Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718690 | XP_003612480.2 | 98.288 | 292 | 5 | 0 | 1 | 292 | 347 | 638 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718690 | sp|Q9C6W5|AB14G_ARATH | 82.857 | 280 | 47 | 1 | 13 | 292 | 368 | 646 | 3.44e-167 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718690 | G7K406 | 98.288 | 292 | 5 | 0 | 1 | 292 | 347 | 638 | 0.0 | 601 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0718690 | 0.800464 | 1.423746e-48 | -8.615850e-47 |
| Msa0657660 | Msa0718690 | 0.800438 | 1.441520e-48 | -8.615850e-47 |
| Msa0718690 | Msa0751260 | 0.804479 | 2.118307e-49 | -8.615850e-47 |
| Msa0718690 | Msa0759820 | 0.886720 | 2.674745e-72 | -8.615850e-47 |
| Msa0718690 | Msa0795070 | 0.804375 | 2.226888e-49 | -8.615850e-47 |
| Msa0718690 | Msa0823080 | 0.824142 | 9.474930e-54 | -8.615850e-47 |
| Msa0718690 | Msa0937020 | 0.813381 | 2.634526e-51 | -8.615850e-47 |
| Msa0718690 | Msa0984690 | 0.803810 | 2.918519e-49 | -8.615850e-47 |
| Msa0718690 | Msa1418240 | 0.830000 | 3.757740e-55 | -8.615850e-47 |
| Msa0718690 | Msa1453360 | 0.809769 | 1.606491e-50 | -8.615850e-47 |
| Msa0187030 | Msa0718690 | 0.814152 | 1.782111e-51 | -8.615850e-47 |
| Msa0485240 | Msa0718690 | 0.818304 | 2.101796e-52 | -8.615850e-47 |
| Msa0579660 | Msa0718690 | 0.818283 | 2.125101e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718690 | MtrunA17_Chr5g0408061 | 98.288 | 292 | 5 | 0 | 1 | 292 | 347 | 638 | 0.0 | 601 |
| Msa0718690 | MtrunA17_Chr1g0198931 | 64.493 | 276 | 98 | 0 | 15 | 290 | 402 | 677 | 1.01e-126 | 376 |
| Msa0718690 | MtrunA17_Chr8g0359931 | 53.309 | 272 | 123 | 2 | 23 | 291 | 357 | 627 | 1.61e-95 | 294 |
| Msa0718690 | MtrunA17_Chr1g0200651 | 46.906 | 307 | 137 | 3 | 9 | 292 | 365 | 668 | 9.25e-92 | 285 |
| Msa0718690 | MtrunA17_Chr1g0176441 | 47.253 | 273 | 126 | 2 | 23 | 292 | 483 | 740 | 1.13e-85 | 271 |
| Msa0718690 | MtrunA17_Chr1g0176451 | 45.421 | 273 | 131 | 2 | 23 | 292 | 328 | 585 | 5.44e-84 | 263 |
| Msa0718690 | MtrunA17_Chr2g0318071 | 53.604 | 222 | 100 | 2 | 72 | 291 | 13 | 233 | 4.35e-82 | 247 |
| Msa0718690 | MtrunA17_Chr7g0267971 | 50.000 | 270 | 117 | 2 | 23 | 289 | 472 | 726 | 5.76e-78 | 251 |
| Msa0718690 | MtrunA17_Chr3g0102731 | 41.361 | 191 | 109 | 1 | 22 | 209 | 397 | 587 | 6.51e-38 | 141 |
| Msa0718690 | MtrunA17_Chr5g0446901 | 36.866 | 217 | 129 | 2 | 1 | 209 | 386 | 602 | 6.96e-37 | 138 |
| Msa0718690 | MtrunA17_Chr1g0208391 | 27.273 | 231 | 158 | 4 | 28 | 248 | 393 | 623 | 1.08e-23 | 100 |
| Msa0718690 | MtrunA17_Chr4g0065231 | 29.767 | 215 | 145 | 3 | 82 | 290 | 422 | 636 | 1.95e-17 | 82.4 |
| Msa0718690 | MtrunA17_Chr2g0316301 | 25.301 | 249 | 172 | 6 | 52 | 288 | 381 | 627 | 3.46e-17 | 81.6 |
| Msa0718690 | MtrunA17_Chr3g0102741 | 41.860 | 86 | 49 | 1 | 206 | 290 | 2 | 87 | 1.17e-14 | 68.2 |
| Msa0718690 | MtrunA17_Chr2g0318061 | 41.558 | 77 | 45 | 0 | 2 | 78 | 300 | 376 | 8.29e-14 | 70.9 |
| Msa0718690 | MtrunA17_Chr1g0213091 | 25.551 | 227 | 160 | 4 | 24 | 246 | 442 | 663 | 3.09e-13 | 70.1 |
| Msa0718690 | MtrunA17_Chr3g0130331 | 30.357 | 224 | 140 | 8 | 76 | 289 | 417 | 634 | 5.74e-13 | 68.9 |
| Msa0718690 | MtrunA17_Chr7g0263351 | 26.697 | 221 | 155 | 4 | 24 | 240 | 437 | 654 | 2.44e-12 | 67.4 |
| Msa0718690 | MtrunA17_Chr8g0384391 | 26.818 | 220 | 153 | 5 | 76 | 289 | 417 | 634 | 1.14e-11 | 65.1 |
| Msa0718690 | MtrunA17_Chr1g0202431 | 28.019 | 207 | 126 | 5 | 101 | 291 | 406 | 605 | 2.75e-11 | 63.9 |
| Msa0718690 | MtrunA17_Chr5g0446911 | 38.667 | 75 | 45 | 1 | 217 | 290 | 3 | 77 | 6.18e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718690 | AT1G31770.1 | 82.857 | 280 | 47 | 1 | 13 | 292 | 368 | 646 | 3.50e-168 | 481 |
| Msa0718690 | AT3G25620.2 | 60.627 | 287 | 113 | 0 | 5 | 291 | 386 | 672 | 1.11e-114 | 345 |
| Msa0718690 | AT4G27420.1 | 54.244 | 271 | 122 | 2 | 23 | 291 | 362 | 632 | 1.32e-90 | 282 |
| Msa0718690 | AT5G06530.2 | 47.603 | 292 | 128 | 5 | 6 | 292 | 477 | 748 | 1.52e-88 | 279 |
| Msa0718690 | AT5G06530.1 | 47.603 | 292 | 128 | 5 | 6 | 292 | 477 | 748 | 1.52e-88 | 279 |
| Msa0718690 | AT1G71960.1 | 43.831 | 308 | 154 | 6 | 1 | 292 | 357 | 661 | 2.88e-81 | 258 |
| Msa0718690 | AT5G06530.4 | 50.691 | 217 | 99 | 3 | 6 | 218 | 282 | 494 | 4.80e-71 | 228 |
| Msa0718690 | AT5G06530.3 | 50.691 | 217 | 99 | 3 | 6 | 218 | 477 | 689 | 2.08e-69 | 228 |
| Msa0718690 | AT3G13220.1 | 37.542 | 301 | 174 | 3 | 4 | 290 | 378 | 678 | 4.42e-60 | 202 |
