Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799690 | RHN54296.1 | 63.953 | 86 | 31 | 0 | 1 | 86 | 104 | 189 | 2.13e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799690 | sp|Q84UI6|EZ1_ORYSI | 67.391 | 46 | 15 | 0 | 10 | 55 | 528 | 573 | 1.26e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799690 | A0A396HLS8 | 63.953 | 86 | 31 | 0 | 1 | 86 | 104 | 189 | 1.02e-30 | 118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717240 | Msa0799690 | 0.848697 | 5.197310e-60 | -8.615850e-47 |
| Msa0799690 | Msa0876030 | 0.807489 | 4.930590e-50 | -8.615850e-47 |
| Msa0799690 | Msa0930950 | 0.804114 | 2.523084e-49 | -8.615850e-47 |
| Msa0799690 | Msa1349850 | 0.806770 | 7.001334e-50 | -8.615850e-47 |
| Msa0279090 | Msa0799690 | 0.802499 | 5.450418e-49 | -8.615850e-47 |
| Msa0504360 | Msa0799690 | 0.803753 | 2.999744e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799690 | MtrunA17_Chr5g0405161 | 63.953 | 86 | 31 | 0 | 1 | 86 | 104 | 189 | 1.96e-34 | 118 |
| Msa0799690 | MtrunA17_Chr7g0270011 | 60.294 | 68 | 27 | 0 | 1 | 68 | 220 | 287 | 2.27e-22 | 88.6 |
| Msa0799690 | MtrunA17_Chr1g0194631 | 57.576 | 66 | 27 | 1 | 1 | 65 | 381 | 446 | 4.23e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTAATTAACTAATTTAA+TGG | 0.168699 | 5_3:-12967389 | Msa0799690:five_prime_UTR |
| TGTATCAAATTGGAAACTTT+TGG | 0.229973 | 5_3:-12967157 | Msa0799690:CDS |
| GTACCACAATTAGTAATATT+AGG | 0.239236 | 5_3:-12967284 | Msa0799690:five_prime_UTR |
| AAAACTTATAACATGAAATA+AGG | 0.243688 | 5_3:+12966170 | None:intergenic |
| CATTGTTACCTTTATTATAA+AGG | 0.264613 | 5_3:-12967306 | Msa0799690:five_prime_UTR |
| TTGTGGTACCTTTATAATAA+AGG | 0.276514 | 5_3:+12967298 | None:intergenic |
| CAAAGAATCAACGGCACCTT+TGG | 0.293853 | 5_3:+12966199 | None:intergenic |
| TTGAAGGGAATAGAAATGTT+TGG | 0.325803 | 5_3:-12967120 | Msa0799690:CDS |
| AAACTAAGTTCCGGGATATA+AGG | 0.328511 | 5_3:+12967005 | None:intergenic |
| TTTCTTTGAATTTCCTTGCT+GGG | 0.331179 | 5_3:+12966395 | None:intergenic |
| AGAAAGTAAAGCAACCAATT+TGG | 0.337679 | 5_3:-12967356 | Msa0799690:five_prime_UTR |
| CCATGACATATGTTTCTTCA+TGG | 0.347187 | 5_3:+12967241 | None:intergenic |
| GGAAGTGTAGTGTATCAAAT+TGG | 0.351192 | 5_3:-12967167 | Msa0799690:CDS |
| TGAAGGGAATAGAAATGTTT+GGG | 0.351690 | 5_3:-12967119 | Msa0799690:CDS |
| TTAGTTAATTAATTAATTAA+CGG | 0.359548 | 5_3:+12967397 | None:intergenic |
| TACCACAATTAGTAATATTA+GGG | 0.386434 | 5_3:-12967283 | Msa0799690:five_prime_UTR |
