AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418240 MtrunA17_Chr4g0063601 91.884 345 0 1 1 345 1 317 0.0 632
Msa1418240 MtrunA17_Chr3g0137921 84.302 344 54 0 2 345 6 349 0.0 610
Msa1418240 MtrunA17_Chr2g0307091 83.381 349 53 3 1 344 1 349 0.0 588
Msa1418240 MtrunA17_Chr7g0270591 44.940 336 181 3 9 343 10 342 2.52e-104 311
Msa1418240 MtrunA17_Chr4g0069261 50.000 306 151 2 9 313 6 310 2.05e-98 296
Msa1418240 MtrunA17_Chr2g0312911 43.302 321 179 3 13 331 10 329 1.50e-85 261
Msa1418240 MtrunA17_Chr3g0112981 32.441 299 182 6 18 305 29 318 3.46e-33 125
Msa1418240 MtrunA17_Chr8g0382081 34.007 297 180 9 18 305 16 305 1.26e-32 123
Msa1418240 MtrunA17_Chr5g0436341 32.558 301 183 6 16 305 11 302 2.83e-32 122
Msa1418240 MtrunA17_Chr1g0160071 23.684 342 244 7 3 332 1 337 7.82e-28 111
Msa1418240 MtrunA17_Chr3g0114581 23.708 329 239 6 11 332 12 335 2.06e-27 110
Msa1418240 MtrunA17_Chr4g0008071 30.928 291 191 5 21 305 20 306 2.87e-27 109
Msa1418240 MtrunA17_Chr8g0341861 27.326 344 235 9 8 338 163 504 1.92e-26 109
Msa1418240 MtrunA17_Chr4g0056661 28.947 304 202 7 18 313 57 354 7.60e-25 103
Msa1418240 MtrunA17_Chr4g0028931 26.957 345 208 15 25 345 22 346 1.81e-18 85.1
Msa1418240 MtrunA17_Chr2g0326791 25.449 334 213 13 25 344 22 333 4.20e-18 84.3
Msa1418240 MtrunA17_Chr6g0467391 24.841 314 207 11 25 326 22 318 2.78e-16 78.6
Msa1418240 MtrunA17_Chr6g0467371 24.841 314 207 11 25 326 22 318 2.78e-16 78.6
Msa1418240 MtrunA17_Chr3g0128961 25.466 322 195 12 42 335 37 341 1.27e-14 74.3
Msa1418240 MtrunA17_Chr3g0103641 32.911 158 96 3 155 305 3 157 2.29e-14 70.1
Msa1418240 MtrunA17_Chr3g0128951 25.161 310 189 10 42 335 37 319 3.51e-14 72.8
Msa1418240 MtrunA17_Chr2g0298931 24.768 323 217 9 28 345 69 370 2.16e-12 67.4
Msa1418240 MtrunA17_Chr6g0449891 24.920 313 215 8 4 305 104 407 1.87e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418240 AT5G25400.1 81.686 344 63 0 2 345 6 349 0.0 598
Msa1418240 AT2G25520.1 82.558 344 58 1 2 345 6 347 0.0 593
Msa1418240 AT4G32390.1 82.029 345 61 1 2 345 6 350 0.0 593
Msa1418240 AT5G11230.1 79.710 345 69 1 2 345 6 350 0.0 569
Msa1418240 AT3G17430.2 45.427 328 177 2 9 335 7 333 4.83e-98 295
Msa1418240 AT3G17430.1 45.427 328 177 2 9 335 7 333 4.83e-98 295
Msa1418240 AT1G48230.1 46.334 341 169 3 9 336 7 346 1.39e-96 291
Msa1418240 AT3G14410.1 42.771 332 187 3 4 333 5 335 1.32e-82 254
Msa1418240 AT1G53660.1 41.390 331 183 6 6 334 9 330 2.38e-82 253
Msa1418240 AT1G53660.3 41.390 331 183 6 6 334 27 348 4.64e-82 253
Msa1418240 AT1G53660.4 42.434 304 164 6 33 334 2 296 2.17e-78 242
Msa1418240 AT1G48230.2 44.891 274 137 3 76 336 1 273 1.98e-74 232
Msa1418240 AT1G53660.5 42.449 245 131 5 91 334 1 236 1.83e-58 189
Msa1418240 AT1G53660.2 41.294 201 117 1 5 204 26 226 6.18e-51 170
Msa1418240 AT1G21870.1 23.810 315 230 5 21 330 22 331 1.29e-30 119
