC+TGG | 0.286261 | 5_2:-11638170 | Msa0756990:CDS |
| CAAGTTCTCGCTCCCGTTCT+CGG | 0.286578 | 5_2:-11637584 | Msa0756990:CDS |
| CTCAGCACTAGCAAAGTTAA+AGG | 0.294524 | 5_2:-11638183 | Msa0756990:CDS |
| TAGAATACATAACTGAATTT+GGG | 0.302082 | 5_2:-11639477 | Msa0756990:CDS |
| AACTATCGAAATCAAAATTA+GGG | 0.306989 | 5_2:-11643331 | Msa0756990:intron |
| CTGGAACCCCTGCTTCTACT+TGG | 0.333387 | 5_2:+11637618 | None:intergenic |
| ACATTTCCACTTACAATTGC+AGG | 0.337629 | 5_2:+11640084 | None:intergenic |
| AATATCTTGTTTCCCATTCC+AGG | 0.340245 | 5_2:+11641869 | None:intergenic |
| CTATACCTTTGCAGATTTGA+TGG | 0.357306 | 5_2:-11641747 | Msa0756990:intron |
| CACCTGGGAGAACGAGAATA+AGG | 0.360202 | 5_2:+11637522 | None:intergenic |
| CACCCCAAGAGAGACTTAAA+AGG | 0.365422 | 5_2:-11638109 | Msa0756990:CDS |
| TTGCATGTCGATCCTGCTTC+TGG | 0.366742 | 5_2:-11639077 | Msa0756990:CDS |
| GTGCTCTCCTAGATTTCATT+CGG | 0.367039 | 5_2:-11641722 | Msa0756990:CDS |
| CAAAATCAATCTCAATTGTC+AGG | 0.371934 | 5_2:-11643399 | Msa0756990:five_prime_UTR |
| TGATGTAGCACACGAGTTCC+AGG | 0.390478 | 5_2:+11639896 | None:intergenic |
| GGTGTTTCTTTCTTCTCCCC+TGG | 0.396918 | 5_2:+11638128 | None:intergenic |
| ATTGCTCCCAAGTGGTTAGA+AGG | 0.397816 | 5_2:-11637331 | Msa0756990:CDS |
| AGAACTTGAGTGATATCTTC+TGG | 0.399716 | 5_2:+11637599 | None:intergenic |
| AAGCTTATTCTCGTTCTAGA+AGG | 0.405006 | 5_2:-11639705 | Msa0756990:intron |
| TAGGAGTCTTTGGTTTGCTT+CGG | 0.406206 | 5_2:+11639503 | None:intergenic |
| GCGAGAAGGGGACCGAGAAC+GGG | 0.412316 | 5_2:+11637572 | None:intergenic |
| TCTTTCTTCTCCCCTGGTTG+AGG | 0.418033 | 5_2:+11638134 | None:intergenic |
| CTGTATTGCAGGTCATCATC+TGG | 0.420609 | 5_2:-11639116 | Msa0756990:intron |
| GGGAAATTCATTCATTCATC+GGG | 0.421739 | 5_2:-11643378 | Msa0756990:five_prime_UTR |
| GTATGGTTGGCTTGTTTACA+TGG | 0.422177 | 5_2:-11640160 | Msa0756990:CDS |
| TCCTCAGGATACCCTGGAAT+GGG | 0.422424 | 5_2:-11641881 | Msa0756990:intron |
| TAACAATCCTTGTTGATCTT+CGG | 0.423578 | 5_2:+11643081 | None:intergenic |
| TGGGTGATGGTATACCTTAC+GGG | 0.429124 | 5_2:+11639017 | None:intergenic |
| ACAAGCCAAGAAAAGAGAAC+AGG | 0.429228 | 5_2:-11637950 | Msa0756990:CDS |
| TGCAAATGGAGCAGCAGCCT+TGG | 0.433833 | 5_2:+11641334 | None:intergenic |
| AACCTGTGAGTAAGATCCTT+TGG | 0.435314 | 5_2:+11640338 | None:intergenic |
| CAAAAGAATATGGGGTCAAA+AGG | 0.442771 | 5_2:-11640182 | Msa0756990:CDS |
| CCCAACCTGTCTGATGCAAA+TGG | 0.449975 | 5_2:+11641320 | None:intergenic |
| TGTGATTTGCGAGAATTTGA+AGG | 0.450230 | 5_2:-11643289 | Msa0756990:five_prime_UTR |
| TACTATCCCGAATGAAATCT+AGG | 0.453036 | 5_2:+11641715 | None:intergenic |
| CGAGAAGCTACACGGATACC+TGG | 0.457347 | 5_2:-11639914 | Msa0756990:CDS |
| CTCCTTATTCTCGTTCTCCC+AGG | 0.459604 | 5_2:-11637524 | Msa0756990:intron |
| GGCAAGAAGGTCGGAGAAGA+AGG | 0.460367 | 5_2:-11643248 | Msa0756990:CDS |
| AGATAATTGCAAAAGAATAT+GGG | 0.462979 | 5_2:-11640191 | Msa0756990:CDS |
| TGCTCTCCTAGATTTCATTC+GGG | 0.465274 | 5_2:-11641721 | Msa0756990:CDS |
| ATAGGCGTCGCAGCCGCAGC+AGG | 0.465591 | 5_2:-11637879 | Msa0756990:CDS |
| AAGGATCTTACTCACAGGTT+GGG | 0.468137 | 5_2:-11640335 | Msa0756990:CDS |
| CTGCTCCATTTGCATCAGAC+AGG | 0.468882 | 5_2:-11641325 | Msa0756990:intron |
| AGGGAAATTCATTCATTCAT+CGG | 0.473574 | 5_2:-11643379 | Msa0756990:five_prime_UTR |
| TATATACATGCAGGGAATCA+AGG | 0.473761 | 5_2:-11639744 | Msa0756990:intron |
| TAAGATCCTTTGGTTGCAGC+AGG | 0.477039 | 5_2:+11640348 | None:intergenic |
| CTGGAGAAGCAGATGGAACT+AGG | 0.485701 | 5_2:-11639450 | Msa0756990:CDS |
| CATTCATTCATCGGGTTGGT+GGG | 0.486026 | 5_2:-11643370 | Msa0756990:five_prime_UTR |
| CGGGGAGTAGGACCGTGATC+TGG | 0.488896 | 5_2:+11639573 | None:intergenic |
| TGGAACTCGTGTGCTACATC+AGG | 0.490057 | 5_2:-11639894 | Msa0756990:CDS |
| TGCGAGAAGGGGACCGAGAA+CGG | 0.491153 | 5_2:+11637571 | None:intergenic |
| GCGGAGAACGAGTGCGAGAA+GGG | 0.491633 | 5_2:+11637559 | None:intergenic |
| TATACCTTTGCAGATTTGAT+GGG | 0.497057 | 5_2:-11641746 | Msa0756990:intron |
| AACTGAGTCGTAAGGAAAGA+AGG | 0.499230 | 5_2:-11639967 | Msa0756990:CDS |
| TCTGGTGTATCCGTTGATAA+AGG | 0.500146 | 5_2:-11639059 | Msa0756990:CDS |
| GTAGAAGTCCAAGTAGAAGC+AGG | 0.500172 | 5_2:-11637626 | Msa0756990:CDS |
| CTAGTCGATTGAGTAGGTAT+AGG | 0.500217 | 5_2:-11637897 | Msa0756990:CDS |
| TCATTCATTCATCGGGTTGG+TGG | 0.503410 | 5_2:-11643371 | Msa0756990:five_prime_UTR |
| TGATTAACTGCAGAAGGTAC+AGG | 0.506954 | 5_2:-11637653 | Msa0756990:intron |
| CGAGAATAAGCTTCGTAAGT+AGG | 0.508612 | 5_2:+11639715 | None:intergenic |
| GAATATGGGGTCAAAAGGTA+TGG | 0.513227 | 5_2:-11640177 | Msa0756990:CDS |
| AAAGAGAACAGGAGCGACAG+AGG | 0.514412 | 5_2:-11637939 | Msa0756990:CDS |
| TCTCTCTCTTTCAACTTGAG+AGG | 0.516754 | 5_2:+11639940 | None:intergenic |
| CAATCCTTGTTGATCTTCGG+TGG | 0.520275 | 5_2:+11643084 | None:intergenic |
| GACTTTAGCACCTTTATCAA+CGG | 0.520392 | 5_2:+11639049 | None:intergenic |
| AGATTGCACACAAGCCTCGC+TGG | 0.522876 | 5_2:+11637362 | None:intergenic |
| TCAGGCTAAGAAACCGTTCA+AGG | 0.524214 | 5_2:-11637414 | Msa0756990:CDS |
| CCTATGCAAGGCGTTATTCA+CGG | 0.524561 | 5_2:-11639549 | Msa0756990:CDS |
| AATTCATTCATTCATCGGGT+TGG | 0.526146 | 5_2:-11643374 | Msa0756990:five_prime_UTR |
| TTCCTCAGGATACCCTGGAA+TGG | 0.529350 | 5_2:-11641882 | Msa0756990:intron |
| AGCGATGATAGCAATGATGA+AGG | 0.531426 | 5_2:-11640219 | Msa0756990:CDS |
| GTGTGATAAAATACCTTGGT+GGG | 0.539061 | 5_2:+11637842 | None:intergenic |
| AAAGGATCTTACTCACAGGT+TGG | 0.542897 | 5_2:-11640336 | Msa0756990:CDS |
| ATGGGGTCAAAAGGTATGGT+TGG | 0.544068 | 5_2:-11640173 | Msa0756990:CDS |
| CTCGAGTTGATACATTAAAC+CGG | 0.548200 | 5_2:-11639393 | Msa0756990:intron |
| ATATCTTGTTTCCCATTCCA+GGG | 0.548452 | 5_2:+11641870 | None:intergenic |
| TGCGGAGAACGAGTGCGAGA+AGG | 0.549507 | 5_2:+11637558 | None:intergenic |
| TAATGTATCAACTCGAGATG+TGG | 0.554923 | 5_2:+11639399 | None:intergenic |
| AATAACGCCTTGCATAGGAC+GGG | 0.555643 | 5_2:+11639554 | None:intergenic |
| GTAGAGGAAACTGAGTCGTA+AGG | 0.556893 | 5_2:-11639975 | Msa0756990:intron |
| AATGTATCAACTCGAGATGT+GGG | 0.557381 | 5_2:+11639400 | None:intergenic |
| ATTTGCGAGAATTTGAAGGA+AGG | 0.561861 | 5_2:-11643285 | Msa0756990:five_prime_UTR |
| GTGCAATCAATTCAAGTCGT+TGG | 0.564747 | 5_2:-11643148 | Msa0756990:CDS |
| TGAAACATTGTATGCATGAA+AGG | 0.566134 | 5_2:-11637385 | Msa0756990:CDS |
| GGGCTCTTAAAACCTCAACC+AGG | 0.567364 | 5_2:-11638146 | Msa0756990:CDS |
| CCTACTCCCCGTCCTATGCA+AGG | 0.568143 | 5_2:-11639561 | Msa0756990:CDS |
| GCGATGATAGCAATGATGAA+GGG | 0.569721 | 5_2:-11640218 | Msa0756990:CDS |
| CGAAGATGACGAGGATGATG+AGG | 0.571273 | 5_2:-11640250 | Msa0756990:CDS |
| ACGACTTGAATTGATTGCAC+AGG | 0.573876 | 5_2:+11643151 | None:intergenic |
| ATCGGGATTTAATAAAGCAT+CGG | 0.577658 | 5_2:-11641623 | Msa0756990:CDS |
| AAAATCAATCTCAATTGTCA+GGG | 0.581700 | 5_2:-11643398 | Msa0756990:five_prime_UTR |
| AGAATACATAACTGAATTTG+GGG | 0.582675 | 5_2:-11639476 | Msa0756990:CDS |
| TGCTACATCAGGACCCCTAC+CGG | 0.582784 | 5_2:-11639883 | Msa0756990:intron |