| AGTGAATTACAAATAACTTA+TGG | 0.389288 | 5_3:-12966224 | Msa0799690:exon |
| AAAGAATCAACGGCACCTTT+GGG | 0.389733 | 5_3:+12966200 | None:intergenic |
| GAACTTCAAAACTAAGTTCC+GGG | 0.417808 | 5_3:+12966997 | None:intergenic |
| TCTCTGTCACCTGACCAAAT+TGG | 0.425560 | 5_3:+12967342 | None:intergenic |
| AAACTTATAACATGAAATAA+GGG | 0.432586 | 5_3:+12966171 | None:intergenic |
| TAATATTAGGGATCAAAAGT+TGG | 0.446472 | 5_3:-12967271 | Msa0799690:five_prime_UTR |
| ATCCCTAATATTACTAATTG+TGG | 0.449342 | 5_3:+12967281 | None:intergenic |
| TGAACTTCAAAACTAAGTTC+CGG | 0.450013 | 5_3:+12966996 | None:intergenic |
| AGCAAGGAAATTCAAAGAAA+AGG | 0.453283 | 5_3:-12966392 | Msa0799690:CDS |
| CATGACATATGTTTCTTCAT+GGG | 0.470409 | 5_3:+12967242 | None:intergenic |
| TTCTTTGAATTTCCTTGCTG+GGG | 0.492314 | 5_3:+12966396 | None:intergenic |
| GAAGCTCTTGTCTAACTCAA+TGG | 0.498233 | 5_3:-12967205 | Msa0799690:exon |
| TTTATGTATCCATGTGGCAT+TGG | 0.503404 | 5_3:+12966932 | None:intergenic |
| GTAAAGCAACCAATTTGGTC+AGG | 0.506279 | 5_3:-12967351 | Msa0799690:five_prime_UTR |
| AATTCAAAGAAAAGGAGAGA+AGG | 0.523615 | 5_3:-12966384 | Msa0799690:CDS |
| TCAATGGAAGGACAAGTTGA+AGG | 0.530417 | 5_3:-12967189 | Msa0799690:CDS |
| CCATGAAGAAACATATGTCA+TGG | 0.550523 | 5_3:-12967241 | Msa0799690:five_prime_UTR |
| CAAATAACTTATGGCCCCAA+AGG | 0.552574 | 5_3:-12966215 | Msa0799690:exon |
| ACAACATGCAAATTGAGCTC+AGG | 0.553855 | 5_3:-12966358 | Msa0799690:intron |
| TATGCAGTTGCCTTATATCC+CGG | 0.571134 | 5_3:-12967015 | Msa0799690:intron |
| TTTGAAGTTCATGACTTGCA+AGG | 0.582315 | 5_3:-12966984 | Msa0799690:CDS |
| CTCTTGTCTAACTCAATGGA+AGG | 0.588123 | 5_3:-12967201 | Msa0799690:exon |
| CAATGGAAGGACAAGTTGAA+GGG | 0.589143 | 5_3:-12967188 | Msa0799690:CDS |
| AAGAATCAACGGCACCTTTG+GGG | 0.615717 | 5_3:+12966201 | None:intergenic |
| AGGGATAAACAAAGAATCAA+CGG | 0.622082 | 5_3:+12966190 | None:intergenic |
| GTTGAAGTTCCAATGCCACA+TGG | 0.643076 | 5_3:-12966941 | Msa0799690:CDS |
| GAACTCATAGAACCCCAGCA+AGG | 0.686860 | 5_3:-12966408 | Msa0799690:intron |
| AGGTAACAATGATCACCACA+TGG | 0.719423 | 5_3:+12967318 | None:intergenic |
| TCAGGTGACAGAGAACCATG+TGG | 0.855850 | 5_3:-12967333 | Msa0799690:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTCCTTTT+TGG | - | chr5_3:12967119-12967138 | Msa0799690:CDS | 10.0% |
| !!! | TTTTTTTTTTTTTCCTTTTT+GGG | - | chr5_3:12967120-12967139 | Msa0799690:CDS | 10.0% |
| !!! | ATTTTTTTTTTTTTCCTTTT+TGG | - | chr5_3:12967119-12967138 | Msa0799690:CDS | 10.0% |