| Msa0718690 | AT2G01320.8 | 26.908 | 249 | 167 | 5 | 15 | 248 | 372 | 620 | 2.22e-25 | 106 |
| Msa0718690 | AT2G01320.5 | 26.908 | 249 | 167 | 5 | 15 | 248 | 372 | 620 | 2.22e-25 | 106 |
| Msa0718690 | AT2G01320.1 | 26.908 | 249 | 167 | 5 | 15 | 248 | 372 | 620 | 2.87e-25 | 105 |
| Msa0718690 | AT2G01320.4 | 26.908 | 249 | 167 | 5 | 15 | 248 | 372 | 620 | 2.87e-25 | 105 |
| Msa0718690 | AT2G01320.3 | 26.908 | 249 | 167 | 5 | 15 | 248 | 372 | 620 | 3.29e-25 | 105 |
| Msa0718690 | AT2G01320.2 | 26.908 | 249 | 167 | 5 | 15 | 248 | 372 | 620 | 3.32e-25 | 105 |
| Msa0718690 | AT3G25620.1 | 50.685 | 73 | 36 | 0 | 6 | 78 | 387 | 459 | 3.57e-19 | 87.4 |
| Msa0718690 | AT2G01320.7 | 31.973 | 147 | 92 | 3 | 15 | 153 | 372 | 518 | 2.23e-17 | 82.4 |
| Msa0718690 | AT2G01320.6 | 31.973 | 147 | 92 | 3 | 15 | 153 | 372 | 518 | 2.23e-17 | 82.4 |
| Msa0718690 | AT3G55090.1 | 26.667 | 225 | 159 | 4 | 24 | 244 | 424 | 646 | 8.50e-15 | 75.1 |
| Msa0718690 | AT2G13610.1 | 29.032 | 248 | 161 | 9 | 52 | 289 | 394 | 636 | 1.50e-14 | 74.3 |
| Msa0718690 | AT5G13580.1 | 26.872 | 227 | 156 | 6 | 24 | 244 | 415 | 637 | 6.71e-14 | 72.4 |
| Msa0718690 | AT5G19410.1 | 29.545 | 220 | 138 | 7 | 82 | 290 | 404 | 617 | 2.28e-13 | 70.5 |
| Msa0718690 | AT5G19410.2 | 29.545 | 220 | 138 | 7 | 82 | 290 | 413 | 626 | 2.36e-13 | 70.5 |
| Msa0718690 | AT1G53270.1 | 24.542 | 273 | 185 | 6 | 22 | 288 | 324 | 581 | 1.16e-11 | 65.5 |
| Msa0718690 | AT3G53480.1 | 24.554 | 224 | 159 | 5 | 24 | 238 | 1169 | 1391 | 1.75e-11 | 65.1 |
| Msa0718690 | AT5G52860.1 | 27.861 | 201 | 135 | 4 | 101 | 291 | 384 | 584 | 4.96e-11 | 63.5 |
| Msa0718690 | AT2G37360.1 | 24.576 | 236 | 167 | 5 | 7 | 238 | 430 | 658 | 5.46e-11 | 63.5 |
| Msa0718690 | AT2G39350.1 | 25.403 | 248 | 162 | 5 | 24 | 253 | 428 | 670 | 5.99e-11 | 63.5 |
Find 133 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTATCCCATAACTTTAA+AGG | 0.234587 | 5_1:+13005636 | Msa0718690:five_prime_UTR |
| ACATTAAGGTGTTAATTTAA+AGG | 0.235669 | 5_1:+13005398 | None:intergenic |
| TACTGTTACAAGCTTCTTCT+TGG | 0.256746 | 5_1:+13007754 | Msa0718690:CDS |
| AGAGTACTATTAAAGTATTC+TGG | 0.267034 | 5_1:-13005542 | None:intergenic |
| TAAATTACCTTTAAAGTTAT+GGG | 0.286641 | 5_1:-13005643 | None:intergenic |
| TTAAATTACCTTTAAAGTTA+TGG | 0.291319 | 5_1:-13005644 | None:intergenic |
| TTGCTTGATGAACCTACTTC+TGG | 0.304413 | 5_1:+13006227 | Msa0718690:five_prime_UTR |
| ATTCAGTATAGTCTTCTCTT+TGG | 0.312969 | 5_1:-13005780 | None:intergenic |
| TACTATTACAAAGGGGAGTT+AGG | 0.327734 | 5_1:+13007083 | Msa0718690:CDS |
| ATGGGATACATAATGAGTTT+TGG | 0.330190 | 5_1:-13005625 | None:intergenic |
| CAGCTTGTACACCATTGTTC+TGG | 0.330617 | 5_1:-13007043 | None:intergenic |
| TCTATAACCAACCAACATTA+AGG | 0.331212 | 5_1:-13007899 | None:intergenic |
| CATTTGTCATCATACTCTAT+TGG | 0.331451 | 5_1:+13007497 | Msa0718690:CDS |
| GGAGAAATACTAGCTATGTT+AGG | 0.332358 | 5_1:+13005827 | Msa0718690:five_prime_UTR |
| TGATGAACCTACTTCTGGTT+TGG | 0.332359 | 5_1:+13006232 | Msa0718690:five_prime_UTR |
| CAAAGTCTTGGATTAGCATT+TGG | 0.334282 | 5_1:+13007595 | Msa0718690:CDS |
| CAGCATCACACCTTGAAGAT+AGG | 0.335401 | 5_1:+13007194 | Msa0718690:CDS |
| CTATTAAAGTATTCTGGTTT+GGG | 0.335899 | 5_1:-13005536 | None:intergenic |
| GTGTATGCAGTTTGAGGATT+TGG | 0.336075 | 5_1:+13005738 | Msa0718690:intron |
| GAAGGGTGTCCTATATATTA+TGG | 0.342710 | 5_1:+13006386 | Msa0718690:five_prime_UTR |
| CTTTCCTTCAATTAAATCAA+TGG | 0.342914 | 5_1:+13007840 | Msa0718690:CDS |
| ACTATTAAAGTATTCTGGTT+TGG | 0.346781 | 5_1:-13005537 | None:intergenic |
| AATCCCATTGATTTAATTGA+AGG | 0.350522 | 5_1:-13007844 | None:intergenic |
| GAGAGAGTGATTTCTGAGTT+AGG | 0.351143 | 5_1:+13006089 | Msa0718690:five_prime_UTR |
| CACTTCTGTGACTGTTAATC+CGG | 0.363889 | 5_1:+13006454 | Msa0718690:five_prime_UTR |
| AAAACTCTTTATGACATAGT+TGG | 0.370928 | 5_1:+13008117 | Msa0718690:three_prime_UTR |
| GTTGTTGTCTCTCAAAGTCT+TGG | 0.379781 | 5_1:+13007583 | Msa0718690:CDS |
| TATTTCTTACCCTATCTTCA+AGG | 0.397907 | 5_1:-13007204 | None:intergenic |
| TGTGAGAGAATCTCTAATTT+CGG | 0.398940 | 5_1:+13006800 | Msa0718690:five_prime_UTR |
| TTTCCTTCAATTAAATCAAT+GGG | 0.417483 | 5_1:+13007841 | Msa0718690:CDS |
| TCTTTATGACATAGTTGGAT+TGG | 0.418880 | 5_1:+13008122 | Msa0718690:three_prime_UTR |
| TACAACAATCAACCTTTCTC+AGG | 0.419549 | 5_1:+13005928 | Msa0718690:five_prime_UTR |