| AGATGTGGCATGAGGCAAGA+AGG | 0.585460 | 5_2:-11643261 | Msa0756990:CDS |
| CATGGATAAGAAAGCCAAAG+AGG | 0.585701 | 5_2:-11640142 | Msa0756990:CDS |
| CTGAAACTAGTCGATTGAGT+AGG | 0.588625 | 5_2:-11637903 | Msa0756990:CDS |
| TCAACGGATACACCAGAAGC+AGG | 0.590050 | 5_2:+11639065 | None:intergenic |
| TAGAAGTCCAAGTAGAAGCA+GGG | 0.590908 | 5_2:-11637625 | Msa0756990:CDS |
| AGGCAAAAGGAGATAATCAA+AGG | 0.590916 | 5_2:-11640111 | Msa0756990:CDS |
| AAATCTAGAGATGGAGGCCA+AGG | 0.591377 | 5_2:-11641351 | Msa0756990:CDS |
| ATACGACGGAAATGGTAAAG+AGG | 0.596376 | 5_2:-11640307 | Msa0756990:CDS |
| AAGTCTTGAAGCCACCCGTA+AGG | 0.597087 | 5_2:-11639031 | Msa0756990:intron |
| GAAGAAGGTCCATGACATGA+TGG | 0.597424 | 5_2:-11643233 | Msa0756990:CDS |
| TGTTTCATCAGTGCCTTGAA+CGG | 0.597979 | 5_2:+11637401 | None:intergenic |
| CGGAGAACGAGTGCGAGAAG+GGG | 0.598706 | 5_2:+11637560 | None:intergenic |
| TGATAGCAATGATGAAGGGA+TGG | 0.599977 | 5_2:-11640214 | Msa0756990:CDS |
| CCGTGAATAACGCCTTGCAT+AGG | 0.601191 | 5_2:+11639549 | None:intergenic |
| GATAATTGCAAAAGAATATG+GGG | 0.605763 | 5_2:-11640190 | Msa0756990:CDS |
| GCAACATGTAAATCTAGAGA+TGG | 0.608218 | 5_2:-11641360 | Msa0756990:CDS |
| TTAAAGGCAAGTGGTTCTGG+AGG | 0.608799 | 5_2:-11638167 | Msa0756990:CDS |
| AGAAGTCCAAGTAGAAGCAG+GGG | 0.610389 | 5_2:-11637624 | Msa0756990:CDS |
| TCACAGCCTGCTGCAACCAA+AGG | 0.610560 | 5_2:-11640354 | Msa0756990:CDS |
| GATTTCAGATGACGATGATG+AGG | 0.611188 | 5_2:-11640277 | Msa0756990:CDS |
| GCAGATGGAACTAGGCGTGA+AGG | 0.612922 | 5_2:-11639442 | Msa0756990:CDS |
| GAATAACGCCTTGCATAGGA+CGG | 0.613651 | 5_2:+11639553 | None:intergenic |
| GAGCAGCGTCCATCATGTCA+TGG | 0.613715 | 5_2:+11643224 | None:intergenic |
| AACCAAAGGATCTTACTCAC+AGG | 0.615408 | 5_2:-11640340 | Msa0756990:CDS |
| CCTTGCATAGGACGGGGAGT+AGG | 0.615985 | 5_2:+11639561 | None:intergenic |
| ACTCGAGATGTGGGAGATCG+CGG | 0.618313 | 5_2:+11639409 | None:intergenic |
| TAAGGAGAGCGTGAACGATG+CGG | 0.619732 | 5_2:+11637540 | None:intergenic |
| GCAGGTCAAGGTCCAGATCA+CGG | 0.623636 | 5_2:-11639585 | Msa0756990:intron |
| GGTGTGATAAAATACCTTGG+TGG | 0.625016 | 5_2:+11637841 | None:intergenic |
| TTAATAAAGCATCGGCGTAG+AGG | 0.625301 | 5_2:-11641615 | Msa0756990:CDS |
| ACATGTAAATCTAGAGATGG+AGG | 0.626918 | 5_2:-11641357 | Msa0756990:CDS |
| GGCTCTTAAAACCTCAACCA+GGG | 0.627093 | 5_2:-11638145 | Msa0756990:CDS |
| ATGTTGCAAAGCGTCCTCGT+CGG | 0.628314 | 5_2:+11641376 | None:intergenic |
| GTGGCATGAGGCAAGAAGGT+CGG | 0.629760 | 5_2:-11643257 | Msa0756990:CDS |
| AACGACTGTAACTCCTGCTG+CGG | 0.631562 | 5_2:+11637866 | None:intergenic |
| TTTGCTAGTGCTGAGCCTGA+AGG | 0.633784 | 5_2:+11638191 | None:intergenic |
| GAGTCGTAAGGAAAGAAGGA+AGG | 0.634052 | 5_2:-11639963 | Msa0756990:CDS |
| CTAGCAAAGTTAAAGGCAAG+TGG | 0.638031 | 5_2:-11638176 | Msa0756990:CDS |
| GTTTACATATTGCTCCCAAG+TGG | 0.639802 | 5_2:-11637339 | Msa0756990:CDS |
| AATTTGAAGGAAGGAAGATG+TGG | 0.640876 | 5_2:-11643276 | Msa0756990:exon |
| TGTCCAGGAAAAGTCTGAAG+AGG | 0.644395 | 5_2:-11641682 | Msa0756990:CDS |
| TGTGATAAAATACCTTGGTG+GGG | 0.644679 | 5_2:+11637843 | None:intergenic |
| AGAGAGAGCGAGAAGCTACA+CGG | 0.650224 | 5_2:-11639922 | Msa0756990:CDS |
| CGAGATGTGGGAGATCGCGG+TGG | 0.662862 | 5_2:+11639412 | None:intergenic |
| TAAAGGCAAGTGGTTCTGGA+GGG | 0.663853 | 5_2:-11638166 | Msa0756990:CDS |
| ATAACGCCTTGCATAGGACG+GGG | 0.672285 | 5_2:+11639555 | None:intergenic |
| GTTACAGTCGTTCCCCACCA+AGG | 0.676212 | 5_2:-11637855 | Msa0756990:intron |
| AGGAAGGAAGATGTGGCATG+AGG | 0.678562 | 5_2:-11643269 | Msa0756990:exon |
| CAAGCCACCGAAGATCAACA+AGG | 0.682803 | 5_2:-11643088 | Msa0756990:CDS |
| GTGATGGTATACCTTACGGG+TGG | 0.693583 | 5_2:+11639020 | None:intergenic |
| GTTTACCTTGCAAAACGTCG+CGG | 0.695099 | 5_2:-11643178 | Msa0756990:CDS |
| TGAGGAAGACGAAGATGACG+AGG | 0.698746 | 5_2:-11640259 | Msa0756990:CDS |
| GAATACATAACTGAATTTGG+GGG | 0.701409 | 5_2:-11639475 | Msa0756990:CDS |
| GCTCTTAAAACCTCAACCAG+GGG | 0.701777 | 5_2:-11638144 | Msa0756990:CDS |
| AATGGTAACAGTTACCGACG+AGG | 0.731571 | 5_2:-11641390 | Msa0756990:intron |
| GTATGCATGAAAGGCCAGCG+AGG | 0.750427 | 5_2:-11637376 | Msa0756990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAAAATATAGAAAAAA+TGG | + | chr5_2:11637681-11637700 | None:intergenic | 10.0% |
| !!! | TTAAAATTGATTCTATAATT+TGG | - | chr5_2:11637721-11637740 | Msa0756990:intron | 10.0% |
| !!! | TAAAATTGATTCTATAATTT+GGG | - | chr5_2:11637722-11637741 | Msa0756990:intron | 10.0% |
| !!! | AAATAGCATAATTTTATTAA+CGG | + | chr5_2:11643003-11643022 | None:intergenic | 10.0% |
| !!! | TAAATTATCTTATTTGAAGT+AGG | + | chr5_2:11637782-11637801 | None:intergenic | 15.0% |
| !! | TGAAACAAATGTAATAATTT+AGG | - | chr5_2:11638251-11638270 | Msa0756990:intron | 15.0% |
| !! | GAAACAAATGTAATAATTTA+GGG | - | chr5_2:11638252-11638271 | Msa0756990:intron | 15.0% |
| !!! | TTTTTTTTTCTTCCATTAAA+TGG | - | chr5_2:11638314-11638333 | Msa0756990:intron | 15.0% |
| !! | TAAAACATATAATTCGTTTA+TGG | - | chr5_2:11638787-11638806 | Msa0756990:intron | 15.0% |
| !!! | TTTTTATCAGAAACTTATTT+AGG | - | chr5_2:11639762-11639781 | Msa0756990:intron | 15.0% |
| !!! | ATTTCTTTATGTAGTAATTT+TGG | - | chr5_2:11640141-11640160 | Msa0756990:CDS | 15.0% |
| !!! | ATATCTTATAAATTTTGTAG+AGG | - | chr5_2:11640728-11640747 | Msa0756990:intron | 15.0% |
| !!! | AAAATATCAATATTTTCTAC+CGG | + | chr5_2:11640858-11640877 | None:intergenic | 15.0% |
| !!! | ATTCTAAAACCATAAATAAT+TGG | + | chr5_2:11641437-11641456 | None:intergenic | 15.0% |
| !!! | TATATCCTTTTTTTTTCTTT+CGG | - | chr5_2:11642408-11642427 | Msa0756990:intron | 15.0% |
| !!! | AATAGCATAATTTTATTAAC+GGG | + | chr5_2:11643002-11643021 | None:intergenic | 15.0% |
| !! | AAACTATCGAAATCAAAATT+AGG | - | chr5_2:11637387-11637406 | Msa0756990:CDS | 20.0% |
| !! | AACTATCGAAATCAAAATTA+GGG | - | chr5_2:11637388-11637407 | Msa0756990:CDS | 20.0% |
| !! | AAATATAGAAAAAATGGAGA+AGG | + | chr5_2:11637675-11637694 | None:intergenic | 20.0% |
| !!! | ATTCTATAATTTGGGATTAA+TGG | - | chr5_2:11637730-11637749 | Msa0756990:intron | 20.0% |
| !! | TTTCTATTCATGATCAAAAT+TGG | - | chr5_2:11638162-11638181 | Msa0756990:CDS | 20.0% |
| !! | TTCTATTCATGATCAAAATT+GGG | - | chr5_2:11638163-11638182 | Msa0756990:CDS | 20.0% |
| !!! | AACTAACTTAATTACACTTT+TGG | + | chr5_2:11638296-11638315 | None:intergenic | 20.0% |
| !!! | TTTTACTAACAAAAATTCAG+AGG | + | chr5_2:11638772-11638791 | None:intergenic | 20.0% |
| !!! | TTATAATTCATTTTTTCCTC+AGG | - | chr5_2:11638823-11638842 | Msa0756990:intron | 20.0% |
| !! | TATAAACAGTTTGATTATTG+TGG | - | chr5_2:11639173-11639192 | Msa0756990:intron | 20.0% |
| !! | TTATCAGGAAAAAAGAATAT+TGG | + | chr5_2:11639219-11639238 | None:intergenic | 20.0% |
| !! | ATAAAATTGTAAATAGCTGT+TGG | - | chr5_2:11639517-11639536 | Msa0756990:CDS | 20.0% |
| !!! | TTTACATGAAAACAATTTTC+TGG | + | chr5_2:11639729-11639748 | None:intergenic | 20.0% |
| !! | CATAAAGAAATAGACAATTA+TGG | + | chr5_2:11640132-11640151 | None:intergenic | 20.0% |
