AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504360 MtrunA17_Chr3g0104361 92.683 82 0 1 118 193 435 516 3.41e-43 150
Msa0504360 MtrunA17_Chr7g0247871 78.049 82 12 1 118 193 453 534 2.03e-37 135
Msa0504360 MtrunA17_Chr8g0348761 79.268 82 11 1 118 193 507 588 3.25e-37 135
Msa0504360 MtrunA17_Chr3g0104461 67.778 90 21 1 20 101 157 246 1.01e-32 118
Msa0504360 MtrunA17_Chr2g0290941 66.129 62 21 0 102 163 72 133 4.25e-22 87.8
Msa0504360 MtrunA17_Chr7g0241591 43.182 88 43 1 112 192 419 506 4.84e-17 78.2
Msa0504360 MtrunA17_Chr4g0013731 39.175 97 42 1 114 193 347 443 2.29e-14 70.5
Msa0504360 MtrunA17_Chr4g0064801 40.698 86 43 2 112 189 439 524 6.14e-14 69.3
Msa0504360 MtrunA17_Chr5g0429461 37.209 86 47 1 113 191 505 590 1.32e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504360 AT2G29650.4 87.805 82 4 1 118 193 309 390 1.91e-42 146
Msa0504360 AT2G29650.3 87.805 82 4 1 118 193 319 400 1.99e-42 147
Msa0504360 AT2G29650.1 87.805 82 4 1 118 193 431 512 9.16e-42 147
Msa0504360 AT4G00370.1 79.268 82 11 1 118 193 460 541 5.31e-38 137
Msa0504360 AT5G20380.2 41.111 90 45 2 108 189 471 560 9.63e-16 75.1
Msa0504360 AT5G20380.1 41.111 90 45 2 108 189 419 508 1.03e-15 75.1
Msa0504360 AT5G44370.1 41.237 97 40 1 114 193 336 432 3.42e-15 73.2
Msa0504360 AT2G38060.1 39.773 88 46 1 112 192 425 512 1.30e-14 71.6
Msa0504360 AT3G46980.4 37.209 86 47 1 113 191 490 575 1.27e-11 63.2
Msa0504360 AT3G46980.1 37.209 86 47 1 113 191 442 527 1.55e-11 62.8
Msa0504360 AT3G46980.3 37.209 86 47 1 113 191 442 527 1.56e-11 62.8
Msa0504360 AT3G46980.6 34.737 95 55 1 104 191 189 283 2.03e-11 62.0
Msa0504360 AT3G46980.8 34.737 95 55 1 104 191 253 347 2.55e-11 62.0
Msa0504360 AT3G46980.2 34.737 95 55 1 104 191 253 347 2.55e-11 62.0
Msa0504360 AT3G46980.5 34.737 95 55 1 104 191 253 347 2.58e-11 62.0
Msa0504360 AT3G46980.7 34.737 95 55 1 104 191 253 347 2.58e-11 62.0

Find 54 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCAGACCCTTCTTGATTC+TGG 0.143863 3_4:+48647252 None:intergenic
TATGAATTTCCCACCAAATA+TGG 0.180418 3_4:+48645233 None:intergenic
TCCTTCTTCCAAGGCCAAAA+AGG 0.279760 3_4:+48645305 None:intergenic
CCTTCTTGATTCTGGTTGAT+AGG 0.304949 3_4:+48647260 None:intergenic
ACAAGGTTCACTGCAGAAAT+TGG 0.326206 3_4:+48647194 None:intergenic
AAGAAAGAAAGACTTGTTGA+TGG 0.358384 3_4:-48647287 Msa0504360:CDS
CGTGACAAAGTATCAATTAT+CGG 0.358703 3_4:+48645489 None:intergenic
AATCCACTTACAGAATATCT+AGG 0.360361 3_4:+48646096 None:intergenic
GAACATGAAAATATACAATA+AGG 0.360434 3_4:+48645262 None:intergenic
GGTTTCAGTTGGGCTATATT+TGG 0.362452 3_4:-48645575 Msa0504360:CDS
ACATAAGATGGTACAGCGTT+AGG 0.377559 3_4:+48647155 None:intergenic
ATCTAGGGGCTATATCTTGA+TGG 0.391646 3_4:+48646112 None:intergenic
TGGATAGAGCATTTCATTGA+TGG 0.401318 3_4:-48645344 Msa0504360:three_prime_UTR
CTTATAATAGGGGAGGACTA+AGG 0.410572 3_4:-48647384 Msa0504360:intron
TGTCACAAAATTGATGTGTT+TGG 0.419451 3_4:+48645163 None:intergenic
AGCTAGCACTCCAGCAGTAT+TGG 0.431527 3_4:+48645935 None:intergenic
AAGATTATTGGATTTAAAGA+TGG 0.432842 3_4:-48647025 Msa0504360:intron
GTCCTTGGAACAGCAGCAAC+AGG 0.445368 3_4:-48645909 Msa0504360:intron
ATGAATTTCCCACCAAATAT+GGG 0.454669 3_4:+48645234 None:intergenic
GGAGTGCTAGCTGGTGTCCT+TGG 0.456716 3_4:-48645924 Msa0504360:CDS
TTTGGCCTTGGAAGAAGGAT+TGG 0.456756 3_4:-48645301 Msa0504360:three_prime_UTR
CATAAGATGGTACAGCGTTA+GGG 0.473575 3_4:+48647156 None:intergenic
ATCCACTTACAGAATATCTA+GGG 0.477960 3_4:+48646097 None:intergenic
GGTCAGCAGTTGTTGGTACA+AGG 0.478125 3_4:+48647177 None:intergenic
CTCGGTCTATCCAATACTGC+TGG 0.479482 3_4:-48645945 Msa0504360:CDS
TACACAAGAGCTACCAATGC+AGG 0.480946 3_4:-48647505 Msa0504360:CDS