| ATTTAGCACTTCGTAGGGTT+AGG | 0.423770 | 5_1:+13007932 | Msa0718690:CDS |
| ATTAGCATTCTTCTTTCTTG+TGG | 0.424376 | 5_1:-13007382 | None:intergenic |
| TGCAGTGAACACTAGTGTTT+CGG | 0.426036 | 5_1:-13006015 | None:intergenic |
| CGTCTCAACGGCAAACTAAC+CGG | 0.432406 | 5_1:+13005895 | Msa0718690:five_prime_UTR |
| AGGATGAAAGTGACAGGATC+AGG | 0.436425 | 5_1:-13007535 | None:intergenic |
| GAAGCAGGACCATAATATAT+AGG | 0.438438 | 5_1:-13006395 | None:intergenic |
| GATTACTATGAATGTTCAAA+GGG | 0.439093 | 5_1:+13007796 | Msa0718690:CDS |
| AGTTAGGACTAAATAATTGT+AGG | 0.441064 | 5_1:+13006105 | Msa0718690:five_prime_UTR |
| CTAGCTATGTTAGGGCCATC+AGG | 0.443295 | 5_1:+13005836 | Msa0718690:five_prime_UTR |
| AATTGTAGGAATAGTATGAT+TGG | 0.443895 | 5_1:+13006119 | Msa0718690:five_prime_UTR |
| AGGTTCAATAAAAGAAGAAC+AGG | 0.454084 | 5_1:+13005948 | Msa0718690:five_prime_UTR |
| CTTGAATACTTCTCATCTGT+CGG | 0.455038 | 5_1:+13006425 | Msa0718690:five_prime_UTR |
| ACTTTAATAGTACTCTCTCT+TGG | 0.455321 | 5_1:+13005549 | Msa0718690:five_prime_UTR |
| ACTCTACTATATGTTTGATA+AGG | 0.455856 | 5_1:+13006349 | Msa0718690:five_prime_UTR |
| TACTGAACAAAGTGAGGCCT+TGG | 0.457712 | 5_1:+13006761 | Msa0718690:five_prime_UTR |
| ATCATGGCCTTAATGTTGGT+TGG | 0.459649 | 5_1:+13007892 | Msa0718690:CDS |
| TTCAGTACATGCTTAGAGTC+CGG | 0.463157 | 5_1:-13006745 | None:intergenic |
| TTGCTTATTTAGCACTTCGT+AGG | 0.468673 | 5_1:+13007926 | Msa0718690:CDS |
| GAAGGCATGAAGCATTCAAT+AGG | 0.472083 | 5_1:+13007110 | Msa0718690:CDS |
| GAGAAATACTAGCTATGTTA+GGG | 0.474610 | 5_1:+13005828 | Msa0718690:five_prime_UTR |
| TCATCAAGCAACAAAAGGCT+TGG | 0.475360 | 5_1:-13006215 | None:intergenic |
| ATTCACTGTACTATTACAAA+GGG | 0.476810 | 5_1:+13007075 | Msa0718690:CDS |
| TACTTTCTAGCAAGAACAAT+AGG | 0.477176 | 5_1:+13007442 | Msa0718690:CDS |
| TGCTTATTTAGCACTTCGTA+GGG | 0.478947 | 5_1:+13007927 | Msa0718690:CDS |
| CTAATCAAGGAACGATCCTC+GGG | 0.479981 | 5_1:+13007400 | Msa0718690:CDS |
| TGTCATCATACTCTATTGGA+TGG | 0.482102 | 5_1:+13007501 | Msa0718690:CDS |
| GACGGCCTCCGAGTGCTGTT+AGG | 0.487387 | 5_1:-13005876 | None:intergenic |
| CTATCTTCAAGGTGTGATGC+TGG | 0.488666 | 5_1:-13007193 | None:intergenic |
| GCTAATCAAGGAACGATCCT+CGG | 0.492988 | 5_1:+13007399 | Msa0718690:CDS |
| CAATGGGATTGAATCATATG+TGG | 0.495491 | 5_1:+13007857 | Msa0718690:CDS |
| GTGAAAACTGCATTGTAGAG+AGG | 0.498581 | 5_1:-13007355 | None:intergenic |
| AGTGCTGTTAGGAGTGTGTT+TGG | 0.499765 | 5_1:-13005865 | None:intergenic |
| AGAAAGAAGAATGCTAATCA+AGG | 0.506775 | 5_1:+13007387 | Msa0718690:CDS |
| TAGGTTCATCAAGCAACAAA+AGG | 0.508214 | 5_1:-13006220 | None:intergenic |
| ATCACAGGTGTGGTGTGTCC+AGG | 0.511445 | 5_1:+13005806 | Msa0718690:five_prime_UTR |
| TATTAGTATTATTCCTCAGA+TGG | 0.514025 | 5_1:-13008027 | None:intergenic |
| TATTCAAGAGCAGTTGAAGC+AGG | 0.517791 | 5_1:-13006410 | None:intergenic |
| CGGTTAGTTTGCCGTTGAGA+CGG | 0.517963 | 5_1:-13005894 | None:intergenic |
| GAACACTAGTGTTTCGGCTA+CGG | 0.518484 | 5_1:-13006009 | None:intergenic |
| AATTCACTGTACTATTACAA+AGG | 0.520164 | 5_1:+13007074 | Msa0718690:CDS |
| CATCTCCATGCTAGAAACTT+CGG | 0.520198 | 5_1:-13006856 | None:intergenic |
| ATATAGTAGAGTCTACTTGA+AGG | 0.521606 | 5_1:-13006338 | None:intergenic |
| TGTGTTTGGCCACTGCCTGA+TGG | 0.521952 | 5_1:-13005851 | None:intergenic |
| TTCTAGCTGGACTATTGTGG+TGG | 0.524266 | 5_1:+13007164 | Msa0718690:CDS |
| AGTGAAAGGATGAAAGTGAC+AGG | 0.525533 | 5_1:-13007541 | None:intergenic |
| ACTATTACAAAGGGGAGTTA+GGG | 0.528424 | 5_1:+13007084 | Msa0718690:CDS |
| TGTTCATTGTTTGAGCTATG+AGG | 0.528687 | 5_1:-13005595 | None:intergenic |
| GAAAGGTTGATTGTTGTAAG+TGG | 0.531637 | 5_1:-13005923 | None:intergenic |
| AGCATCACACCTTGAAGATA+GGG | 0.535774 | 5_1:+13007195 | Msa0718690:CDS |
| AACATAGCTAGTATTTCTCC+TGG | 0.538576 | 5_1:-13005824 | None:intergenic |
| TGATTACTATGAATGTTCAA+AGG | 0.538612 | 5_1:+13007795 | Msa0718690:CDS |
| AGATCAAGCAAGAGATCAGC+CGG | 0.543869 | 5_1:-13006473 | None:intergenic |
| AAAGGGGAGTTAGGGAAAGA+AGG | 0.547202 | 5_1:+13007092 | Msa0718690:CDS |
| TTGACATAAGTTGTGATATG+AGG | 0.555713 | 5_1:-13005454 | None:intergenic |
| TAATAGTACTCTCTCTTGGA+AGG | 0.556030 | 5_1:+13005553 | Msa0718690:five_prime_UTR |
| GTCATCATACTCTATTGGAT+GGG | 0.557903 | 5_1:+13007502 | Msa0718690:CDS |
| AGTCTTCCGCTCATGTTCCA+AGG | 0.561416 | 5_1:-13006778 | None:intergenic |
