Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717240 | Msa0799690 | 0.848697 | 5.197310e-60 | -8.615850e-47 |
| Msa0717240 | Msa0876030 | 0.822364 | 2.464501e-53 | -8.615850e-47 |
| Msa0504360 | Msa0717240 | 0.802413 | 5.677919e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGAATCAACGGCATCTT+TGG | 0.195047 | 5_1:+10940996 | None:intergenic |
| TGTATCAAATTGGAAACTTT+TGG | 0.229973 | 5_1:-10941954 | Msa0717240:three_prime_UTR |
| AACAAACATTAGTCAAAATT+TGG | 0.230568 | 5_1:-10944578 | Msa0717240:CDS |
| GTACCACAATTAGTAATATT+AGG | 0.239236 | 5_1:-10942081 | Msa0717240:three_prime_UTR |
| AAAACTTATAACATGAAATA+AGG | 0.243688 | 5_1:+10940967 | None:intergenic |
| CATTGTTACCTTTATTATAA+AGG | 0.264613 | 5_1:-10942103 | Msa0717240:three_prime_UTR |
| TTGTGGTACCTTTATAATAA+AGG | 0.276514 | 5_1:+10942095 | None:intergenic |
| AAAGATAGAGTTTGTGGTAT+TGG | 0.299062 | 5_1:+10944819 | None:intergenic |
| TGATTGATTCAAGTCGTTCT+TGG | 0.308675 | 5_1:+10944524 | None:intergenic |
| TTGAAGGGAATAGAAATGTT+TGG | 0.325803 | 5_1:-10941917 | Msa0717240:three_prime_UTR |
| AAACTAAGTTCCGGGATATA+AGG | 0.328511 | 5_1:+10941802 | None:intergenic |
| TTTCTTTGAATTTCCTTGCT+GGG | 0.331179 | 5_1:+10941190 | None:intergenic |
| AAAGAATCAACGGCATCTTT+GGG | 0.334986 | 5_1:+10940997 | None:intergenic |
| AGAAAGTAAAGCAACCAATT+TGG | 0.337679 | 5_1:-10942153 | Msa0717240:intron |
| CCATGACATATGTTTCTTCA+TGG | 0.347187 | 5_1:+10942038 | None:intergenic |
| AGATATTAAATTTGTTGATC+AGG | 0.347606 | 5_1:+10942267 | None:intergenic |
| GGAAGTGTAGTGTATCAAAT+TGG | 0.351192 | 5_1:-10941964 | Msa0717240:three_prime_UTR |
| TGAAGGGAATAGAAATGTTT+GGG | 0.351690 | 5_1:-10941916 | Msa0717240:three_prime_UTR |
| TACCACAATTAGTAATATTA+GGG | 0.386434 | 5_1:-10942080 | Msa0717240:three_prime_UTR |
| AGTGAATTACAAATAACTTA+TGG | 0.389288 | 5_1:-10941021 | Msa0717240:three_prime_UTR |
| GAACTTCAAAACTAAGTTCC+GGG | 0.417808 | 5_1:+10941794 | None:intergenic |
| AAGTTCAAAGATAGAGTTTG+TGG | 0.421100 | 5_1:+10944813 | None:intergenic |
| TCTCTGTCACCTGACCAAAT+TGG | 0.425560 | 5_1:+10942139 | None:intergenic |
| AAACTTATAACATGAAATAA+GGG | 0.432586 | 5_1:+10940968 | None:intergenic |
| TAATATTAGGGATCAAAAGT+TGG | 0.446472 | 5_1:-10942068 | Msa0717240:three_prime_UTR |
| ATCCCTAATATTACTAATTG+TGG | 0.449342 | 5_1:+10942078 | None:intergenic |
| TGAACTTCAAAACTAAGTTC+CGG | 0.450013 | 5_1:+10941793 | None:intergenic |
| AGCAAGGAAATTCAAAGAAA+AGG | 0.453283 | 5_1:-10941187 | Msa0717240:three_prime_UTR |
| GATATTAAATTTGTTGATCA+GGG | 0.460938 | 5_1:+10942268 | None:intergenic |
| CATGACATATGTTTCTTCAT+GGG | 0.470409 | 5_1:+10942039 | None:intergenic |
| TTCTTTGAATTTCCTTGCTG+GGG | 0.492314 | 5_1:+10941191 | None:intergenic |
| GAAGCTCTTGTCTAACTCAA+TGG | 0.498233 | 5_1:-10942002 | Msa0717240:three_prime_UTR |
| TTTATGTATCCATGTGGCAT+TGG | 0.503404 | 5_1:+10941729 | None:intergenic |
| GTAAAGCAACCAATTTGGTC+AGG | 0.506279 | 5_1:-10942148 | Msa0717240:intron |
| GATAGAGTTTGTGGTATTGG+AGG | 0.508054 | 5_1:+10944822 | None:intergenic |
| AATTCAAAGAAAAGGAGAGA+AGG | 0.523615 | 5_1:-10941179 | Msa0717240:three_prime_UTR |