GCTATTGAACTTCCCTGCAT+TGG 0.497090 3_4:+48647492 None:intergenic
TTATAATAGGGGAGGACTAA+GGG 0.507991 3_4:-48647383 Msa0504360:intron
GTCTGCCGATGGCGATATGA+TGG 0.508424 3_4:-48647237 Msa0504360:CDS
ACTGACGCATTCTCTCAGTC+TGG 0.509935 3_4:-48646147 Msa0504360:CDS
GGATAGAGCATTTCATTGAT+GGG 0.522977 3_4:-48645343 Msa0504360:three_prime_UTR
ATGCAGGGAAGTTCAATAGC+TGG 0.527569 3_4:-48647489 Msa0504360:CDS
GGACAAAATGGTAAATATTG+TGG 0.529115 3_4:-48645364 Msa0504360:three_prime_UTR
AATACTGCTGGAGTGCTAGC+TGG 0.544126 3_4:-48645933 Msa0504360:CDS
CAATAGCTGGATCTGAAAAG+AGG 0.544810 3_4:-48647476 Msa0504360:CDS
GCGTTAGGGTCAGCAGTTGT+TGG 0.544848 3_4:+48647170 None:intergenic
TCAGTTGGGCTATATTTGGT+CGG 0.544903 3_4:-48645571 Msa0504360:CDS
CCTATCAACCAGAATCAAGA+AGG 0.552725 3_4:-48647260 Msa0504360:CDS
ATATGAAGACTCACATAAGA+TGG 0.557045 3_4:+48647143 None:intergenic
TCTTCTCAGGGGATATTGCT+CGG 0.566814 3_4:-48645963 Msa0504360:intron
CTCGAGTACTTTCTCACAGA+AGG 0.567111 3_4:-48645448 Msa0504360:three_prime_UTR
CTAATCCAATCCTTCTTCCA+AGG 0.576037 3_4:+48645296 None:intergenic
TTTCGCCATCATATCGCCAT+CGG 0.584662 3_4:+48647232 None:intergenic
AGGACTACAAGAGAAGAAAA+CGG 0.585903 3_4:-48645425 Msa0504360:three_prime_UTR
AATAGCTGGATCTGAAAAGA+GGG 0.586459 3_4:-48647475 Msa0504360:intron
GCTATATTTGGTCGGAACCG+TGG 0.608376 3_4:-48645563 Msa0504360:CDS
AACCTGTTGCTGCTGTTCCA+AGG 0.609936 3_4:+48645907 None:intergenic
AATCAAGAAGGGTCTGCCGA+TGG 0.618763 3_4:-48647248 Msa0504360:CDS
ATTTGGTCGGAACCGTGGTG+TGG 0.624024 3_4:-48645558 Msa0504360:CDS
ACACAAGAGCTACCAATGCA+GGG 0.638392 3_4:-48647504 Msa0504360:CDS
CTATCAACCAGAATCAAGAA+GGG 0.667428 3_4:-48647259 Msa0504360:CDS
GAGTACTTTCTCACAGAAGG+AGG 0.667959 3_4:-48645445 Msa0504360:three_prime_UTR
TCCACTTACAGAATATCTAG+GGG 0.679967 3_4:+48646098 None:intergenic
CGAGAAAAGGTTCCACACCA+CGG 0.697691 3_4:+48645546 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTATATCTCTTTA+TGG - chr3_4:48646863-48646882 Msa0504360:intron 10.0%
!!! AATTTTATTATATCTCTTTA+TGG - chr3_4:48646863-48646882 Msa0504360:intron 10.0%
!! TTAATGTGTTTCTTATAATA+GGG - chr3_4:48645249-48645268 Msa0504360:three_prime_UTR 15.0%
!! AATTCTTAGTTACTTAATAA+TGG - chr3_4:48645538-48645557 Msa0504360:CDS 15.0%
!! TTATTCTTACTAAATGTTAA+TGG - chr3_4:48646796-48646815 Msa0504360:intron 15.0%
!! TTAATGTGTTTCTTATAATA+GGG - chr3_4:48645249-48645268 Msa0504360:three_prime_UTR 15.0%
!! AATTCTTAGTTACTTAATAA+TGG - chr3_4:48645538-48645557 Msa0504360:CDS 15.0%
!! TTATTCTTACTAAATGTTAA+TGG - chr3_4:48646796-48646815 Msa0504360:intron 15.0%
!! GTTAATGTGTTTCTTATAAT+AGG - chr3_4:48645248-48645267 Msa0504360:three_prime_UTR 20.0%
!! TAATGTGTTTCTTATAATAG+GGG - chr3_4:48645250-48645269 Msa0504360:three_prime_UTR 20.0%
!!! CCTTTTATTTTTCTCTTTTT+TGG + chr3_4:48645318-48645337 None:intergenic 20.0%
!! CCAAAAAAGAGAAAAATAAA+AGG - chr3_4:48645315-48645334 Msa0504360:three_prime_UTR 20.0%
!! AAGATTATTGGATTTAAAGA+TGG - chr3_4:48645619-48645638 Msa0504360:intron 20.0%
!! AAACTTAAAATATTACGTGA+AGG - chr3_4:48646833-48646852 Msa0504360:intron 20.0%
!! GAACATGAAAATATACAATA+AGG + chr3_4:48647385-48647404 None:intergenic 20.0%
!! GTTAATGTGTTTCTTATAAT+AGG - chr3_4:48645248-48645267 Msa0504360:three_prime_UTR 20.0%
!! TAATGTGTTTCTTATAATAG+GGG - chr3_4:48645250-48645269 Msa0504360:three_prime_UTR 20.0%
!!! CCTTTTATTTTTCTCTTTTT+TGG + chr3_4:48645318-48645337 None:intergenic 20.0%
!! CCAAAAAAGAGAAAAATAAA+AGG - chr3_4:48645315-48645334 Msa0504360:three_prime_UTR 20.0%
!! AAGATTATTGGATTTAAAGA+TGG - chr3_4:48645619-48645638 Msa0504360:intron 20.0%
!! AAACTTAAAATATTACGTGA+AGG - chr3_4:48646833-48646852 Msa0504360:intron 20.0%
!! GAACATGAAAATATACAATA+AGG + chr3_4:48647385-48647404 None:intergenic 20.0%