Msa1418240 AT3G11320.1 31.757 296 188 5 18 305 15 304 1.62e-30 118
Msa1418240 AT5G05820.1 32.095 296 187 5 18 305 15 304 4.95e-30 117
Msa1418240 AT1G77610.1 24.383 324 232 6 21 336 16 334 4.50e-29 115
Msa1418240 AT3G10290.1 30.392 306 197 8 9 305 53 351 4.23e-27 110
Msa1418240 AT5G04160.1 30.255 314 199 8 3 305 1 305 2.87e-26 106
Msa1418240 AT1G12500.1 28.065 310 211 6 3 305 48 352 1.28e-23 100
Msa1418240 AT1G06470.4 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa1418240 AT1G06470.2 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa1418240 AT1G06470.1 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa1418240 AT1G06470.3 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa1418240 AT2G28315.1 27.187 320 199 13 25 333 22 318 7.75e-19 86.7
Msa1418240 AT2G28315.2 28.276 290 181 12 25 303 22 295 2.23e-17 82.0
Msa1418240 AT2G30460.1 27.941 272 165 9 83 336 73 331 9.24e-15 74.7
Msa1418240 AT2G30460.2 27.941 272 165 9 83 336 73 331 9.24e-15 74.7
Msa1418240 AT2G30460.3 27.941 272 165 9 83 336 52 310 9.85e-15 74.7
Msa1418240 AT2G30460.6 27.941 272 165 9 83 336 52 310 9.85e-15 74.7
Msa1418240 AT2G30460.5 27.941 272 165 9 83 336 52 310 9.85e-15 74.7
Msa1418240 AT1G06890.4 25.397 315 195 11 42 336 37 331 4.25e-13 70.1
Msa1418240 AT1G06890.3 25.397 315 195 11 42 336 37 331 4.36e-13 69.7
Msa1418240 AT1G06890.2 25.397 315 195 11 42 336 37 331 4.70e-13 69.7
Msa1418240 AT1G06890.1 25.397 315 195 11 42 336 37 331 4.70e-13 69.7
Msa1418240 AT5G33320.1 24.272 309 220 7 4 305 98 399 8.30e-11 63.2

Find 64 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGTTACACTTCAGCTTA+TGG 0.214354 tig0024555:+40835 Msa1418240:CDS
CCGATTAATTTGATTGGTTA+TGG 0.225210 tig0024555:+41202 Msa1418240:CDS
GGTGTTGCTGTTGCTGCTTA+TGG 0.242108 tig0024555:+40791 Msa1418240:CDS
ATTCTCGTGGTCGGTGATTA+AGG 0.249502 tig0024555:+41168 Msa1418240:CDS
GTGTTGCTGTTGCTGCTTAT+GGG 0.272371 tig0024555:+40792 Msa1418240:CDS
CACTTTACTCGCTTTCGTTA+TGG 0.286530 tig0024555:+40618 Msa1418240:CDS
CGATTAATTTGATTGGTTAT+GGG 0.330326 tig0024555:+41203 Msa1418240:CDS
TTCGAAGTTGCAGGCTCTTA+AGG 0.341248 tig0024555:+41258 Msa1418240:CDS
GCTTTGACTATGAATGTTGC+TGG 0.346970 tig0024555:+41118 Msa1418240:CDS
TAGATAAATATACGCAGAAT+TGG 0.353850 tig0024555:-40645 None:intergenic
GTTACACCGATTAATTTGAT+TGG 0.366012 tig0024555:+41196 Msa1418240:CDS
GGATAACTCAAGTTTCCATT+TGG 0.385544 tig0024555:+41015 Msa1418240:CDS
AAGAGAAATGGAAATCATAT+TGG 0.391631 tig0024555:-40768 None:intergenic
TTCCGATGGCGTTGTGAAGA+AGG 0.398342 tig0024555:+40358 Msa1418240:CDS
GGGAAGCTAAATTTGATACT+TGG 0.404187 tig0024555:+40813 Msa1418240:CDS
TTATAATCATTCGAAGTTGC+AGG 0.406175 tig0024555:+41249 Msa1418240:CDS
GAATGTTGCTGGGGTTGTTA+AGG 0.411142 tig0024555:+41129 Msa1418240:CDS
AGATCGAGTTGAATCAGTTC+TGG 0.413437 tig0024555:-41378 None:intergenic
AATATGATTTCCATTTCTCT+TGG 0.417528 tig0024555:+40770 Msa1418240:CDS
CATACACCTACGTCGCAATC+TGG 0.421498 tig0024555:+40390 Msa1418240:CDS
CCTGTTGCTGTTTATTCGAT+TGG 0.427774 tig0024555:+40704 Msa1418240:CDS
ATGTAATACAACGAAGTAAT+CGG 0.430025 tig0024555:-40929 None:intergenic
AACAGCAACACCAAGAGAAA+TGG 0.430794 tig0024555:-40780 None:intergenic
CCATAACCAATCAAATTAAT+CGG 0.432294 tig0024555:-41202 None:intergenic
TTACATTGCGCCATGTTGTT+TGG 0.446571 tig0024555:+40946 Msa1418240:CDS
TGAATCATGGTTAGAGAGAT+CGG 0.453928 tig0024555:-40485 None:intergenic
CTTTGACTATGAATGTTGCT+GGG 0.457141 tig0024555:+41119 Msa1418240:CDS
CTCAAATCTGTTGTTCCAAT+CGG 0.464601 tig0024555:+40593 Msa1418240:CDS
AGATCGCGTGACATTGAAAC+AGG 0.469171 tig0024555:-40566 None:intergenic
GGAAGCTAAATTTGATACTT+GGG 0.472356 tig0024555:+40814 Msa1418240:CDS
TAGATCGTAAGATGTACAAT+TGG 0.478800 tig0024555:+40456 Msa1418240:CDS
TTGAGCCTTCTTCTGCGTCT+CGG 0.479012 tig0024555:-41284 None:intergenic
CCAATCGAATAAACAGCAAC+AGG 0.480862 tig0024555:-40704 None:intergenic
TAATTTGATTGGTTATGGGT+TGG 0.488621 tig0024555:+41207 Msa1418240:CDS
TTGCTGGGGTTGTTAAGGAT+TGG 0.496578 tig0024555:+41134 Msa1418240:CDS
GTATTTGTTGTAAACGATAA+CGG 0.498137 tig0024555:-40429 None:intergenic
AGCGAGTAAAGTGCACCGAT+TGG 0.499200 tig0024555:-40608 None:intergenic
TGAAGAGGCTGGAAGGTTGT+TGG 0.507877 tig0024555:+41315 Msa1418240:CDS
GGCTTCCGAGACGCAGAAGA+AGG 0.521970 tig0024555:+41279 Msa1418240:CDS
AGGTTGTTGGAACAGAGAGA+TGG 0.527055 tig0024555:+41328 Msa1418240:CDS
CAGAGAGATGGAGAAGGGAC+TGG 0.531231 tig0024555:+41340 Msa1418240:CDS
GAATCATGGTTAGAGAGATC+GGG 0.533528 tig0024555:-40484 None:intergenic
CAACAGAGTGATGAAGAGGC+TGG 0.548342 tig0024555:+41304 Msa1418240:CDS
GTTGATTGCATTCTCGTGGT+CGG 0.553496 tig0024555:+41159 Msa1418240:CDS
TGTTGAGTATCCTTCGTTGA+GGG 0.554979 tig0024555:+40994 Msa1418240:CDS
GGCTCAACAGAGTGATGAAG+AGG 0.559642 tig0024555:+41300 Msa1418240:CDS
TTGTTGAGTATCCTTCGTTG+AGG 0.563149 tig0024555:+40993 Msa1418240:CDS
ATGGTTAGAGAGATCGGGTA+AGG 0.564381 tig0024555:-40479 None:intergenic
TGTTGCTGTTGCTGCTTATG+GGG 0.565614 tig0024555:+40793 Msa1418240:CDS
GAGATGGAGAAGGGACTGGA+AGG 0.571557 tig0024555:+41344 Msa1418240:CDS
AACCTTCTTCACAACGCCAT+CGG 0.572106 tig0024555:-40360 None:intergenic
CTCTCTAACCATGATTCACA+TGG 0.588163 tig0024555:+40490 Msa1418240:CDS
TTTGTTGGTTGGGAAGACGT+CGG 0.592329 tig0024555:+41096 Msa1418240:CDS
TTGGAACAGAGAGATGGAGA+AGG 0.602800 tig0024555:+41334 Msa1418240:CDS
AGAGTGATGAAGAGGCTGGA+AGG 0.603959 tig0024555:+41308 Msa1418240:CDS
GGTTGTTGATTGCATTCTCG+TGG 0.604485 tig0024555:+41155 Msa1418240:CDS
GAAGATCCAGATTGCGACGT+AGG 0.612548 tig0024555:-40396 None:intergenic
GAAGCTAAATTTGATACTTG+GGG 0.628264 tig0024555:+40815 Msa1418240:CDS
TGGAACAGAGAGATGGAGAA+GGG 0.630504 tig0024555:+41335 Msa1418240:CDS
GGATACTCAACAATAAGCCA+AGG 0.631347 tig0024555:-40983 None:intergenic
AAACGATAACGGTGAAGCTG+AGG 0.632551 tig0024555:-40418 None:intergenic