| !!! | TTTTTTTTTTTTTCCTTTTT+GGG | - | chr5_3:12967120-12967139 | Msa0799690:CDS | 10.0% |
| !!! | TAATATAGTTTTAAAGTGTA+AGG | + | chr5_3:12966501-12966520 | None:intergenic | 15.0% |
| !! | AGATAAGAAAATATAGTATA+TGG | + | chr5_3:12966721-12966740 | None:intergenic | 15.0% |
| !! | CTTATCTACTAAAATATATT+TGG | - | chr5_3:12966734-12966753 | Msa0799690:intron | 15.0% |
| !! | AAAGGAAAAAAAAAAAAATG+AGG | + | chr5_3:12967118-12967137 | None:intergenic | 15.0% |
| !! | GGTTATTATTTAAATAGTAA+GGG | + | chr5_3:12967255-12967274 | None:intergenic | 15.0% |
| !! | TGGTTATTATTTAAATAGTA+AGG | + | chr5_3:12967256-12967275 | None:intergenic | 15.0% |
| !! | TGATTAAATATGTATATTTC+AGG | - | chr5_3:12967289-12967308 | Msa0799690:five_prime_UTR | 15.0% |
| !! | AAACTTATAACATGAAATAA+GGG | + | chr5_3:12967394-12967413 | None:intergenic | 15.0% |
| !! | AAAACTTATAACATGAAATA+AGG | + | chr5_3:12967395-12967414 | None:intergenic | 15.0% |
| !!! | TAATATAGTTTTAAAGTGTA+AGG | + | chr5_3:12966501-12966520 | None:intergenic | 15.0% |
| !! | AGATAAGAAAATATAGTATA+TGG | + | chr5_3:12966721-12966740 | None:intergenic | 15.0% |
| !! | CTTATCTACTAAAATATATT+TGG | - | chr5_3:12966734-12966753 | Msa0799690:intron | 15.0% |
| !! | AAAGGAAAAAAAAAAAAATG+AGG | + | chr5_3:12967118-12967137 | None:intergenic | 15.0% |
| !! | GGTTATTATTTAAATAGTAA+GGG | + | chr5_3:12967255-12967274 | None:intergenic | 15.0% |
| !! | TGGTTATTATTTAAATAGTA+AGG | + | chr5_3:12967256-12967275 | None:intergenic | 15.0% |
| !! | TGATTAAATATGTATATTTC+AGG | - | chr5_3:12967289-12967308 | Msa0799690:five_prime_UTR | 15.0% |
| !! | AAACTTATAACATGAAATAA+GGG | + | chr5_3:12967394-12967413 | None:intergenic | 15.0% |
| !! | AAAACTTATAACATGAAATA+AGG | + | chr5_3:12967395-12967414 | None:intergenic | 15.0% |
| !! | CATTGTTACCTTTATTATAA+AGG | - | chr5_3:12966256-12966275 | Msa0799690:intron | 20.0% |
| !! | TACCACAATTAGTAATATTA+GGG | - | chr5_3:12966279-12966298 | Msa0799690:intron | 20.0% |
| !! | GAAAAAGAATTATGTTTGAA+GGG | - | chr5_3:12966427-12966446 | Msa0799690:intron | 20.0% |
| !! | AAAAATGTAGTTGAAAAGAT+TGG | - | chr5_3:12966847-12966866 | Msa0799690:intron | 20.0% |
| !! | AAAATGTAGTTGAAAAGATT+GGG | - | chr5_3:12966848-12966867 | Msa0799690:intron | 20.0% |
| !! | TTAATCAAAGATCATTAGAA+TGG | + | chr5_3:12967276-12967295 | None:intergenic | 20.0% |
| !! | AGTGAATTACAAATAACTTA+TGG | - | chr5_3:12967338-12967357 | Msa0799690:five_prime_UTR | 20.0% |
| !! | CATTGTTACCTTTATTATAA+AGG | - | chr5_3:12966256-12966275 | Msa0799690:intron | 20.0% |