!!! TTTCTCTTTTTTGGTTCATT+TGG + chr3_4:48645309-48645328 None:intergenic 25.0%
! AATTTATGTAACACCTTTCT+TGG - chr3_4:48645561-48645580 Msa0504360:CDS 25.0%
! GAAAAAAGTGACAAGATTAT+TGG - chr3_4:48645607-48645626 Msa0504360:intron 25.0%
! TATTGGATTTAAAGATGGTT+AGG - chr3_4:48645624-48645643 Msa0504360:intron 25.0%
!!! ACCATCATATACTTTTTTGA+AGG + chr3_4:48645678-48645697 None:intergenic 25.0%
! TCATCATCATTAATCACAAT+TGG + chr3_4:48645722-48645741 None:intergenic 25.0%
! ACTTTCTCCAGAAATATTTA+AGG + chr3_4:48646039-48646058 None:intergenic 25.0%
!! GCTTAACATCATCTAAAATT+AGG - chr3_4:48646401-48646420 Msa0504360:intron 25.0%
! AGGAAAAATTTAAACAAGTG+AGG + chr3_4:48646468-48646487 None:intergenic 25.0%
!! TGTTTAAATTTTTCCTGAAC+AGG - chr3_4:48646472-48646491 Msa0504360:intron 25.0%
!! GTTTAAATTTTTCCTGAACA+GGG - chr3_4:48646473-48646492 Msa0504360:intron 25.0%
! ATTTCCTATATATCTTCTCA+GGG - chr3_4:48646669-48646688 Msa0504360:intron 25.0%
! TGTTAATGGTCAATTTATCT+CGG - chr3_4:48646810-48646829 Msa0504360:intron 25.0%
!!! CAATCTGAAAAGTATCAATT+TGG - chr3_4:48646916-48646935 Msa0504360:intron 25.0%
!! TAAGATTTCATCGAAGTATT+AGG + chr3_4:48646978-48646997 None:intergenic 25.0%
! AAATAAGTAAAGAGAATGGA+TGG + chr3_4:48647023-48647042 None:intergenic 25.0%
! CTGAAAATAAGTAAAGAGAA+TGG + chr3_4:48647027-48647046 None:intergenic 25.0%
!!! CATTCTCTTTACTTATTTTC+AGG - chr3_4:48647025-48647044 Msa0504360:intron 25.0%
!! ACAATATTTACCATTTTGTC+CGG + chr3_4:48647281-48647300 None:intergenic 25.0%
!!! TTTCTCTTTTTTGGTTCATT+TGG + chr3_4:48645309-48645328 None:intergenic 25.0%
! AATTTATGTAACACCTTTCT+TGG - chr3_4:48645561-48645580 Msa0504360:CDS 25.0%
! GAAAAAAGTGACAAGATTAT+TGG - chr3_4:48645607-48645626 Msa0504360:intron 25.0%
! TATTGGATTTAAAGATGGTT+AGG - chr3_4:48645624-48645643 Msa0504360:intron 25.0%
!!! ACCATCATATACTTTTTTGA+AGG + chr3_4:48645678-48645697 None:intergenic 25.0%
! TCATCATCATTAATCACAAT+TGG + chr3_4:48645722-48645741 None:intergenic 25.0%
! ACTTTCTCCAGAAATATTTA+AGG + chr3_4:48646039-48646058 None:intergenic 25.0%
!! GCTTAACATCATCTAAAATT+AGG - chr3_4:48646401-48646420 Msa0504360:intron 25.0%
! AGGAAAAATTTAAACAAGTG+AGG + chr3_4:48646468-48646487 None:intergenic 25.0%
!! TGTTTAAATTTTTCCTGAAC+AGG - chr3_4:48646472-48646491 Msa0504360:intron 25.0%
!! GTTTAAATTTTTCCTGAACA+GGG - chr3_4:48646473-48646492 Msa0504360:intron 25.0%
! ATTTCCTATATATCTTCTCA+GGG - chr3_4:48646669-48646688 Msa0504360:intron 25.0%
! TGTTAATGGTCAATTTATCT+CGG - chr3_4:48646810-48646829 Msa0504360:intron 25.0%
!!! CAATCTGAAAAGTATCAATT+TGG - chr3_4:48646916-48646935 Msa0504360:intron 25.0%
!! TAAGATTTCATCGAAGTATT+AGG + chr3_4:48646978-48646997 None:intergenic 25.0%
! AAATAAGTAAAGAGAATGGA+TGG + chr3_4:48647023-48647042 None:intergenic 25.0%
! CTGAAAATAAGTAAAGAGAA+TGG + chr3_4:48647027-48647046 None:intergenic 25.0%
!!! CATTCTCTTTACTTATTTTC+AGG - chr3_4:48647025-48647044 Msa0504360:intron 25.0%
!! ACAATATTTACCATTTTGTC+CGG + chr3_4:48647281-48647300 None:intergenic 25.0%
!! AAGAAAGAAAGACTTGTTGA+TGG - chr3_4:48645357-48645376 Msa0504360:three_prime_UTR 30.0%
ATATGAAGACTCACATAAGA+TGG + chr3_4:48645504-48645523 None:intergenic 30.0%
TTTCCTACAATATCCAAGAA+AGG + chr3_4:48645577-48645596 None:intergenic 30.0%
TAGTAATAGATTGAGAACCT+TGG - chr3_4:48645652-48645671 Msa0504360:intron 30.0%
!!! ATATACTTTTTTGAAGGCCA+AGG + chr3_4:48645672-48645691 None:intergenic 30.0%
! GCCTTCAAAAAAGTATATGA+TGG - chr3_4:48645674-48645693 Msa0504360:intron 30.0%
! AAAAAAGTATATGATGGTCC+TGG - chr3_4:48645680-48645699 Msa0504360:intron 30.0%
ATCATTAATCACAATTGGTC+TGG + chr3_4:48645717-48645736 None:intergenic 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - chr3_4:48645943-48645962 Msa0504360:CDS 30.0%