| AAAGAGAAGACTATACTGAA+TGG | 0.564159 | 5_1:+13005782 | Msa0718690:five_prime_UTR |
| AAATTCCACCTTTCATAGTG+TGG | 0.564354 | 5_1:+13007707 | Msa0718690:CDS |
| TGAAAACTGCATTGTAGAGA+GGG | 0.565315 | 5_1:-13007354 | None:intergenic |
| GTTCATCATGGCCTTAATGT+TGG | 0.566794 | 5_1:+13007888 | Msa0718690:CDS |
| TACTTAAGCCACACTATGAA+AGG | 0.567960 | 5_1:-13007715 | None:intergenic |
| CTCTTGCTTGATCTTGCCAA+TGG | 0.569116 | 5_1:+13006482 | Msa0718690:five_prime_UTR |
| CAGAACAATGGTGTACAAGC+TGG | 0.573342 | 5_1:+13007044 | Msa0718690:CDS |
| ATGTTAGGGCCATCAGGCAG+TGG | 0.573922 | 5_1:+13005842 | Msa0718690:five_prime_UTR |
| CCTGATATACCTCTCAAAAG+TGG | 0.575589 | 5_1:-13006146 | None:intergenic |
| GTTGGTAGTGCTAGCTCAAG+TGG | 0.579856 | 5_1:-13007472 | None:intergenic |
| GGTAAATCTAAAGTGTGGCA+TGG | 0.580877 | 5_1:+13007953 | Msa0718690:exon |
| GAAAAGCTACACTTATGACT+TGG | 0.581698 | 5_1:-13007144 | None:intergenic |
| ACTATACTGAATGGTATCAC+AGG | 0.582243 | 5_1:+13005791 | Msa0718690:five_prime_UTR |
| AACACACTCCTAACAGCACT+CGG | 0.583473 | 5_1:+13005868 | Msa0718690:five_prime_UTR |
| ATCAAATAAATCCAGAACAA+TGG | 0.586602 | 5_1:+13007032 | Msa0718690:CDS |
| ATCATACTCTATTGGATGGG+AGG | 0.587856 | 5_1:+13007505 | Msa0718690:CDS |
| AAAGAACAACAAGAAGTGAA+AGG | 0.589001 | 5_1:-13007555 | None:intergenic |
| GTAGAATCCAAACCAGAAGT+AGG | 0.591277 | 5_1:-13006239 | None:intergenic |
| TGTAGGAATAGTATGATTGG+AGG | 0.594584 | 5_1:+13006122 | Msa0718690:five_prime_UTR |
| AAGGTTGTGTTGCTATCTGA+AGG | 0.596165 | 5_1:+13006368 | Msa0718690:five_prime_UTR |
| GCACTCGGAGGCCGTCTCAA+CGG | 0.597321 | 5_1:+13005883 | Msa0718690:five_prime_UTR |
| GAAAATTGCAGGTATTGCAC+CGG | 0.598624 | 5_1:+13006726 | Msa0718690:intron |
| AAAAGCCGAAGTTTCTAGCA+TGG | 0.600571 | 5_1:+13006851 | Msa0718690:exon |
| GTTTCGGCTACGGTTAAGTG+AGG | 0.610989 | 5_1:-13005999 | None:intergenic |
| CGGATTAACAGTCACAGAAG+TGG | 0.616589 | 5_1:-13006453 | None:intergenic |
| GTGGGTTGATGTGTTCATCA+TGG | 0.619247 | 5_1:+13007876 | Msa0718690:CDS |
| TTAAGCCACACTATGAAAGG+TGG | 0.623345 | 5_1:-13007712 | None:intergenic |
| AGCATGTACTGAACAAAGTG+AGG | 0.633089 | 5_1:+13006755 | Msa0718690:five_prime_UTR |
| CTAGAAAGTACGATGAAAGA+CGG | 0.635730 | 5_1:-13007429 | None:intergenic |
| GTTCAAGATTCTCAAAGCAG+TGG | 0.654325 | 5_1:-13006261 | None:intergenic |
| AATGGGATTGAATCATATGT+GGG | 0.660699 | 5_1:+13007858 | Msa0718690:CDS |
| GGTTAGGTAAATCTAAAGTG+TGG | 0.666396 | 5_1:+13007948 | Msa0718690:exon |
| GTGAGGCCTTGGAACATGAG+CGG | 0.672192 | 5_1:+13006772 | Msa0718690:five_prime_UTR |
| TTTCGGCTACGGTTAAGTGA+GGG | 0.674711 | 5_1:-13005998 | None:intergenic |
| AACAATGGTGTACAAGCTGG+TGG | 0.679106 | 5_1:+13007047 | Msa0718690:CDS |
| ATTACTATGAATGTTCAAAG+GGG | 0.692671 | 5_1:+13007797 | Msa0718690:CDS |
| AGGTTGTGTTGCTATCTGAA+GGG | 0.694060 | 5_1:+13006369 | Msa0718690:five_prime_UTR |
| AGTATGATGACAAATGCTGT+TGG | 0.697699 | 5_1:-13007490 | None:intergenic |
| TGAAAGACGGTACATTCCCG+AGG | 0.707637 | 5_1:-13007416 | None:intergenic |
| TTACTATGAATGTTCAAAGG+GGG | 0.709239 | 5_1:+13007798 | Msa0718690:CDS |
| ACTGAATGGTATCACAGGTG+TGG | 0.721723 | 5_1:+13005796 | Msa0718690:five_prime_UTR |
| TTCACTGTACTATTACAAAG+GGG | 0.728351 | 5_1:+13007076 | Msa0718690:CDS |
| CTATGAGGATCACTCATGTG+TGG | 0.730578 | 5_1:-13005580 | None:intergenic |
| ACACTCCTAACAGCACTCGG+AGG | 0.754668 | 5_1:+13005871 | Msa0718690:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTACCTTTAAAGTTAT+GGG | - | chr5_1:13005646-13005665 | None:intergenic | 15.0% |
| !!! | TTAAATTACCTTTAAAGTTA+TGG | - | chr5_1:13005647-13005666 | None:intergenic | 15.0% |
| !! | TAAAAATTGATTATTACCAT+TGG | - | chr5_1:13006501-13006520 | None:intergenic | 15.0% |
| !! | TACTCAAATGAAAAAATATT+CGG | + | chr5_1:13006655-13006674 | Msa0718690:intron | 15.0% |
| !!! | TTTTCTTAATAAATTAATGC+AGG | + | chr5_1:13007007-13007026 | Msa0718690:intron | 15.0% |
| !! | TTTCTTAATAAATTAATGCA+GGG | + | chr5_1:13007008-13007027 | Msa0718690:intron | 15.0% |
| !!! | ACTCATTATTTGTTCTATTT+TGG | + | chr5_1:13005716-13005735 | Msa0718690:intron | 20.0% |
| !!! | AACTTTTTCATCTTTTGTTA+AGG | - | chr5_1:13006060-13006079 | None:intergenic | 20.0% |
| !!! | AAATAATCTCTTCATCTTTT+CGG | + | chr5_1:13007226-13007245 | Msa0718690:intron | 20.0% |
| !! | TTTCCTTCAATTAAATCAAT+GGG | + | chr5_1:13007841-13007860 | Msa0718690:CDS | 20.0% |
| !!! | CTATTAAAGTATTCTGGTTT+GGG | - | chr5_1:13005539-13005558 | None:intergenic | 25.0% |