| TTTGTGGTATTGGAGGCTAT+TGG | 0.529301 | 5_1:+10944829 | None:intergenic |
| TCAATGGAAGGACAAGTTGA+AGG | 0.530417 | 5_1:-10941986 | Msa0717240:three_prime_UTR |
| CCATGAAGAAACATATGTCA+TGG | 0.550523 | 5_1:-10942038 | Msa0717240:three_prime_UTR |
| ACAACATGCAAATTGAGCTC+AGG | 0.553855 | 5_1:-10941153 | Msa0717240:intron |
| TATGCAGTTGCCTTATATCC+CGG | 0.571134 | 5_1:-10941812 | Msa0717240:three_prime_UTR |
| TTTGAAGTTCATGACTTGCA+AGG | 0.582315 | 5_1:-10941781 | Msa0717240:three_prime_UTR |
| CTCTTGTCTAACTCAATGGA+AGG | 0.588123 | 5_1:-10941998 | Msa0717240:three_prime_UTR |
| CAATGGAAGGACAAGTTGAA+GGG | 0.589143 | 5_1:-10941985 | Msa0717240:three_prime_UTR |
| AAGAATCAACGGCATCTTTG+GGG | 0.607875 | 5_1:+10940998 | None:intergenic |
| AGGGATAAACAAAGAATCAA+CGG | 0.609663 | 5_1:+10940987 | None:intergenic |
| GTTGAAGTTCCAATGCCACA+TGG | 0.643076 | 5_1:-10941738 | Msa0717240:three_prime_UTR |
| GAACTCATAGAACCCCAGCA+AGG | 0.686860 | 5_1:-10941203 | Msa0717240:three_prime_UTR |
| AGGTAACAATGATCACCACA+TGG | 0.719423 | 5_1:+10942115 | None:intergenic |
| TCAGGTGACAGAGAACCATG+TGG | 0.855850 | 5_1:-10942130 | Msa0717240:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATTAATTAATTAA+CGG | + | chr5_1:10943751-10943770 | None:intergenic | 0.0% |
| !!! | TTCATAATTCTAAAAAATTA+TGG | + | chr5_1:10941244-10941263 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTATTGTATATT+TGG | - | chr5_1:10941325-10941344 | Msa0717240:intron | 10.0% |
| !!! | CTTTTACTATTTAATATATT+AGG | - | chr5_1:10943123-10943142 | Msa0717240:intron | 10.0% |
| !!! | AAACAACTTCTTATTTTTTA+AGG | - | chr5_1:10941022-10941041 | Msa0717240:three_prime_UTR | 15.0% |
| !!! | TTGTTCAAATTATTTTTTGT+AGG | - | chr5_1:10941189-10941208 | Msa0717240:three_prime_UTR | 15.0% |
| !!! | CATTTTATTGTTTTCATTTT+TGG | - | chr5_1:10941291-10941310 | Msa0717240:intron | 15.0% |
| !!! | TTTTTATTGTATATTTGGAT+AGG | - | chr5_1:10941330-10941349 | Msa0717240:intron | 15.0% |
| !! | ATATCATAGATAATTAAACA+AGG | + | chr5_1:10941540-10941559 | None:intergenic | 15.0% |
| !!! | AGATTAATAAACGTTTTTTT+AGG | - | chr5_1:10941612-10941631 | Msa0717240:intron | 15.0% |
| !!! | CACAAATAAAATAATTTGTT+CGG | + | chr5_1:10942276-10942295 | None:intergenic | 15.0% |
| !! | AAATCTTTATATGAAAAAGT+TGG | + | chr5_1:10943012-10943031 | None:intergenic | 15.0% |
| !! | TACTATTTAATATATTAGGA+AGG | - | chr5_1:10943127-10943146 | Msa0717240:intron | 15.0% |
| !!! | TAATATAGTTTTAAAGTGTA+AGG | + | chr5_1:10944092-10944111 | None:intergenic | 15.0% |
| !! | AGATAAGAAAATATAGTATA+TGG | + | chr5_1:10944312-10944331 | None:intergenic | 15.0% |
| !! | CTTATCTACTAAAATATATT+TGG | - | chr5_1:10944325-10944344 | Msa0717240:intron | 15.0% |
| !!! | TTTTTTTTTCTTTTCCTTTT+TGG | - | chr5_1:10944712-10944731 | Msa0717240:intron | 15.0% |
| !!! | TTTTTTTTCTTTTCCTTTTT+GGG | - | chr5_1:10944713-10944732 | Msa0717240:intron | 15.0% |
| !! | GGTTATTATTTAAATAGTAA+GGG | + | chr5_1:10944848-10944867 | None:intergenic | 15.0% |
| !! | TGGTTATTATTTAAATAGTA+AGG | + | chr5_1:10944849-10944868 | None:intergenic | 15.0% |