GTCTCATCCTTAAATATTTC+TGG - chr3_4:48646029-48646048 Msa0504360:intron 30.0%
TTGCGAATAGCAGAAAATAA+TGG - chr3_4:48646096-48646115 Msa0504360:intron 30.0%
ATCCACTTACAGAATATCTA+GGG + chr3_4:48646550-48646569 None:intergenic 30.0%
AATCCACTTACAGAATATCT+AGG + chr3_4:48646551-48646570 None:intergenic 30.0%
CATTTCCTATATATCTTCTC+AGG - chr3_4:48646668-48646687 Msa0504360:intron 30.0%
TTTCCTATATATCTTCTCAG+GGG - chr3_4:48646670-48646689 Msa0504360:intron 30.0%
!! TTTACTTATTTTCAGGCTCA+TGG - chr3_4:48647032-48647051 Msa0504360:CDS 30.0%
!! TTACTTATTTTCAGGCTCAT+GGG - chr3_4:48647033-48647052 Msa0504360:CDS 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - chr3_4:48647059-48647078 Msa0504360:intron 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + chr3_4:48647125-48647144 None:intergenic 30.0%
! CGTGACAAAGTATCAATTAT+CGG + chr3_4:48647158-48647177 None:intergenic 30.0%
! TCTTCATCAGAATTTTATGC+CGG - chr3_4:48647259-48647278 Msa0504360:CDS 30.0%
GGACAAAATGGTAAATATTG+TGG - chr3_4:48647280-48647299 Msa0504360:CDS 30.0%
! CATGTTCATTTTCCCATATT+TGG - chr3_4:48647398-48647417 Msa0504360:intron 30.0%
! TTCATTTTCCCATATTTGGT+GGG - chr3_4:48647402-48647421 Msa0504360:intron 30.0%
ATGAATTTCCCACCAAATAT+GGG + chr3_4:48647413-48647432 None:intergenic 30.0%
TATGAATTTCCCACCAAATA+TGG + chr3_4:48647414-48647433 None:intergenic 30.0%
TGTCACAAAATTGATGTGTT+TGG + chr3_4:48647484-48647503 None:intergenic 30.0%
!! AAGAAAGAAAGACTTGTTGA+TGG - chr3_4:48645357-48645376 Msa0504360:three_prime_UTR 30.0%
ATATGAAGACTCACATAAGA+TGG + chr3_4:48645504-48645523 None:intergenic 30.0%
TTTCCTACAATATCCAAGAA+AGG + chr3_4:48645577-48645596 None:intergenic 30.0%
TAGTAATAGATTGAGAACCT+TGG - chr3_4:48645652-48645671 Msa0504360:intron 30.0%
!!! ATATACTTTTTTGAAGGCCA+AGG + chr3_4:48645672-48645691 None:intergenic 30.0%
! GCCTTCAAAAAAGTATATGA+TGG - chr3_4:48645674-48645693 Msa0504360:intron 30.0%
! AAAAAAGTATATGATGGTCC+TGG - chr3_4:48645680-48645699 Msa0504360:intron 30.0%
ATCATTAATCACAATTGGTC+TGG + chr3_4:48645717-48645736 None:intergenic 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - chr3_4:48645943-48645962 Msa0504360:CDS 30.0%
GTCTCATCCTTAAATATTTC+TGG - chr3_4:48646029-48646048 Msa0504360:intron 30.0%
TTGCGAATAGCAGAAAATAA+TGG - chr3_4:48646096-48646115 Msa0504360:intron 30.0%
ATCCACTTACAGAATATCTA+GGG + chr3_4:48646550-48646569 None:intergenic 30.0%
AATCCACTTACAGAATATCT+AGG + chr3_4:48646551-48646570 None:intergenic 30.0%
CATTTCCTATATATCTTCTC+AGG - chr3_4:48646668-48646687 Msa0504360:intron 30.0%
TTTCCTATATATCTTCTCAG+GGG - chr3_4:48646670-48646689 Msa0504360:intron 30.0%
!! TTTACTTATTTTCAGGCTCA+TGG - chr3_4:48647032-48647051 Msa0504360:CDS 30.0%
!! TTACTTATTTTCAGGCTCAT+GGG - chr3_4:48647033-48647052 Msa0504360:CDS 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - chr3_4:48647059-48647078 Msa0504360:intron 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + chr3_4:48647125-48647144 None:intergenic 30.0%
! CGTGACAAAGTATCAATTAT+CGG + chr3_4:48647158-48647177 None:intergenic 30.0%
! TCTTCATCAGAATTTTATGC+CGG - chr3_4:48647259-48647278 Msa0504360:CDS 30.0%
GGACAAAATGGTAAATATTG+TGG - chr3_4:48647280-48647299 Msa0504360:CDS 30.0%
! CATGTTCATTTTCCCATATT+TGG - chr3_4:48647398-48647417 Msa0504360:intron 30.0%
! TTCATTTTCCCATATTTGGT+GGG - chr3_4:48647402-48647421 Msa0504360:intron 30.0%
ATGAATTTCCCACCAAATAT+GGG + chr3_4:48647413-48647432 None:intergenic 30.0%
TATGAATTTCCCACCAAATA+TGG + chr3_4:48647414-48647433 None:intergenic 30.0%
TGTCACAAAATTGATGTGTT+TGG + chr3_4:48647484-48647503 None:intergenic 30.0%
AATAGCTGGATCTGAAAAGA+GGG - chr3_4:48645169-48645188 Msa0504360:three_prime_UTR 35.0%