| !! | AGATAATTGCAAAAGAATAT+GGG | - | chr5_2:11640528-11640547 | Msa0756990:intron | 20.0% |
| !!! | TCAGTTATGTATTCTATTTT+AGG | + | chr5_2:11641238-11641257 | None:intergenic | 20.0% |
| !! | ATAGAATACATAACTGAATT+TGG | - | chr5_2:11641241-11641260 | Msa0756990:intron | 20.0% |
| !! | TAGAATACATAACTGAATTT+GGG | - | chr5_2:11641242-11641261 | Msa0756990:intron | 20.0% |
| !! | ATTATGCAAAATTCATTTCA+GGG | + | chr5_2:11641534-11641553 | None:intergenic | 20.0% |
| !! | AATTATGCAAAATTCATTTC+AGG | + | chr5_2:11641535-11641554 | None:intergenic | 20.0% |
| !!! | ATGTGAATAGAGTATTAAAA+TGG | - | chr5_2:11641740-11641759 | Msa0756990:intron | 20.0% |
| !! | AAATTCCGAAAGAAAAAAAA+AGG | + | chr5_2:11642416-11642435 | None:intergenic | 20.0% |
| !! | TTCGGAATTTATTATTACAA+TGG | - | chr5_2:11642426-11642445 | Msa0756990:intron | 20.0% |
| !! | TCGGAATTTATTATTACAAT+GGG | - | chr5_2:11642427-11642446 | Msa0756990:intron | 20.0% |
| !!! | TGTAATTTGTGTAACTTTAT+TGG | - | chr5_2:11642918-11642937 | Msa0756990:intron | 20.0% |
| !! | CATAATATTAATTAAACCAG+AGG | + | chr5_2:11643048-11643067 | None:intergenic | 20.0% |
| ! | AAAATCAATCTCAATTGTCA+GGG | - | chr5_2:11637321-11637340 | Msa0756990:CDS | 25.0% |
| !!! | TTTTGATTTCGATAGTTTCA+GGG | + | chr5_2:11637385-11637404 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTCGATAGTTTC+AGG | + | chr5_2:11637386-11637405 | None:intergenic | 25.0% |
| !!! | GTAATTTAGGATCTTTTAGA+TGG | - | chr5_2:11637754-11637773 | Msa0756990:intron | 25.0% |
| ! | TTTGTTTATTTCACTGTTTC+TGG | - | chr5_2:11637802-11637821 | Msa0756990:intron | 25.0% |
| ! | AATTGATGTATTCAACGTAA+GGG | - | chr5_2:11637828-11637847 | Msa0756990:intron | 25.0% |
| ! | GAGAAAAAAAATAAGCTCAT+TGG | - | chr5_2:11637851-11637870 | Msa0756990:intron | 25.0% |
| !!! | TAATTTTAGTACAATGAGTG+AGG | - | chr5_2:11637931-11637950 | Msa0756990:CDS | 25.0% |
| ! | ATTTAATCAGTATGCATTTC+TGG | - | chr5_2:11637956-11637975 | Msa0756990:CDS | 25.0% |
| ! | TGAGCAAAAACAAAATGATA+GGG | + | chr5_2:11637997-11638016 | None:intergenic | 25.0% |
| !!! | CTTTTTTAAATCGAGCTTTT+AGG | - | chr5_2:11638032-11638051 | Msa0756990:intron | 25.0% |
| !! | GACCAAAAATCATCATTTTA+GGG | + | chr5_2:11638108-11638127 | None:intergenic | 25.0% |
| !! | CTGCTAAAAATCAAACTTTT+GGG | + | chr5_2:11638130-11638149 | None:intergenic | 25.0% |
| !! | TTTTGGTCATCAAATTGTTT+TGG | + | chr5_2:11638279-11638298 | None:intergenic | 25.0% |
| !! | TTTACGCTTTTACCATTTAA+TGG | + | chr5_2:11638329-11638348 | None:intergenic | 25.0% |
| ! | AATTGTTTGATCAAGCTAAA+AGG | - | chr5_2:11638473-11638492 | Msa0756990:intron | 25.0% |
| ! | AATTAAGAAAAGCGGAAAAT+AGG | + | chr5_2:11638648-11638667 | None:intergenic | 25.0% |
| !!! | AACAAGATATTTTGATTGAC+AGG | - | chr5_2:11638862-11638881 | Msa0756990:intron | 25.0% |
| !! | TTGTTAATTTTGAGCGTTAT+CGG | - | chr5_2:11639078-11639097 | Msa0756990:CDS | 25.0% |
| !!! | TTCACAAACTTGGTTTTTAA+TGG | - | chr5_2:11639311-11639330 | Msa0756990:intron | 25.0% |
| ! | TCCATATATCTTTATATGCA+TGG | - | chr5_2:11639485-11639504 | Msa0756990:CDS | 25.0% |
| ! | ACCATGCATATAAAGATATA+TGG | + | chr5_2:11639489-11639508 | None:intergenic | 25.0% |
| ! | TCTTAATGCAAATAATCAGA+TGG | - | chr5_2:11639559-11639578 | Msa0756990:CDS | 25.0% |
| ! | GAGATAATTGCAAAAGAATA+TGG | - | chr5_2:11640527-11640546 | Msa0756990:intron | 25.0% |
| ! | GATAATTGCAAAAGAATATG+GGG | - | chr5_2:11640529-11640548 | Msa0756990:intron | 25.0% |
| !!! | TATTCTATTTTAGGAGTCTT+TGG | + | chr5_2:11641229-11641248 | None:intergenic | 25.0% |
| ! | AGAATACATAACTGAATTTG+GGG | - | chr5_2:11641243-11641262 | Msa0756990:intron | 25.0% |
| ! | TCAATCTTGGCAATAATTAA+AGG | + | chr5_2:11641365-11641384 | None:intergenic | 25.0% |
| ! | TAATTATTGCCAAGATTGAT+TGG | - | chr5_2:11641366-11641385 | Msa0756990:CDS | 25.0% |
| ! | TTTCCTGAACCAATTATTTA+TGG | - | chr5_2:11641425-11641444 | Msa0756990:intron | 25.0% |
| !! | AAACCATAAATAATTGGTTC+AGG | + | chr5_2:11641431-11641450 | None:intergenic | 25.0% |
| !!! | TTTTAGAATAGATCATGACT+AGG | - | chr5_2:11641448-11641467 | Msa0756990:intron | 25.0% |
| !! | GAGTATTAAAATGGTTTTTG+TGG | - | chr5_2:11641749-11641768 | Msa0756990:intron | 25.0% |
| !! | AGAACTTAAAATGGTTTTTG+TGG | - | chr5_2:11641792-11641811 | Msa0756990:intron | 25.0% |
| ! | ATGGTAGAACTATATTGTTT+AGG | - | chr5_2:11641830-11641849 | Msa0756990:intron | 25.0% |
| ! | AACATTGAATTATCTCTTGA+GGG | + | chr5_2:11642021-11642040 | None:intergenic | 25.0% |
| ! | ATATTATGATTAACTGCAGA+AGG | - | chr5_2:11643060-11643079 | Msa0756990:intron | 25.0% |
| CAAAATCAATCTCAATTGTC+AGG | - | chr5_2:11637320-11637339 | Msa0756990:CDS | 30.0% | |
| AGGGAAATTCATTCATTCAT+CGG | - | chr5_2:11637340-11637359 | Msa0756990:CDS | 30.0% | |
| ! | TTTGATTTCGATAGTTTCAG+GGG | + | chr5_2:11637384-11637403 | None:intergenic | 30.0% |
| TAACAATCCTTGTTGATCTT+CGG | + | chr5_2:11637641-11637660 | None:intergenic | 30.0% | |
| TGGGATTAATGGTGTAATTT+AGG | - | chr5_2:11637741-11637760 | Msa0756990:intron | 30.0% | |
| GAATTGATGTATTCAACGTA+AGG | - | chr5_2:11637827-11637846 | Msa0756990:intron | 30.0% | |
| ATTGATGTATTCAACGTAAG+GGG | - | chr5_2:11637829-11637848 | Msa0756990:intron | 30.0% | |
| GTTGATACTCTTTGTATGTT+TGG | - | chr5_2:11637904-11637923 | Msa0756990:CDS | 30.0% | |
| !! | ATGCATTTCTGGTAATGATA+AGG | - | chr5_2:11637967-11637986 | Msa0756990:CDS | 30.0% |
| GTGAGCAAAAACAAAATGAT+AGG | + | chr5_2:11637998-11638017 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGCTCACGAAAA+TGG | - | chr5_2:11638003-11638022 | Msa0756990:intron | 30.0% |
| AAGCTCGATTTAAAAAAGAG+AGG | + | chr5_2:11638030-11638049 | None:intergenic | 30.0% | |
| GCAACAAATGTGATAATTGA+TGG | + | chr5_2:11638059-11638078 | None:intergenic | 30.0% | |
| ! | GGACCAAAAATCATCATTTT+AGG | + | chr5_2:11638109-11638128 | None:intergenic | 30.0% |
| ! | GCTGCTAAAAATCAAACTTT+TGG | + | chr5_2:11638131-11638150 | None:intergenic | 30.0% |
| !!! | TTGATTTTTAGCAGCAATAG+TGG | - | chr5_2:11638136-11638155 | Msa0756990:CDS | 30.0% |
| !!! | GACATTAATTTGCCACTTTT+GGG | - | chr5_2:11638185-11638204 | Msa0756990:CDS | 30.0% |
| ! | TCCTATATGCATTGATGAAA+GGG | - | chr5_2:11638354-11638373 | Msa0756990:intron | 30.0% |
| TTGGATTGAGAGTAATTCAA+TGG | - | chr5_2:11638388-11638407 | Msa0756990:intron | 30.0% | |
| ATTCTCATATTCGAAGAGAA+TGG | - | chr5_2:11638510-11638529 | Msa0756990:intron | 30.0% | |
| CCAAGCAAAATTAAGAAAAG+CGG | + | chr5_2:11638656-11638675 | None:intergenic | 30.0% | |
| ! | CGCTTTTCTTAATTTTGCTT+GGG | - | chr5_2:11638654-11638673 | Msa0756990:intron | 30.0% |
| ! | AAATCTGCAAAGGTATAGAT+AGG | + | chr5_2:11638970-11638989 | None:intergenic | 30.0% |
| TATACCTTTGCAGATTTGAT+GGG | - | chr5_2:11638973-11638992 | Msa0756990:intron | 30.0% | |
| ! | TGTTAATTTTGAGCGTTATC+GGG | - | chr5_2:11639079-11639098 | Msa0756990:CDS | 30.0% |
| ATCGGGATTTAATAAAGCAT+CGG | - | chr5_2:11639096-11639115 | Msa0756990:CDS | 30.0% | |