| !! | TACCACAATTAGTAATATTA+GGG | - | chr5_3:12966279-12966298 | Msa0799690:intron | 20.0% |
| !! | GAAAAAGAATTATGTTTGAA+GGG | - | chr5_3:12966427-12966446 | Msa0799690:intron | 20.0% |
| !! | AAAAATGTAGTTGAAAAGAT+TGG | - | chr5_3:12966847-12966866 | Msa0799690:intron | 20.0% |
| !! | AAAATGTAGTTGAAAAGATT+GGG | - | chr5_3:12966848-12966867 | Msa0799690:intron | 20.0% |
| !! | TTAATCAAAGATCATTAGAA+TGG | + | chr5_3:12967276-12967295 | None:intergenic | 20.0% |
| !! | AGTGAATTACAAATAACTTA+TGG | - | chr5_3:12967338-12967357 | Msa0799690:five_prime_UTR | 20.0% |
| ! | TTGTGGTACCTTTATAATAA+AGG | + | chr5_3:12966267-12966286 | None:intergenic | 25.0% |
| ! | GTACCACAATTAGTAATATT+AGG | - | chr5_3:12966278-12966297 | Msa0799690:intron | 25.0% |
| ! | ATCCCTAATATTACTAATTG+TGG | + | chr5_3:12966284-12966303 | None:intergenic | 25.0% |
| ! | TAATATTAGGGATCAAAAGT+TGG | - | chr5_3:12966291-12966310 | Msa0799690:intron | 25.0% |
| !! | TGTATCAAATTGGAAACTTT+TGG | - | chr5_3:12966405-12966424 | Msa0799690:intron | 25.0% |
| ! | GGAAAAAGAATTATGTTTGA+AGG | - | chr5_3:12966426-12966445 | Msa0799690:intron | 25.0% |
| ! | TAGAAATGTTTGGGAAAAAT+AGG | - | chr5_3:12966452-12966471 | Msa0799690:intron | 25.0% |
| ! | TTACTAGTCATGTTAATAGA+AGG | - | chr5_3:12966785-12966804 | Msa0799690:intron | 25.0% |
| !! | AATAGAAGGTTTGAAATTGA+AGG | - | chr5_3:12966799-12966818 | Msa0799690:intron | 25.0% |
| ! | TTGAAATTGAAGGAAGTTAA+TGG | - | chr5_3:12966809-12966828 | Msa0799690:intron | 25.0% |
| ! | TGAAATTGAAGGAAGTTAAT+GGG | - | chr5_3:12966810-12966829 | Msa0799690:intron | 25.0% |
| ! | TGTTATCTTGTCTTGATTAA+TGG | + | chr5_3:12966913-12966932 | None:intergenic | 25.0% |
| ! | TTCTTTGCTAAGATTTCAAA+AGG | - | chr5_3:12967003-12967022 | Msa0799690:CDS | 25.0% |
| ! | TTGTGGTACCTTTATAATAA+AGG | + | chr5_3:12966267-12966286 | None:intergenic | 25.0% |
| ! | GTACCACAATTAGTAATATT+AGG | - | chr5_3:12966278-12966297 | Msa0799690:intron | 25.0% |
| ! | ATCCCTAATATTACTAATTG+TGG | + | chr5_3:12966284-12966303 | None:intergenic | 25.0% |
| ! | TAATATTAGGGATCAAAAGT+TGG | - | chr5_3:12966291-12966310 | Msa0799690:intron | 25.0% |
| !! | TGTATCAAATTGGAAACTTT+TGG | - | chr5_3:12966405-12966424 | Msa0799690:intron | 25.0% |
| ! | GGAAAAAGAATTATGTTTGA+AGG | - | chr5_3:12966426-12966445 | Msa0799690:intron | 25.0% |
| ! | TAGAAATGTTTGGGAAAAAT+AGG | - | chr5_3:12966452-12966471 | Msa0799690:intron | 25.0% |
| ! | TTACTAGTCATGTTAATAGA+AGG | - | chr5_3:12966785-12966804 | Msa0799690:intron | 25.0% |