TGTGTTTCTTATAATAGGGG+AGG - chr3_4:48645253-48645272 Msa0504360:three_prime_UTR 35.0%
TTATAATAGGGGAGGACTAA+GGG - chr3_4:48645261-48645280 Msa0504360:three_prime_UTR 35.0%
CTATCAACCAGAATCAAGAA+GGG - chr3_4:48645385-48645404 Msa0504360:three_prime_UTR 35.0%
ACACCTTTCTTGGATATTGT+AGG - chr3_4:48645571-48645590 Msa0504360:CDS 35.0%
TGGATTTAAAGATGGTTAGG+AGG - chr3_4:48645627-48645646 Msa0504360:intron 35.0%
GTTGAGTTAAGAAGAAAGCA+GGG + chr3_4:48645870-48645889 None:intergenic 35.0%
AGTTGAGTTAAGAAGAAAGC+AGG + chr3_4:48645871-48645890 None:intergenic 35.0%
GAGACTATGTTGTCAAATAG+TGG + chr3_4:48646262-48646281 None:intergenic 35.0%
ATTCTACAAGACTCTGACTT+TGG + chr3_4:48646284-48646303 None:intergenic 35.0%
TCCACTTACAGAATATCTAG+GGG + chr3_4:48646549-48646568 None:intergenic 35.0%
! GTAAGTGGATTTATTGTTCC+TGG - chr3_4:48646560-48646579 Msa0504360:intron 35.0%
TATCCCCTGAGAAGATATAT+AGG + chr3_4:48646676-48646695 None:intergenic 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - chr3_4:48647058-48647077 Msa0504360:intron 35.0%
AGGACTACAAGAGAAGAAAA+CGG - chr3_4:48647219-48647238 Msa0504360:CDS 35.0%
! GAATTTTATGCCGGACAAAA+TGG - chr3_4:48647268-48647287 Msa0504360:CDS 35.0%
! TGGATAGAGCATTTCATTGA+TGG - chr3_4:48647300-48647319 Msa0504360:CDS 35.0%
! GGATAGAGCATTTCATTGAT+GGG - chr3_4:48647301-48647320 Msa0504360:CDS 35.0%
! GTTCATTTTCCCATATTTGG+TGG - chr3_4:48647401-48647420 Msa0504360:intron 35.0%
AATAGCTGGATCTGAAAAGA+GGG - chr3_4:48645169-48645188 Msa0504360:three_prime_UTR 35.0%
TGTGTTTCTTATAATAGGGG+AGG - chr3_4:48645253-48645272 Msa0504360:three_prime_UTR 35.0%
TTATAATAGGGGAGGACTAA+GGG - chr3_4:48645261-48645280 Msa0504360:three_prime_UTR 35.0%
CTATCAACCAGAATCAAGAA+GGG - chr3_4:48645385-48645404 Msa0504360:three_prime_UTR 35.0%
ACACCTTTCTTGGATATTGT+AGG - chr3_4:48645571-48645590 Msa0504360:CDS 35.0%
TGGATTTAAAGATGGTTAGG+AGG - chr3_4:48645627-48645646 Msa0504360:intron 35.0%
GTTGAGTTAAGAAGAAAGCA+GGG + chr3_4:48645870-48645889 None:intergenic 35.0%
AGTTGAGTTAAGAAGAAAGC+AGG + chr3_4:48645871-48645890 None:intergenic 35.0%
GAGACTATGTTGTCAAATAG+TGG + chr3_4:48646262-48646281 None:intergenic 35.0%
ATTCTACAAGACTCTGACTT+TGG + chr3_4:48646284-48646303 None:intergenic 35.0%
TCCACTTACAGAATATCTAG+GGG + chr3_4:48646549-48646568 None:intergenic 35.0%
! GTAAGTGGATTTATTGTTCC+TGG - chr3_4:48646560-48646579 Msa0504360:intron 35.0%
TATCCCCTGAGAAGATATAT+AGG + chr3_4:48646676-48646695 None:intergenic 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - chr3_4:48647058-48647077 Msa0504360:intron 35.0%
AGGACTACAAGAGAAGAAAA+CGG - chr3_4:48647219-48647238 Msa0504360:CDS 35.0%
! GAATTTTATGCCGGACAAAA+TGG - chr3_4:48647268-48647287 Msa0504360:CDS 35.0%
! TGGATAGAGCATTTCATTGA+TGG - chr3_4:48647300-48647319 Msa0504360:CDS 35.0%
! GGATAGAGCATTTCATTGAT+GGG - chr3_4:48647301-48647320 Msa0504360:CDS 35.0%
! GTTCATTTTCCCATATTTGG+TGG - chr3_4:48647401-48647420 Msa0504360:intron 35.0%
CAATAGCTGGATCTGAAAAG+AGG - chr3_4:48645168-48645187 Msa0504360:three_prime_UTR 40.0%
CTTATAATAGGGGAGGACTA+AGG - chr3_4:48645260-48645279 Msa0504360:three_prime_UTR 40.0%
! CCTTCTTGATTCTGGTTGAT+AGG + chr3_4:48645387-48645406 None:intergenic 40.0%
CCTATCAACCAGAATCAAGA+AGG - chr3_4:48645384-48645403 Msa0504360:three_prime_UTR 40.0%
GATGGCGAAAAACACATTTG+TGG - chr3_4:48645425-48645444 Msa0504360:three_prime_UTR 40.0%
ACAAGGTTCACTGCAGAAAT+TGG + chr3_4:48645453-48645472 None:intergenic 40.0%
CATAAGATGGTACAGCGTTA+GGG + chr3_4:48645491-48645510 None:intergenic 40.0%
ACATAAGATGGTACAGCGTT+AGG + chr3_4:48645492-48645511 None:intergenic 40.0%
AGGATGAGACACACAAGAAA+TGG + chr3_4:48646019-48646038 None:intergenic 40.0%