| CTGATAATAATGCCATAGAA+CGG | - | chr5_2:11639232-11639251 | Msa0756990:intron | 30.0% | |
| CATAGCTAAATTCACAAACT+TGG | - | chr5_2:11639301-11639320 | Msa0756990:intron | 30.0% | |
| ! | ATGTTTGTTGAGTGCATATT+TGG | + | chr5_2:11639928-11639947 | None:intergenic | 30.0% |
| TGTCTATAATGAGAACAATG+GGG | + | chr5_2:11639962-11639981 | None:intergenic | 30.0% | |
| CTGTCTATAATGAGAACAAT+GGG | + | chr5_2:11639963-11639982 | None:intergenic | 30.0% | |
| ACTGTCTATAATGAGAACAA+TGG | + | chr5_2:11639964-11639983 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTCATCTAAGCTG+TGG | + | chr5_2:11640060-11640079 | None:intergenic | 30.0% |
| TTTAGTCCAACTCTAACAAT+GGG | - | chr5_2:11640094-11640113 | Msa0756990:intron | 30.0% | |
| AAGAAATAGACAATTATGGC+TGG | + | chr5_2:11640128-11640147 | None:intergenic | 30.0% | |
| !! | TTTGTCTATTGATTCTTGCA+TGG | - | chr5_2:11640227-11640246 | Msa0756990:CDS | 30.0% |
| AGCTGCAAATTATAGATCTA+CGG | + | chr5_2:11640264-11640283 | None:intergenic | 30.0% | |
| !!! | ATATTTTGAGATTACCGTGT+AGG | - | chr5_2:11640691-11640710 | Msa0756990:intron | 30.0% |
| ! | ATCAATATTTTCTACCGGTA+GGG | + | chr5_2:11640853-11640872 | None:intergenic | 30.0% |
| ! | TATCAATATTTTCTACCGGT+AGG | + | chr5_2:11640854-11640873 | None:intergenic | 30.0% |
| TCAGATATTCTTCGTTCAAT+CGG | + | chr5_2:11640888-11640907 | None:intergenic | 30.0% | |
| !! | TTCTTGCATACTAGTCTTAA+TGG | - | chr5_2:11640943-11640962 | Msa0756990:intron | 30.0% |
| TTGACTCAATATATACATGC+AGG | - | chr5_2:11640966-11640985 | Msa0756990:intron | 30.0% | |
| TGACTCAATATATACATGCA+GGG | - | chr5_2:11640967-11640986 | Msa0756990:intron | 30.0% | |
| AACGAGAAGAATGAGTAAAA+TGG | + | chr5_2:11641076-11641095 | None:intergenic | 30.0% | |
| TTTACTCATTCTTCTCGTTA+AGG | - | chr5_2:11641077-11641096 | Msa0756990:intron | 30.0% | |
| CTCGTTAAGGAGAATTTATT+TGG | - | chr5_2:11641090-11641109 | Msa0756990:intron | 30.0% | |
| GAATACATAACTGAATTTGG+GGG | - | chr5_2:11641244-11641263 | Msa0756990:intron | 30.0% | |
| ! | ATTGGTTCAGGAAACAATAT+GGG | + | chr5_2:11641419-11641438 | None:intergenic | 30.0% |
| ! | AATTGGTTCAGGAAACAATA+TGG | + | chr5_2:11641420-11641439 | None:intergenic | 30.0% |
| TAATATTTACATGCAGCTAC+AGG | + | chr5_2:11641559-11641578 | None:intergenic | 30.0% | |
| ACATTCACATATACACTGTT+GGG | + | chr5_2:11641724-11641743 | None:intergenic | 30.0% | |
| ! | TTTTTGTGGTTTCATCTGTT+AGG | - | chr5_2:11641763-11641782 | Msa0756990:intron | 30.0% |
| AGGAATGGTAGAACTTAAAA+TGG | - | chr5_2:11641783-11641802 | Msa0756990:intron | 30.0% | |
| ! | TTTTTGTGGTTTCATCTGTT+AGG | - | chr5_2:11641763-11641782 | Msa0756990:intron | 30.0% |
| CATTCTTAAAGATGTACACA+AGG | - | chr5_2:11641900-11641919 | Msa0756990:intron | 30.0% | |
| GAACATTGAATTATCTCTTG+AGG | + | chr5_2:11642022-11642041 | None:intergenic | 30.0% | |
| !! | ATTCTGTTCTGTTGTTTCTT+TGG | + | chr5_2:11642113-11642132 | None:intergenic | 30.0% |
| AATGCTGATGCAAAATCTAA+TGG | + | chr5_2:11642324-11642343 | None:intergenic | 30.0% | |
| TACAAATCCTAGAGTATACA+AGG | + | chr5_2:11642902-11642921 | None:intergenic | 30.0% | |
| GAAAGACATTAATTTCACCT+GGG | + | chr5_2:11643215-11643234 | None:intergenic | 30.0% | |
| AGAAAGACATTAATTTCACC+TGG | + | chr5_2:11643216-11643235 | None:intergenic | 30.0% | |
| AAAGAATGATTGAGATGATG+AGG | + | chr5_2:11643263-11643282 | None:intergenic | 30.0% | |
| ATTCAGAAAGTTGACATTTC+AGG | - | chr5_2:11643287-11643306 | Msa0756990:five_prime_UTR | 30.0% | |
| TGAAACATTGTATGCATGAA+AGG | - | chr5_2:11643334-11643353 | Msa0756990:intron | 30.0% | |
| GGGAAATTCATTCATTCATC+GGG | - | chr5_2:11637341-11637360 | Msa0756990:CDS | 35.0% | |
| AATTCATTCATTCATCGGGT+TGG | - | chr5_2:11637345-11637364 | Msa0756990:CDS | 35.0% | |
| ! | TGTGATTTGCGAGAATTTGA+AGG | - | chr5_2:11637430-11637449 | Msa0756990:intron | 35.0% |
| ATTTGCGAGAATTTGAAGGA+AGG | - | chr5_2:11637434-11637453 | Msa0756990:intron | 35.0% | |
| AATTTGAAGGAAGGAAGATG+TGG | - | chr5_2:11637443-11637462 | Msa0756990:intron | 35.0% | |
| !! | GTTTATTTCACTGTTTCTGG+AGG | - | chr5_2:11637805-11637824 | Msa0756990:intron | 35.0% |
| ! | TTTGCACCTGATCAAGTTTT+TGG | - | chr5_2:11638082-11638101 | Msa0756990:CDS | 35.0% |
| ! | GGCCCTAAAATGATGATTTT+TGG | - | chr5_2:11638103-11638122 | Msa0756990:CDS | 35.0% |
| !!! | GGACATTAATTTGCCACTTT+TGG | - | chr5_2:11638184-11638203 | Msa0756990:CDS | 35.0% |
| ! | CTCCTATATGCATTGATGAA+AGG | - | chr5_2:11638353-11638372 | Msa0756990:intron | 35.0% |
| ACCCTTTCATCAATGCATAT+AGG | + | chr5_2:11638358-11638377 | None:intergenic | 35.0% | |
| GATTGAGAGTAATTCAATGG+TGG | - | chr5_2:11638391-11638410 | Msa0756990:intron | 35.0% | |
| ! | CAATTGTTTCTTAACCTCCA+GGG | + | chr5_2:11638449-11638468 | None:intergenic | 35.0% |
| ! | TCAATTGTTTCTTAACCTCC+AGG | + | chr5_2:11638450-11638469 | None:intergenic | 35.0% |
| ! | AATGGAATAATTGTGCCGAT+AGG | - | chr5_2:11638528-11638547 | Msa0756990:intron | 35.0% |
| !! | CCGCTTTTCTTAATTTTGCT+TGG | - | chr5_2:11638653-11638672 | Msa0756990:intron | 35.0% |
| ! | ATATCTTGTTTCCCATTCCA+GGG | + | chr5_2:11638852-11638871 | None:intergenic | 35.0% |
| ! | AATATCTTGTTTCCCATTCC+AGG | + | chr5_2:11638853-11638872 | None:intergenic | 35.0% |
| CTATACCTTTGCAGATTTGA+TGG | - | chr5_2:11638972-11638991 | Msa0756990:intron | 35.0% | |
| TACTATCCCGAATGAAATCT+AGG | + | chr5_2:11639007-11639026 | None:intergenic | 35.0% | |
| ! | TCATTCGGGATAGTAGTTTT+AGG | - | chr5_2:11639012-11639031 | Msa0756990:intron | 35.0% |
| CGTTCTATGGCATTATTATC+AGG | + | chr5_2:11639234-11639253 | None:intergenic | 35.0% | |
| ! | CTAGAAACTTTTCCGTTCTA+TGG | + | chr5_2:11639247-11639266 | None:intergenic | 35.0% |
| ! | CGGAAAAGTTTCTAGAAATC+AGG | - | chr5_2:11639252-11639271 | Msa0756990:intron | 35.0% |
| TTAGCTATGAAACTAATCCC+TGG | + | chr5_2:11639290-11639309 | None:intergenic | 35.0% | |
| GCAACATGTAAATCTAGAGA+TGG | - | chr5_2:11639359-11639378 | Msa0756990:intron | 35.0% | |
| ACATGTAAATCTAGAGATGG+AGG | - | chr5_2:11639362-11639381 | Msa0756990:intron | 35.0% | |
| AACAGTCAGTTAAAAATGCG+TGG | + | chr5_2:11639434-11639453 | None:intergenic | 35.0% | |
| !! | TTGTAAATAGCTGTTGGTTC+TGG | - | chr5_2:11639523-11639542 | Msa0756990:CDS | 35.0% |
| !! | TGTAAATAGCTGTTGGTTCT+GGG | - | chr5_2:11639524-11639543 | Msa0756990:CDS | 35.0% |
| TCAAAATAATCAGTAGCGCA+TGG | + | chr5_2:11639616-11639635 | None:intergenic | 35.0% | |
| ACTCGAGAGTTTGACAATAA+TGG | + | chr5_2:11639649-11639668 | None:intergenic | 35.0% | |
| ! | ACATTGAACCACTGTCTTTT+AGG | + | chr5_2:11639825-11639844 | None:intergenic | 35.0% |
| ACATGTTAAATGACAAGCGT+TGG | - | chr5_2:11639863-11639882 | Msa0756990:intron | 35.0% | |
| GTACAAACTATTATCCTCAG+CGG | - | chr5_2:11639890-11639909 | Msa0756990:CDS | 35.0% | |
| GTTTAGTCCAACTCTAACAA+TGG | - | chr5_2:11640093-11640112 | Msa0756990:intron | 35.0% | |
| AATAGACAATTATGGCTGGA+CGG | + | chr5_2:11640124-11640143 | None:intergenic | 35.0% | |
| CAAAAGAATATGGGGTCAAA+AGG | - | chr5_2:11640537-11640556 | Msa0756990:intron | 35.0% | |