| !! | TTTGATTAAATGTATATTTC+AGG | - | chr5_1:10944880-10944899 | Msa0717240:intron | 15.0% |
| !! | AAACTTATAACATGAAATAA+GGG | + | chr5_1:10944985-10945004 | None:intergenic | 15.0% |
| !! | AAAACTTATAACATGAAATA+AGG | + | chr5_1:10944986-10945005 | None:intergenic | 15.0% |
| !! | AACAAACATTAGTCAAAATT+TGG | - | chr5_1:10941372-10941391 | Msa0717240:intron | 20.0% |
| !! | TAGTCACGAAAATATAAAAA+GGG | + | chr5_1:10941843-10941862 | None:intergenic | 20.0% |
| !! | TTAGTCACGAAAATATAAAA+AGG | + | chr5_1:10941844-10941863 | None:intergenic | 20.0% |
| !!! | ATATTTTCGTGACTAATTTT+AGG | - | chr5_1:10941848-10941867 | Msa0717240:three_prime_UTR | 20.0% |
| !!! | TATTTTCGTGACTAATTTTA+GGG | - | chr5_1:10941849-10941868 | Msa0717240:three_prime_UTR | 20.0% |
| !! | TGATGTTTCATAATTAACTA+CGG | - | chr5_1:10942118-10942137 | Msa0717240:three_prime_UTR | 20.0% |
| !!! | TCGTTCATTTTAAAGTTATT+CGG | - | chr5_1:10942357-10942376 | Msa0717240:intron | 20.0% |
| !!! | TCTGTTATTTGCATATATAT+CGG | + | chr5_1:10942388-10942407 | None:intergenic | 20.0% |
| !! | ATCATTTGTAGAAATACAAA+TGG | + | chr5_1:10942527-10942546 | None:intergenic | 20.0% |
| !! | ATGATTAACAAATGATTGAA+TGG | - | chr5_1:10942781-10942800 | Msa0717240:intron | 20.0% |
| !!! | TTTTTTACTTTGTTTATGTG+TGG | + | chr5_1:10942983-10943002 | None:intergenic | 20.0% |
| !! | TACAAAAACATCAAAGAAAA+TGG | - | chr5_1:10943414-10943433 | Msa0717240:intron | 20.0% |
| !!! | GTGGTCAAATTTTTTTAAAT+TGG | + | chr5_1:10943508-10943527 | None:intergenic | 20.0% |
| !! | AAAAAATGCAAAAAATATGC+TGG | + | chr5_1:10943570-10943589 | None:intergenic | 20.0% |
| !!! | GATATTAAATTTGTTGATCA+GGG | + | chr5_1:10943685-10943704 | None:intergenic | 20.0% |
| !!! | AGATATTAAATTTGTTGATC+AGG | + | chr5_1:10943686-10943705 | None:intergenic | 20.0% |
| !! | CATTGTTACCTTTATTATAA+AGG | - | chr5_1:10943847-10943866 | Msa0717240:intron | 20.0% |
| !! | TACCACAATTAGTAATATTA+GGG | - | chr5_1:10943870-10943889 | Msa0717240:intron | 20.0% |
| !! | GAAAAAGAATTATGTTTGAA+GGG | - | chr5_1:10944018-10944037 | Msa0717240:intron | 20.0% |
| !!! | AATACAAAGTTTGAAATTGA+AGG | - | chr5_1:10944390-10944409 | Msa0717240:intron | 20.0% |
| !! | AAAAATGTAGTTGAAAAGAT+TGG | - | chr5_1:10944438-10944457 | Msa0717240:intron | 20.0% |
| !! | AAAATGTAGTTGAAAAGATT+GGG | - | chr5_1:10944439-10944458 | Msa0717240:intron | 20.0% |
| !! | AGGAAAAGAAAAAAAAAATG+AGG | + | chr5_1:10944709-10944728 | None:intergenic | 20.0% |
| !! | TTAATCAAAGATCATTAGAA+TGG | + | chr5_1:10944869-10944888 | None:intergenic | 20.0% |
| !! | AGTGAATTACAAATAACTTA+TGG | - | chr5_1:10944929-10944948 | Msa0717240:intron | 20.0% |
| ! | ATATTTGGATAGGAAAAACA+TGG | - | chr5_1:10941340-10941359 | Msa0717240:intron | 25.0% |
| ! | ACTAAAAATCACATTAGAGT+CGG | + | chr5_1:10941912-10941931 | None:intergenic | 25.0% |
| ! | AAATAATATTGACCACAACA+TGG | + | chr5_1:10942061-10942080 | None:intergenic | 25.0% |
| ! | CTCTCAATTGATGTTAATTA+TGG | + | chr5_1:10942093-10942112 | None:intergenic | 25.0% |