TTGAAGTTACTGTACGCAAC+AGG - chr3_4:48646123-48646142 Msa0504360:CDS 40.0%
TGAAGTTACTGTACGCAACA+GGG - chr3_4:48646124-48646143 Msa0504360:CDS 40.0%
! GTTGCAGAATATGAAGCATC+TGG + chr3_4:48646331-48646350 None:intergenic 40.0%
TGAGGAACGAGAAAGTTCAA+TGG + chr3_4:48646450-48646469 None:intergenic 40.0%
ATCTAGGGGCTATATCTTGA+TGG + chr3_4:48646535-48646554 None:intergenic 40.0%
! TCAGTGCTACTGAAAATTCC+AGG + chr3_4:48646581-48646600 None:intergenic 40.0%
!! AGAGAATGGATGGTGTCATA+TGG + chr3_4:48647013-48647032 None:intergenic 40.0%
! CTCATGGGATGATGTTTTCA+AGG - chr3_4:48647048-48647067 Msa0504360:CDS 40.0%
GGTTTCAGTTGGGCTATATT+TGG - chr3_4:48647069-48647088 Msa0504360:intron 40.0%
TCAGTTGGGCTATATTTGGT+CGG - chr3_4:48647073-48647092 Msa0504360:intron 40.0%
CTAATCCAATCCTTCTTCCA+AGG + chr3_4:48647351-48647370 None:intergenic 40.0%
CAATAGCTGGATCTGAAAAG+AGG - chr3_4:48645168-48645187 Msa0504360:three_prime_UTR 40.0%
CTTATAATAGGGGAGGACTA+AGG - chr3_4:48645260-48645279 Msa0504360:three_prime_UTR 40.0%
! CCTTCTTGATTCTGGTTGAT+AGG + chr3_4:48645387-48645406 None:intergenic 40.0%
CCTATCAACCAGAATCAAGA+AGG - chr3_4:48645384-48645403 Msa0504360:three_prime_UTR 40.0%
GATGGCGAAAAACACATTTG+TGG - chr3_4:48645425-48645444 Msa0504360:three_prime_UTR 40.0%
ACAAGGTTCACTGCAGAAAT+TGG + chr3_4:48645453-48645472 None:intergenic 40.0%
CATAAGATGGTACAGCGTTA+GGG + chr3_4:48645491-48645510 None:intergenic 40.0%
ACATAAGATGGTACAGCGTT+AGG + chr3_4:48645492-48645511 None:intergenic 40.0%
AGGATGAGACACACAAGAAA+TGG + chr3_4:48646019-48646038 None:intergenic 40.0%
TTGAAGTTACTGTACGCAAC+AGG - chr3_4:48646123-48646142 Msa0504360:CDS 40.0%
TGAAGTTACTGTACGCAACA+GGG - chr3_4:48646124-48646143 Msa0504360:CDS 40.0%
! GTTGCAGAATATGAAGCATC+TGG + chr3_4:48646331-48646350 None:intergenic 40.0%
TGAGGAACGAGAAAGTTCAA+TGG + chr3_4:48646450-48646469 None:intergenic 40.0%
ATCTAGGGGCTATATCTTGA+TGG + chr3_4:48646535-48646554 None:intergenic 40.0%
! TCAGTGCTACTGAAAATTCC+AGG + chr3_4:48646581-48646600 None:intergenic 40.0%
!! AGAGAATGGATGGTGTCATA+TGG + chr3_4:48647013-48647032 None:intergenic 40.0%
! CTCATGGGATGATGTTTTCA+AGG - chr3_4:48647048-48647067 Msa0504360:CDS 40.0%
GGTTTCAGTTGGGCTATATT+TGG - chr3_4:48647069-48647088 Msa0504360:intron 40.0%
TCAGTTGGGCTATATTTGGT+CGG - chr3_4:48647073-48647092 Msa0504360:intron 40.0%
CTAATCCAATCCTTCTTCCA+AGG + chr3_4:48647351-48647370 None:intergenic 40.0%
TACACAAGAGCTACCAATGC+AGG - chr3_4:48645139-48645158 Msa0504360:three_prime_UTR 45.0%
ACACAAGAGCTACCAATGCA+GGG - chr3_4:48645140-48645159 Msa0504360:three_prime_UTR 45.0%
GCTATTGAACTTCCCTGCAT+TGG + chr3_4:48645155-48645174 None:intergenic 45.0%
ATGCAGGGAAGTTCAATAGC+TGG - chr3_4:48645155-48645174 Msa0504360:three_prime_UTR 45.0%
TTTCGCCATCATATCGCCAT+CGG + chr3_4:48645415-48645434 None:intergenic 45.0%
GGTCTGGATTTATCACTACC+AGG + chr3_4:48645701-48645720 None:intergenic 45.0%
! GTTGTGTATGACTTGCAGTC+AGG - chr3_4:48645921-48645940 Msa0504360:CDS 45.0%
GCCCCTAGATATTCTGTAAG+TGG - chr3_4:48646545-48646564 Msa0504360:intron 45.0%
TCTTCTCAGGGGATATTGCT+CGG - chr3_4:48646681-48646700 Msa0504360:intron 45.0%
ACAGGTTACATTCTGCAGCA+TGG - chr3_4:48646753-48646772 Msa0504360:intron 45.0%
! TGAAAGATGCACTGCTGCTT+TGG + chr3_4:48646955-48646974 None:intergenic 45.0%
! TCTTTTCACCGGTCGAGAAA+AGG + chr3_4:48647114-48647133 None:intergenic 45.0%
CTCGAGTACTTTCTCACAGA+AGG - chr3_4:48647196-48647215 Msa0504360:CDS 45.0%
GAGTACTTTCTCACAGAAGG+AGG - chr3_4:48647199-48647218 Msa0504360:CDS 45.0%
!!! TCCTTTTTGGCCTTGGAAGA+AGG - chr3_4:48647338-48647357 Msa0504360:CDS 45.0%
TCCTTCTTCCAAGGCCAAAA+AGG + chr3_4:48647342-48647361 None:intergenic 45.0%
!! TTTGGCCTTGGAAGAAGGAT+TGG - chr3_4:48647343-48647362 Msa0504360:CDS 45.0%