| !! | AATAGAAGGTTTGAAATTGA+AGG | - | chr5_3:12966799-12966818 | Msa0799690:intron | 25.0% |
| ! | TTGAAATTGAAGGAAGTTAA+TGG | - | chr5_3:12966809-12966828 | Msa0799690:intron | 25.0% |
| ! | TGAAATTGAAGGAAGTTAAT+GGG | - | chr5_3:12966810-12966829 | Msa0799690:intron | 25.0% |
| ! | TGTTATCTTGTCTTGATTAA+TGG | + | chr5_3:12966913-12966932 | None:intergenic | 25.0% |
| ! | TTCTTTGCTAAGATTTCAAA+AGG | - | chr5_3:12967003-12967022 | Msa0799690:CDS | 25.0% |
| AGAAAGTAAAGCAACCAATT+TGG | - | chr5_3:12966206-12966225 | Msa0799690:three_prime_UTR | 30.0% | |
| CATGACATATGTTTCTTCAT+GGG | + | chr5_3:12966323-12966342 | None:intergenic | 30.0% | |
| TTGAAGGGAATAGAAATGTT+TGG | - | chr5_3:12966442-12966461 | Msa0799690:intron | 30.0% | |
| TGAAGGGAATAGAAATGTTT+GGG | - | chr5_3:12966443-12966462 | Msa0799690:intron | 30.0% | |
| TGAACTTCAAAACTAAGTTC+CGG | + | chr5_3:12966569-12966588 | None:intergenic | 30.0% | |
| ! | TTTTCGTTTATGTATCCATG+TGG | + | chr5_3:12966639-12966658 | None:intergenic | 30.0% |
| ACTTGCAGTTAAGAAAGAAA+CGG | + | chr5_3:12966947-12966966 | None:intergenic | 30.0% | |
| TTCTTAACTGCAAGTAACTT+TGG | - | chr5_3:12966952-12966971 | Msa0799690:CDS | 30.0% | |
| !! | TTTTCCTTTTTGGGCATTTT+AGG | - | chr5_3:12967129-12967148 | Msa0799690:CDS | 30.0% |
| TTTCTTTGAATTTCCTTGCT+GGG | + | chr5_3:12967170-12967189 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGAATTTCCTTGC+TGG | + | chr5_3:12967171-12967190 | None:intergenic | 30.0% |
| AGCAAGGAAATTCAAAGAAA+AGG | - | chr5_3:12967170-12967189 | Msa0799690:CDS | 30.0% | |
| AATTCAAAGAAAAGGAGAGA+AGG | - | chr5_3:12967178-12967197 | Msa0799690:CDS | 30.0% | |
| AGGGATAAACAAAGAATCAA+CGG | + | chr5_3:12967375-12967394 | None:intergenic | 30.0% | |
| AGAAAGTAAAGCAACCAATT+TGG | - | chr5_3:12966206-12966225 | Msa0799690:three_prime_UTR | 30.0% | |
| CATGACATATGTTTCTTCAT+GGG | + | chr5_3:12966323-12966342 | None:intergenic | 30.0% | |
| TTGAAGGGAATAGAAATGTT+TGG | - | chr5_3:12966442-12966461 | Msa0799690:intron | 30.0% | |
| TGAAGGGAATAGAAATGTTT+GGG | - | chr5_3:12966443-12966462 | Msa0799690:intron | 30.0% | |
| TGAACTTCAAAACTAAGTTC+CGG | + | chr5_3:12966569-12966588 | None:intergenic | 30.0% | |
| ! | TTTTCGTTTATGTATCCATG+TGG | + | chr5_3:12966639-12966658 | None:intergenic | 30.0% |
| ACTTGCAGTTAAGAAAGAAA+CGG | + | chr5_3:12966947-12966966 | None:intergenic | 30.0% | |
| TTCTTAACTGCAAGTAACTT+TGG | - | chr5_3:12966952-12966971 | Msa0799690:CDS | 30.0% | |
| !! | TTTTCCTTTTTGGGCATTTT+AGG | - | chr5_3:12967129-12967148 | Msa0799690:CDS | 30.0% |