| !!! | ACACAACTATTTCTGTATTT+TGG | + | chr5_1:10942207-10942226 | None:intergenic | 25.0% |
| !! | TTTGTTGTCTGCATATATAT+CGG | - | chr5_1:10942226-10942245 | Msa0717240:intron | 25.0% |
| !!! | TCGGTCATTTTAAAGTTATT+TGG | + | chr5_1:10942257-10942276 | None:intergenic | 25.0% |
| !! | CTGTTATTTGCATATATATC+GGG | + | chr5_1:10942387-10942406 | None:intergenic | 25.0% |
| !!! | ACACACATATTTCTGTATTT+TGG | - | chr5_1:10942407-10942426 | Msa0717240:intron | 25.0% |
| ! | TGAAGGCAATATAATTATGA+AGG | + | chr5_1:10942722-10942741 | None:intergenic | 25.0% |
| ! | AAAGAGAAGCTTAAAACATT+TGG | + | chr5_1:10943107-10943126 | None:intergenic | 25.0% |
| ! | ATATATTAGGAAGGAATATG+AGG | - | chr5_1:10943136-10943155 | Msa0717240:intron | 25.0% |
| ! | ATACTTCTTATAGAGCTTAT+TGG | - | chr5_1:10943263-10943282 | Msa0717240:intron | 25.0% |
| ! | TTCTGTGAATCAAAATATGT+AGG | - | chr5_1:10943386-10943405 | Msa0717240:intron | 25.0% |
| ! | TTGTGGTACCTTTATAATAA+AGG | + | chr5_1:10943858-10943877 | None:intergenic | 25.0% |
| ! | GTACCACAATTAGTAATATT+AGG | - | chr5_1:10943869-10943888 | Msa0717240:intron | 25.0% |
| ! | ATCCCTAATATTACTAATTG+TGG | + | chr5_1:10943875-10943894 | None:intergenic | 25.0% |
| ! | TAATATTAGGGATCAAAAGT+TGG | - | chr5_1:10943882-10943901 | Msa0717240:intron | 25.0% |
| !! | TGTATCAAATTGGAAACTTT+TGG | - | chr5_1:10943996-10944015 | Msa0717240:intron | 25.0% |
| ! | GGAAAAAGAATTATGTTTGA+AGG | - | chr5_1:10944017-10944036 | Msa0717240:intron | 25.0% |
| ! | TAGAAATGTTTGGGAAAAAT+AGG | - | chr5_1:10944043-10944062 | Msa0717240:intron | 25.0% |
| ! | TTGAAATTGAAGGAAGTTAA+TGG | - | chr5_1:10944400-10944419 | Msa0717240:intron | 25.0% |
| ! | TGAAATTGAAGGAAGTTAAT+GGG | - | chr5_1:10944401-10944420 | Msa0717240:intron | 25.0% |
| ! | TGTTATCTTGTCTTGATTAA+TGG | + | chr5_1:10944504-10944523 | None:intergenic | 25.0% |
| AAAGATAGAGTTTGTGGTAT+TGG | + | chr5_1:10941134-10941153 | None:intergenic | 30.0% | |
| AAGTTCAAAGATAGAGTTTG+TGG | + | chr5_1:10941140-10941159 | None:intergenic | 30.0% | |
| AATTTGAACAAAGATGAGAG+TGG | + | chr5_1:10941180-10941199 | None:intergenic | 30.0% | |
| TCAAAGTGAGTTCAATAGAA+TGG | - | chr5_1:10941446-10941465 | Msa0717240:intron | 30.0% | |
| ! | ACGATTAGTATATTGAGTTG+AGG | + | chr5_1:10941691-10941710 | None:intergenic | 30.0% |
| AAAGATTGTGAGAGTGAAAA+AGG | + | chr5_1:10941775-10941794 | None:intergenic | 30.0% | |
| AGACATAATAACGAAGGAAA+TGG | + | chr5_1:10942025-10942044 | None:intergenic | 30.0% | |
| TGTTTCATAATTAACTACGG+AGG | - | chr5_1:10942121-10942140 | Msa0717240:three_prime_UTR | 30.0% | |
| TTGTTGTCTGCATATATATC+GGG | - | chr5_1:10942227-10942246 | Msa0717240:intron | 30.0% | |
| ! | ATTACGGAGGAATGTATTTT+TGG | + | chr5_1:10942481-10942500 | None:intergenic | 30.0% |
| ACATATGCGTCAGATAATTA+CGG | + | chr5_1:10942497-10942516 | None:intergenic | 30.0% | |
| !!! | GCTTGTTTTTGTTTTGTGAT+TGG | - | chr5_1:10942616-10942635 | Msa0717240:intron | 30.0% |
| GCACAAAAATTGAAAGAAGT+CGG | + | chr5_1:10942673-10942692 | None:intergenic | 30.0% | |
| CAAACACAAAAATTGCATGA+AGG | + | chr5_1:10942739-10942758 | None:intergenic | 30.0% | |
| !! | ACTTTGTTTATGTGTGGTTT+TGG | + | chr5_1:10942977-10942996 | None:intergenic | 30.0% |
| TTCAGAAAAATGAGGTTTCT+TGG | - | chr5_1:10943053-10943072 | Msa0717240:intron | 30.0% | |
| !! | AAAACATTTGGTGATGCAAT+AGG | + | chr5_1:10943095-10943114 | None:intergenic | 30.0% |
| GAAATCATTCCTAATACTTC+TGG | + | chr5_1:10943186-10943205 | None:intergenic | 30.0% | |
| AAGTATTAGGAATGATTTCG+AGG | - | chr5_1:10943187-10943206 | Msa0717240:intron | 30.0% | |
| ACATTTGATAAGCTTGGTTA+GGG | + | chr5_1:10943336-10943355 | None:intergenic | 30.0% | |
| TTGAACACATTTGATAAGCT+TGG | + | chr5_1:10943342-10943361 | None:intergenic | 30.0% | |
| AACACTTATGACATAAAAGG+TGG | + | chr5_1:10943527-10943546 | None:intergenic | 30.0% | |
| CCAAACACTTATGACATAAA+AGG | + | chr5_1:10943530-10943549 | None:intergenic | 30.0% | |
| ! | CCTTTTATGTCATAAGTGTT+TGG | - | chr5_1:10943527-10943546 | Msa0717240:intron | 30.0% |
| ATTATCACGTTAGACAACAT+GGG | + | chr5_1:10943599-10943618 | None:intergenic | 30.0% | |
| TATTATCACGTTAGACAACA+TGG | + | chr5_1:10943600-10943619 | None:intergenic | 30.0% | |
| AGAAAGTAAAGCAACCAATT+TGG | - | chr5_1:10943797-10943816 | Msa0717240:intron | 30.0% | |
| CATGACATATGTTTCTTCAT+GGG | + | chr5_1:10943914-10943933 | None:intergenic | 30.0% | |
| TTGAAGGGAATAGAAATGTT+TGG | - | chr5_1:10944033-10944052 | Msa0717240:intron | 30.0% | |
| TGAAGGGAATAGAAATGTTT+GGG | - | chr5_1:10944034-10944053 | Msa0717240:intron | 30.0% | |
| TGAACTTCAAAACTAAGTTC+CGG | + | chr5_1:10944160-10944179 | None:intergenic | 30.0% | |
| ! | TTTTCGTTTATGTATCCATG+TGG | + | chr5_1:10944230-10944249 | None:intergenic | 30.0% |
| CTTGCAGTTAAGAAAGAAAA+GGG | + | chr5_1:10944537-10944556 | None:intergenic | 30.0% | |
| ACTTGCAGTTAAGAAAGAAA+AGG | + | chr5_1:10944538-10944557 | None:intergenic | 30.0% | |
| TTCTTAACTGCAAGTAACTT+TGG | - | chr5_1:10944543-10944562 | Msa0717240:CDS | 30.0% | |
| !! | TTTTCCTTTTTGGGCATTTT+AGG | - | chr5_1:10944722-10944741 | Msa0717240:intron | 30.0% |
| TTTCTTTGAATTTCCTTGCT+GGG | + | chr5_1:10944763-10944782 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGAATTTCCTTGC+TGG | + | chr5_1:10944764-10944783 | None:intergenic | 30.0% |
| AGCAAGGAAATTCAAAGAAA+AGG | - | chr5_1:10944763-10944782 | Msa0717240:intron | 30.0% | |
| AATTCAAAGAAAAGGAGAGA+AGG | - | chr5_1:10944771-10944790 | Msa0717240:intron | 30.0% | |
| AGGGATAAACAAAGAATCAA+CGG | + | chr5_1:10944966-10944985 | None:intergenic | 30.0% | |
| TTTGGATAGGAAAAACATGG+AGG | - | chr5_1:10941343-10941362 | Msa0717240:intron | 35.0% | |
| TTGGATAGGAAAAACATGGA+GGG | - | chr5_1:10941344-10941363 | Msa0717240:intron | 35.0% | |
| ! | TGATTGATTCAAGTCGTTCT+TGG | + | chr5_1:10941429-10941448 | None:intergenic | 35.0% |
| TGTGTGATAAGGAAGAGAAA+CGG | + | chr5_1:10941740-10941759 | None:intergenic | 35.0% | |
| ! | TCTGGAACAATTGTGTGATA+AGG | + | chr5_1:10941751-10941770 | None:intergenic | 35.0% |
| AAAAGGGTAAAACATACCTG+TGG | + | chr5_1:10941827-10941846 | None:intergenic | 35.0% | |
| TGATGACTACTGATATGCAT+GGG | + | chr5_1:10941976-10941995 | None:intergenic | 35.0% | |