TTGCGACGTAGGTGTATGAG+AGG 0.648256 tig0024555:-40385 None:intergenic
TTTGACTATGAATGTTGCTG+GGG 0.655153 tig0024555:+41120 Msa1418240:CDS
CTTGAGTTATCCCTCAACGA+AGG 0.699678 tig0024555:-41004 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTGTTGTAAACGATAA+CGG - tig0024555:40432-40451 None:intergenic 25.0%
! TAGATAAATATACGCAGAAT+TGG - tig0024555:40648-40667 None:intergenic 25.0%
!!! AGGTTTTAAGAATGAAACTA+TGG + tig0024555:40745-40764 Msa1418240:CDS 25.0%
! AAGAGAAATGGAAATCATAT+TGG - tig0024555:40771-40790 None:intergenic 25.0%
! AATATGATTTCCATTTCTCT+TGG + tig0024555:40770-40789 Msa1418240:CDS 25.0%
! ATGTAATACAACGAAGTAAT+CGG - tig0024555:40932-40951 None:intergenic 25.0%
! CCATAACCAATCAAATTAAT+CGG - tig0024555:41205-41224 None:intergenic 25.0%
!! CGATTAATTTGATTGGTTAT+GGG + tig0024555:41203-41222 Msa1418240:CDS 25.0%
!!! GTATTTGTTGTAAACGATAA+CGG - tig0024555:40432-40451 None:intergenic 25.0%
! TAGATAAATATACGCAGAAT+TGG - tig0024555:40648-40667 None:intergenic 25.0%
!!! AGGTTTTAAGAATGAAACTA+TGG + tig0024555:40745-40764 Msa1418240:CDS 25.0%
! AAGAGAAATGGAAATCATAT+TGG - tig0024555:40771-40790 None:intergenic 25.0%
! AATATGATTTCCATTTCTCT+TGG + tig0024555:40770-40789 Msa1418240:CDS 25.0%
! ATGTAATACAACGAAGTAAT+CGG - tig0024555:40932-40951 None:intergenic 25.0%
! CCATAACCAATCAAATTAAT+CGG - tig0024555:41205-41224 None:intergenic 25.0%
!! CGATTAATTTGATTGGTTAT+GGG + tig0024555:41203-41222 Msa1418240:CDS 25.0%
TAGATCGTAAGATGTACAAT+TGG + tig0024555:40456-40475 Msa1418240:CDS 30.0%
!!! GGTGTTTTGTTTAAGAAAGA+AGG + tig0024555:40725-40744 Msa1418240:CDS 30.0%
GGAAGCTAAATTTGATACTT+GGG + tig0024555:40814-40833 Msa1418240:CDS 30.0%
GAAGCTAAATTTGATACTTG+GGG + tig0024555:40815-40834 Msa1418240:CDS 30.0%
! TCAGATTTTGCTTAATTCGA+AGG + tig0024555:40892-40911 Msa1418240:CDS 30.0%
! CAGATTTTGCTTAATTCGAA+GGG + tig0024555:40893-40912 Msa1418240:CDS 30.0%
! AGATTTTGCTTAATTCGAAG+GGG + tig0024555:40894-40913 Msa1418240:CDS 30.0%
! ATTTGGATTTCGCGATTTTT+GGG + tig0024555:41032-41051 Msa1418240:CDS 30.0%
! GTTACACCGATTAATTTGAT+TGG + tig0024555:41196-41215 Msa1418240:CDS 30.0%
! CCGATTAATTTGATTGGTTA+TGG + tig0024555:41202-41221 Msa1418240:CDS 30.0%
! TAATTTGATTGGTTATGGGT+TGG + tig0024555:41207-41226 Msa1418240:CDS 30.0%
TTATAATCATTCGAAGTTGC+AGG + tig0024555:41249-41268 Msa1418240:CDS 30.0%
TAGATCGTAAGATGTACAAT+TGG + tig0024555:40456-40475 Msa1418240:CDS 30.0%
!!! GGTGTTTTGTTTAAGAAAGA+AGG + tig0024555:40725-40744 Msa1418240:CDS 30.0%
GGAAGCTAAATTTGATACTT+GGG + tig0024555:40814-40833 Msa1418240:CDS 30.0%
GAAGCTAAATTTGATACTTG+GGG + tig0024555:40815-40834 Msa1418240:CDS 30.0%
! TCAGATTTTGCTTAATTCGA+AGG + tig0024555:40892-40911 Msa1418240:CDS 30.0%
! CAGATTTTGCTTAATTCGAA+GGG + tig0024555:40893-40912 Msa1418240:CDS 30.0%
! AGATTTTGCTTAATTCGAAG+GGG + tig0024555:40894-40913 Msa1418240:CDS 30.0%
! ATTTGGATTTCGCGATTTTT+GGG + tig0024555:41032-41051 Msa1418240:CDS 30.0%
! GTTACACCGATTAATTTGAT+TGG + tig0024555:41196-41215 Msa1418240:CDS 30.0%
! CCGATTAATTTGATTGGTTA+TGG + tig0024555:41202-41221 Msa1418240:CDS 30.0%
! TAATTTGATTGGTTATGGGT+TGG + tig0024555:41207-41226 Msa1418240:CDS 30.0%
TTATAATCATTCGAAGTTGC+AGG + tig0024555:41249-41268 Msa1418240:CDS 30.0%
TGAATCATGGTTAGAGAGAT+CGG - tig0024555:40488-40507 None:intergenic 35.0%
ACAAAAAGCCATGTGAATCA+TGG - tig0024555:40501-40520 None:intergenic 35.0%
CTCAAATCTGTTGTTCCAAT+CGG + tig0024555:40593-40612 Msa1418240:CDS 35.0%
GGGAAGCTAAATTTGATACT+TGG + tig0024555:40813-40832 Msa1418240:CDS 35.0%
GACAAAAACACCAAACAACA+TGG - tig0024555:40959-40978 None:intergenic 35.0%
GGATAACTCAAGTTTCCATT+TGG + tig0024555:41015-41034 Msa1418240:CDS 35.0%
CAAAAATCGCGAAATCCAAA+TGG - tig0024555:41033-41052 None:intergenic 35.0%
! CATTTGGATTTCGCGATTTT+TGG + tig0024555:41031-41050 Msa1418240:CDS 35.0%
CTTTGACTATGAATGTTGCT+GGG + tig0024555:41119-41138 Msa1418240:CDS 35.0%
TTTGACTATGAATGTTGCTG+GGG + tig0024555:41120-41139 Msa1418240:CDS 35.0%
TGAATCATGGTTAGAGAGAT+CGG - tig0024555:40488-40507 None:intergenic 35.0%
ACAAAAAGCCATGTGAATCA+TGG - tig0024555:40501-40520 None:intergenic 35.0%
CTCAAATCTGTTGTTCCAAT+CGG + tig0024555:40593-40612 Msa1418240:CDS 35.0%
GGGAAGCTAAATTTGATACT+TGG + tig0024555:40813-40832 Msa1418240:CDS 35.0%
GACAAAAACACCAAACAACA+TGG - tig0024555:40959-40978 None:intergenic 35.0%
GGATAACTCAAGTTTCCATT+TGG + tig0024555:41015-41034 Msa1418240:CDS 35.0%
CAAAAATCGCGAAATCCAAA+TGG - tig0024555:41033-41052 None:intergenic 35.0%
! CATTTGGATTTCGCGATTTT+TGG + tig0024555:41031-41050 Msa1418240:CDS 35.0%
CTTTGACTATGAATGTTGCT+GGG + tig0024555:41119-41138 Msa1418240:CDS 35.0%
TTTGACTATGAATGTTGCTG+GGG + tig0024555:41120-41139 Msa1418240:CDS 35.0%
GAATCATGGTTAGAGAGATC+GGG - tig0024555:40487-40506 None:intergenic 40.0%
CTCTCTAACCATGATTCACA+TGG + tig0024555:40490-40509 Msa1418240:CDS 40.0%
CACTTTACTCGCTTTCGTTA+TGG + tig0024555:40618-40637 Msa1418240:CDS 40.0%
CCAATCGAATAAACAGCAAC+AGG - tig0024555:40707-40726 None:intergenic 40.0%
!! CCTGTTGCTGTTTATTCGAT+TGG + tig0024555:40704-40723 Msa1418240:CDS 40.0%
AACAGCAACACCAAGAGAAA+TGG - tig0024555:40783-40802 None:intergenic 40.0%
!!! TGCTTTTGAAGCAACACGTT+TGG + tig0024555:40862-40881 Msa1418240:CDS 40.0%
TTACATTGCGCCATGTTGTT+TGG + tig0024555:40946-40965 Msa1418240:CDS 40.0%
!! TGGTGTTTTTGTCTGTTCCT+TGG + tig0024555:40966-40985 Msa1418240:CDS 40.0%
GGATACTCAACAATAAGCCA+AGG - tig0024555:40986-41005 None:intergenic 40.0%
TTGTTGAGTATCCTTCGTTG+AGG + tig0024555:40993-41012 Msa1418240:CDS 40.0%
TGTTGAGTATCCTTCGTTGA+GGG + tig0024555:40994-41013 Msa1418240:CDS 40.0%
!! GAATCTTGCCGTGTTTTTGT+TGG + tig0024555:41081-41100 Msa1418240:CDS 40.0%
!! TTGCCGTGTTTTTGTTGGTT+GGG + tig0024555:41086-41105 Msa1418240:CDS 40.0%
CTTCCCAACCAACAAAAACA+CGG - tig0024555:41092-41111 None:intergenic 40.0%
GCTTTGACTATGAATGTTGC+TGG + tig0024555:41118-41137 Msa1418240:CDS 40.0%
GAATCATGGTTAGAGAGATC+GGG - tig0024555:40487-40506 None:intergenic 40.0%
CTCTCTAACCATGATTCACA+TGG + tig0024555:40490-40509 Msa1418240:CDS 40.0%
CACTTTACTCGCTTTCGTTA+TGG + tig0024555:40618-40637 Msa1418240:CDS 40.0%
CCAATCGAATAAACAGCAAC+AGG - tig0024555:40707-40726 None:intergenic 40.0%
!! CCTGTTGCTGTTTATTCGAT+TGG + tig0024555:40704-40723 Msa1418240:CDS 40.0%
AACAGCAACACCAAGAGAAA+TGG - tig0024555:40783-40802 None:intergenic 40.0%
!!! TGCTTTTGAAGCAACACGTT+TGG + tig0024555:40862-40881 Msa1418240:CDS 40.0%
TTACATTGCGCCATGTTGTT+TGG + tig0024555:40946-40965 Msa1418240:CDS 40.0%
!! TGGTGTTTTTGTCTGTTCCT+TGG + tig0024555:40966-40985 Msa1418240:CDS 40.0%
GGATACTCAACAATAAGCCA+AGG - tig0024555:40986-41005 None:intergenic 40.0%
TTGTTGAGTATCCTTCGTTG+AGG + tig0024555:40993-41012 Msa1418240:CDS 40.0%
TGTTGAGTATCCTTCGTTGA+GGG + tig0024555:40994-41013 Msa1418240:CDS 40.0%
!! GAATCTTGCCGTGTTTTTGT+TGG + tig0024555:41081-41100 Msa1418240:CDS 40.0%
!! TTGCCGTGTTTTTGTTGGTT+GGG + tig0024555:41086-41105 Msa1418240:CDS 40.0%
CTTCCCAACCAACAAAAACA+CGG - tig0024555:41092-41111 None:intergenic 40.0%
GCTTTGACTATGAATGTTGC+TGG + tig0024555:41118-41137 Msa1418240:CDS 40.0%
AACCTTCTTCACAACGCCAT+CGG - tig0024555:40363-40382 None:intergenic 45.0%
! AAACGATAACGGTGAAGCTG+AGG - tig0024555:40421-40440 None:intergenic 45.0%
ATGGTTAGAGAGATCGGGTA+AGG - tig0024555:40482-40501 None:intergenic 45.0%
AGATCGCGTGACATTGAAAC+AGG - tig0024555:40569-40588 None:intergenic 45.0%
! GTGTTGCTGTTGCTGCTTAT+GGG + tig0024555:40792-40811 Msa1418240:CDS 45.0%
! TGTTGCTGTTGCTGCTTATG+GGG + tig0024555:40793-40812 Msa1418240:CDS 45.0%
! GGGTGTTACACTTCAGCTTA+TGG + tig0024555:40835-40854 Msa1418240:CDS 45.0%
CTTGAGTTATCCCTCAACGA+AGG - tig0024555:41007-41026 None:intergenic 45.0%
!! CTTGCCGTGTTTTTGTTGGT+TGG + tig0024555:41085-41104 Msa1418240:CDS 45.0%
! TTTGTTGGTTGGGAAGACGT+CGG + tig0024555:41096-41115 Msa1418240:CDS 45.0%
GAATGTTGCTGGGGTTGTTA+AGG + tig0024555:41129-41148 Msa1418240:CDS 45.0%
TTGCTGGGGTTGTTAAGGAT+TGG + tig0024555:41134-41153 Msa1418240:CDS 45.0%
! GGTTGTTGATTGCATTCTCG+TGG + tig0024555:41155-41174 Msa1418240:CDS 45.0%
GTTGATTGCATTCTCGTGGT+CGG + tig0024555:41159-41178 Msa1418240:CDS 45.0%
ATTCTCGTGGTCGGTGATTA+AGG + tig0024555:41168-41187 Msa1418240:CDS 45.0%
!!! TGGTTATGGGTTGGCGTTTT+TGG + tig0024555:41216-41235 Msa1418240:CDS 45.0%
!!! GGTTATGGGTTGGCGTTTTT+GGG + tig0024555:41217-41236 Msa1418240:CDS 45.0%
!!! GTTATGGGTTGGCGTTTTTG+GGG + tig0024555:41218-41237 Msa1418240:CDS 45.0%
!!! TTATGGGTTGGCGTTTTTGG+GGG + tig0024555:41219-41238 Msa1418240:CDS 45.0%
TTCGAAGTTGCAGGCTCTTA+AGG + tig0024555:41258-41277 Msa1418240:CDS 45.0%
AGGTTGTTGGAACAGAGAGA+TGG + tig0024555:41328-41347 Msa1418240:CDS 45.0%
TTGGAACAGAGAGATGGAGA+AGG + tig0024555:41334-41353 Msa1418240:CDS 45.0%
TGGAACAGAGAGATGGAGAA+GGG + tig0024555:41335-41354 Msa1418240:CDS 45.0%
AACCTTCTTCACAACGCCAT+CGG - tig0024555:40363-40382 None:intergenic 45.0%
! AAACGATAACGGTGAAGCTG+AGG - tig0024555:40421-40440 None:intergenic 45.0%
ATGGTTAGAGAGATCGGGTA+AGG - tig0024555:40482-40501 None:intergenic 45.0%
AGATCGCGTGACATTGAAAC+AGG - tig0024555:40569-40588 None:intergenic 45.0%
! GTGTTGCTGTTGCTGCTTAT+GGG + tig0024555:40792-40811 Msa1418240:CDS 45.0%
! TGTTGCTGTTGCTGCTTATG+GGG + tig0024555:40793-40812 Msa1418240:CDS 45.0%
! GGGTGTTACACTTCAGCTTA+TGG + tig0024555:40835-40854 Msa1418240:CDS 45.0%
CTTGAGTTATCCCTCAACGA+AGG - tig0024555:41007-41026 None:intergenic 45.0%
!! CTTGCCGTGTTTTTGTTGGT+TGG + tig0024555:41085-41104 Msa1418240:CDS 45.0%
! TTTGTTGGTTGGGAAGACGT+CGG + tig0024555:41096-41115 Msa1418240:CDS 45.0%
GAATGTTGCTGGGGTTGTTA+AGG + tig0024555:41129-41148 Msa1418240:CDS 45.0%
TTGCTGGGGTTGTTAAGGAT+TGG + tig0024555:41134-41153 Msa1418240:CDS 45.0%
! GGTTGTTGATTGCATTCTCG+TGG + tig0024555:41155-41174 Msa1418240:CDS 45.0%
GTTGATTGCATTCTCGTGGT+CGG + tig0024555:41159-41178 Msa1418240:CDS 45.0%
ATTCTCGTGGTCGGTGATTA+AGG + tig0024555:41168-41187 Msa1418240:CDS 45.0%
!!! TGGTTATGGGTTGGCGTTTT+TGG + tig0024555:41216-41235 Msa1418240:CDS 45.0%
!!! GGTTATGGGTTGGCGTTTTT+GGG + tig0024555:41217-41236 Msa1418240:CDS 45.0%
!!! GTTATGGGTTGGCGTTTTTG+GGG + tig0024555:41218-41237 Msa1418240:CDS 45.0%
!!! TTATGGGTTGGCGTTTTTGG+GGG + tig0024555:41219-41238 Msa1418240:CDS 45.0%
TTCGAAGTTGCAGGCTCTTA+AGG + tig0024555:41258-41277 Msa1418240:CDS 45.0%
AGGTTGTTGGAACAGAGAGA+TGG + tig0024555:41328-41347 Msa1418240:CDS 45.0%
TTGGAACAGAGAGATGGAGA+AGG + tig0024555:41334-41353 Msa1418240:CDS 45.0%
TGGAACAGAGAGATGGAGAA+GGG + tig0024555:41335-41354 Msa1418240:CDS 45.0%
TTCCGATGGCGTTGTGAAGA+AGG + tig0024555:40358-40377 Msa1418240:CDS 50.0%
TTGCGACGTAGGTGTATGAG+AGG - tig0024555:40388-40407 None:intergenic 50.0%
CATACACCTACGTCGCAATC+TGG + tig0024555:40390-40409 Msa1418240:CDS 50.0%
GAAGATCCAGATTGCGACGT+AGG - tig0024555:40399-40418 None:intergenic 50.0%
! AGCGAGTAAAGTGCACCGAT+TGG - tig0024555:40611-40630 None:intergenic 50.0%
!! GGTGTTGCTGTTGCTGCTTA+TGG + tig0024555:40791-40810 Msa1418240:CDS 50.0%
TTGAGCCTTCTTCTGCGTCT+CGG - tig0024555:41287-41306 None:intergenic 50.0%
GGCTCAACAGAGTGATGAAG+AGG + tig0024555:41300-41319 Msa1418240:CDS 50.0%
CAACAGAGTGATGAAGAGGC+TGG + tig0024555:41304-41323 Msa1418240:CDS 50.0%
AGAGTGATGAAGAGGCTGGA+AGG + tig0024555:41308-41327 Msa1418240:CDS 50.0%
TGAAGAGGCTGGAAGGTTGT+TGG + tig0024555:41315-41334 Msa1418240:CDS 50.0%
TTCCGATGGCGTTGTGAAGA+AGG + tig0024555:40358-40377 Msa1418240:CDS 50.0%
TTGCGACGTAGGTGTATGAG+AGG - tig0024555:40388-40407 None:intergenic 50.0%
CATACACCTACGTCGCAATC+TGG + tig0024555:40390-40409 Msa1418240:CDS 50.0%
GAAGATCCAGATTGCGACGT+AGG - tig0024555:40399-40418 None:intergenic 50.0%