| TTTCTTTGAATTTCCTTGCT+GGG | + | chr5_3:12967170-12967189 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGAATTTCCTTGC+TGG | + | chr5_3:12967171-12967190 | None:intergenic | 30.0% |
| AGCAAGGAAATTCAAAGAAA+AGG | - | chr5_3:12967170-12967189 | Msa0799690:CDS | 30.0% | |
| AATTCAAAGAAAAGGAGAGA+AGG | - | chr5_3:12967178-12967197 | Msa0799690:CDS | 30.0% | |
| AGGGATAAACAAAGAATCAA+CGG | + | chr5_3:12967375-12967394 | None:intergenic | 30.0% | |
| CCATGACATATGTTTCTTCA+TGG | + | chr5_3:12966324-12966343 | None:intergenic | 35.0% | |
| CCATGAAGAAACATATGTCA+TGG | - | chr5_3:12966321-12966340 | Msa0799690:intron | 35.0% | |
| ! | GGAAGTGTAGTGTATCAAAT+TGG | - | chr5_3:12966395-12966414 | Msa0799690:CDS | 35.0% |
| AAACTAAGTTCCGGGATATA+AGG | + | chr5_3:12966560-12966579 | None:intergenic | 35.0% | |
| GAACTTCAAAACTAAGTTCC+GGG | + | chr5_3:12966568-12966587 | None:intergenic | 35.0% | |
| ! | TTTGAAGTTCATGACTTGCA+AGG | - | chr5_3:12966578-12966597 | Msa0799690:intron | 35.0% |
| TTTATGTATCCATGTGGCAT+TGG | + | chr5_3:12966633-12966652 | None:intergenic | 35.0% | |
| CTTGCAGTTAAGAAAGAAAC+GGG | + | chr5_3:12966946-12966965 | None:intergenic | 35.0% | |
| GGTGAATCATATGAGTTTCT+AGG | - | chr5_3:12967024-12967043 | Msa0799690:intron | 35.0% | |
| GAGGCAAAAAACGAACATTT+GGG | + | chr5_3:12967099-12967118 | None:intergenic | 35.0% | |
| TGAGGCAAAAAACGAACATT+TGG | + | chr5_3:12967100-12967119 | None:intergenic | 35.0% | |
| TCAACCTAAAATGCCCAAAA+AGG | + | chr5_3:12967136-12967155 | None:intergenic | 35.0% | |
| TTCTTTGAATTTCCTTGCTG+GGG | + | chr5_3:12967169-12967188 | None:intergenic | 35.0% | |
| CCATGACATATGTTTCTTCA+TGG | + | chr5_3:12966324-12966343 | None:intergenic | 35.0% | |
| CCATGAAGAAACATATGTCA+TGG | - | chr5_3:12966321-12966340 | Msa0799690:intron | 35.0% | |
| ! | GGAAGTGTAGTGTATCAAAT+TGG | - | chr5_3:12966395-12966414 | Msa0799690:CDS | 35.0% |
| AAACTAAGTTCCGGGATATA+AGG | + | chr5_3:12966560-12966579 | None:intergenic | 35.0% | |
| GAACTTCAAAACTAAGTTCC+GGG | + | chr5_3:12966568-12966587 | None:intergenic | 35.0% | |
| ! | TTTGAAGTTCATGACTTGCA+AGG | - | chr5_3:12966578-12966597 | Msa0799690:intron | 35.0% |
| TTTATGTATCCATGTGGCAT+TGG | + | chr5_3:12966633-12966652 | None:intergenic | 35.0% | |
| CTTGCAGTTAAGAAAGAAAC+GGG | + | chr5_3:12966946-12966965 | None:intergenic | 35.0% | |
| GGTGAATCATATGAGTTTCT+AGG | - | chr5_3:12967024-12967043 | Msa0799690:intron | 35.0% | |
| GAGGCAAAAAACGAACATTT+GGG | + | chr5_3:12967099-12967118 | None:intergenic | 35.0% | |