TACACAAGAGCTACCAATGC+AGG - chr3_4:48645139-48645158 Msa0504360:three_prime_UTR 45.0%
ACACAAGAGCTACCAATGCA+GGG - chr3_4:48645140-48645159 Msa0504360:three_prime_UTR 45.0%
GCTATTGAACTTCCCTGCAT+TGG + chr3_4:48645155-48645174 None:intergenic 45.0%
ATGCAGGGAAGTTCAATAGC+TGG - chr3_4:48645155-48645174 Msa0504360:three_prime_UTR 45.0%
TTTCGCCATCATATCGCCAT+CGG + chr3_4:48645415-48645434 None:intergenic 45.0%
GGTCTGGATTTATCACTACC+AGG + chr3_4:48645701-48645720 None:intergenic 45.0%
! GTTGTGTATGACTTGCAGTC+AGG - chr3_4:48645921-48645940 Msa0504360:CDS 45.0%
GCCCCTAGATATTCTGTAAG+TGG - chr3_4:48646545-48646564 Msa0504360:intron 45.0%
TCTTCTCAGGGGATATTGCT+CGG - chr3_4:48646681-48646700 Msa0504360:intron 45.0%
ACAGGTTACATTCTGCAGCA+TGG - chr3_4:48646753-48646772 Msa0504360:intron 45.0%
! TGAAAGATGCACTGCTGCTT+TGG + chr3_4:48646955-48646974 None:intergenic 45.0%
! TCTTTTCACCGGTCGAGAAA+AGG + chr3_4:48647114-48647133 None:intergenic 45.0%
CTCGAGTACTTTCTCACAGA+AGG - chr3_4:48647196-48647215 Msa0504360:CDS 45.0%
GAGTACTTTCTCACAGAAGG+AGG - chr3_4:48647199-48647218 Msa0504360:CDS 45.0%
!!! TCCTTTTTGGCCTTGGAAGA+AGG - chr3_4:48647338-48647357 Msa0504360:CDS 45.0%
TCCTTCTTCCAAGGCCAAAA+AGG + chr3_4:48647342-48647361 None:intergenic 45.0%
!! TTTGGCCTTGGAAGAAGGAT+TGG - chr3_4:48647343-48647362 Msa0504360:CDS 45.0%
AATCAAGAAGGGTCTGCCGA+TGG - chr3_4:48645396-48645415 Msa0504360:three_prime_UTR 50.0%
GGTCAGCAGTTGTTGGTACA+AGG + chr3_4:48645470-48645489 None:intergenic 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - chr3_4:48645891-48645910 Msa0504360:intron 50.0%
CCACCACAGGAGAATCAATG+TGG + chr3_4:48645897-48645916 None:intergenic 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - chr3_4:48645894-48645913 Msa0504360:intron 50.0%
ATACACAACACAGCCACCAC+AGG + chr3_4:48645910-48645929 None:intergenic 50.0%
AATGCGTCAGTTCCCTGTTC+AGG + chr3_4:48646488-48646507 None:intergenic 50.0%
ACTGACGCATTCTCTCAGTC+TGG - chr3_4:48646497-48646516 Msa0504360:intron 50.0%
CTCGGTCTATCCAATACTGC+TGG - chr3_4:48646699-48646718 Msa0504360:intron 50.0%
AGCTAGCACTCCAGCAGTAT+TGG + chr3_4:48646712-48646731 None:intergenic 50.0%
! AATACTGCTGGAGTGCTAGC+TGG - chr3_4:48646711-48646730 Msa0504360:intron 50.0%
AACCTGTTGCTGCTGTTCCA+AGG + chr3_4:48646740-48646759 None:intergenic 50.0%
GCTATATTTGGTCGGAACCG+TGG - chr3_4:48647081-48647100 Msa0504360:intron 50.0%
CGAGAAAAGGTTCCACACCA+CGG + chr3_4:48647101-48647120 None:intergenic 50.0%
! GTGTGGAACCTTTTCTCGAC+CGG - chr3_4:48647103-48647122 Msa0504360:intron 50.0%
! GCGATTACGCGAGTCCTTTT+TGG - chr3_4:48647325-48647344 Msa0504360:CDS 50.0%
AATCAAGAAGGGTCTGCCGA+TGG - chr3_4:48645396-48645415 Msa0504360:three_prime_UTR 50.0%
GGTCAGCAGTTGTTGGTACA+AGG + chr3_4:48645470-48645489 None:intergenic 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - chr3_4:48645891-48645910 Msa0504360:intron 50.0%
CCACCACAGGAGAATCAATG+TGG + chr3_4:48645897-48645916 None:intergenic 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - chr3_4:48645894-48645913 Msa0504360:intron 50.0%
ATACACAACACAGCCACCAC+AGG + chr3_4:48645910-48645929 None:intergenic 50.0%
AATGCGTCAGTTCCCTGTTC+AGG + chr3_4:48646488-48646507 None:intergenic 50.0%
ACTGACGCATTCTCTCAGTC+TGG - chr3_4:48646497-48646516 Msa0504360:intron 50.0%
CTCGGTCTATCCAATACTGC+TGG - chr3_4:48646699-48646718 Msa0504360:intron 50.0%
AGCTAGCACTCCAGCAGTAT+TGG + chr3_4:48646712-48646731 None:intergenic 50.0%
! AATACTGCTGGAGTGCTAGC+TGG - chr3_4:48646711-48646730 Msa0504360:intron 50.0%
AACCTGTTGCTGCTGTTCCA+AGG + chr3_4:48646740-48646759 None:intergenic 50.0%
GCTATATTTGGTCGGAACCG+TGG - chr3_4:48647081-48647100 Msa0504360:intron 50.0%
