AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485240 MtrunA17_Chr4g0063601 91.884 345 0 1 1 345 1 317 0.0 632
Msa0485240 MtrunA17_Chr3g0137921 84.302 344 54 0 2 345 6 349 0.0 610
Msa0485240 MtrunA17_Chr2g0307091 83.381 349 53 3 1 344 1 349 0.0 588
Msa0485240 MtrunA17_Chr7g0270591 44.940 336 181 3 9 343 10 342 2.52e-104 311
Msa0485240 MtrunA17_Chr4g0069261 50.000 306 151 2 9 313 6 310 2.05e-98 296
Msa0485240 MtrunA17_Chr2g0312911 43.302 321 179 3 13 331 10 329 1.50e-85 261
Msa0485240 MtrunA17_Chr3g0112981 32.441 299 182 6 18 305 29 318 3.46e-33 125
Msa0485240 MtrunA17_Chr8g0382081 34.007 297 180 9 18 305 16 305 1.26e-32 123
Msa0485240 MtrunA17_Chr5g0436341 32.558 301 183 6 16 305 11 302 2.83e-32 122
Msa0485240 MtrunA17_Chr1g0160071 23.684 342 244 7 3 332 1 337 7.82e-28 111
Msa0485240 MtrunA17_Chr3g0114581 23.708 329 239 6 11 332 12 335 2.06e-27 110
Msa0485240 MtrunA17_Chr4g0008071 30.928 291 191 5 21 305 20 306 2.87e-27 109
Msa0485240 MtrunA17_Chr8g0341861 27.326 344 235 9 8 338 163 504 1.92e-26 109
Msa0485240 MtrunA17_Chr4g0056661 28.947 304 202 7 18 313 57 354 7.60e-25 103
Msa0485240 MtrunA17_Chr4g0028931 26.957 345 208 15 25 345 22 346 1.81e-18 85.1
Msa0485240 MtrunA17_Chr2g0326791 25.449 334 213 13 25 344 22 333 4.20e-18 84.3
Msa0485240 MtrunA17_Chr6g0467391 24.841 314 207 11 25 326 22 318 2.78e-16 78.6
Msa0485240 MtrunA17_Chr6g0467371 24.841 314 207 11 25 326 22 318 2.78e-16 78.6
Msa0485240 MtrunA17_Chr3g0128961 25.466 322 195 12 42 335 37 341 1.27e-14 74.3
Msa0485240 MtrunA17_Chr3g0103641 32.911 158 96 3 155 305 3 157 2.29e-14 70.1
Msa0485240 MtrunA17_Chr3g0128951 25.161 310 189 10 42 335 37 319 3.51e-14 72.8
Msa0485240 MtrunA17_Chr2g0298931 24.768 323 217 9 28 345 69 370 2.16e-12 67.4
Msa0485240 MtrunA17_Chr6g0449891 24.920 313 215 8 4 305 104 407 1.87e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485240 AT5G25400.1 81.686 344 63 0 2 345 6 349 0.0 598
Msa0485240 AT2G25520.1 82.558 344 58 1 2 345 6 347 0.0 593
Msa0485240 AT4G32390.1 82.029 345 61 1 2 345 6 350 0.0 593
Msa0485240 AT5G11230.1 79.710 345 69 1 2 345 6 350 0.0 569
Msa0485240 AT3G17430.2 45.427 328 177 2 9 335 7 333 4.83e-98 295
Msa0485240 AT3G17430.1 45.427 328 177 2 9 335 7 333 4.83e-98 295
Msa0485240 AT1G48230.1 46.334 341 169 3 9 336 7 346 1.39e-96 291
Msa0485240 AT3G14410.1 42.771 332 187 3 4 333 5 335 1.32e-82 254
Msa0485240 AT1G53660.1 41.390 331 183 6 6 334 9 330 2.38e-82 253
Msa0485240 AT1G53660.3 41.390 331 183 6 6 334 27 348 4.64e-82 253
Msa0485240 AT1G53660.4 42.434 304 164 6 33 334 2 296 2.17e-78 242
Msa0485240 AT1G48230.2 44.891 274 137 3 76 336 1 273 1.98e-74 232
Msa0485240 AT1G53660.5 42.449 245 131 5 91 334 1 236 1.83e-58 189
Msa0485240 AT1G53660.2 41.294 201 117 1 5 204 26 226 6.18e-51 170
Msa0485240 AT1G21870.1 23.810 315 230 5 21 330 22 331 1.29e-30 119