! AGCGAGTAAAGTGCACCGAT+TGG - tig0024555:40611-40630 None:intergenic 50.0%
!! GGTGTTGCTGTTGCTGCTTA+TGG + tig0024555:40791-40810 Msa1418240:CDS 50.0%
TTGAGCCTTCTTCTGCGTCT+CGG - tig0024555:41287-41306 None:intergenic 50.0%
GGCTCAACAGAGTGATGAAG+AGG + tig0024555:41300-41319 Msa1418240:CDS 50.0%
CAACAGAGTGATGAAGAGGC+TGG + tig0024555:41304-41323 Msa1418240:CDS 50.0%
AGAGTGATGAAGAGGCTGGA+AGG + tig0024555:41308-41327 Msa1418240:CDS 50.0%
TGAAGAGGCTGGAAGGTTGT+TGG + tig0024555:41315-41334 Msa1418240:CDS 50.0%
CAGAGAGATGGAGAAGGGAC+TGG + tig0024555:41340-41359 Msa1418240:CDS 55.0%
GAGATGGAGAAGGGACTGGA+AGG + tig0024555:41344-41363 Msa1418240:CDS 55.0%
CAGAGAGATGGAGAAGGGAC+TGG + tig0024555:41340-41359 Msa1418240:CDS 55.0%
GAGATGGAGAAGGGACTGGA+AGG + tig0024555:41344-41363 Msa1418240:CDS 55.0%
GGCTTCCGAGACGCAGAAGA+AGG + tig0024555:41279-41298 Msa1418240:CDS 60.0%
GGCTTCCGAGACGCAGAAGA+AGG + tig0024555:41279-41298 Msa1418240:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0024555 gene 40350 41387 40350 ID=Msa1418240;Name=Msa1418240
tig0024555 mRNA 40350 41387 40350 ID=Msa1418240-mRNA-1;Parent=Msa1418240;Name=Msa1418240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|345
tig0024555 exon 40350 41387 40350 ID=Msa1418240-mRNA-1:exon:234;Parent=Msa1418240-mRNA-1
tig0024555 CDS 40350 41387 40350 ID=Msa1418240-mRNA-1:cds;Parent=Msa1418240-mRNA-1
Gene Sequence

>Msa1418240

ATGGCGGTTTCCGATGGCGTTGTGAAGAAGGTTATCCTCTCATACACCTACGTCGCAATCTGGATCTTCCTCAGCTTCACCGTTATCGTTTACAACAAATACATCTTAGATCGTAAGATGTACAATTGGCCTTACCCGATCTCTCTAACCATGATTCACATGGCTTTTTGTTCTTCACTCGCTTACGTTCTCGTTCGTGTTTTCAAGCTTGTTGAACCTGTTTCAATGTCACGCGATCTGTATCTCAAATCTGTTGTTCCAATCGGTGCACTTTACTCGCTTTCGTTATGGTTTTCCAATTCTGCGTATATTTATCTATCTGTTTCGTTTATTCAGATGCTGAAAGCGCTTATGCCTGTTGCTGTTTATTCGATTGGTGTTTTGTTTAAGAAAGAAGGTTTTAAGAATGAAACTATGGCCAATATGATTTCCATTTCTCTTGGTGTTGCTGTTGCTGCTTATGGGGAAGCTAAATTTGATACTTGGGGTGTTACACTTCAGCTTATGGCTGTTGCTTTTGAAGCAACACGTTTGGTTTTGATTCAGATTTTGCTTAATTCGAAGGGGATTTCGTTGAATCCGATTACTTCGTTGTATTACATTGCGCCATGTTGTTTGGTGTTTTTGTCTGTTCCTTGGCTTATTGTTGAGTATCCTTCGTTGAGGGATAACTCAAGTTTCCATTTGGATTTCGCGATTTTTGGGACAAATTCGCTATGTGCTTTTGCTTTGAATCTTGCCGTGTTTTTGTTGGTTGGGAAGACGTCGGCTTTGACTATGAATGTTGCTGGGGTTGTTAAGGATTGGTTGTTGATTGCATTCTCGTGGTCGGTGATTAAGGATACTGTTACACCGATTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCGAAGTTGCAGGCTCTTAAGGCTTCCGAGACGCAGAAGAAGGCTCAACAGAGTGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGATGGAGAAGGGACTGGAAGGAAGAGCGACAGCCAGAACTGA

Protein sequence

>Msa1418240

MAVSDGVVKKVILSYTYVAIWIFLSFTVIVYNKYILDRKMYNWPYPISLTMIHMAFCSSLAYVLVRVFKLVEPVSMSRDLYLKSVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVLFKKEGFKNETMANMISISLGVAVAAYGEAKFDTWGVTLQLMAVAFEATRLVLIQILLNSKGISLNPITSLYYIAPCCLVFLSVPWLIVEYPSLRDNSSFHLDFAIFGTNSLCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLIGYGLAFLGVAYYNHSKLQALKASETQKKAQQSDEEAGRLLEQRDGEGTGRKSDSQN*