CGAGAAAAGGTTCCACACCA+CGG + chr3_4:48647101-48647120 None:intergenic 50.0%
! GTGTGGAACCTTTTCTCGAC+CGG - chr3_4:48647103-48647122 Msa0504360:intron 50.0%
! GCGATTACGCGAGTCCTTTT+TGG - chr3_4:48647325-48647344 Msa0504360:CDS 50.0%
CGGCAGACCCTTCTTGATTC+TGG + chr3_4:48645395-48645414 None:intergenic 55.0%
GTCTGCCGATGGCGATATGA+TGG - chr3_4:48645407-48645426 Msa0504360:three_prime_UTR 55.0%
GCGTTAGGGTCAGCAGTTGT+TGG + chr3_4:48645477-48645496 None:intergenic 55.0%
GTCCTTGGAACAGCAGCAAC+AGG - chr3_4:48646735-48646754 Msa0504360:intron 55.0%
ATTTGGTCGGAACCGTGGTG+TGG - chr3_4:48647086-48647105 Msa0504360:intron 55.0%
!! ACGCGAGTCCTTTTTGGCCT+TGG - chr3_4:48647331-48647350 Msa0504360:CDS 55.0%
CGGCAGACCCTTCTTGATTC+TGG + chr3_4:48645395-48645414 None:intergenic 55.0%
GTCTGCCGATGGCGATATGA+TGG - chr3_4:48645407-48645426 Msa0504360:three_prime_UTR 55.0%
GCGTTAGGGTCAGCAGTTGT+TGG + chr3_4:48645477-48645496 None:intergenic 55.0%
GTCCTTGGAACAGCAGCAAC+AGG - chr3_4:48646735-48646754 Msa0504360:intron 55.0%
ATTTGGTCGGAACCGTGGTG+TGG - chr3_4:48647086-48647105 Msa0504360:intron 55.0%
!! ACGCGAGTCCTTTTTGGCCT+TGG - chr3_4:48647331-48647350 Msa0504360:CDS 55.0%
! GGAGTGCTAGCTGGTGTCCT+TGG - chr3_4:48646720-48646739 Msa0504360:intron 60.0%
! GGAGTGCTAGCTGGTGTCCT+TGG - chr3_4:48646720-48646739 Msa0504360:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 48645128 48647538 48645128 ID=Msa0504360;Name=Msa0504360
chr3_4 mRNA 48645128 48647538 48645128 ID=Msa0504360-mRNA-1;Parent=Msa0504360;Name=Msa0504360-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.4|0.33|1|1|1|6|394|193
chr3_4 exon 48645128 48645619 48645128 ID=Msa0504360-mRNA-1:exon:10484;Parent=Msa0504360-mRNA-1
chr3_4 exon 48645910 48645976 48645910 ID=Msa0504360-mRNA-1:exon:10483;Parent=Msa0504360-mRNA-1
chr3_4 exon 48646107 48646172 48646107 ID=Msa0504360-mRNA-1:exon:10482;Parent=Msa0504360-mRNA-1
chr3_4 exon 48647026 48647073 48647026 ID=Msa0504360-mRNA-1:exon:10481;Parent=Msa0504360-mRNA-1
chr3_4 exon 48647157 48647396 48647157 ID=Msa0504360-mRNA-1:exon:10480;Parent=Msa0504360-mRNA-1
chr3_4 exon 48647476 48647538 48647476 ID=Msa0504360-mRNA-1:exon:10479;Parent=Msa0504360-mRNA-1
chr3_4 CDS 48647476 48647538 48647476 ID=Msa0504360-mRNA-1:cds;Parent=Msa0504360-mRNA-1
chr3_4 CDS 48647157 48647396 48647157 ID=Msa0504360-mRNA-1:cds;Parent=Msa0504360-mRNA-1
chr3_4 CDS 48647026 48647073 48647026 ID=Msa0504360-mRNA-1:cds;Parent=Msa0504360-mRNA-1
chr3_4 CDS 48646107 48646172 48646107 ID=Msa0504360-mRNA-1:cds;Parent=Msa0504360-mRNA-1
chr3_4 CDS 48645910 48645976 48645910 ID=Msa0504360-mRNA-1:cds;Parent=Msa0504360-mRNA-1
chr3_4 CDS 48645522 48645619 48645522 ID=Msa0504360-mRNA-1:cds;Parent=Msa0504360-mRNA-1
chr3_4 three_prime_UTR 48645128 48645521 48645128 ID=Msa0504360-mRNA-1:three_prime_utr;Parent=Msa0504360-mRNA-1
Gene Sequence

>Msa0504360

ATGGTGTTTGCTACACAAGAGCTACCAATGCAGGGAAGTTCAATAGCTGGATCTGAAAAGAGGGGGAGGACTAAGGGAAATACTCTAAGTAATGTTAAACCAAATGAACCAAAAAAGAGAAAAATAAAAGGACTCAATGTGTGTTATAAGAAGAAAGAAAGACTTGTTGATGGAGAGCCTATCAACCAGAATCAAGAAGGGTCTGCCGATGGCGATATGATGGCGAAAAACACATTTGTGGAGCCAATTTCTGCAGTGAACCTTGTACCAACAACTGCTGACCCTAACGCTGTACCATCTTATGAAAAGAAAAGAAAGAAAAAAGTGACAAGATTATTGGATTTAAAGATGGGAACTGACGCATTCTCTCAGTCTGGATTATATTCAAACCATCAAGATATAGCCCCTAGATATTCTGGGATATTGCTCGGTCTATCCAATACTGCTGGAGTGCTAGCTGGTGTCCTTGGAACAGCAGCAACAGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGCTATATTTGGTCGGAACCGTGGTGTGGAACCTTTTCTCGACCGGTGAAAAGATCATAGACTAA

Protein sequence

>Msa0504360

MVFATQELPMQGSSIAGSEKRGRTKGNTLSNVKPNEPKKRKIKGLNVCYKKKERLVDGEPINQNQEGSADGDMMAKNTFVEPISAVNLVPTTADPNAVPSYEKKRKKKVTRLLDLKMGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID*