AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876030 MtrunA17_Chr6g0457151 95.486 288 6 1 1 281 1 288 0.0 560
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876030 AT5G38660.1 81.863 204 36 1 78 280 81 284 1.37e-122 352
Msa0876030 AT5G38660.2 83.889 180 29 0 78 257 81 260 2.63e-109 323

Find 80 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAAATTTACTTCATTCTT+TGG 0.205674 6_1:-13410114 Msa0876030:CDS
GCATTCAAATAACATCATTT+TGG 0.219546 6_1:+13414980 None:intergenic
TGCTTTATGTTTCAGGGAAA+TGG 0.263031 6_1:-13411673 Msa0876030:intron
GAAATATGCAGGTATGGTTT+TGG 0.269802 6_1:-13413164 Msa0876030:intron
TGCTTGATTTAGTTAATTAC+AGG 0.285326 6_1:-13409749 Msa0876030:three_prime_UTR
CATGGAATGGAAGGATTAAT+TGG 0.289704 6_1:+13409773 None:intergenic
AGGACACGTAATCTCAAATT+TGG 0.311292 6_1:-13415081 Msa0876030:five_prime_UTR
ACAGCTTCTCAGTCTTCTTC+TGG 0.314907 6_1:-13414783 Msa0876030:CDS
CATGGAGAAGATGCAGCATT+AGG 0.332558 6_1:+13409806 None:intergenic
CTAAATTTACTTCATTCTTT+GGG 0.335639 6_1:-13410113 Msa0876030:CDS
AGAATGGGTGCACTTCTTCT+AGG 0.340329 6_1:+13411646 None:intergenic
GCATACTTTAATATTCTTCC+TGG 0.340893 6_1:-13413140 Msa0876030:CDS
TGAATTTATACATATTTCAT+AGG 0.341622 6_1:+13409718 None:intergenic
CAGATTACCTGTTTAAGAAT+AGG 0.345912 6_1:+13412489 None:intergenic
GGTTTCCCTCTTGCTATCAT+TGG 0.351215 6_1:-13413086 Msa0876030:CDS
ACAAGATGGAAAATATTCTT+TGG 0.355807 6_1:-13411225 Msa0876030:CDS
TGGAAAATATTCTTTGGTCT+TGG 0.374306 6_1:-13411219 Msa0876030:CDS
AATAACTTACTAGACCATAT+TGG 0.381211 6_1:+13412044 None:intergenic
CCAACTTCTGCTGTAATTCC+AGG 0.392205 6_1:+13410090 None:intergenic
CTTAGCATGAAAACATGAAA+TGG 0.393570 6_1:+13414869 None:intergenic
TGCAACTCCTATTCTTAAAC+AGG 0.400679 6_1:-13412496 Msa0876030:intron
GAAGAATCAGCAGCTCTTAC+CGG 0.412466 6_1:+13414813 None:intergenic
TTCATCCCCATAGCGAAATC+TGG 0.420679 6_1:+13412099 None:intergenic
CCCTCTTGCTATCATTGGCA+TGG 0.426729 6_1:-13413081 Msa0876030:CDS
ACAAGTGTCCTACTATCAAC+TGG 0.433759 6_1:+13414756 None:intergenic
TTAATTGGTCAAGAACTTCA+TGG 0.439477 6_1:+13409788 None:intergenic
TGGGGATGAACAACATTTAG+AGG 0.441869 6_1:-13412086 Msa0876030:CDS
TTTACTTCATTCTTTGGGCC+TGG 0.441912 6_1:-13410108 Msa0876030:CDS
AAAACGATTTATATGAGGTT+CGG 0.442396 6_1:-13409847 Msa0876030:CDS
ATGGAGAAGATGCAGCATTA+GGG 0.446417 6_1:+13409807 None:intergenic
GGAGACTTTGTGAGTTGAAG+AGG 0.451225 6_1:+13414915 None:intergenic
TCTGCTATAATGTTAACATA+TGG 0.452103 6_1:-13413107 Msa0876030:CDS
CAGATTTCATTCGGTACGAT+TGG 0.454241 6_1:-13413303 Msa0876030:CDS
GTTGAAGAGGAGGAAGATAG+TGG 0.457036 6_1:+13414928 None:intergenic
TTCACGAACCATCTGTAGAA+TGG 0.457796 6_1:+13411630 None:intergenic
ATGTTACCAGATTTCGCTAT+GGG 0.475605 6_1:-13412105 Msa0876030:CDS
CTGGTGTTCCAGTTGATAGT+AGG 0.480802 6_1:-13414764 Msa0876030:CDS
GAGGAGGAAGATAGTGGAAC+CGG 0.482681 6_1:+13414934 None:intergenic
AAATAGAAAAGCAATTGAAA+AGG 0.486550 6_1:-13409646 Msa0876030:three_prime_UTR
TTTAGTTAATTACAGGACTT+AGG 0.487199 6_1:-13409742 Msa0876030:three_prime_UTR
GTGATGGAGATTTCATCATC+AGG 0.487483 6_1:+13414732 None:intergenic
ATATTCTTCCTGGATCTGAA+TGG 0.487635 6_1:-13413130 Msa0876030:CDS
TGCAAAGCCGTGTCCTCCTC+CGG 0.488628 6_1:-13414960 Msa0876030:CDS
GAATGGGTGCACTTCTTCTA+GGG 0.489478 6_1:+13411647 None:intergenic
ATAGCAGACCATTCAGATCC+AGG 0.491016 6_1:+13413122 None:intergenic
TCACGAACCATCTGTAGAAT+GGG 0.491160 6_1:+13411631 None:intergenic
CCGTGTCCTCCTCCGGTCAC+CGG 0.495789 6_1:-13414953 Msa0876030:CDS
TTTGTTTCAGACACAGCAAA+AGG 0.505901 6_1:+13415015 None:intergenic
GGTACGATTGGACTAAGTCT+TGG 0.506156 6_1:-13413291 Msa0876030:CDS
ATCAAGCAACATGGAATGGA+AGG 0.506563 6_1:+13409764 None:intergenic
AAGATAGTGGAACCGGTGAC+CGG 0.507708 6_1:+13414941 None:intergenic
GAATATGTGAGGCAAGGTAC+TGG 0.507805 6_1:+13412546 None:intergenic
GACTTTGTGAGTTGAAGAGG+AGG 0.509455 6_1:+13414918 None:intergenic
CTAAATCAAGCAACATGGAA+TGG 0.511303 6_1:+13409760 None:intergenic
TGAAATATGTATAAATTCAA+AGG 0.524064 6_1:-13409714 Msa0876030:three_prime_UTR
CCGGTGACCGGAGGAGGACA+CGG 0.534166 6_1:+13414953 None:intergenic
GTGGAACCGGTGACCGGAGG+AGG 0.537633 6_1:+13414947 None:intergenic
GGGCGAAAACGATTTATATG+AGG 0.539741 6_1:-13409852 Msa0876030:CDS
TATCATTGGCATGGCACTCA+AGG 0.540554 6_1:-13413072 Msa0876030:intron
CCTGGAATTACAGCAGAAGT+TGG 0.543795 6_1:-13410090 Msa0876030:intron
ACACGTAATCTCAAATTTGG+CGG 0.552221 6_1:-13415078 Msa0876030:five_prime_UTR
AATGTGAAAGATAAAGAATG+AGG 0.557360 6_1:-13415101 None:intergenic
ATTTAGAGGAGGCATTGAAA+CGG 0.563869 6_1:-13412072 Msa0876030:CDS
TGAAAACATGAAATGGATTG+AGG 0.565908 6_1:+13414876 None:intergenic
TCTACAGATGGTTCGTGAAG+AGG 0.578965 6_1:-13411626 Msa0876030:intron
GATGTTACCAGATTTCGCTA+TGG 0.585306 6_1:-13412106 Msa0876030:CDS
TGATGAAATCTCCATCACTA+AGG 0.585694 6_1:-13414727 Msa0876030:intron
GAGGGAGTATACCTTAGTGA+TGG 0.593860 6_1:+13414716 None:intergenic
AAGTGCACCCATTCTACAGA+TGG 0.605114 6_1:-13411638 Msa0876030:CDS
GCATCTGAATATGTGAGGCA+AGG 0.616649 6_1:+13412540 None:intergenic
GTGTGTGATCCACATTGGCT+AGG 0.623107 6_1:+13409618 None:intergenic
AAGGAAGAGCCTAGCCAATG+TGG 0.631463 6_1:-13409627 Msa0876030:three_prime_UTR
TGAGGATGAACAGAAACAAG+TGG 0.632231 6_1:+13414894 None:intergenic
GCCATGCCAATGATAGCAAG+AGG 0.632297 6_1:+13413080 None:intergenic
TGTAAGCATCTGAATATGTG+AGG 0.654235 6_1:+13412535 None:intergenic
ATTAACTAAATCAAGCAACA+TGG 0.657818 6_1:+13409755 None:intergenic
CCATGCCAATGATAGCAAGA+GGG 0.670916 6_1:+13413081 None:intergenic
GGATGAACAACATTTAGAGG+AGG 0.694837 6_1:-13412083 Msa0876030:CDS
TGTTACCAGATTTCGCTATG+GGG 0.695795 6_1:-13412104 Msa0876030:CDS
ATAATGTGTGTGATCCACAT+TGG 0.715705 6_1:+13409613 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAGATAATGAAAA+AGG + chr6_1:13410027-13410046 None:intergenic 10.0%
!!! TTTTTCATTATCTTTTTTTA+AGG - chr6_1:13410026-13410045 Msa0876030:intron 10.0%
!!! TTTTTTTTTTTTTTTTGACA+TGG + chr6_1:13412379-13412398 None:intergenic 10.0%
!! GTTTATTTAATCTTATCTTA+TGG + chr6_1:13411215-13411234 None:intergenic 15.0%
!! CATATTTCAAACAAATAAAA+GGG + chr6_1:13411537-13411556 None:intergenic 15.0%
!!! CAATTTTCTCAAATTATTTA+CGG - chr6_1:13412027-13412046 Msa0876030:intron 15.0%
!!! ATTCTTCATATTGTTTTAAT+TGG - chr6_1:13412113-13412132 Msa0876030:CDS 15.0%
!! CAATTATAAATAATTACGTA+GGG + chr6_1:13413815-13413834 None:intergenic 15.0%
!! TCAATTATAAATAATTACGT+AGG + chr6_1:13413816-13413835 None:intergenic 15.0%
!! TACGTAATTATTTATAATTG+AGG - chr6_1:13413815-13413834 Msa0876030:intron 15.0%
!! TGAATTTATACATATTTCAT+AGG + chr6_1:13414998-13415017 None:intergenic 15.0%
!! TGAAATATGTATAAATTCAA+AGG - chr6_1:13414999-13415018 Msa0876030:five_prime_UTR 15.0%
!! ATAAATTGTTTATCCAAACA+GGG + chr6_1:13410217-13410236 None:intergenic 20.0%
!! AATAAATTGTTTATCCAAAC+AGG + chr6_1:13410218-13410237 None:intergenic 20.0%
!!! CTTATATAAGCTATTTCTAT+AGG - chr6_1:13410286-13410305 Msa0876030:intron 20.0%
!! TGTTTATTGTTAAATGAGTT+TGG - chr6_1:13411078-13411097 Msa0876030:intron 20.0%
!! GTTTATTGTTAAATGAGTTT+GGG - chr6_1:13411079-13411098 Msa0876030:intron 20.0%
!! TAAATATTGAAGTTGCATTT+GGG + chr6_1:13411190-13411209 None:intergenic 20.0%
!! ATAAATATTGAAGTTGCATT+TGG + chr6_1:13411191-13411210 None:intergenic 20.0%
!!! AATTTTATGCATATAAAGCA+AGG + chr6_1:13411335-13411354 None:intergenic 20.0%
!! AAAATTTCATAACTAGTAGT+TGG - chr6_1:13411349-13411368 Msa0876030:intron 20.0%