Msa0485240 AT3G11320.1 31.757 296 188 5 18 305 15 304 1.62e-30 118
Msa0485240 AT5G05820.1 32.095 296 187 5 18 305 15 304 4.95e-30 117
Msa0485240 AT1G77610.1 24.383 324 232 6 21 336 16 334 4.50e-29 115
Msa0485240 AT3G10290.1 30.392 306 197 8 9 305 53 351 4.23e-27 110
Msa0485240 AT5G04160.1 30.255 314 199 8 3 305 1 305 2.87e-26 106
Msa0485240 AT1G12500.1 28.065 310 211 6 3 305 48 352 1.28e-23 100
Msa0485240 AT1G06470.4 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa0485240 AT1G06470.2 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa0485240 AT1G06470.1 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa0485240 AT1G06470.3 25.000 336 232 9 17 335 78 410 6.60e-23 99.0
Msa0485240 AT2G28315.1 27.187 320 199 13 25 333 22 318 7.75e-19 86.7
Msa0485240 AT2G28315.2 28.276 290 181 12 25 303 22 295 2.23e-17 82.0
Msa0485240 AT2G30460.1 27.941 272 165 9 83 336 73 331 9.24e-15 74.7
Msa0485240 AT2G30460.2 27.941 272 165 9 83 336 73 331 9.24e-15 74.7
Msa0485240 AT2G30460.3 27.941 272 165 9 83 336 52 310 9.85e-15 74.7
Msa0485240 AT2G30460.6 27.941 272 165 9 83 336 52 310 9.85e-15 74.7
Msa0485240 AT2G30460.5 27.941 272 165 9 83 336 52 310 9.85e-15 74.7
Msa0485240 AT1G06890.4 25.397 315 195 11 42 336 37 331 4.25e-13 70.1
Msa0485240 AT1G06890.3 25.397 315 195 11 42 336 37 331 4.36e-13 69.7
Msa0485240 AT1G06890.2 25.397 315 195 11 42 336 37 331 4.70e-13 69.7
Msa0485240 AT1G06890.1 25.397 315 195 11 42 336 37 331 4.70e-13 69.7
Msa0485240 AT5G33320.1 24.272 309 220 7 4 305 98 399 8.30e-11 63.2

Find 64 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGTTACACTTCAGCTTA+TGG 0.214354 3_4:-2830249 Msa0485240:CDS
CCGATTAATTTGATTGGTTA+TGG 0.225210 3_4:-2829882 Msa0485240:CDS
GGTGTTGCTGTTGCTGCTTA+TGG 0.242108 3_4:-2830293 Msa0485240:CDS
ATTCTCGTGGTCGGTGATTA+AGG 0.249502 3_4:-2829916 Msa0485240:CDS
GTGTTGCTGTTGCTGCTTAT+GGG 0.272371 3_4:-2830292 Msa0485240:CDS
CACTTTACTCGCTTTCGTTA+TGG 0.286530 3_4:-2830466 Msa0485240:CDS
CGATTAATTTGATTGGTTAT+GGG 0.330326 3_4:-2829881 Msa0485240:CDS
TTCGAAGTTGCAGGCTCTTA+AGG 0.341248 3_4:-2829826 Msa0485240:CDS
GCTTTGACTATGAATGTTGC+TGG 0.346970 3_4:-2829966 Msa0485240:CDS
TAGATAAATATACGCAGAAT+TGG 0.353850 3_4:+2830439 None:intergenic
GTTACACCGATTAATTTGAT+TGG 0.366012 3_4:-2829888 Msa0485240:CDS
GGATAACTCAAGTTTCCATT+TGG 0.385544 3_4:-2830069 Msa0485240:CDS
AAGAGAAATGGAAATCATAT+TGG 0.391631 3_4:+2830316 None:intergenic
TTCCGATGGCGTTGTGAAGA+AGG 0.398342 3_4:-2830726 Msa0485240:CDS
GGGAAGCTAAATTTGATACT+TGG 0.404187 3_4:-2830271 Msa0485240:CDS
TTATAATCATTCGAAGTTGC+AGG 0.406175 3_4:-2829835 Msa0485240:CDS
GAATGTTGCTGGGGTTGTTA+AGG 0.411142 3_4:-2829955 Msa0485240:CDS
AGATCGAGTTGAATCAGTTC+TGG 0.413437 3_4:+2829706 None:intergenic
AATATGATTTCCATTTCTCT+TGG 0.417528 3_4:-2830314 Msa0485240:CDS
CATACACCTACGTCGCAATC+TGG 0.421498 3_4:-2830694 Msa0485240:CDS