| !! | ACTATTAAAGTATTCTGGTT+TGG | - | chr5_1:13005540-13005559 | None:intergenic | 25.0% |
| !! | AGAGTACTATTAAAGTATTC+TGG | - | chr5_1:13005545-13005564 | None:intergenic | 25.0% |
| ! | TATGTATCCCATAACTTTAA+AGG | + | chr5_1:13005636-13005655 | Msa0718690:five_prime_UTR | 25.0% |
| !! | TCATCTTTTGTTAAGGTTTT+AGG | - | chr5_1:13006053-13006072 | None:intergenic | 25.0% |
| ! | AGTTAGGACTAAATAATTGT+AGG | + | chr5_1:13006105-13006124 | Msa0718690:five_prime_UTR | 25.0% |
| ! | AATTGTAGGAATAGTATGAT+TGG | + | chr5_1:13006119-13006138 | Msa0718690:five_prime_UTR | 25.0% |
| ! | ACTCTACTATATGTTTGATA+AGG | + | chr5_1:13006349-13006368 | Msa0718690:five_prime_UTR | 25.0% |
| ! | TGTTCATGTTCTATCTTTAT+AGG | + | chr5_1:13006921-13006940 | Msa0718690:intron | 25.0% |
| !! | CAAAAGGGTAATTTTTCTTT+TGG | - | chr5_1:13006956-13006975 | None:intergenic | 25.0% |
| !! | CAAAAGAAAAATTACCCTTT+TGG | + | chr5_1:13006954-13006973 | Msa0718690:intron | 25.0% |
| ! | ACAAAAAGTAGTAACCAAAA+GGG | - | chr5_1:13006971-13006990 | None:intergenic | 25.0% |
| ! | AACAAAAAGTAGTAACCAAA+AGG | - | chr5_1:13006972-13006991 | None:intergenic | 25.0% |
| ! | ATCAAATAAATCCAGAACAA+TGG | + | chr5_1:13007032-13007051 | Msa0718690:CDS | 25.0% |
| ! | AATTCACTGTACTATTACAA+AGG | + | chr5_1:13007074-13007093 | Msa0718690:CDS | 25.0% |
| ! | ATTCACTGTACTATTACAAA+GGG | + | chr5_1:13007075-13007094 | Msa0718690:CDS | 25.0% |
| !!! | TATTTTTCTTTGCTGTTTTC+TGG | + | chr5_1:13007323-13007342 | Msa0718690:CDS | 25.0% |
| !!! | ATTTTTCTTTGCTGTTTTCT+GGG | + | chr5_1:13007324-13007343 | Msa0718690:CDS | 25.0% |
| ! | TGATTACTATGAATGTTCAA+AGG | + | chr5_1:13007795-13007814 | Msa0718690:CDS | 25.0% |
| ! | GATTACTATGAATGTTCAAA+GGG | + | chr5_1:13007796-13007815 | Msa0718690:CDS | 25.0% |
| ! | ATTACTATGAATGTTCAAAG+GGG | + | chr5_1:13007797-13007816 | Msa0718690:CDS | 25.0% |
| ! | CTTTCCTTCAATTAAATCAA+TGG | + | chr5_1:13007840-13007859 | Msa0718690:CDS | 25.0% |
| !!! | AATCCCATTGATTTAATTGA+AGG | - | chr5_1:13007847-13007866 | None:intergenic | 25.0% |
| ! | TATTAGTATTATTCCTCAGA+TGG | - | chr5_1:13008030-13008049 | None:intergenic | 25.0% |
| ! | AAAACTCTTTATGACATAGT+TGG | + | chr5_1:13008117-13008136 | Msa0718690:three_prime_UTR | 25.0% |
| TTGACATAAGTTGTGATATG+AGG | - | chr5_1:13005457-13005476 | None:intergenic | 30.0% | |
| ACTTTAATAGTACTCTCTCT+TGG | + | chr5_1:13005549-13005568 | Msa0718690:five_prime_UTR | 30.0% | |
| ! | ATGGGATACATAATGAGTTT+TGG | - | chr5_1:13005628-13005647 | None:intergenic | 30.0% |
| ATTCAGTATAGTCTTCTCTT+TGG | - | chr5_1:13005783-13005802 | None:intergenic | 30.0% | |
| AAAGAGAAGACTATACTGAA+TGG | + | chr5_1:13005782-13005801 | Msa0718690:five_prime_UTR | 30.0% | |
| GAGAAATACTAGCTATGTTA+GGG | + | chr5_1:13005828-13005847 | Msa0718690:five_prime_UTR | 30.0% | |
| ! | ATTGTTGTAAGTGGTTTTTC+CGG | - | chr5_1:13005917-13005936 | None:intergenic | 30.0% |
| ! | TCTTTTATTGAACCTGAGAA+AGG | - | chr5_1:13005943-13005962 | None:intergenic | 30.0% |
| AGGTTCAATAAAAGAAGAAC+AGG | + | chr5_1:13005948-13005967 | Msa0718690:five_prime_UTR | 30.0% | |
| !! | ACTATCAAAAAACTTGCTAG+TGG | + | chr5_1:13006284-13006303 | Msa0718690:five_prime_UTR | 30.0% |
| ATATAGTAGAGTCTACTTGA+AGG | - | chr5_1:13006341-13006360 | None:intergenic | 30.0% | |
| AAGGACAAAATTTAATCCCT+CGG | - | chr5_1:13006572-13006591 | None:intergenic | 30.0% | |
| CTAACAATGTCATGACAAAA+TGG | + | chr5_1:13006704-13006723 | Msa0718690:intron | 30.0% | |
| ATGACAAAATGGAAAATTGC+AGG | + | chr5_1:13006715-13006734 | Msa0718690:intron | 30.0% | |
| TGTGAGAGAATCTCTAATTT+CGG | + | chr5_1:13006800-13006819 | Msa0718690:five_prime_UTR | 30.0% | |
| ATGACAAAAACATAGCTACA+AGG | + | chr5_1:13006826-13006845 | Msa0718690:five_prime_UTR | 30.0% | |
| TTCACTGTACTATTACAAAG+GGG | + | chr5_1:13007076-13007095 | Msa0718690:CDS | 30.0% | |
| TATTTCTTACCCTATCTTCA+AGG | - | chr5_1:13007207-13007226 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTTGCTGTTTTCTG+GGG | + | chr5_1:13007325-13007344 | Msa0718690:CDS | 30.0% |
| ATTAGCATTCTTCTTTCTTG+TGG | - | chr5_1:13007385-13007404 | None:intergenic | 30.0% | |
| AGAAAGAAGAATGCTAATCA+AGG | + | chr5_1:13007387-13007406 | Msa0718690:CDS | 30.0% | |
| ! | TACTTTCTAGCAAGAACAAT+AGG | + | chr5_1:13007442-13007461 | Msa0718690:CDS | 30.0% |
| CATTTGTCATCATACTCTAT+TGG | + | chr5_1:13007497-13007516 | Msa0718690:CDS | 30.0% | |