| TGAGGCAAAAAACGAACATT+TGG | + | chr5_3:12967100-12967119 | None:intergenic | 35.0% | |
| TCAACCTAAAATGCCCAAAA+AGG | + | chr5_3:12967136-12967155 | None:intergenic | 35.0% | |
| TTCTTTGAATTTCCTTGCTG+GGG | + | chr5_3:12967169-12967188 | None:intergenic | 35.0% | |
| GTAAAGCAACCAATTTGGTC+AGG | - | chr5_3:12966211-12966230 | Msa0799690:three_prime_UTR | 40.0% | |
| AGGTAACAATGATCACCACA+TGG | + | chr5_3:12966247-12966266 | None:intergenic | 40.0% | |
| GAAGCTCTTGTCTAACTCAA+TGG | - | chr5_3:12966357-12966376 | Msa0799690:intron | 40.0% | |
| CTCTTGTCTAACTCAATGGA+AGG | - | chr5_3:12966361-12966380 | Msa0799690:CDS | 40.0% | |
| ! | TCAATGGAAGGACAAGTTGA+AGG | - | chr5_3:12966373-12966392 | Msa0799690:CDS | 40.0% |
| ! | CAATGGAAGGACAAGTTGAA+GGG | - | chr5_3:12966374-12966393 | Msa0799690:CDS | 40.0% |
| TATGCAGTTGCCTTATATCC+CGG | - | chr5_3:12966547-12966566 | Msa0799690:intron | 40.0% | |
| ACAACATGCAAATTGAGCTC+AGG | - | chr5_3:12967204-12967223 | Msa0799690:exon | 40.0% | |
| CAAATAACTTATGGCCCCAA+AGG | - | chr5_3:12967347-12967366 | Msa0799690:five_prime_UTR | 40.0% | |
| AAAGAATCAACGGCACCTTT+GGG | + | chr5_3:12967365-12967384 | None:intergenic | 40.0% | |
| GTAAAGCAACCAATTTGGTC+AGG | - | chr5_3:12966211-12966230 | Msa0799690:three_prime_UTR | 40.0% | |
| AGGTAACAATGATCACCACA+TGG | + | chr5_3:12966247-12966266 | None:intergenic | 40.0% | |
| GAAGCTCTTGTCTAACTCAA+TGG | - | chr5_3:12966357-12966376 | Msa0799690:intron | 40.0% | |
| CTCTTGTCTAACTCAATGGA+AGG | - | chr5_3:12966361-12966380 | Msa0799690:CDS | 40.0% | |
| ! | TCAATGGAAGGACAAGTTGA+AGG | - | chr5_3:12966373-12966392 | Msa0799690:CDS | 40.0% |
| ! | CAATGGAAGGACAAGTTGAA+GGG | - | chr5_3:12966374-12966393 | Msa0799690:CDS | 40.0% |
| TATGCAGTTGCCTTATATCC+CGG | - | chr5_3:12966547-12966566 | Msa0799690:intron | 40.0% | |
| ACAACATGCAAATTGAGCTC+AGG | - | chr5_3:12967204-12967223 | Msa0799690:exon | 40.0% | |
| CAAATAACTTATGGCCCCAA+AGG | - | chr5_3:12967347-12967366 | Msa0799690:five_prime_UTR | 40.0% | |
| AAAGAATCAACGGCACCTTT+GGG | + | chr5_3:12967365-12967384 | None:intergenic | 40.0% | |
| TCTCTGTCACCTGACCAAAT+TGG | + | chr5_3:12966223-12966242 | None:intergenic | 45.0% | |
| GTTGAAGTTCCAATGCCACA+TGG | - | chr5_3:12966621-12966640 | Msa0799690:intron | 45.0% | |
| ! | AGGAAGTTAATGGGCGAGTA+AGG | - | chr5_3:12966819-12966838 | Msa0799690:intron | 45.0% |
| AAGAATCAACGGCACCTTTG+GGG | + | chr5_3:12967364-12967383 | None:intergenic | 45.0% | |