| AAGCCAAAGAGGAACAAAAA+AGG | - | chr5_2:11640588-11640607 | Msa0756990:intron | 35.0% | |
| !!! | TTGCCTTTTTTGTTCCTCTT+TGG | + | chr5_2:11640594-11640613 | None:intergenic | 35.0% |
| AGAGGAACAAAAAAGGCAAA+AGG | - | chr5_2:11640595-11640614 | Msa0756990:intron | 35.0% | |
| AGGCAAAAGGAGATAATCAA+AGG | - | chr5_2:11640608-11640627 | Msa0756990:intron | 35.0% | |
| ACATTTCCACTTACAATTGC+AGG | + | chr5_2:11640638-11640657 | None:intergenic | 35.0% | |
| ACCAGTCAAAAAATCCTACA+CGG | + | chr5_2:11640708-11640727 | None:intergenic | 35.0% | |
| ! | TCAATATTTTCTACCGGTAG+GGG | + | chr5_2:11640852-11640871 | None:intergenic | 35.0% |
| TATATACATGCAGGGAATCA+AGG | - | chr5_2:11640975-11640994 | Msa0756990:intron | 35.0% | |
| ! | AAGCTTATTCTCGTTCTAGA+AGG | - | chr5_2:11641014-11641033 | Msa0756990:intron | 35.0% |
| ! | TTCTGACCTTTTCAATATGC+AGG | - | chr5_2:11641116-11641135 | Msa0756990:intron | 35.0% |
| AATGTATCAACTCGAGATGT+GGG | + | chr5_2:11641322-11641341 | None:intergenic | 35.0% | |
| TAATGTATCAACTCGAGATG+TGG | + | chr5_2:11641323-11641342 | None:intergenic | 35.0% | |
| !! | CTCGAGTTGATACATTAAAC+CGG | - | chr5_2:11641326-11641345 | Msa0756990:CDS | 35.0% |
| ! | AGTTGATACATTAAACCGGT+CGG | - | chr5_2:11641330-11641349 | Msa0756990:CDS | 35.0% |
| AAAGACTGTCCAATCAATCT+TGG | + | chr5_2:11641378-11641397 | None:intergenic | 35.0% | |
| GACTTTAGCACCTTTATCAA+CGG | + | chr5_2:11641673-11641692 | None:intergenic | 35.0% | |
| CACATTCACATATACACTGT+TGG | + | chr5_2:11641725-11641744 | None:intergenic | 35.0% | |
| ! | GTTTCTTTGGCATATTTCTG+TGG | + | chr5_2:11642100-11642119 | None:intergenic | 35.0% |
| TAATACTGCCATTCGATCAT+TGG | - | chr5_2:11642369-11642388 | Msa0756990:intron | 35.0% | |
| TTACAGTACCAATGATCGAA+TGG | + | chr5_2:11642380-11642399 | None:intergenic | 35.0% | |
| !! | ATCCTTTTAAGTCTCTCTTG+GGG | + | chr5_2:11642615-11642634 | None:intergenic | 35.0% |
| !! | GATCCTTTTAAGTCTCTCTT+GGG | + | chr5_2:11642616-11642635 | None:intergenic | 35.0% |
| !! | TGATCCTTTTAAGTCTCTCT+TGG | + | chr5_2:11642617-11642636 | None:intergenic | 35.0% |
| TGTGATAAAATACCTTGGTG+GGG | + | chr5_2:11642879-11642898 | None:intergenic | 35.0% | |
| GTGTGATAAAATACCTTGGT+GGG | + | chr5_2:11642880-11642899 | None:intergenic | 35.0% | |
| CAAGGTGTGATAAAATACCT+TGG | + | chr5_2:11642884-11642903 | None:intergenic | 35.0% | |
| TATCACACCTTGTATACTCT+AGG | - | chr5_2:11642892-11642911 | Msa0756990:intron | 35.0% | |
| ! | TCATAACACCTTGATGGTTA+AGG | + | chr5_2:11642948-11642967 | None:intergenic | 35.0% |
| GTTATGACTTCTCAGCAAAA+TGG | - | chr5_2:11642961-11642980 | Msa0756990:intron | 35.0% | |
| CAGCAAAATGGAATAGTGAA+TGG | - | chr5_2:11642973-11642992 | Msa0756990:intron | 35.0% | |
| AGAACTTGAGTGATATCTTC+TGG | + | chr5_2:11643123-11643142 | None:intergenic | 35.0% | |
| ! | TGTTTTCCTTCTAACCACTT+GGG | + | chr5_2:11643397-11643416 | None:intergenic | 35.0% |
| ACGACTTGAATTGATTGCAC+AGG | + | chr5_2:11637571-11637590 | None:intergenic | 40.0% | |
| GTGCAATCAATTCAAGTCGT+TGG | - | chr5_2:11637571-11637590 | Msa0756990:CDS | 40.0% | |
| TTAGGGCCAAAAACTTGATC+AGG | + | chr5_2:11638091-11638110 | None:intergenic | 40.0% | |
| ! | GGCCAAAATCACCATTTTCT+GGG | - | chr5_2:11638206-11638225 | Msa0756990:intron | 40.0% |
| ! | GCCAAAATCACCATTTTCTG+GGG | - | chr5_2:11638207-11638226 | Msa0756990:intron | 40.0% |
| ! | TCCCCAGAAAATGGTGATTT+TGG | + | chr5_2:11638211-11638230 | None:intergenic | 40.0% |
| !! | CACCATTTTCTGGGGAAAAA+AGG | - | chr5_2:11638215-11638234 | Msa0756990:intron | 40.0% |
| !!! | AGCCTTTTTTCCCCAGAAAA+TGG | + | chr5_2:11638220-11638239 | None:intergenic | 40.0% |
| TGAAAGGGTGACATGGAATT+TGG | - | chr5_2:11638369-11638388 | Msa0756990:intron | 40.0% | |
| !! | CCCATGATTTGCTAACCTAT+CGG | + | chr5_2:11638546-11638565 | None:intergenic | 40.0% |
| CCGATAGGTTAGCAAATCAT+GGG | - | chr5_2:11638543-11638562 | Msa0756990:intron | 40.0% | |
| AGTGAATCCCACTAAAAAGC+CGG | + | chr5_2:11638579-11638598 | None:intergenic | 40.0% | |
| TATTCTTGCCTGACATAGTC+GGG | + | chr5_2:11638603-11638622 | None:intergenic | 40.0% | |
| GTATTCTTGCCTGACATAGT+CGG | + | chr5_2:11638604-11638623 | None:intergenic | 40.0% | |
| CAAAATGCCAAATCCCAACT+AGG | + | chr5_2:11638710-11638729 | None:intergenic | 40.0% | |
| !! | TTTGAAGCATTGCAAGCTCT+TGG | - | chr5_2:11638726-11638745 | Msa0756990:intron | 40.0% |
| !!! | ATTTTTTCCTCAGGATACCC+TGG | - | chr5_2:11638832-11638851 | Msa0756990:intron | 40.0% |
| GTGCTCTCCTAGATTTCATT+CGG | - | chr5_2:11638997-11639016 | Msa0756990:intron | 40.0% | |
| TGCTCTCCTAGATTTCATTC+GGG | - | chr5_2:11638998-11639017 | Msa0756990:intron | 40.0% | |
| !! | TTAATAAAGCATCGGCGTAG+AGG | - | chr5_2:11639104-11639123 | Msa0756990:CDS | 40.0% |
| ! | ACTGTCTTTTAGGCATATCG+AGG | + | chr5_2:11639815-11639834 | None:intergenic | 40.0% |
| TCGATATGCCTAAAAGACAG+TGG | - | chr5_2:11639814-11639833 | Msa0756990:intron | 40.0% | |
| ATGAATCCAAGAGACTGATG+AGG | - | chr5_2:11640025-11640044 | Msa0756990:intron | 40.0% | |
| AACCAAAGGATCTTACTCAC+AGG | - | chr5_2:11640379-11640398 | Msa0756990:intron | 40.0% | |
| AACCTGTGAGTAAGATCCTT+TGG | + | chr5_2:11640384-11640403 | None:intergenic | 40.0% | |
| AAAGGATCTTACTCACAGGT+TGG | - | chr5_2:11640383-11640402 | Msa0756990:intron | 40.0% | |
| AAGGATCTTACTCACAGGTT+GGG | - | chr5_2:11640384-11640403 | Msa0756990:intron | 40.0% | |
| ATACGACGGAAATGGTAAAG+AGG | - | chr5_2:11640412-11640431 | Msa0756990:intron | 40.0% | |
| GATTTCAGATGACGATGATG+AGG | - | chr5_2:11640442-11640461 | Msa0756990:intron | 40.0% | |
| AGCGATGATAGCAATGATGA+AGG | - | chr5_2:11640500-11640519 | Msa0756990:intron | 40.0% | |
| GCGATGATAGCAATGATGAA+GGG | - | chr5_2:11640501-11640520 | Msa0756990:intron | 40.0% | |
| TGATAGCAATGATGAAGGGA+TGG | - | chr5_2:11640505-11640524 | Msa0756990:intron | 40.0% | |
| GAATATGGGGTCAAAAGGTA+TGG | - | chr5_2:11640542-11640561 | Msa0756990:intron | 40.0% | |
| !! | GTATGGTTGGCTTGTTTACA+TGG | - | chr5_2:11640559-11640578 | Msa0756990:intron | 40.0% |
| CATGGATAAGAAAGCCAAAG+AGG | - | chr5_2:11640577-11640596 | Msa0756990:intron | 40.0% | |
| !!! | ACCGTGTAGGATTTTTTGAC+TGG | - | chr5_2:11640704-11640723 | Msa0756990:intron | 40.0% |
| AACTGAGTCGTAAGGAAAGA+AGG | - | chr5_2:11640752-11640771 | Msa0756990:intron | 40.0% | |
| TCTCTCTCTTTCAACTTGAG+AGG | + | chr5_2:11640782-11640801 | None:intergenic | 40.0% | |
| CGAGAATAAGCTTCGTAAGT+AGG | + | chr5_2:11641007-11641026 | None:intergenic | 40.0% | |
| CCTTGACCTGCATATTGAAA+AGG | + | chr5_2:11641125-11641144 | None:intergenic | 40.0% | |
| ! | CCTTTTCAATATGCAGGTCA+AGG | - | chr5_2:11641122-11641141 | Msa0756990:intron | 40.0% |
| !! | TAGGAGTCTTTGGTTTGCTT+CGG | + | chr5_2:11641219-11641238 | None:intergenic | 40.0% |
| AGATCATGACTAGGATTGTC+AGG | - | chr5_2:11641457-11641476 | Msa0756990:intron | 40.0% | |
| GATCATGACTAGGATTGTCA+GGG | - | chr5_2:11641458-11641477 | Msa0756990:intron | 40.0% | |
| TGATACCTCTACTGTATTGC+AGG | - | chr5_2:11641592-11641611 | Msa0756990:intron | 40.0% | |
| ! | TCTGGTGTATCCGTTGATAA+AGG | - | chr5_2:11641660-11641679 | Msa0756990:CDS | 40.0% |
| ! | TTGGGTGATGGTATACCTTA+CGG | + | chr5_2:11641706-11641725 | None:intergenic | 40.0% |
| ACATATACACTGTTGGGTGA+TGG | + | chr5_2:11641718-11641737 | None:intergenic | 40.0% | |
| GTGGTTTCATCTGTTAGGAA+TGG | - | chr5_2:11641768-11641787 | Msa0756990:intron | 40.0% | |
| GTGGTTTCATCTGTTAGGAA+TGG | - | chr5_2:11641768-11641787 | Msa0756990:intron | 40.0% | |
| !!! | GAGGGAACTTGTTTGTTTTG+TGG | + | chr5_2:11642003-11642022 | None:intergenic | 40.0% |
| TGGCAGAGGAGACAATTTAT+CGG | + | chr5_2:11642045-11642064 | None:intergenic | 40.0% | |
| GCTATCTGAGTATCTGACAT+TGG | + | chr5_2:11642065-11642084 | None:intergenic | 40.0% | |
| CTCAGCACTAGCAAAGTTAA+AGG | - | chr5_2:11642536-11642555 | Msa0756990:intron | 40.0% | |
| CTAGCAAAGTTAAAGGCAAG+TGG | - | chr5_2:11642543-11642562 | Msa0756990:intron | 40.0% | |
| AAGTTAAAGGCAAGTGGTTC+TGG | - | chr5_2:11642549-11642568 | Msa0756990:intron | 40.0% | |
| ACAAGCCAAGAAAAGAGAAC+AGG | - | chr5_2:11642769-11642788 | Msa0756990:intron | 40.0% | |
| CTGAAACTAGTCGATTGAGT+AGG | - | chr5_2:11642816-11642835 | Msa0756990:intron | 40.0% | |
| CTAGTCGATTGAGTAGGTAT+AGG | - | chr5_2:11642822-11642841 | Msa0756990:intron | 40.0% | |
| GGTGTGATAAAATACCTTGG+TGG | + | chr5_2:11642881-11642900 | None:intergenic | 40.0% | |
| TTGGAACACCTTAACCATCA+AGG | - | chr5_2:11642937-11642956 | Msa0756990:intron | 40.0% | |
| GAGAAGTCATAACACCTTGA+TGG | + | chr5_2:11642954-11642973 | None:intergenic | 40.0% | |
| ACCAGAGGAAAACAAAGCAA+GGG | + | chr5_2:11643033-11643052 | None:intergenic | 40.0% | |
| AACCAGAGGAAAACAAAGCA+AGG | + | chr5_2:11643034-11643053 | None:intergenic | 40.0% | |
| ! | TGATTAACTGCAGAAGGTAC+AGG | - | chr5_2:11643066-11643085 | Msa0756990:intron | 40.0% |
| TAGAAGTCCAAGTAGAAGCA+GGG | - | chr5_2:11643094-11643113 | Msa0756990:CDS | 40.0% | |
| TGTTTCATCAGTGCCTTGAA+CGG | + | chr5_2:11643321-11643340 | None:intergenic | 40.0% | |
| GTTTACATATTGCTCCCAAG+TGG | - | chr5_2:11643380-11643399 | Msa0756990:five_prime_UTR | 40.0% | |
| ! | GTGTTTTCCTTCTAACCACT+TGG | + | chr5_2:11643398-11643417 | None:intergenic | 40.0% |
| !! | TCATTCATTCATCGGGTTGG+TGG | - | chr5_2:11637348-11637367 | Msa0756990:CDS | 45.0% |
| !! | CATTCATTCATCGGGTTGGT+GGG | - | chr5_2:11637349-11637368 | Msa0756990:CDS | 45.0% |
| GAAGAAGGTCCATGACATGA+TGG | - | chr5_2:11637486-11637505 | Msa0756990:intron | 45.0% | |
| ! | GCGACGTTTTGCAAGGTAAA+CGG | + | chr5_2:11637542-11637561 | None:intergenic | 45.0% |
| GTTTACCTTGCAAAACGTCG+CGG | - | chr5_2:11637541-11637560 | Msa0756990:CDS | 45.0% | |
| CAATCCTTGTTGATCTTCGG+TGG | + | chr5_2:11637638-11637657 | None:intergenic | 45.0% | |
| !! | TGGTGATTTTGGCCCAAAAG+TGG | + | chr5_2:11638200-11638219 | None:intergenic | 45.0% |
| ! | GGGCCAAAATCACCATTTTC+TGG | - | chr5_2:11638205-11638224 | Msa0756990:intron | 45.0% |
| ! | GCATTGATGAAAGGGTGACA+TGG | - | chr5_2:11638362-11638381 | Msa0756990:intron | 45.0% |
| GTTTCTTAACCTCCAGGGTA+TGG | + | chr5_2:11638444-11638463 | None:intergenic | 45.0% | |
| GCCGATAGGTTAGCAAATCA+TGG | - | chr5_2:11638542-11638561 | Msa0756990:intron | 45.0% | |
| AATCATGGGCATTCCTTGTC+CGG | - | chr5_2:11638557-11638576 | Msa0756990:intron | 45.0% | |
| ! | TTCCTTGTCCGGCTTTTTAG+TGG | - | chr5_2:11638568-11638587 | Msa0756990:intron | 45.0% |
| !! | TCCTTGTCCGGCTTTTTAGT+GGG | - | chr5_2:11638569-11638588 | Msa0756990:intron | 45.0% |
| ATTCACTTCCCGACTATGTC+AGG | - | chr5_2:11638592-11638611 | Msa0756990:intron | 45.0% | |
| GTTTGCACCCCAAAGAGAAA+GGG | + | chr5_2:11638688-11638707 | None:intergenic | 45.0% | |
| ! | TTTGGGGTGCAAACCTAGTT+GGG | - | chr5_2:11638694-11638713 | Msa0756990:intron | 45.0% |
| GTGCAAACCTAGTTGGGATT+TGG | - | chr5_2:11638700-11638719 | Msa0756990:intron | 45.0% | |
| !!! | TAGTAGTTTTAGGCGTGTCC+AGG | - | chr5_2:11639022-11639041 | Msa0756990:intron | 45.0% |
| TGTCCAGGAAAAGTCTGAAG+AGG | - | chr5_2:11639037-11639056 | Msa0756990:CDS | 45.0% | |
| ! | CTTCCTCTTCAGACTTTTCC+TGG | + | chr5_2:11639043-11639062 | None:intergenic | 45.0% |
| GAAACTAATCCCTGGATGTC+AGG | + | chr5_2:11639282-11639301 | None:intergenic | 45.0% | |
| AATGGTAACAGTTACCGACG+AGG | - | chr5_2:11639329-11639348 | Msa0756990:intron | 45.0% | |
| AAATCTAGAGATGGAGGCCA+AGG | - | chr5_2:11639368-11639387 | Msa0756990:intron | 45.0% | |
| TCCATTTGCATCAGACAGGT+TGG | - | chr5_2:11639398-11639417 | Msa0756990:CDS | 45.0% | |
| CCATTTGCATCAGACAGGTT+GGG | - | chr5_2:11639399-11639418 | Msa0756990:CDS | 45.0% | |
| GTCGCGTTAACTCAATTCTG+AGG | + | chr5_2:11639707-11639726 | None:intergenic | 45.0% | |
| CATTCACCTCATCAGTCTCT+TGG | + | chr5_2:11640034-11640053 | None:intergenic | 45.0% | |
| GGAGTTCCCATTGTTAGAGT+TGG | + | chr5_2:11640103-11640122 | None:intergenic | 45.0% | |
| GATTCTTGCATGGTCTGAAC+TGG | - | chr5_2:11640237-11640256 | Msa0756990:CDS | 45.0% | |
| TAAGATCCTTTGGTTGCAGC+AGG | + | chr5_2:11640374-11640393 | None:intergenic | 45.0% | |
| !! | CAGGTTGGGTTTTCATACGA+CGG | - | chr5_2:11640398-11640417 | Msa0756990:intron | 45.0% |
| ! | GGGTTTTCATACGACGGAAA+TGG | - | chr5_2:11640404-11640423 | Msa0756990:intron | 45.0% |
| ! | ATGGGGTCAAAAGGTATGGT+TGG | - | chr5_2:11640546-11640565 | Msa0756990:intron | 45.0% |
| GGTGATCCTGCAATTGTAAG+TGG | - | chr5_2:11640629-11640648 | Msa0756990:intron | 45.0% | |
| GTAGAGGAAACTGAGTCGTA+AGG | - | chr5_2:11640744-11640763 | Msa0756990:intron | 45.0% | |
| GAGTCGTAAGGAAAGAAGGA+AGG | - | chr5_2:11640756-11640775 | Msa0756990:intron | 45.0% | |
| ATTGTGCTCCCACTGACAAA+TGG | - | chr5_2:11640909-11640928 | Msa0756990:intron | 45.0% | |
| TCCCACTGACAAATGGATAG+CGG | - | chr5_2:11640916-11640935 | Msa0756990:intron | 45.0% | |
| TCCGCTATCCATTTGTCAGT+GGG | + | chr5_2:11640920-11640939 | None:intergenic | 45.0% | |
| ATCCGCTATCCATTTGTCAG+TGG | + | chr5_2:11640921-11640940 | None:intergenic | 45.0% | |
| GGATAACGCATATGTGCTCA+AGG | + | chr5_2:11641055-11641074 | None:intergenic | 45.0% | |
| AATAACGCCTTGCATAGGAC+GGG | + | chr5_2:11641168-11641187 | None:intergenic | 45.0% | |
| GAATAACGCCTTGCATAGGA+CGG | + | chr5_2:11641169-11641188 | None:intergenic | 45.0% | |
| ! | CCTATGCAAGGCGTTATTCA+CGG | - | chr5_2:11641170-11641189 | Msa0756990:intron | 45.0% |
| ATAACTGAATTTGGGGGCTC+TGG | - | chr5_2:11641250-11641269 | Msa0756990:intron | 45.0% | |
| GGGAACATTGAGCTCCAAAT+AGG | + | chr5_2:11641514-11641533 | None:intergenic | 45.0% | |
| GATGACCTGCAATACAGTAG+AGG | + | chr5_2:11641600-11641619 | None:intergenic | 45.0% | |
| CTGTATTGCAGGTCATCATC+TGG | - | chr5_2:11641603-11641622 | Msa0756990:intron | 45.0% | |
| ! | TGGGTGATGGTATACCTTAC+GGG | + | chr5_2:11641705-11641724 | None:intergenic | 45.0% |
| ! | ATTTGCACGAGCTTAGCTCT+GGG | + | chr5_2:11641964-11641983 | None:intergenic | 45.0% |
| GGCAGAGGAGACAATTTATC+GGG | + | chr5_2:11642044-11642063 | None:intergenic | 45.0% | |
| TGAGTATCTGACATTGGCAG+AGG | + | chr5_2:11642059-11642078 | None:intergenic | 45.0% | |
| GCAAAAGAATCAACCAGCTG+TGG | + | chr5_2:11642206-11642225 | None:intergenic | 45.0% | |
| AGAATACTGAGCCCTGCATT+TGG | + | chr5_2:11642268-11642287 | None:intergenic | 45.0% | |
| !! | TTAAAGGCAAGTGGTTCTGG+AGG | - | chr5_2:11642552-11642571 | Msa0756990:intron | 45.0% |
| !! | TAAAGGCAAGTGGTTCTGGA+GGG | - | chr5_2:11642553-11642572 | Msa0756990:intron | 45.0% |
| GGCTCTTAAAACCTCAACCA+GGG | - | chr5_2:11642574-11642593 | Msa0756990:intron | 45.0% | |
| GCTCTTAAAACCTCAACCAG+GGG | - | chr5_2:11642575-11642594 | Msa0756990:intron | 45.0% | |
| CACCCCAAGAGAGACTTAAA+AGG | - | chr5_2:11642610-11642629 | Msa0756990:intron | 45.0% | |
| ! | TCGCTCCTGTTCTCTTTTCT+TGG | + | chr5_2:11642777-11642796 | None:intergenic | 45.0% |
| GTAGAAGTCCAAGTAGAAGC+AGG | - | chr5_2:11643093-11643112 | Msa0756990:CDS | 45.0% | |
| AGAAGTCCAAGTAGAAGCAG+GGG | - | chr5_2:11643095-11643114 | Msa0756990:CDS | 45.0% | |
| ! | TTTCTTTTCCTGTGCCTCAG+AGG | - | chr5_2:11643231-11643250 | Msa0756990:CDS | 45.0% |
| TGATGAGGAGTAAACCTCTG+AGG | + | chr5_2:11643248-11643267 | None:intergenic | 45.0% | |
| TCAGGCTAAGAAACCGTTCA+AGG | - | chr5_2:11643305-11643324 | Msa0756990:five_prime_UTR | 45.0% | |
| ATTGCTCCCAAGTGGTTAGA+AGG | - | chr5_2:11643388-11643407 | Msa0756990:five_prime_UTR | 45.0% | |
| !!! | ATTATTATGTTTTTTTTTAA+AGG | + | chr5_2:11642141-11642160 | None:intergenic | 5.0% |
| AGGAAGGAAGATGTGGCATG+AGG | - | chr5_2:11637450-11637469 | Msa0756990:intron | 50.0% | |
| AGATGTGGCATGAGGCAAGA+AGG | - | chr5_2:11637458-11637477 | Msa0756990:intron | 50.0% | |
| CAAGCCACCGAAGATCAACA+AGG | - | chr5_2:11637631-11637650 | Msa0756990:CDS | 50.0% | |
| TCCCACTAAAAAGCCGGACA+AGG | + | chr5_2:11638573-11638592 | None:intergenic | 50.0% | |
| TTCCTCCGCCCTTTCTCTTT+GGG | - | chr5_2:11638677-11638696 | Msa0756990:intron | 50.0% | |
| GGTTTGCACCCCAAAGAGAA+AGG | + | chr5_2:11638689-11638708 | None:intergenic | 50.0% | |
| !! | CTTTGGGGTGCAAACCTAGT+TGG | - | chr5_2:11638693-11638712 | Msa0756990:intron | 50.0% |
| TTCCTCAGGATACCCTGGAA+TGG | - | chr5_2:11638837-11638856 | Msa0756990:intron | 50.0% | |
| TCCTCAGGATACCCTGGAAT+GGG | - | chr5_2:11638838-11638857 | Msa0756990:intron | 50.0% | |
| CACGCCCATCAAATCTGCAA+AGG | + | chr5_2:11638980-11638999 | None:intergenic | 50.0% | |
| CTAATCCCTGGATGTCAGGT+TGG | + | chr5_2:11639278-11639297 | None:intergenic | 50.0% | |
| ! | ATGTTGCAAAGCGTCCTCGT+CGG | + | chr5_2:11639346-11639365 | None:intergenic | 50.0% |
| CTGCTCCATTTGCATCAGAC+AGG | - | chr5_2:11639394-11639413 | Msa0756990:CDS | 50.0% | |
| CCCAACCTGTCTGATGCAAA+TGG | + | chr5_2:11639402-11639421 | None:intergenic | 50.0% | |
| TGAGGAAGACGAAGATGACG+AGG | - | chr5_2:11640460-11640479 | Msa0756990:intron | 50.0% | |
| CGAAGATGACGAGGATGATG+AGG | - | chr5_2:11640469-11640488 | Msa0756990:intron | 50.0% | |
| AGAGAGAGCGAGAAGCTACA+CGG | - | chr5_2:11640797-11640816 | Msa0756990:intron | 50.0% | |
| TGATGTAGCACACGAGTTCC+AGG | + | chr5_2:11640826-11640845 | None:intergenic | 50.0% | |
| TGGAACTCGTGTGCTACATC+AGG | - | chr5_2:11640825-11640844 | Msa0756990:intron | 50.0% | |
| ATAACGCCTTGCATAGGACG+GGG | + | chr5_2:11641167-11641186 | None:intergenic | 50.0% | |
| CCGTGAATAACGCCTTGCAT+AGG | + | chr5_2:11641173-11641192 | None:intergenic | 50.0% | |
| CTGGAGAAGCAGATGGAACT+AGG | - | chr5_2:11641269-11641288 | Msa0756990:intron | 50.0% | |
| GATGGAGGAGGCTTCCTATT+TGG | - | chr5_2:11641497-11641516 | Msa0756990:intron | 50.0% | |
| TTGCATGTCGATCCTGCTTC+TGG | - | chr5_2:11641642-11641661 | Msa0756990:CDS | 50.0% | |
| TCAACGGATACACCAGAAGC+AGG | + | chr5_2:11641657-11641676 | None:intergenic | 50.0% | |
| AAGTCTTGAAGCCACCCGTA+AGG | - | chr5_2:11641688-11641707 | Msa0756990:CDS | 50.0% | |
| GTGATGGTATACCTTACGGG+TGG | + | chr5_2:11641702-11641721 | None:intergenic | 50.0% | |
| !! | GCTCTGGGGATTGATGTGTA+CGG | + | chr5_2:11641949-11641968 | None:intergenic | 50.0% |
| !! | TTTGCACGAGCTTAGCTCTG+GGG | + | chr5_2:11641963-11641982 | None:intergenic | 50.0% |
| CATTTGCACGAGCTTAGCTC+TGG | + | chr5_2:11641965-11641984 | None:intergenic | 50.0% | |
| CACGAGGAGATGTGGGATAA+TGG | + | chr5_2:11642230-11642249 | None:intergenic | 50.0% | |
| CTGTGTACACGAGGAGATGT+GGG | + | chr5_2:11642237-11642256 | None:intergenic | 50.0% | |
| ACAGCACACTCTCCAAATGC+AGG | - | chr5_2:11642253-11642272 | Msa0756990:intron | 50.0% | |
| CAGCACACTCTCCAAATGCA+GGG | - | chr5_2:11642254-11642273 | Msa0756990:intron | 50.0% | |
| ! | CTTTTCCACAGCACACCTTC+AGG | - | chr5_2:11642513-11642532 | Msa0756990:intron | 50.0% |
| ! | TTTGCTAGTGCTGAGCCTGA+AGG | + | chr5_2:11642531-11642550 | None:intergenic | 50.0% |
| GGGCTCTTAAAACCTCAACC+AGG | - | chr5_2:11642573-11642592 | Msa0756990:intron | 50.0% | |
| TCTTTCTTCTCCCCTGGTTG+AGG | + | chr5_2:11642588-11642607 | None:intergenic | 50.0% | |
| GGTGTTTCTTTCTTCTCCCC+TGG | + | chr5_2:11642594-11642613 | None:intergenic | 50.0% | |
| AAAGAGAACAGGAGCGACAG+AGG | - | chr5_2:11642780-11642799 | Msa0756990:intron | 50.0% | |
| AACGACTGTAACTCCTGCTG+CGG | + | chr5_2:11642856-11642875 | None:intergenic | 50.0% | |
| !!! | GCCCTTGCTTTGTTTTCCTC+TGG | - | chr5_2:11643029-11643048 | Msa0756990:intron | 50.0% |
| ! | TAAGGAGAGCGTGAACGATG+CGG | + | chr5_2:11643182-11643201 | None:intergenic | 50.0% |
| CTCCTTATTCTCGTTCTCCC+AGG | - | chr5_2:11643195-11643214 | Msa0756990:CDS | 50.0% | |
| CACCTGGGAGAACGAGAATA+AGG | + | chr5_2:11643200-11643219 | None:intergenic | 50.0% | |
| GTGGCATGAGGCAAGAAGGT+CGG | - | chr5_2:11637462-11637481 | Msa0756990:intron | 55.0% | |
| GGCAAGAAGGTCGGAGAAGA+AGG | - | chr5_2:11637471-11637490 | Msa0756990:intron | 55.0% | |
| GAGCAGCGTCCATCATGTCA+TGG | + | chr5_2:11637498-11637517 | None:intergenic | 55.0% | |
| ! | GATCACCGCGACGTTTTGCA+AGG | + | chr5_2:11637549-11637568 | None:intergenic | 55.0% |
| CAAACTCTGCTGCCATACCC+TGG | - | chr5_2:11638429-11638448 | Msa0756990:intron | 55.0% | |
| GTTCCTCCGCCCTTTCTCTT+TGG | - | chr5_2:11638676-11638695 | Msa0756990:intron | 55.0% | |
| TCCTCCGCCCTTTCTCTTTG+GGG | - | chr5_2:11638678-11638697 | Msa0756990:intron | 55.0% | |
| TGCACCCCAAAGAGAAAGGG+CGG | + | chr5_2:11638685-11638704 | None:intergenic | 55.0% | |
| ! | TCCCATTCCAGGGTATCCTG+AGG | + | chr5_2:11638842-11638861 | None:intergenic | 55.0% |
| !! | AGCATCGGCGTAGAGGATGT+CGG | - | chr5_2:11639111-11639130 | Msa0756990:intron | 55.0% |
| ATCAGGCCAACCTGACATCC+AGG | - | chr5_2:11639269-11639288 | Msa0756990:intron | 55.0% | |
| TCAGGCCAACCTGACATCCA+GGG | - | chr5_2:11639270-11639289 | Msa0756990:intron | 55.0% | |
| TGCAAATGGAGCAGCAGCCT+TGG | + | chr5_2:11639388-11639407 | None:intergenic | 55.0% | |
| TCACAGCCTGCTGCAACCAA+AGG | - | chr5_2:11640365-11640384 | Msa0756990:CDS | 55.0% | |
| CGAGAAGCTACACGGATACC+TGG | - | chr5_2:11640805-11640824 | Msa0756990:intron | 55.0% | |
| TGCTACATCAGGACCCCTAC+CGG | - | chr5_2:11640836-11640855 | Msa0756990:intron | 55.0% | |
| GCAGGTCAAGGTCCAGATCA+CGG | - | chr5_2:11641134-11641153 | Msa0756990:intron | 55.0% | |
| GCAGATGGAACTAGGCGTGA+AGG | - | chr5_2:11641277-11641296 | Msa0756990:intron | 55.0% | |
| ACTCGAGATGTGGGAGATCG+CGG | + | chr5_2:11641313-11641332 | None:intergenic | 55.0% | |
| CATTAAACCGGTCGGAGCAC+TGG | - | chr5_2:11641338-11641357 | Msa0756990:CDS | 55.0% | |
| TAAAGGTCCAGTGCTCCGAC+CGG | + | chr5_2:11641348-11641367 | None:intergenic | 55.0% | |
| TTGTCAGGGTAGCTGCCAAG+AGG | - | chr5_2:11641472-11641491 | Msa0756990:intron | 55.0% | |
| GGTAGCTGCCAAGAGGAAGA+TGG | - | chr5_2:11641479-11641498 | Msa0756990:intron | 55.0% | |
| AGCTGCCAAGAGGAAGATGG+AGG | - | chr5_2:11641482-11641501 | Msa0756990:intron | 55.0% | |
| TGCCAAGAGGAAGATGGAGG+AGG | - | chr5_2:11641485-11641504 | Msa0756990:intron | 55.0% | |
| AGCCTCCTCCATCTTCCTCT+TGG | + | chr5_2:11641490-11641509 | None:intergenic | 55.0% | |
| TGTGGACATGTCAGCCAAGG+GGG | + | chr5_2:11642188-11642207 | None:intergenic | 55.0% | |
| CTGTGGACATGTCAGCCAAG+GGG | + | chr5_2:11642189-11642208 | None:intergenic | 55.0% | |
| GCTGTGGACATGTCAGCCAA+GGG | + | chr5_2:11642190-11642209 | None:intergenic | 55.0% | |
| AGCTGTGGACATGTCAGCCA+AGG | + | chr5_2:11642191-11642210 | None:intergenic | 55.0% | |
| TTGGCTGACATGTCCACAGC+TGG | - | chr5_2:11642190-11642209 | Msa0756990:intron | 55.0% | |
| GCTGTGTACACGAGGAGATG+TGG | + | chr5_2:11642238-11642257 | None:intergenic | 55.0% | |
| ! | GAGAGTGTGCTGTGTACACG+AGG | + | chr5_2:11642246-11642265 | None:intergenic | 55.0% |
| GTTACAGTCGTTCCCCACCA+AGG | - | chr5_2:11642864-11642883 | Msa0756990:intron | 55.0% | |
| CTGGAACCCCTGCTTCTACT+TGG | + | chr5_2:11643104-11643123 | None:intergenic | 55.0% | |
| CAAGTTCTCGCTCCCGTTCT+CGG | - | chr5_2:11643135-11643154 | Msa0756990:CDS | 55.0% | |
| !! | GGAGTAAACCTCTGAGGCAC+AGG | + | chr5_2:11643242-11643261 | None:intergenic | 55.0% |
| GTATGCATGAAAGGCCAGCG+AGG | - | chr5_2:11643343-11643362 | Msa0756990:intron | 55.0% | |
| AGATTGCACACAAGCCTCGC+TGG | + | chr5_2:11643360-11643379 | None:intergenic | 55.0% | |
| ACTCTGCTGCCATACCCTGG+AGG | - | chr5_2:11638432-11638451 | Msa0756990:intron | 60.0% | |
| ACCCCAAAGAGAAAGGGCGG+AGG | + | chr5_2:11638682-11638701 | None:intergenic | 60.0% | |
| GGAGTCGAGTGTTACCGCTG+AGG | + | chr5_2:11639907-11639926 | None:intergenic | 60.0% | |
| CCTTGCATAGGACGGGGAGT+AGG | + | chr5_2:11641161-11641180 | None:intergenic | 60.0% | |
| CCTACTCCCCGTCCTATGCA+AGG | - | chr5_2:11641158-11641177 | Msa0756990:intron | 60.0% | |
| GTGGACATGTCAGCCAAGGG+GGG | + | chr5_2:11642187-11642206 | None:intergenic | 60.0% | |
| ! | CTGAGCCTGAAGGTGTGCTG+TGG | + | chr5_2:11642521-11642540 | None:intergenic | 60.0% |
| TGCGAGAAGGGGACCGAGAA+CGG | + | chr5_2:11643151-11643170 | None:intergenic | 60.0% | |
| CGGAGAACGAGTGCGAGAAG+GGG | + | chr5_2:11643162-11643181 | None:intergenic | 60.0% | |
| GCGGAGAACGAGTGCGAGAA+GGG | + | chr5_2:11643163-11643182 | None:intergenic | 60.0% | |
| TGCGGAGAACGAGTGCGAGA+AGG | + | chr5_2:11643164-11643183 | None:intergenic | 60.0% | |
| CGGGGAGTAGGACCGTGATC+TGG | + | chr5_2:11641149-11641168 | None:intergenic | 65.0% | |
| !! | GGGGGCTCTGGAGAAGCAGA+TGG | - | chr5_2:11641262-11641281 | Msa0756990:intron | 65.0% |
| CGAGATGTGGGAGATCGCGG+TGG | + | chr5_2:11641310-11641329 | None:intergenic | 65.0% | |
| CCAAGGGGGGTCAGCTGGTA+AGG | + | chr5_2:11642174-11642193 | None:intergenic | 65.0% | |
| CCTTACCAGCTGACCCCCCT+TGG | - | chr5_2:11642171-11642190 | Msa0756990:intron | 65.0% | |
| GCGAGAAGGGGACCGAGAAC+GGG | + | chr5_2:11643150-11643169 | None:intergenic | 65.0% | |
| GTCAGCCAAGGGGGGTCAGC+TGG | + | chr5_2:11642179-11642198 | None:intergenic | 70.0% | |
| ! | ATAGGCGTCGCAGCCGCAGC+AGG | - | chr5_2:11642840-11642859 | Msa0756990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11637313 | 11643428 | 11637313 | ID=Msa0756990;Name=Msa0756990 |
| chr5_2 | mRNA | 11637313 | 11643428 | 11637313 | ID=Msa0756990-mRNA-1;Parent=Msa0756990;Name=Msa0756990-mRNA-1;_AED=0.20;_eAED=0.20;_QI=123|0.92|0.92|1|0.92|0.85|14|0|585 |
| chr5_2 | exon | 11637313 | 11637448 | 11637313 | ID=Msa0756990-mRNA-1:exon:5273;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11637525 | 11637662 | 11637525 | ID=Msa0756990-mRNA-1:exon:5272;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11637856 | 11637994 | 11637856 | ID=Msa0756990-mRNA-1:exon:5271;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11638081 | 11638217 | 11638081 | ID=Msa0756990-mRNA-1:exon:5270;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11639032 | 11639127 | 11639032 | ID=Msa0756990-mRNA-1:exon:5269;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11639394 | 11639603 | 11639394 | ID=Msa0756990-mRNA-1:exon:5268;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11639706 | 11639753 | 11639706 | ID=Msa0756990-mRNA-1:exon:5267;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11639884 | 11639993 | 11639884 | ID=Msa0756990-mRNA-1:exon:5266;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11640098 | 11640386 | 11640098 | ID=Msa0756990-mRNA-1:exon:5265;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11641326 | 11641401 | 11641326 | ID=Msa0756990-mRNA-1:exon:5264;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11641613 | 11641755 | 11641613 | ID=Msa0756990-mRNA-1:exon:5263;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11641858 | 11641896 | 11641858 | ID=Msa0756990-mRNA-1:exon:5262;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11643085 | 11643338 | 11643085 | ID=Msa0756990-mRNA-1:exon:5261;Parent=Msa0756990-mRNA-1 |
| chr5_2 | exon | 11643363 | 11643428 | 11643363 | ID=Msa0756990-mRNA-1:exon:5260;Parent=Msa0756990-mRNA-1 |
| chr5_2 | five_prime_UTR | 11643363 | 11643428 | 11643363 | ID=Msa0756990-mRNA-1:five_prime_utr;Parent=Msa0756990-mRNA-1 |
| chr5_2 | five_prime_UTR | 11643282 | 11643338 | 11643282 | ID=Msa0756990-mRNA-1:five_prime_utr;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11643085 | 11643281 | 11643085 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11641858 | 11641896 | 11641858 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11641613 | 11641755 | 11641613 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11641326 | 11641401 | 11641326 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11640098 | 11640386 | 11640098 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11639884 | 11639993 | 11639884 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11639706 | 11639753 | 11639706 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11639394 | 11639603 | 11639394 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11639032 | 11639127 | 11639032 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11638081 | 11638217 | 11638081 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11637856 | 11637994 | 11637856 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11637525 | 11637662 | 11637525 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| chr5_2 | CDS | 11637313 | 11637448 | 11637313 | ID=Msa0756990-mRNA-1:cds;Parent=Msa0756990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