| AAAGAACAACAAGAAGTGAA+AGG | - | chr5_1:13007558-13007577 | None:intergenic | 30.0% | |
| TTACTATGAATGTTCAAAGG+GGG | + | chr5_1:13007798-13007817 | Msa0718690:CDS | 30.0% | |
| AATGGGATTGAATCATATGT+GGG | + | chr5_1:13007858-13007877 | Msa0718690:CDS | 30.0% | |
| TCTATAACCAACCAACATTA+AGG | - | chr5_1:13007902-13007921 | None:intergenic | 30.0% | |
| ! | TTTTGTACTAATTCCATCTG+AGG | + | chr5_1:13008014-13008033 | Msa0718690:three_prime_UTR | 30.0% |
| TAATAGTACTCTCTCTTGGA+AGG | + | chr5_1:13005553-13005572 | Msa0718690:five_prime_UTR | 35.0% | |
| TGTTCATTGTTTGAGCTATG+AGG | - | chr5_1:13005598-13005617 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGTATGCAGTTTG+AGG | + | chr5_1:13005732-13005751 | Msa0718690:intron | 35.0% |
| ACTATACTGAATGGTATCAC+AGG | + | chr5_1:13005791-13005810 | Msa0718690:five_prime_UTR | 35.0% | |
| AACATAGCTAGTATTTCTCC+TGG | - | chr5_1:13005827-13005846 | None:intergenic | 35.0% | |
| GGAGAAATACTAGCTATGTT+AGG | + | chr5_1:13005827-13005846 | Msa0718690:five_prime_UTR | 35.0% | |
| ! | GAAAGGTTGATTGTTGTAAG+TGG | - | chr5_1:13005926-13005945 | None:intergenic | 35.0% |
| TACAACAATCAACCTTTCTC+AGG | + | chr5_1:13005928-13005947 | Msa0718690:five_prime_UTR | 35.0% | |
| TGTAGGAATAGTATGATTGG+AGG | + | chr5_1:13006122-13006141 | Msa0718690:five_prime_UTR | 35.0% | |
| GTATATCAGGTGGTGAAAAA+AGG | + | chr5_1:13006159-13006178 | Msa0718690:five_prime_UTR | 35.0% | |
| GAAAAAAGGAGAGTGAGTAT+AGG | + | chr5_1:13006173-13006192 | Msa0718690:five_prime_UTR | 35.0% | |
| TAGGTTCATCAAGCAACAAA+AGG | - | chr5_1:13006223-13006242 | None:intergenic | 35.0% | |
| !! | ATCAAAAAACTTGCTAGTGG+TGG | + | chr5_1:13006287-13006306 | Msa0718690:five_prime_UTR | 35.0% |
| !! | GAAGGGTGTCCTATATATTA+TGG | + | chr5_1:13006386-13006405 | Msa0718690:five_prime_UTR | 35.0% |
| GAAGCAGGACCATAATATAT+AGG | - | chr5_1:13006398-13006417 | None:intergenic | 35.0% | |
| CTTGAATACTTCTCATCTGT+CGG | + | chr5_1:13006425-13006444 | Msa0718690:five_prime_UTR | 35.0% | |
| AAAATTTAATCCCTCGGAGA+CGG | - | chr5_1:13006566-13006585 | None:intergenic | 35.0% | |
| AGTCTGACATTGTAATCTCA+AGG | - | chr5_1:13006591-13006610 | None:intergenic | 35.0% | |
| TACTATTACAAAGGGGAGTT+AGG | + | chr5_1:13007083-13007102 | Msa0718690:CDS | 35.0% | |
| ACTATTACAAAGGGGAGTTA+GGG | + | chr5_1:13007084-13007103 | Msa0718690:CDS | 35.0% | |
| GAAAAGCTACACTTATGACT+TGG | - | chr5_1:13007147-13007166 | None:intergenic | 35.0% | |
| !! | ATAAGTGTAGCTTTTCTAGC+TGG | + | chr5_1:13007151-13007170 | Msa0718690:CDS | 35.0% |
| TGAAAACTGCATTGTAGAGA+GGG | - | chr5_1:13007357-13007376 | None:intergenic | 35.0% | |
| ! | CTAGAAAGTACGATGAAAGA+CGG | - | chr5_1:13007432-13007451 | None:intergenic | 35.0% |
| AGTATGATGACAAATGCTGT+TGG | - | chr5_1:13007493-13007512 | None:intergenic | 35.0% | |
| TGTCATCATACTCTATTGGA+TGG | + | chr5_1:13007501-13007520 | Msa0718690:CDS | 35.0% | |
| GTCATCATACTCTATTGGAT+GGG | + | chr5_1:13007502-13007521 | Msa0718690:CDS | 35.0% | |
| !! | CAAAGTCTTGGATTAGCATT+TGG | + | chr5_1:13007595-13007614 | Msa0718690:CDS | 35.0% |
| !!! | AGCATTTGGTGCTATTTTGA+TGG | + | chr5_1:13007609-13007628 | Msa0718690:CDS | 35.0% |
| !! | ACACTTGTTTTTCTCATTGC+TGG | + | chr5_1:13007667-13007686 | Msa0718690:CDS | 35.0% |
| AAATTCCACCTTTCATAGTG+TGG | + | chr5_1:13007707-13007726 | Msa0718690:CDS | 35.0% | |
| TACTTAAGCCACACTATGAA+AGG | - | chr5_1:13007718-13007737 | None:intergenic | 35.0% | |
| TACTGTTACAAGCTTCTTCT+TGG | + | chr5_1:13007754-13007773 | Msa0718690:CDS | 35.0% | |
| CAATGGGATTGAATCATATG+TGG | + | chr5_1:13007857-13007876 | Msa0718690:CDS | 35.0% | |
| TTGCTTATTTAGCACTTCGT+AGG | + | chr5_1:13007926-13007945 | Msa0718690:CDS | 35.0% | |
| TGCTTATTTAGCACTTCGTA+GGG | + | chr5_1:13007927-13007946 | Msa0718690:CDS | 35.0% | |
| ! | GGTTAGGTAAATCTAAAGTG+TGG | + | chr5_1:13007948-13007967 | Msa0718690:exon | 35.0% |
| ! | TGCTATGCAATTTTGTGGCA+TGG | - | chr5_1:13005516-13005535 | None:intergenic | 40.0% |
| !! | TTGGGTGCTATGCAATTTTG+TGG | - | chr5_1:13005521-13005540 | None:intergenic | 40.0% |
| GTGTATGCAGTTTGAGGATT+TGG | + | chr5_1:13005738-13005757 | Msa0718690:intron | 40.0% | |
| TGCAGTGAACACTAGTGTTT+CGG | - | chr5_1:13006018-13006037 | None:intergenic | 40.0% | |
| ! | TAGTGTTCACTGCACTTTTG+AGG | + | chr5_1:13006024-13006043 | Msa0718690:five_prime_UTR | 40.0% |
| GAGAGAGTGATTTCTGAGTT+AGG | + | chr5_1:13006089-13006108 | Msa0718690:five_prime_UTR | 40.0% | |