| CAAAGAATCAACGGCACCTT+TGG | + | chr5_3:12967366-12967385 | None:intergenic | 45.0% | |
| TCTCTGTCACCTGACCAAAT+TGG | + | chr5_3:12966223-12966242 | None:intergenic | 45.0% | |
| GTTGAAGTTCCAATGCCACA+TGG | - | chr5_3:12966621-12966640 | Msa0799690:intron | 45.0% | |
| ! | AGGAAGTTAATGGGCGAGTA+AGG | - | chr5_3:12966819-12966838 | Msa0799690:intron | 45.0% |
| AAGAATCAACGGCACCTTTG+GGG | + | chr5_3:12967364-12967383 | None:intergenic | 45.0% | |
| CAAAGAATCAACGGCACCTT+TGG | + | chr5_3:12967366-12967385 | None:intergenic | 45.0% | |
| !! | TAATTAATTAACTAATTTAA+TGG | - | chr5_3:12966173-12966192 | Msa0799690:three_prime_UTR | 5.0% |
| !! | TAATTAATTAACTAATTTAA+TGG | - | chr5_3:12966173-12966192 | Msa0799690:three_prime_UTR | 5.0% |
| TCAGGTGACAGAGAACCATG+TGG | - | chr5_3:12966229-12966248 | Msa0799690:exon | 50.0% | |
| GAACTCATAGAACCCCAGCA+AGG | - | chr5_3:12967154-12967173 | Msa0799690:CDS | 50.0% | |
| TCAGGTGACAGAGAACCATG+TGG | - | chr5_3:12966229-12966248 | Msa0799690:exon | 50.0% | |
| GAACTCATAGAACCCCAGCA+AGG | - | chr5_3:12967154-12967173 | Msa0799690:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 12966168 | 12967416 | 12966168 | ID=Msa0799690;Name=Msa0799690 |
| chr5_3 | mRNA | 12966168 | 12967416 | 12966168 | ID=Msa0799690-mRNA-1;Parent=Msa0799690;Name=Msa0799690-mRNA-1;_AED=0.34;_eAED=0.34;_QI=208|0.66|0.75|1|1|1|4|63|104 |
| chr5_3 | exon | 12966168 | 12966273 | 12966168 | ID=Msa0799690-mRNA-1:exon:5378;Parent=Msa0799690-mRNA-1 |
| chr5_3 | exon | 12966359 | 12966420 | 12966359 | ID=Msa0799690-mRNA-1:exon:5377;Parent=Msa0799690-mRNA-1 |
| chr5_3 | exon | 12966919 | 12967030 | 12966919 | ID=Msa0799690-mRNA-1:exon:5376;Parent=Msa0799690-mRNA-1 |
| chr5_3 | exon | 12967111 | 12967416 | 12967111 | ID=Msa0799690-mRNA-1:exon:5375;Parent=Msa0799690-mRNA-1 |
| chr5_3 | five_prime_UTR | 12967209 | 12967416 | 12967209 | ID=Msa0799690-mRNA-1:five_prime_utr;Parent=Msa0799690-mRNA-1 |
| chr5_3 | CDS | 12967111 | 12967208 | 12967111 | ID=Msa0799690-mRNA-1:cds;Parent=Msa0799690-mRNA-1 |
| chr5_3 | CDS | 12966919 | 12967030 | 12966919 | ID=Msa0799690-mRNA-1:cds;Parent=Msa0799690-mRNA-1 |
| chr5_3 | CDS | 12966359 | 12966420 | 12966359 | ID=Msa0799690-mRNA-1:cds;Parent=Msa0799690-mRNA-1 |
| chr5_3 | CDS | 12966231 | 12966273 | 12966231 | ID=Msa0799690-mRNA-1:cds;Parent=Msa0799690-mRNA-1 |
| chr5_3 | three_prime_UTR | 12966168 | 12966230 | 12966168 | ID=Msa0799690-mRNA-1:three_prime_utr;Parent=Msa0799690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