!! AAATTTCATAACTAGTAGTT+GGG - chr6_1:13411350-13411369 Msa0876030:intron 20.0%
!! GCATATTTCAAACAAATAAA+AGG + chr6_1:13411538-13411557 None:intergenic 20.0%
!!! TTTATTTGTTTGAAATATGC+AGG - chr6_1:13411538-13411557 Msa0876030:intron 20.0%
!! AGATAATTCAATAAAATGAG+AGG + chr6_1:13412705-13412724 None:intergenic 20.0%
!! TTATTGAATTATCTTCCAAA+TGG - chr6_1:13412711-13412730 Msa0876030:intron 20.0%
!!! TAATGAGTTGGATATAAATA+TGG - chr6_1:13413347-13413366 Msa0876030:intron 20.0%
!!! TAATAATATGCCTATGTTTT+AGG - chr6_1:13413461-13413480 Msa0876030:intron 20.0%
!! ACATTCTTATCTAAAAAGTA+TGG + chr6_1:13413699-13413718 None:intergenic 20.0%
!! TAAATATCTTAGTAGTGATT+TGG + chr6_1:13413785-13413804 None:intergenic 20.0%
!! TTACTTAAAGTAAACTAAAC+AGG - chr6_1:13414123-13414142 Msa0876030:intron 20.0%
!! TTATGAAAATAAGCTGAAAA+CGG - chr6_1:13414312-13414331 Msa0876030:intron 20.0%
!! TTTATAATGTGGTTATGAAT+AGG + chr6_1:13414451-13414470 None:intergenic 20.0%
!! CTAAATTTACTTCATTCTTT+GGG - chr6_1:13414600-13414619 Msa0876030:intron 20.0%
!! AAATAGAAAAGCAATTGAAA+AGG - chr6_1:13415067-13415086 Msa0876030:five_prime_UTR 20.0%
!! GCATTCAAATAACATCATTT+TGG + chr6_1:13409736-13409755 None:intergenic 25.0%
!!! TCTTTTTTTAAGGCTATGTT+TGG - chr6_1:13410036-13410055 Msa0876030:intron 25.0%
!! GTTGATAAATTAGCTTATAG+CGG - chr6_1:13410122-13410141 Msa0876030:intron 25.0%
!!! TAAGTTTTGTGAGAATGTTT+TGG + chr6_1:13410445-13410464 None:intergenic 25.0%
! AATTGAGAGAAAAAATGACA+TGG - chr6_1:13410630-13410649 Msa0876030:intron 25.0%
! AGCTTATCAAATAACATTAC+AGG - chr6_1:13410684-13410703 Msa0876030:intron 25.0%
!! GCTTATCAAAAAATGTTTTC+GGG + chr6_1:13410821-13410840 None:intergenic 25.0%
!! GGCTTATCAAAAAATGTTTT+CGG + chr6_1:13410822-13410841 None:intergenic 25.0%
! AAGTTATAAACTACTTGAAG+TGG + chr6_1:13410843-13410862 None:intergenic 25.0%
! TTCAGTACATAGGTAAAATT+GGG + chr6_1:13410886-13410905 None:intergenic 25.0%
! TTATACAAACTTCAGTACAT+AGG + chr6_1:13410896-13410915 None:intergenic 25.0%
! ATAGTGAAGTTTGTATGAAA+AGG - chr6_1:13410945-13410964 Msa0876030:intron 25.0%
!! AAAGTTTTCATGCTTATGAA+TGG - chr6_1:13411305-13411324 Msa0876030:intron 25.0%
!! TCAATTTTGCAGATTTCATT+CGG - chr6_1:13411401-13411420 Msa0876030:intron 25.0%
! TGATTGTATATCAATGAAGA+AGG + chr6_1:13411485-13411504 None:intergenic 25.0%
! AGGGAAAAAAGAAAAACATA+AGG + chr6_1:13411518-13411537 None:intergenic 25.0%
! TCTGCTATAATGTTAACATA+TGG - chr6_1:13411606-13411625 Msa0876030:intron 25.0%
! TTAAAGAGAAGAATCACATA+AGG - chr6_1:13412502-13412521 Msa0876030:CDS 25.0%
! ACTTTAAGTGATTAGAAGAA+AGG + chr6_1:13412557-13412576 None:intergenic 25.0%
! TTTCTTCTAATCACTTAAAG+TGG - chr6_1:13412556-13412575 Msa0876030:CDS 25.0%
! AATAACTTACTAGACCATAT+TGG + chr6_1:13412672-13412691 None:intergenic 25.0%
! TATTATCTGCTTTATGTTTC+AGG - chr6_1:13413033-13413052 Msa0876030:intron 25.0%
! ATTATCTGCTTTATGTTTCA+GGG - chr6_1:13413034-13413053 Msa0876030:intron 25.0%
! AAACATAGGCATATTATTAG+AGG + chr6_1:13413460-13413479 None:intergenic 25.0%
! ACAAGATGGAAAATATTCTT+TGG - chr6_1:13413488-13413507 Msa0876030:intron 25.0%
!! TTTTAGATAAGAATGTTGCA+AGG - chr6_1:13413703-13413722 Msa0876030:intron 25.0%
!!! TTAGTAGTGATTTGGTAATT+TGG + chr6_1:13413777-13413796 None:intergenic 25.0%
! AACTTTCAAGAGATAGAATA+TGG - chr6_1:13413930-13413949 Msa0876030:intron 25.0%
!! TAAGTTTGTTTATCCAAAGA+GGG + chr6_1:13414166-13414185 None:intergenic 25.0%
!! TTAAGTTTGTTTATCCAAAG+AGG + chr6_1:13414167-13414186 None:intergenic 25.0%
! TCAAATAATTCAATCCAAGA+AGG - chr6_1:13414409-13414428 Msa0876030:intron 25.0%
! CATTATGTCTGTTTATAATG+TGG + chr6_1:13414462-13414481 None:intergenic 25.0%
! GAAATATATTAAAACTCCAG+AGG + chr6_1:13414553-13414572 None:intergenic 25.0%
! ATTTCTCAACTTCTTCTATT+TGG - chr6_1:13414568-13414587 Msa0876030:intron 25.0%
! GCTAAATTTACTTCATTCTT+TGG - chr6_1:13414599-13414618 Msa0876030:intron 25.0%
! TGTGTATGAAAATGAATGAA+TGG - chr6_1:13414708-13414727 Msa0876030:intron 25.0%
! AAAACGATTTATATGAGGTT+CGG - chr6_1:13414866-13414885 Msa0876030:CDS 25.0%
! ATTAACTAAATCAAGCAACA+TGG + chr6_1:13414961-13414980 None:intergenic 25.0%
! TGCTTGATTTAGTTAATTAC+AGG - chr6_1:13414964-13414983 Msa0876030:CDS 25.0%
! TTTAGTTAATTACAGGACTT+AGG - chr6_1:13414971-13414990 Msa0876030:CDS 25.0%
!! TGAAAACATGAAATGGATTG+AGG + chr6_1:13409840-13409859 None:intergenic 30.0%
CTTAGCATGAAAACATGAAA+TGG + chr6_1:13409847-13409866 None:intergenic 30.0%
! AGCTTTTCTTCAAAAGCAAT+AGG - chr6_1:13409865-13409884 Msa0876030:intron 30.0%
!!! CAATAGGTTTAGTTTTGTTC+CGG - chr6_1:13409881-13409900 Msa0876030:intron 30.0%
GATAATGAAAAAGGAACTGA+GGG + chr6_1:13410018-13410037 None:intergenic 30.0%
AGATAATGAAAAAGGAACTG+AGG + chr6_1:13410019-13410038 None:intergenic 30.0%
!!! TTTTTTAAGGCTATGTTTGG+TGG - chr6_1:13410039-13410058 Msa0876030:intron 30.0%
! ATAAATTAGCTTATAGCGGA+TGG - chr6_1:13410126-13410145 Msa0876030:intron 30.0%
TTATTTGCAGCTTATATCAC+AGG - chr6_1:13410233-13410252 Msa0876030:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr6_1:13410351-13410370 Msa0876030:intron 30.0%
ATAAGCTCGTAAGAAAACAA+CGG - chr6_1:13410723-13410742 Msa0876030:intron 30.0%
! ATGACTAAAAAAGACTTGCT+TGG + chr6_1:13410752-13410771 None:intergenic 30.0%
CTTCAGTACATAGGTAAAAT+TGG + chr6_1:13410887-13410906 None:intergenic 30.0%
CTCAATGATAAAATACACAC+AGG + chr6_1:13411284-13411303 None:intergenic 30.0%
TTGTATATCAATGAAGAAGG+TGG + chr6_1:13411482-13411501 None:intergenic 30.0%
! TTGTTTGAAATATGCAGGTA+TGG - chr6_1:13411543-13411562 Msa0876030:intron 30.0%
GCATACTTTAATATTCTTCC+TGG - chr6_1:13411573-13411592 Msa0876030:intron 30.0%
ATGTGAATCAAGTTATACGA+TGG - chr6_1:13411682-13411701 Msa0876030:intron 30.0%
CAGATTACCTGTTTAAGAAT+AGG + chr6_1:13412227-13412246 None:intergenic 30.0%
!!! TCTTTTACATTTCTAGCAGT+TGG - chr6_1:13412313-13412332 Msa0876030:intron 30.0%
!! TGTCTTTTGAGAAACATAGA+GGG + chr6_1:13412426-13412445 None:intergenic 30.0%
!! ATGTCTTTTGAGAAACATAG+AGG + chr6_1:13412427-13412446 None:intergenic 30.0%
! ATGTTGTGAAACTCTTTTCT+TGG - chr6_1:13412463-13412482 Msa0876030:intron 30.0%
! TGGCTCTTTTATGCTTTTAT+AGG - chr6_1:13412576-13412595 Msa0876030:intron 30.0%
!! TTGAAACGGATTTTCCAATA+TGG - chr6_1:13412655-13412674 Msa0876030:intron 30.0%
ATTCATCTTAAAGGTCTGAT+TGG + chr6_1:13412781-13412800 None:intergenic 30.0%
!! ATCAGACCTTTAAGATGAAT+TGG - chr6_1:13412781-13412800 Msa0876030:intron 30.0%
CTAGAACCAATTCATCTTAA+AGG + chr6_1:13412790-13412809 None:intergenic 30.0%
AGATCATTTGAAAGAGCTTA+TGG + chr6_1:13412842-13412861 None:intergenic 30.0%
GTCAATCTAAATAGACCTTT+AGG - chr6_1:13412897-13412916 Msa0876030:intron 30.0%
!! TAAATAGACCTTTAGGATGA+AGG - chr6_1:13412904-13412923 Msa0876030:intron 30.0%
GAAGATATCAGAAAGTTGTA+AGG + chr6_1:13412942-13412961 None:intergenic 30.0%
GTCAACATTAGAGATAGATT+TGG - chr6_1:13413144-13413163 Msa0876030:CDS 30.0%
ATATCCAACTCATTAATCTC+TGG + chr6_1:13413342-13413361 None:intergenic 30.0%
TGGTATGAGATAGAACATTA+TGG - chr6_1:13413367-13413386 Msa0876030:intron 30.0%
TGGAAAATATTCTTTGGTCT+TGG - chr6_1:13413494-13413513 Msa0876030:intron 30.0%
! TATAATTTTGTACCATGAGC+CGG + chr6_1:13413876-13413895 None:intergenic 30.0%
TTTCAAGAGATAGAATATGG+TGG - chr6_1:13413933-13413952 Msa0876030:intron 30.0%
TCATGTAAGTGTTTATGCAT+AGG - chr6_1:13414213-13414232 Msa0876030:intron 30.0%
ACATAATGCTTTAACCTTAG+AGG - chr6_1:13414474-13414493 Msa0876030:intron 30.0%
CATAATGCTTTAACCTTAGA+GGG - chr6_1:13414475-13414494 Msa0876030:intron 30.0%
TTAATTGGTCAAGAACTTCA+TGG + chr6_1:13414928-13414947 None:intergenic 30.0%
AGGACACGTAATCTCAAATT+TGG - chr6_1:13409632-13409651 Msa0876030:three_prime_UTR 35.0%
ACACGTAATCTCAAATTTGG+CGG - chr6_1:13409635-13409654 Msa0876030:three_prime_UTR 35.0%
TTTGTTTCAGACACAGCAAA+AGG + chr6_1:13409701-13409720 None:intergenic 35.0%
TGATGAAATCTCCATCACTA+AGG - chr6_1:13409986-13410005 Msa0876030:intron 35.0%
!! TATAGCGGATGGACTTATAA+CGG - chr6_1:13410137-13410156 Msa0876030:intron 35.0%
ATAACTGATTGAACCCTGTT+TGG - chr6_1:13410201-13410220 Msa0876030:intron 35.0%
TTAAATAAGCCAATCCAACC+AGG - chr6_1:13410480-13410499 Msa0876030:intron 35.0%
!! AAAATGTTTTCGGGACTGTT+TGG + chr6_1:13410812-13410831 None:intergenic 35.0%
! ACTCTCGAAATCTAGCTTAA+TGG - chr6_1:13411106-13411125 Msa0876030:intron 35.0%
CACATATTCATTGAGTAGTC+TGG - chr6_1:13411146-13411165 Msa0876030:intron 35.0%
!! GGTATGAGTTATTGATTCTC+AGG - chr6_1:13411371-13411390 Msa0876030:intron 35.0%
! GAAATATGCAGGTATGGTTT+TGG - chr6_1:13411549-13411568 Msa0876030:intron 35.0%
ATATTCTTCCTGGATCTGAA+TGG - chr6_1:13411583-13411602 Msa0876030:intron 35.0%
! TTCTTTGTGGTTCTATGCAT+TGG - chr6_1:13411902-13411921 Msa0876030:intron 35.0%
! CAAATTATTTACGGTGTCGA+CGG - chr6_1:13412036-13412055 Msa0876030:intron 35.0%
TCTGCATACTGCAAAAATGA+CGG + chr6_1:13412140-13412159 None:intergenic 35.0%
TGTAAGCATCTGAATATGTG+AGG + chr6_1:13412181-13412200 None:intergenic 35.0%
TGCAACTCCTATTCTTAAAC+AGG - chr6_1:13412217-13412236 Msa0876030:intron 35.0%
ATGTTACCAGATTTCGCTAT+GGG - chr6_1:13412608-13412627 Msa0876030:intron 35.0%
!! ATTTAGAGGAGGCATTGAAA+CGG - chr6_1:13412641-13412660 Msa0876030:intron 35.0%
!!! TAAGCACTTTTGAGACCATT+TGG + chr6_1:13412729-13412748 None:intergenic 35.0%
ACTTATTAGAGCTTATCTGC+TGG + chr6_1:13412754-13412773 None:intergenic 35.0%
TCTAGATAATGCAGCTAGTA+TGG + chr6_1:13412967-13412986 None:intergenic 35.0%
TGCTTTATGTTTCAGGGAAA+TGG - chr6_1:13413040-13413059 Msa0876030:intron 35.0%
AGCACCTATAGTAGAATAGA+TGG - chr6_1:13413170-13413189 Msa0876030:intron 35.0%
CTGACCATCTATTCTACTAT+AGG + chr6_1:13413177-13413196 None:intergenic 35.0%
TAGAATAGATGGTCAGAACT+AGG - chr6_1:13413181-13413200 Msa0876030:intron 35.0%
AGAACTAGGCTTACATAGTT+TGG - chr6_1:13413195-13413214 Msa0876030:intron 35.0%
AGATCCAGAGATTAATGAGT+TGG - chr6_1:13413335-13413354 Msa0876030:intron 35.0%
ATATAGATGACCCAACTTAG+TGG - chr6_1:13413403-13413422 Msa0876030:intron 35.0%
TATAGATGACCCAACTTAGT+GGG - chr6_1:13413404-13413423 Msa0876030:intron 35.0%
! AAGTCTTATCCCACTAAGTT+GGG + chr6_1:13413416-13413435 None:intergenic 35.0%
TCTTGTGTGACCTAAAACAT+AGG + chr6_1:13413474-13413493 None:intergenic 35.0%
!! ATGTTTTAGGTCACACAAGA+TGG - chr6_1:13413474-13413493 Msa0876030:intron 35.0%
GTCTCATTATACTCATGAAG+AGG + chr6_1:13413630-13413649 None:intergenic 35.0%
! TGTAGCTTTTGCCAAAACTA+TGG - chr6_1:13413982-13414001 Msa0876030:intron 35.0%
!!! CAGACTCTTGTTTTGTTTGA+CGG + chr6_1:13414035-13414054 None:intergenic 35.0%
ATCCAAAGAGGGTTTAAAGA+GGG + chr6_1:13414155-13414174 None:intergenic 35.0%
TATCCAAAGAGGGTTTAAAG+AGG + chr6_1:13414156-13414175 None:intergenic 35.0%
! GAATAGGATTAGCACTACTA+AGG + chr6_1:13414435-13414454 None:intergenic 35.0%
TCTGTAAATGTAAGATCCTC+TGG - chr6_1:13414534-13414553 Msa0876030:intron 35.0%
!! CTTCTTCTATTTGGTGTTAC+AGG - chr6_1:13414577-13414596 Msa0876030:intron 35.0%
CATGGAATGGAAGGATTAAT+TGG + chr6_1:13414943-13414962 None:intergenic 35.0%
CTAAATCAAGCAACATGGAA+TGG + chr6_1:13414956-13414975 None:intergenic 35.0%
TGAGGATGAACAGAAACAAG+TGG + chr6_1:13409822-13409841 None:intergenic 40.0%
ACAAGTGTCCTACTATCAAC+TGG + chr6_1:13409960-13409979 None:intergenic 40.0%
! GTGATGGAGATTTCATCATC+AGG + chr6_1:13409984-13410003 None:intergenic 40.0%
ATCCAGAACTTACACAATGC+CGG - chr6_1:13410996-13411015 Msa0876030:intron 40.0%
AACTTACACAATGCCGGAAT+AGG - chr6_1:13411002-13411021 Msa0876030:intron 40.0%
TGATGTGTCCATACCTATTC+CGG + chr6_1:13411018-13411037 None:intergenic 40.0%
TTTGTGAGAGCTTGTGAAGA+TGG + chr6_1:13411045-13411064 None:intergenic 40.0%
CAGATTTCATTCGGTACGAT+TGG - chr6_1:13411410-13411429 Msa0876030:intron 40.0%
GGATCGACACTTCAAATTGA+AGG + chr6_1:13411866-13411885 None:intergenic 40.0%
!!! GTGGTTCTATGCATTGGTTT+TGG - chr6_1:13411908-13411927 Msa0876030:intron 40.0%
!!! GTTTTGGCTGATACTCTTCT+GGG - chr6_1:13411924-13411943 Msa0876030:intron 40.0%
TGCTACAGATAAAGAGTCCA+TGG + chr6_1:13411950-13411969 None:intergenic 40.0%
! TCTGAAGCACTACACAGATA+CGG + chr6_1:13412083-13412102 None:intergenic 40.0%
GATGTTACCAGATTTCGCTA+TGG - chr6_1:13412607-13412626 Msa0876030:intron 40.0%
TGTTACCAGATTTCGCTATG+GGG - chr6_1:13412609-13412628 Msa0876030:intron 40.0%
TGGGGATGAACAACATTTAG+AGG - chr6_1:13412627-13412646 Msa0876030:intron 40.0%
GGATGAACAACATTTAGAGG+AGG - chr6_1:13412630-13412649 Msa0876030:intron 40.0%
! CTTTTGCTCCTTCATCCTAA+AGG + chr6_1:13412915-13412934 None:intergenic 40.0%
! ATTGCAACAAGAGCACATAG+AGG + chr6_1:13413001-13413020 None:intergenic 40.0%
TCACGAACCATCTGTAGAAT+GGG + chr6_1:13413085-13413104 None:intergenic 40.0%
TTCACGAACCATCTGTAGAA+TGG + chr6_1:13413086-13413105 None:intergenic 40.0%
AGAAGAGTAGATCAGATGCA+AGG - chr6_1:13413252-13413271 Msa0876030:intron 40.0%
CAAGGTAGTCAAATCACTTG+AGG - chr6_1:13413270-13413289 Msa0876030:intron 40.0%
! GAAGTCTTATCCCACTAAGT+TGG + chr6_1:13413417-13413436 None:intergenic 40.0%
!!! TTCTTTGGTCTTGGTTTTCG+AGG - chr6_1:13413503-13413522 Msa0876030:intron 40.0%
! GTCAGATTTTGAACAGAGAC+AGG - chr6_1:13413542-13413561 Msa0876030:intron 40.0%
CAAGGATACGAATTGTCGAT+TGG - chr6_1:13413721-13413740 Msa0876030:intron 40.0%
!! ATTTGGTGCTTTGATCAGAG+TGG + chr6_1:13413760-13413779 None:intergenic 40.0%
ACCAAGCAGACGTATAAAAC+CGG - chr6_1:13413854-13413873 Msa0876030:intron 40.0%
! CGTGATTTTGTGAAACTCCA+AGG - chr6_1:13413959-13413978 Msa0876030:intron 40.0%
! TTTTGGCAAAAGCTACACCT+TGG + chr6_1:13413979-13413998 None:intergenic 40.0%
!!! GTTTTGTTTGACGGTTGGAT+TGG + chr6_1:13414026-13414045 None:intergenic 40.0%
!!! CTCTTGTTTTGTTTGACGGT+TGG + chr6_1:13414031-13414050 None:intergenic 40.0%
ACGAAAAAAGTTCTTCCTCC+AGG + chr6_1:13414092-13414111 None:intergenic 40.0%
AACCCTCTTTAAACCCTCTT+TGG - chr6_1:13414150-13414169 Msa0876030:intron 40.0%
TTTACTTCATTCTTTGGGCC+TGG - chr6_1:13414605-13414624 Msa0876030:intron 40.0%
GGGCGAAAACGATTTATATG+AGG - chr6_1:13414861-13414880 Msa0876030:CDS 40.0%
ATGGAGAAGATGCAGCATTA+GGG + chr6_1:13414909-13414928 None:intergenic 40.0%
ATCAAGCAACATGGAATGGA+AGG + chr6_1:13414952-13414971 None:intergenic 40.0%
GTTGAAGAGGAGGAAGATAG+TGG + chr6_1:13409788-13409807 None:intergenic 45.0%
! GACTTTGTGAGTTGAAGAGG+AGG + chr6_1:13409798-13409817 None:intergenic 45.0%
! GGAGACTTTGTGAGTTGAAG+AGG + chr6_1:13409801-13409820 None:intergenic 45.0%
GAAGAATCAGCAGCTCTTAC+CGG + chr6_1:13409903-13409922 None:intergenic 45.0%
ACAGCTTCTCAGTCTTCTTC+TGG - chr6_1:13409930-13409949 Msa0876030:intron 45.0%
!! CTGGTGTTCCAGTTGATAGT+AGG - chr6_1:13409949-13409968 Msa0876030:intron 45.0%
! GAGGGAGTATACCTTAGTGA+TGG + chr6_1:13410000-13410019 None:intergenic 45.0%
CTTACCAAACACTACAAGCC+TGG + chr6_1:13410501-13410520 None:intergenic 45.0%
TTCCGGCATTGTGTAAGTTC+TGG + chr6_1:13411001-13411020 None:intergenic 45.0%
ACACAATGCCGGAATAGGTA+TGG - chr6_1:13411007-13411026 Msa0876030:intron 45.0%
GGTACGATTGGACTAAGTCT+TGG - chr6_1:13411422-13411441 Msa0876030:intron 45.0%
ATAGCAGACCATTCAGATCC+AGG + chr6_1:13411594-13411613 None:intergenic 45.0%
! GGTTTCCCTCTTGCTATCAT+TGG - chr6_1:13411627-13411646 Msa0876030:CDS 45.0%
CCATGCCAATGATAGCAAGA+GGG + chr6_1:13411635-13411654 None:intergenic 45.0%
TATCATTGGCATGGCACTCA+AGG - chr6_1:13411641-13411660 Msa0876030:CDS 45.0%
AAGAAACCGCACGAACAAGT+AGG + chr6_1:13411887-13411906 None:intergenic 45.0%
TTGTTCGTGCGGTTTCTTTG+TGG - chr6_1:13411889-13411908 Msa0876030:intron 45.0%
!!! GGTTTTGGCTGATACTCTTC+TGG - chr6_1:13411923-13411942 Msa0876030:intron 45.0%
CATTTGTCTGTGTCGTGTGT+TGG + chr6_1:13411988-13412007 None:intergenic 45.0%
GAATATGTGAGGCAAGGTAC+TGG + chr6_1:13412170-13412189 None:intergenic 45.0%
GCATCTGAATATGTGAGGCA+AGG + chr6_1:13412176-13412195 None:intergenic 45.0%
TTCATCCCCATAGCGAAATC+TGG + chr6_1:13412617-13412636 None:intergenic 45.0%
GCTGCATTATCTAGACACTG+AGG - chr6_1:13412972-13412991 Msa0876030:intron 45.0%
GAATGGGTGCACTTCTTCTA+GGG + chr6_1:13413069-13413088 None:intergenic 45.0%
AGAATGGGTGCACTTCTTCT+AGG + chr6_1:13413070-13413089 None:intergenic 45.0%
AAGTGCACCCATTCTACAGA+TGG - chr6_1:13413075-13413094 Msa0876030:CDS 45.0%
TCTACAGATGGTTCGTGAAG+AGG - chr6_1:13413087-13413106 Msa0876030:CDS 45.0%
! AGACGTATAAAACCGGCTCA+TGG - chr6_1:13413861-13413880 Msa0876030:intron 45.0%
!!! GCTCCAAGTGTACTTTTTCC+TGG - chr6_1:13414071-13414090 Msa0876030:intron 45.0%
! CCTCCAGGAAAAAGTACACT+TGG + chr6_1:13414077-13414096 None:intergenic 45.0%
!!! CCAAGTGTACTTTTTCCTGG+AGG - chr6_1:13414074-13414093 Msa0876030:intron 45.0%
TAGCACTACTAAGGCCTTCT+TGG + chr6_1:13414426-13414445 None:intergenic 45.0%
! ATTCTAGAAGCAGCCCTCTA+AGG + chr6_1:13414491-13414510 None:intergenic 45.0%
CCAACTTCTGCTGTAATTCC+AGG + chr6_1:13414626-13414645 None:intergenic 45.0%
CCTGGAATTACAGCAGAAGT+TGG - chr6_1:13414623-13414642 Msa0876030:intron 45.0%
CATGGAGAAGATGCAGCATT+AGG + chr6_1:13414910-13414929 None:intergenic 45.0%
!! AAGATAGTGGAACCGGTGAC+CGG + chr6_1:13409775-13409794 None:intergenic 50.0%
!! GAGGAGGAAGATAGTGGAAC+CGG + chr6_1:13409782-13409801 None:intergenic 50.0%
CACTACAAGCCTGGTTGGAT+TGG + chr6_1:13410492-13410511 None:intergenic 50.0%
CCAAACACTACAAGCCTGGT+TGG + chr6_1:13410497-13410516 None:intergenic 50.0%
CCAACCAGGCTTGTAGTGTT+TGG - chr6_1:13410494-13410513 Msa0876030:intron 50.0%
! CCCTCTTGCTATCATTGGCA+TGG - chr6_1:13411632-13411651 Msa0876030:CDS 50.0%
GCCATGCCAATGATAGCAAG+AGG + chr6_1:13411636-13411655 None:intergenic 50.0%
TGTCTGTGCCATACGAGTGT+CGG - chr6_1:13411810-13411829 Msa0876030:intron 50.0%
ACCGACACGATTCGTACACT+CGG - chr6_1:13411835-13411854 Msa0876030:intron 50.0%
TCCGAGTGTACGAATCGTGT+CGG + chr6_1:13411839-13411858 None:intergenic 50.0%
GTCGATCCTACTTGTTCGTG+CGG - chr6_1:13411878-13411897 Msa0876030:intron 50.0%
!! GGTCTTGGTTTTCGAGGCTA+AGG - chr6_1:13413509-13413528 Msa0876030:intron 50.0%
!! GCCGGTTTTATACGTCTGCT+TGG + chr6_1:13413858-13413877 None:intergenic 50.0%
! ACGGCGAGTCACCATAGTTT+TGG + chr6_1:13413996-13414015 None:intergenic 50.0%
!! CGGTTGGATTGGCACAATCA+CGG + chr6_1:13414015-13414034 None:intergenic 50.0%
AAGGAAGAGCCTAGCCAATG+TGG - chr6_1:13415086-13415105 Msa0876030:five_prime_UTR 50.0%
GCTGATACTCTTCTGGGCCA+TGG - chr6_1:13411930-13411949 Msa0876030:intron 55.0%
TGCAAAGCCGTGTCCTCCTC+CGG - chr6_1:13409753-13409772 Msa0876030:three_prime_UTR 60.0%
! ATAGTGGAACCGGTGACCGG+AGG + chr6_1:13409772-13409791 None:intergenic 60.0%
GTCGGTCTCCGACACTCGTA+TGG + chr6_1:13411821-13411840 None:intergenic 60.0%
! GTGTCGACGGTGTCAGTGTC+AGG - chr6_1:13412049-13412068 Msa0876030:intron 60.0%
CCGGTGACCGGAGGAGGACA+CGG + chr6_1:13409763-13409782 None:intergenic 70.0%
CCGTGTCCTCCTCCGGTCAC+CGG - chr6_1:13409760-13409779 Msa0876030:three_prime_UTR 70.0%
GTGGAACCGGTGACCGGAGG+AGG + chr6_1:13409769-13409788 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 13409621 13415114 13409621 ID=Msa0876030;Name=Msa0876030
chr6_1 mRNA 13409621 13415114 13409621 ID=Msa0876030-mRNA-1;Parent=Msa0876030;Name=Msa0876030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117|1|1|1|1|1|9|184|281
chr6_1 exon 13409621 13409878 13409621 ID=Msa0876030-mRNA-1:exon:3947;Parent=Msa0876030-mRNA-1
chr6_1 exon 13410091 13410136 13410091 ID=Msa0876030-mRNA-1:exon:3946;Parent=Msa0876030-mRNA-1
chr6_1 exon 13411172 13411252 13411172 ID=Msa0876030-mRNA-1:exon:3945;Parent=Msa0876030-mRNA-1
chr6_1 exon 13411627 13411680 13411627 ID=Msa0876030-mRNA-1:exon:3944;Parent=Msa0876030-mRNA-1
chr6_1 exon 13412054 13412137 13412054 ID=Msa0876030-mRNA-1:exon:3943;Parent=Msa0876030-mRNA-1
chr6_1 exon 13412497 13412583 13412497 ID=Msa0876030-mRNA-1:exon:3942;Parent=Msa0876030-mRNA-1
chr6_1 exon 13413073 13413175 13413073 ID=Msa0876030-mRNA-1:exon:3941;Parent=Msa0876030-mRNA-1
chr6_1 exon 13413276 13413322 13413276 ID=Msa0876030-mRNA-1:exon:3940;Parent=Msa0876030-mRNA-1
chr6_1 exon 13414728 13415114 13414728 ID=Msa0876030-mRNA-1:exon:3939;Parent=Msa0876030-mRNA-1
chr6_1 five_prime_UTR 13414998 13415114 13414998 ID=Msa0876030-mRNA-1:five_prime_utr;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13414728 13414997 13414728 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13413276 13413322 13413276 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13413073 13413175 13413073 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13412497 13412583 13412497 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13412054 13412137 13412054 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13411627 13411680 13411627 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13411172 13411252 13411172 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13410091 13410136 13410091 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 CDS 13409805 13409878 13409805 ID=Msa0876030-mRNA-1:cds;Parent=Msa0876030-mRNA-1
chr6_1 three_prime_UTR 13409621 13409804 13409621 ID=Msa0876030-mRNA-1:three_prime_utr;Parent=Msa0876030-mRNA-1
Gene Sequence

>Msa0876030

ATGATGTTATTTGAATGCAAAGCCGTGTCCTCCTCCGGTCACCGGTTCCACTATCTTCCTCCTCTTCAACTCACAAAGTCTCCACTTGTTTCTGTTCATCCTCAATCCATTTCATGTTTTCATGCTAAGCTTTTCTTCAAAAGCAATAGGTTTAGTTTTGTTCCGGTAAGAGCTGCTGATTCTTCAACTACTACAGCTTCTCAGTCTTCTTCTGGTGTTCCAGTTGATAGTAGGACACTTGTTCCTGATGATGAAATCTCCATCACTAAGATTTCATTCGGTACGATTGGACTAAGTCTTGGAGTCTCACTCTTGTCGTATGGTTTTGGAGCATACTTTAATATTCTTCCTGGATCTGAATGGTCTGCTATAATGTTAACATATGGTTTCCCTCTTGCTATCATTGGCATGGCACTCAAGTATGCAGAACTCAAGCCAGTACCTTGCCTCACATATTCAGATGCTTACAAATTGCAAGAAAAATGTGCAACTCCTATTCTTAAACAGGTGAAGAGTGATGTTACCAGATTTCGCTATGGGGATGAACAACATTTAGAGGAGGCATTGAAACGGATTTTCCAATATGGTCTAGGAAATGGAATCCCTAGAAGAAGTGCACCCATTCTACAGATGGTTCGTGAAGAGGTCACACAAGATGGAAAATATTCTTTGGTCTTGGTTTTCGAGGCTAAGGCTCTAAAGTTGTCAGATTTTGAACAGAGACAGGCTAAATTTACTTCATTCTTTGGGCCTGGAATTACAGCAGAAGTTGGTAAGGGCGAAAACGATTTATATGAGGTTCGGCTTATCTCAAATACAGACCCTAATGCTGCATCTTCTCCATGA

Protein sequence

>Msa0876030

MMLFECKAVSSSGHRFHYLPPLQLTKSPLVSVHPQSISCFHAKLFFKSNRFSFVPVRAADSSTTTASQSSSGVPVDSRTLVPDDEISITKISFGTIGLSLGVSLLSYGFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAYKLQEKCATPILKQVKSDVTRFRYGDEQHLEEALKRIFQYGLGNGIPRRSAPILQMVREEVTQDGKYSLVLVFEAKALKLSDFEQRQAKFTSFFGPGITAEVGKGENDLYEVRLISNTDPNAASSP*