CCTGTTGCTGTTTATTCGAT+TGG 0.427774 3_4:-2830380 Msa0485240:CDS
ATGTAATACAACGAAGTAAT+CGG 0.430025 3_4:+2830155 None:intergenic
AACAGCAACACCAAGAGAAA+TGG 0.430794 3_4:+2830304 None:intergenic
CCATAACCAATCAAATTAAT+CGG 0.432294 3_4:+2829882 None:intergenic
TTACATTGCGCCATGTTGTT+TGG 0.446571 3_4:-2830138 Msa0485240:CDS
TGAATCATGGTTAGAGAGAT+CGG 0.453928 3_4:+2830599 None:intergenic
CTTTGACTATGAATGTTGCT+GGG 0.457141 3_4:-2829965 Msa0485240:CDS
CTCAAATCTGTTGTTCCAAT+CGG 0.464601 3_4:-2830491 Msa0485240:CDS
AGATCGCGTGACATTGAAAC+AGG 0.469171 3_4:+2830518 None:intergenic
GGAAGCTAAATTTGATACTT+GGG 0.472356 3_4:-2830270 Msa0485240:CDS
TAGATCGTAAGATGTACAAT+TGG 0.478800 3_4:-2830628 Msa0485240:CDS
TTGAGCCTTCTTCTGCGTCT+CGG 0.479012 3_4:+2829800 None:intergenic
CCAATCGAATAAACAGCAAC+AGG 0.480862 3_4:+2830380 None:intergenic
TAATTTGATTGGTTATGGGT+TGG 0.488621 3_4:-2829877 Msa0485240:CDS
TTGCTGGGGTTGTTAAGGAT+TGG 0.496578 3_4:-2829950 Msa0485240:CDS
GTATTTGTTGTAAACGATAA+CGG 0.498137 3_4:+2830655 None:intergenic
AGCGAGTAAAGTGCACCGAT+TGG 0.499200 3_4:+2830476 None:intergenic
TGAAGAGGCTGGAAGGTTGT+TGG 0.507877 3_4:-2829769 Msa0485240:CDS
GGCTTCCGAGACGCAGAAGA+AGG 0.521970 3_4:-2829805 Msa0485240:CDS
AGGTTGTTGGAACAGAGAGA+TGG 0.527055 3_4:-2829756 Msa0485240:CDS
CAGAGAGATGGAGAAGGGAC+TGG 0.531231 3_4:-2829744 Msa0485240:CDS
GAATCATGGTTAGAGAGATC+GGG 0.533528 3_4:+2830600 None:intergenic
CAACAGAGTGATGAAGAGGC+TGG 0.548342 3_4:-2829780 Msa0485240:CDS
GTTGATTGCATTCTCGTGGT+CGG 0.553496 3_4:-2829925 Msa0485240:CDS
TGTTGAGTATCCTTCGTTGA+GGG 0.554979 3_4:-2830090 Msa0485240:CDS
GGCTCAACAGAGTGATGAAG+AGG 0.559642 3_4:-2829784 Msa0485240:CDS
TTGTTGAGTATCCTTCGTTG+AGG 0.563149 3_4:-2830091 Msa0485240:CDS
ATGGTTAGAGAGATCGGGTA+AGG 0.564381 3_4:+2830605 None:intergenic
TGTTGCTGTTGCTGCTTATG+GGG 0.565614 3_4:-2830291 Msa0485240:CDS
GAGATGGAGAAGGGACTGGA+AGG 0.571557 3_4:-2829740 Msa0485240:CDS
AACCTTCTTCACAACGCCAT+CGG 0.572106 3_4:+2830724 None:intergenic
CTCTCTAACCATGATTCACA+TGG 0.588163 3_4:-2830594 Msa0485240:CDS
TTTGTTGGTTGGGAAGACGT+CGG 0.592329 3_4:-2829988 Msa0485240:CDS
TTGGAACAGAGAGATGGAGA+AGG 0.602800 3_4:-2829750 Msa0485240:CDS
AGAGTGATGAAGAGGCTGGA+AGG 0.603959 3_4:-2829776 Msa0485240:CDS
GGTTGTTGATTGCATTCTCG+TGG 0.604485 3_4:-2829929 Msa0485240:CDS
GAAGATCCAGATTGCGACGT+AGG 0.612548 3_4:+2830688 None:intergenic
GAAGCTAAATTTGATACTTG+GGG 0.628264 3_4:-2830269 Msa0485240:CDS
TGGAACAGAGAGATGGAGAA+GGG 0.630504 3_4:-2829749 Msa0485240:CDS
GGATACTCAACAATAAGCCA+AGG 0.631347 3_4:+2830101 None:intergenic
AAACGATAACGGTGAAGCTG+AGG 0.632551 3_4:+2830666 None:intergenic
TTGCGACGTAGGTGTATGAG+AGG 0.648256 3_4:+2830699 None:intergenic
TTTGACTATGAATGTTGCTG+GGG 0.655153 3_4:-2829964 Msa0485240:CDS
CTTGAGTTATCCCTCAACGA+AGG 0.699678 3_4:+2830080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTGTTGTAAACGATAA+CGG + chr3_4:2829801-2829820 None:intergenic 25.0%