| ATGATGACTACTGATATGCA+TGG | + | chr5_1:10941977-10941996 | None:intergenic | 35.0% | |
| GAAGGAAGACATAATAACGA+AGG | + | chr5_1:10942031-10942050 | None:intergenic | 35.0% | |
| TCATAATTAACTACGGAGGA+TGG | - | chr5_1:10942125-10942144 | Msa0717240:three_prime_UTR | 35.0% | |
| GAAAGAAGTCGGTAATTGTA+TGG | + | chr5_1:10942662-10942681 | None:intergenic | 35.0% | |
| ! | TGGTAATGATGAGATTAGGA+GGG | + | chr5_1:10942869-10942888 | None:intergenic | 35.0% |
| ! | ATGGTAATGATGAGATTAGG+AGG | + | chr5_1:10942870-10942889 | None:intergenic | 35.0% |
| ! | GCAATGGTAATGATGAGATT+AGG | + | chr5_1:10942873-10942892 | None:intergenic | 35.0% |
| CCTGCAATATACAAATGCAA+TGG | + | chr5_1:10942889-10942908 | None:intergenic | 35.0% | |
| CCATTGCATTTGTATATTGC+AGG | - | chr5_1:10942886-10942905 | Msa0717240:intron | 35.0% | |
| GGCTACTTGTTCAAAAATTC+AGG | - | chr5_1:10943208-10943227 | Msa0717240:intron | 35.0% | |
| AACAGTAAACGTTGAGAAGT+GGG | - | chr5_1:10943300-10943319 | Msa0717240:intron | 35.0% | |
| CACATTTGATAAGCTTGGTT+AGG | + | chr5_1:10943337-10943356 | None:intergenic | 35.0% | |
| CCATGACATATGTTTCTTCA+TGG | + | chr5_1:10943915-10943934 | None:intergenic | 35.0% | |
| CCATGAAGAAACATATGTCA+TGG | - | chr5_1:10943912-10943931 | Msa0717240:intron | 35.0% | |
| ! | GGAAGTGTAGTGTATCAAAT+TGG | - | chr5_1:10943986-10944005 | Msa0717240:intron | 35.0% |
| AAACTAAGTTCCGGGATATA+AGG | + | chr5_1:10944151-10944170 | None:intergenic | 35.0% | |
| GAACTTCAAAACTAAGTTCC+GGG | + | chr5_1:10944159-10944178 | None:intergenic | 35.0% | |
| ! | TTTGAAGTTCATGACTTGCA+AGG | - | chr5_1:10944169-10944188 | Msa0717240:intron | 35.0% |
| TTTATGTATCCATGTGGCAT+TGG | + | chr5_1:10944224-10944243 | None:intergenic | 35.0% | |
| ! | GCTGAATCATTTGAGTTTCT+AGG | - | chr5_1:10944615-10944634 | Msa0717240:intron | 35.0% |
| GAGGCAAAAAACGAACATTT+GGG | + | chr5_1:10944690-10944709 | None:intergenic | 35.0% | |
| TGAGGCAAAAAACGAACATT+TGG | + | chr5_1:10944691-10944710 | None:intergenic | 35.0% | |
| TCAACCTAAAATGCCCAAAA+AGG | + | chr5_1:10944729-10944748 | None:intergenic | 35.0% | |
| TTCTTTGAATTTCCTTGCTG+GGG | + | chr5_1:10944762-10944781 | None:intergenic | 35.0% | |
| AAAGAATCAACGGCATCTTT+GGG | + | chr5_1:10944956-10944975 | None:intergenic | 35.0% | |
| ! | TTTGTGGTATTGGAGGCTAT+TGG | + | chr5_1:10941124-10941143 | None:intergenic | 40.0% |
| ! | GATAGAGTTTGTGGTATTGG+AGG | + | chr5_1:10941131-10941150 | None:intergenic | 40.0% |
| TGGATAGGAAAAACATGGAG+GGG | - | chr5_1:10941345-10941364 | Msa0717240:intron | 40.0% | |
| TACATAGATTGTCAGCCAAG+TGG | - | chr5_1:10941486-10941505 | Msa0717240:intron | 40.0% | |
| TGGGAACAAGATATACCACT+TGG | + | chr5_1:10941504-10941523 | None:intergenic | 40.0% | |
| TCTTGTTCCCATTCAACTTC+AGG | - | chr5_1:10941513-10941532 | Msa0717240:intron | 40.0% | |
| ACAAGGACCTGAAGTTGAAT+GGG | + | chr5_1:10941523-10941542 | None:intergenic | 40.0% | |
| AACAAGGACCTGAAGTTGAA+TGG | + | chr5_1:10941524-10941543 | None:intergenic | 40.0% | |
| AAGAGAAACGGTGAGATTGA+TGG | + | chr5_1:10941728-10941747 | None:intergenic | 40.0% | |
| TGTGAGAGTGAAAAAGGTTC+TGG | + | chr5_1:10941769-10941788 | None:intergenic | 40.0% | |
| GAAGGAAATGGTAAGATCGA+AGG | + | chr5_1:10942013-10942032 | None:intergenic | 40.0% | |
| CCACAACATGGTAAGATTGA+AGG | + | chr5_1:10942049-10942068 | None:intergenic | 40.0% | |
| CCTTCAATCTTACCATGTTG+TGG | - | chr5_1:10942046-10942065 | Msa0717240:three_prime_UTR | 40.0% | |
| TATGCGTCAGATAATTACGG+AGG | + | chr5_1:10942494-10942513 | None:intergenic | 40.0% | |
| ACGATGAACGACACTTTGTA+GGG | - | chr5_1:10942563-10942582 | Msa0717240:intron | 40.0% | |
| GAAGTCGGTAATTGTATGGA+GGG | + | chr5_1:10942658-10942677 | None:intergenic | 40.0% | |
| AGAAGTCGGTAATTGTATGG+AGG | + | chr5_1:10942659-10942678 | None:intergenic | 40.0% | |
| GGTAATGATGAGATTAGGAG+GGG | + | chr5_1:10942868-10942887 | None:intergenic | 40.0% | |
| !! | CCTCATTTTTCTGAATCTCG+AGG | + | chr5_1:10943048-10943067 | None:intergenic | 40.0% |
| CCTCGAGATTCAGAAAAATG+AGG | - | chr5_1:10943045-10943064 | Msa0717240:intron | 40.0% | |
| AGGAAGGAATATGAGGAACA+TGG | - | chr5_1:10943143-10943162 | Msa0717240:intron | 40.0% | |
| TGAGGAACATGGTTCAATTG+AGG | - | chr5_1:10943154-10943173 | Msa0717240:intron | 40.0% | |
| !! | AGGAGGTATCCAGAAGTATT+AGG | - | chr5_1:10943174-10943193 | Msa0717240:intron | 40.0% |
| CAACAGTAAACGTTGAGAAG+TGG | - | chr5_1:10943299-10943318 | Msa0717240:intron | 40.0% | |
| GTAAAGCAACCAATTTGGTC+AGG | - | chr5_1:10943802-10943821 | Msa0717240:intron | 40.0% | |
| AGGTAACAATGATCACCACA+TGG | + | chr5_1:10943838-10943857 | None:intergenic | 40.0% | |
| GAAGCTCTTGTCTAACTCAA+TGG | - | chr5_1:10943948-10943967 | Msa0717240:intron | 40.0% | |
| CTCTTGTCTAACTCAATGGA+AGG | - | chr5_1:10943952-10943971 | Msa0717240:intron | 40.0% | |
| ! | TCAATGGAAGGACAAGTTGA+AGG | - | chr5_1:10943964-10943983 | Msa0717240:intron | 40.0% |
| ! | CAATGGAAGGACAAGTTGAA+GGG | - | chr5_1:10943965-10943984 | Msa0717240:intron | 40.0% |
| TATGCAGTTGCCTTATATCC+CGG | - | chr5_1:10944138-10944157 | Msa0717240:intron | 40.0% | |
| ! | AGGAAGTTAATGGGCAAGTA+AGG | - | chr5_1:10944410-10944429 | Msa0717240:intron | 40.0% |
| ACAACATGCAAATTGAGCTC+AGG | - | chr5_1:10944797-10944816 | Msa0717240:intron | 40.0% | |
| AAGAATCAACGGCATCTTTG+GGG | + | chr5_1:10944955-10944974 | None:intergenic | 40.0% | |
| CAAAGAATCAACGGCATCTT+TGG | + | chr5_1:10944957-10944976 | None:intergenic | 40.0% | |
| GGATAGGAAAAACATGGAGG+GGG | - | chr5_1:10941346-10941365 | Msa0717240:intron | 45.0% | |
| !! | GGTGAGATTGATGGTGGTTA+TGG | + | chr5_1:10941719-10941738 | None:intergenic | 45.0% |
| AGAAACGGTGAGATTGATGG+TGG | + | chr5_1:10941725-10941744 | None:intergenic | 45.0% | |
| CTTCTTCTTCATACCGCTCA+AGG | - | chr5_1:10941795-10941814 | Msa0717240:three_prime_UTR | 45.0% | |
| ! | TCACATTAGAGTCGGTGTCT+CGG | + | chr5_1:10941904-10941923 | None:intergenic | 45.0% |
| GACGATGAACGACACTTTGT+AGG | - | chr5_1:10942562-10942581 | Msa0717240:intron | 45.0% | |
| CGATGAACGACACTTTGTAG+GGG | - | chr5_1:10942564-10942583 | Msa0717240:intron | 45.0% | |