| CCTGATATACCTCTCAAAAG+TGG | - | chr5_1:13006149-13006168 | None:intergenic | 40.0% | |
| !! | CCACTTTTGAGAGGTATATC+AGG | + | chr5_1:13006146-13006165 | Msa0718690:five_prime_UTR | 40.0% |
| !! | CTTTTGAGAGGTATATCAGG+TGG | + | chr5_1:13006149-13006168 | Msa0718690:five_prime_UTR | 40.0% |
| TCATCAAGCAACAAAAGGCT+TGG | - | chr5_1:13006218-13006237 | None:intergenic | 40.0% | |
| TTGCTTGATGAACCTACTTC+TGG | + | chr5_1:13006227-13006246 | Msa0718690:five_prime_UTR | 40.0% | |
| ! | TGATGAACCTACTTCTGGTT+TGG | + | chr5_1:13006232-13006251 | Msa0718690:five_prime_UTR | 40.0% |
| GTAGAATCCAAACCAGAAGT+AGG | - | chr5_1:13006242-13006261 | None:intergenic | 40.0% | |
| GTTCAAGATTCTCAAAGCAG+TGG | - | chr5_1:13006264-13006283 | None:intergenic | 40.0% | |
| ! | AAGGTTGTGTTGCTATCTGA+AGG | + | chr5_1:13006368-13006387 | Msa0718690:five_prime_UTR | 40.0% |
| ! | AGGTTGTGTTGCTATCTGAA+GGG | + | chr5_1:13006369-13006388 | Msa0718690:five_prime_UTR | 40.0% |
| TATTCAAGAGCAGTTGAAGC+AGG | - | chr5_1:13006413-13006432 | None:intergenic | 40.0% | |
| CACTTCTGTGACTGTTAATC+CGG | + | chr5_1:13006454-13006473 | Msa0718690:five_prime_UTR | 40.0% | |
| TTTGAAAGTCCATGACGTGT+CGG | - | chr5_1:13006626-13006645 | None:intergenic | 40.0% | |
| ! | GAAAATTGCAGGTATTGCAC+CGG | + | chr5_1:13006726-13006745 | Msa0718690:intron | 40.0% |
| TTCAGTACATGCTTAGAGTC+CGG | - | chr5_1:13006748-13006767 | None:intergenic | 40.0% | |
| AGCATGTACTGAACAAAGTG+AGG | + | chr5_1:13006755-13006774 | Msa0718690:five_prime_UTR | 40.0% | |
| !! | AAAAGCCGAAGTTTCTAGCA+TGG | + | chr5_1:13006851-13006870 | Msa0718690:exon | 40.0% |
| CATCTCCATGCTAGAAACTT+CGG | - | chr5_1:13006859-13006878 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGCATTCAAT+AGG | + | chr5_1:13007110-13007129 | Msa0718690:CDS | 40.0% |
| !!! | CTTTTCTAGCTGGACTATTG+TGG | + | chr5_1:13007161-13007180 | Msa0718690:CDS | 40.0% |
| AGCATCACACCTTGAAGATA+GGG | + | chr5_1:13007195-13007214 | Msa0718690:CDS | 40.0% | |
| GTGAAAACTGCATTGTAGAG+AGG | - | chr5_1:13007358-13007377 | None:intergenic | 40.0% | |
| ATCATACTCTATTGGATGGG+AGG | + | chr5_1:13007505-13007524 | Msa0718690:CDS | 40.0% | |
| AGTGAAAGGATGAAAGTGAC+AGG | - | chr5_1:13007544-13007563 | None:intergenic | 40.0% | |
| GTTGTTGTCTCTCAAAGTCT+TGG | + | chr5_1:13007583-13007602 | Msa0718690:CDS | 40.0% | |
| !! | CTTGTTTTTCTCATTGCTGG+AGG | + | chr5_1:13007670-13007689 | Msa0718690:CDS | 40.0% |
| TTAAGCCACACTATGAAAGG+TGG | - | chr5_1:13007715-13007734 | None:intergenic | 40.0% | |
| ! | GTTCATCATGGCCTTAATGT+TGG | + | chr5_1:13007888-13007907 | Msa0718690:CDS | 40.0% |
| ! | ATCATGGCCTTAATGTTGGT+TGG | + | chr5_1:13007892-13007911 | Msa0718690:CDS | 40.0% |
| ATTTAGCACTTCGTAGGGTT+AGG | + | chr5_1:13007932-13007951 | Msa0718690:CDS | 40.0% | |
| ! | GGTAAATCTAAAGTGTGGCA+TGG | + | chr5_1:13007953-13007972 | Msa0718690:exon | 40.0% |
| CTATGAGGATCACTCATGTG+TGG | - | chr5_1:13005583-13005602 | None:intergenic | 45.0% | |
| ACTGAATGGTATCACAGGTG+TGG | + | chr5_1:13005796-13005815 | Msa0718690:five_prime_UTR | 45.0% | |
| ! | AGTGCTGTTAGGAGTGTGTT+TGG | - | chr5_1:13005868-13005887 | None:intergenic | 45.0% |
| AACACACTCCTAACAGCACT+CGG | + | chr5_1:13005868-13005887 | Msa0718690:five_prime_UTR | 45.0% | |
| TTTCGGCTACGGTTAAGTGA+GGG | - | chr5_1:13006001-13006020 | None:intergenic | 45.0% | |
| GAACACTAGTGTTTCGGCTA+CGG | - | chr5_1:13006012-13006031 | None:intergenic | 45.0% | |
| !! | ATTGGAGGACCACTTTTGAG+AGG | + | chr5_1:13006137-13006156 | Msa0718690:five_prime_UTR | 45.0% |
| CGGATTAACAGTCACAGAAG+TGG | - | chr5_1:13006456-13006475 | None:intergenic | 45.0% | |
| AGATCAAGCAAGAGATCAGC+CGG | - | chr5_1:13006476-13006495 | None:intergenic | 45.0% | |
| CTCTTGCTTGATCTTGCCAA+TGG | + | chr5_1:13006482-13006501 | Msa0718690:five_prime_UTR | 45.0% | |
| ! | CATTTTATGACCGTCTCCGA+GGG | + | chr5_1:13006553-13006572 | Msa0718690:intron | 45.0% |
| TACTGAACAAAGTGAGGCCT+TGG | + | chr5_1:13006761-13006780 | Msa0718690:five_prime_UTR | 45.0% | |
| CAGCTTGTACACCATTGTTC+TGG | - | chr5_1:13007046-13007065 | None:intergenic | 45.0% | |
| CAGAACAATGGTGTACAAGC+TGG | + | chr5_1:13007044-13007063 | Msa0718690:CDS | 45.0% | |
| AACAATGGTGTACAAGCTGG+TGG | + | chr5_1:13007047-13007066 | Msa0718690:CDS | 45.0% | |
| AAAGGGGAGTTAGGGAAAGA+AGG | + | chr5_1:13007092-13007111 | Msa0718690:CDS | 45.0% | |
| ! | TTCTAGCTGGACTATTGTGG+TGG | + | chr5_1:13007164-13007183 | Msa0718690:CDS | 45.0% |
| CTATCTTCAAGGTGTGATGC+TGG | - | chr5_1:13007196-13007215 | None:intergenic | 45.0% | |
| CAGCATCACACCTTGAAGAT+AGG | + | chr5_1:13007194-13007213 | Msa0718690:CDS | 45.0% | |
| ACCAATCACTTGCGCTAGAA+CGG | + | chr5_1:13007250-13007269 | Msa0718690:intron | 45.0% | |
| GCTAATCAAGGAACGATCCT+CGG | + | chr5_1:13007399-13007418 | Msa0718690:CDS | 45.0% | |
| CTAATCAAGGAACGATCCTC+GGG | + | chr5_1:13007400-13007419 | Msa0718690:CDS | 45.0% | |
| AGGATGAAAGTGACAGGATC+AGG | - | chr5_1:13007538-13007557 | None:intergenic | 45.0% | |
| !! | GTGGGTTGATGTGTTCATCA+TGG | + | chr5_1:13007876-13007895 | Msa0718690:CDS | 45.0% |
| CTAGCTATGTTAGGGCCATC+AGG | + | chr5_1:13005836-13005855 | Msa0718690:five_prime_UTR | 50.0% | |
| !! | CGGTTAGTTTGCCGTTGAGA+CGG | - | chr5_1:13005897-13005916 | None:intergenic | 50.0% |
| CGTCTCAACGGCAAACTAAC+CGG | + | chr5_1:13005895-13005914 | Msa0718690:five_prime_UTR | 50.0% | |
| GTTTCGGCTACGGTTAAGTG+AGG | - | chr5_1:13006002-13006021 | None:intergenic | 50.0% | |
| CCTCGGAGACGGTCATAAAA+TGG | - | chr5_1:13006555-13006574 | None:intergenic | 50.0% | |
| ! | CCATTTTATGACCGTCTCCG+AGG | + | chr5_1:13006552-13006571 | Msa0718690:intron | 50.0% |
| ACTATTGAGCCGACACGTCA+TGG | + | chr5_1:13006614-13006633 | Msa0718690:intron | 50.0% | |
| AGTCTTCCGCTCATGTTCCA+AGG | - | chr5_1:13006781-13006800 | None:intergenic | 50.0% | |
| TCCGTTCTAGCGCAAGTGAT+TGG | - | chr5_1:13007254-13007273 | None:intergenic | 50.0% | |
| ATCACTTGCGCTAGAACGGA+TGG | + | chr5_1:13007254-13007273 | Msa0718690:intron | 50.0% | |
| TGAAAGACGGTACATTCCCG+AGG | - | chr5_1:13007419-13007438 | None:intergenic | 50.0% | |
| !! | GTTGGTAGTGCTAGCTCAAG+TGG | - | chr5_1:13007475-13007494 | None:intergenic | 50.0% |
| TTCAAAGGGGGAGTTGTGCA+AGG | + | chr5_1:13007810-13007829 | Msa0718690:CDS | 50.0% | |
| ATCACAGGTGTGGTGTGTCC+AGG | + | chr5_1:13005806-13005825 | Msa0718690:five_prime_UTR | 55.0% | |
| ATGTTAGGGCCATCAGGCAG+TGG | + | chr5_1:13005842-13005861 | Msa0718690:five_prime_UTR | 55.0% | |
| TGTGTTTGGCCACTGCCTGA+TGG | - | chr5_1:13005854-13005873 | None:intergenic | 55.0% | |
| ACACTCCTAACAGCACTCGG+AGG | + | chr5_1:13005871-13005890 | Msa0718690:five_prime_UTR | 55.0% | |
| GTGAGGCCTTGGAACATGAG+CGG | + | chr5_1:13006772-13006791 | Msa0718690:five_prime_UTR | 55.0% | |
| !! | CGGATGGACTAACACGATCG+AGG | + | chr5_1:13007270-13007289 | Msa0718690:intron | 55.0% |
| GGGGGAGTTGTGCAAGGTTA+TGG | + | chr5_1:13007816-13007835 | Msa0718690:CDS | 55.0% | |
| ! | GACGGCCTCCGAGTGCTGTT+AGG | - | chr5_1:13005879-13005898 | None:intergenic | 65.0% |
| GCACTCGGAGGCCGTCTCAA+CGG | + | chr5_1:13005883-13005902 | Msa0718690:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 13005413 | 13008144 | 13005413 | ID=Msa0718690;Name=Msa0718690 |
| chr5_1 | mRNA | 13005413 | 13008144 | 13005413 | ID=Msa0718690-mRNA-1;Parent=Msa0718690;Name=Msa0718690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1134|1|1|1|0.75|0.6|5|187|292 |
| chr5_1 | exon | 13005413 | 13005657 | 13005413 | ID=Msa0718690-mRNA-1:exon:5316;Parent=Msa0718690-mRNA-1 |
| chr5_1 | exon | 13005748 | 13006503 | 13005748 | ID=Msa0718690-mRNA-1:exon:5317;Parent=Msa0718690-mRNA-1 |
| chr5_1 | exon | 13006737 | 13006915 | 13006737 | ID=Msa0718690-mRNA-1:exon:5318;Parent=Msa0718690-mRNA-1 |
| chr5_1 | exon | 13007029 | 13007216 | 13007029 | ID=Msa0718690-mRNA-1:exon:5319;Parent=Msa0718690-mRNA-1 |
| chr5_1 | exon | 13007313 | 13008144 | 13007313 | ID=Msa0718690-mRNA-1:exon:5320;Parent=Msa0718690-mRNA-1 |
| chr5_1 | five_prime_UTR | 13005413 | 13005657 | 13005413 | ID=Msa0718690-mRNA-1:five_prime_utr;Parent=Msa0718690-mRNA-1 |
| chr5_1 | five_prime_UTR | 13005748 | 13006503 | 13005748 | ID=Msa0718690-mRNA-1:five_prime_utr;Parent=Msa0718690-mRNA-1 |
| chr5_1 | five_prime_UTR | 13006737 | 13006869 | 13006737 | ID=Msa0718690-mRNA-1:five_prime_utr;Parent=Msa0718690-mRNA-1 |
| chr5_1 | CDS | 13006870 | 13006915 | 13006870 | ID=Msa0718690-mRNA-1:cds;Parent=Msa0718690-mRNA-1 |
| chr5_1 | CDS | 13007029 | 13007216 | 13007029 | ID=Msa0718690-mRNA-1:cds;Parent=Msa0718690-mRNA-1 |
| chr5_1 | CDS | 13007313 | 13007957 | 13007313 | ID=Msa0718690-mRNA-1:cds;Parent=Msa0718690-mRNA-1 |
| chr5_1 | three_prime_UTR | 13007958 | 13008144 | 13007958 | ID=Msa0718690-mRNA-1:three_prime_utr;Parent=Msa0718690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