| GGAACATGGTTCAATTGAGG+AGG | - | chr5_1:10943157-10943176 | Msa0717240:intron | 45.0% | |
| AGTAAACGTTGAGAAGTGGG+TGG | - | chr5_1:10943303-10943322 | Msa0717240:intron | 45.0% | |
| TCTCTGTCACCTGACCAAAT+TGG | + | chr5_1:10943814-10943833 | None:intergenic | 45.0% | |
| GTTGAAGTTCCAATGCCACA+TGG | - | chr5_1:10944212-10944231 | Msa0717240:intron | 45.0% | |
| !! | TAATTAATTAACTAATTTAA+TGG | - | chr5_1:10943764-10943783 | Msa0717240:intron | 5.0% |
| CCTGTGGTGAAATCCTTGAG+CGG | + | chr5_1:10941811-10941830 | None:intergenic | 50.0% | |
| GAACGACACTTTGTAGGGGA+AGG | - | chr5_1:10942568-10942587 | Msa0717240:intron | 50.0% | |
| GTCGGTAATTGTATGGAGGG+TGG | + | chr5_1:10942655-10942674 | None:intergenic | 50.0% | |
| TCAGGTGACAGAGAACCATG+TGG | - | chr5_1:10943820-10943839 | Msa0717240:intron | 50.0% | |
| GAACTCATAGAACCCCAGCA+AGG | - | chr5_1:10944747-10944766 | Msa0717240:intron | 50.0% | |
| CCGCTCAAGGATTTCACCAC+AGG | - | chr5_1:10941808-10941827 | Msa0717240:three_prime_UTR | 55.0% | |
| GATTAGGAGGGGTGACGAGT+CGG | + | chr5_1:10942857-10942876 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 10940965 | 10945007 | 10940965 | ID=Msa0717240;Name=Msa0717240 |
| chr5_1 | mRNA | 10940965 | 10945007 | 10940965 | ID=Msa0717240-mRNA-1;Parent=Msa0717240;Name=Msa0717240-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.66|0.71|0.85|0.16|0.14|7|636|69 |
| chr5_1 | exon | 10940965 | 10941070 | 10940965 | ID=Msa0717240-mRNA-1:exon:4506;Parent=Msa0717240-mRNA-1 |
| chr5_1 | exon | 10941154 | 10941228 | 10941154 | ID=Msa0717240-mRNA-1:exon:4505;Parent=Msa0717240-mRNA-1 |
| chr5_1 | exon | 10941716 | 10942164 | 10941716 | ID=Msa0717240-mRNA-1:exon:4504;Parent=Msa0717240-mRNA-1 |
| chr5_1 | exon | 10942266 | 10942316 | 10942266 | ID=Msa0717240-mRNA-1:exon:4503;Parent=Msa0717240-mRNA-1 |
| chr5_1 | exon | 10944522 | 10944620 | 10944522 | ID=Msa0717240-mRNA-1:exon:4502;Parent=Msa0717240-mRNA-1 |
| chr5_1 | exon | 10944810 | 10944871 | 10944810 | ID=Msa0717240-mRNA-1:exon:4501;Parent=Msa0717240-mRNA-1 |
| chr5_1 | exon | 10945004 | 10945007 | 10945004 | ID=Msa0717240-mRNA-1:exon:4500;Parent=Msa0717240-mRNA-1 |
| chr5_1 | CDS | 10945004 | 10945007 | 10945004 | ID=Msa0717240-mRNA-1:cds;Parent=Msa0717240-mRNA-1 |
| chr5_1 | CDS | 10944810 | 10944871 | 10944810 | ID=Msa0717240-mRNA-1:cds;Parent=Msa0717240-mRNA-1 |
| chr5_1 | CDS | 10944522 | 10944620 | 10944522 | ID=Msa0717240-mRNA-1:cds;Parent=Msa0717240-mRNA-1 |
| chr5_1 | CDS | 10942272 | 10942316 | 10942272 | ID=Msa0717240-mRNA-1:cds;Parent=Msa0717240-mRNA-1 |
| chr5_1 | three_prime_UTR | 10942266 | 10942271 | 10942266 | ID=Msa0717240-mRNA-1:three_prime_utr;Parent=Msa0717240-mRNA-1 |
| chr5_1 | three_prime_UTR | 10941716 | 10942164 | 10941716 | ID=Msa0717240-mRNA-1:three_prime_utr;Parent=Msa0717240-mRNA-1 |
| chr5_1 | three_prime_UTR | 10941154 | 10941228 | 10941154 | ID=Msa0717240-mRNA-1:three_prime_utr;Parent=Msa0717240-mRNA-1 |
| chr5_1 | three_prime_UTR | 10940965 | 10941070 | 10940965 | ID=Msa0717240-mRNA-1:three_prime_utr;Parent=Msa0717240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