! TAGATAAATATACGCAGAAT+TGG + chr3_4:2830017-2830036 None:intergenic 25.0%
!!! AGGTTTTAAGAATGAAACTA+TGG - chr3_4:2830114-2830133 Msa0485240:CDS 25.0%
! AAGAGAAATGGAAATCATAT+TGG + chr3_4:2830140-2830159 None:intergenic 25.0%
! AATATGATTTCCATTTCTCT+TGG - chr3_4:2830139-2830158 Msa0485240:CDS 25.0%
! ATGTAATACAACGAAGTAAT+CGG + chr3_4:2830301-2830320 None:intergenic 25.0%
! CCATAACCAATCAAATTAAT+CGG + chr3_4:2830574-2830593 None:intergenic 25.0%
!! CGATTAATTTGATTGGTTAT+GGG - chr3_4:2830572-2830591 Msa0485240:CDS 25.0%
!!! GTATTTGTTGTAAACGATAA+CGG + chr3_4:2829801-2829820 None:intergenic 25.0%
! TAGATAAATATACGCAGAAT+TGG + chr3_4:2830017-2830036 None:intergenic 25.0%
!!! AGGTTTTAAGAATGAAACTA+TGG - chr3_4:2830114-2830133 Msa0485240:CDS 25.0%
! AAGAGAAATGGAAATCATAT+TGG + chr3_4:2830140-2830159 None:intergenic 25.0%
! AATATGATTTCCATTTCTCT+TGG - chr3_4:2830139-2830158 Msa0485240:CDS 25.0%
! ATGTAATACAACGAAGTAAT+CGG + chr3_4:2830301-2830320 None:intergenic 25.0%
! CCATAACCAATCAAATTAAT+CGG + chr3_4:2830574-2830593 None:intergenic 25.0%
!! CGATTAATTTGATTGGTTAT+GGG - chr3_4:2830572-2830591 Msa0485240:CDS 25.0%
TAGATCGTAAGATGTACAAT+TGG - chr3_4:2829825-2829844 Msa0485240:CDS 30.0%
!!! GGTGTTTTGTTTAAGAAAGA+AGG - chr3_4:2830094-2830113 Msa0485240:CDS 30.0%
GGAAGCTAAATTTGATACTT+GGG - chr3_4:2830183-2830202 Msa0485240:CDS 30.0%
GAAGCTAAATTTGATACTTG+GGG - chr3_4:2830184-2830203 Msa0485240:CDS 30.0%
! TCAGATTTTGCTTAATTCGA+AGG - chr3_4:2830261-2830280 Msa0485240:CDS 30.0%
! CAGATTTTGCTTAATTCGAA+GGG - chr3_4:2830262-2830281 Msa0485240:CDS 30.0%
! AGATTTTGCTTAATTCGAAG+GGG - chr3_4:2830263-2830282 Msa0485240:CDS 30.0%
! ATTTGGATTTCGCGATTTTT+GGG - chr3_4:2830401-2830420 Msa0485240:CDS 30.0%
! GTTACACCGATTAATTTGAT+TGG - chr3_4:2830565-2830584 Msa0485240:CDS 30.0%
! CCGATTAATTTGATTGGTTA+TGG - chr3_4:2830571-2830590 Msa0485240:CDS 30.0%
! TAATTTGATTGGTTATGGGT+TGG - chr3_4:2830576-2830595 Msa0485240:CDS 30.0%
TTATAATCATTCGAAGTTGC+AGG - chr3_4:2830618-2830637 Msa0485240:CDS 30.0%
TAGATCGTAAGATGTACAAT+TGG - chr3_4:2829825-2829844 Msa0485240:CDS 30.0%
!!! GGTGTTTTGTTTAAGAAAGA+AGG - chr3_4:2830094-2830113 Msa0485240:CDS 30.0%
GGAAGCTAAATTTGATACTT+GGG - chr3_4:2830183-2830202 Msa0485240:CDS 30.0%
GAAGCTAAATTTGATACTTG+GGG - chr3_4:2830184-2830203 Msa0485240:CDS 30.0%
! TCAGATTTTGCTTAATTCGA+AGG - chr3_4:2830261-2830280 Msa0485240:CDS 30.0%
! CAGATTTTGCTTAATTCGAA+GGG - chr3_4:2830262-2830281 Msa0485240:CDS 30.0%
! AGATTTTGCTTAATTCGAAG+GGG - chr3_4:2830263-2830282 Msa0485240:CDS 30.0%
! ATTTGGATTTCGCGATTTTT+GGG - chr3_4:2830401-2830420 Msa0485240:CDS 30.0%
! GTTACACCGATTAATTTGAT+TGG - chr3_4:2830565-2830584 Msa0485240:CDS 30.0%
! CCGATTAATTTGATTGGTTA+TGG - chr3_4:2830571-2830590 Msa0485240:CDS 30.0%
! TAATTTGATTGGTTATGGGT+TGG - chr3_4:2830576-2830595 Msa0485240:CDS 30.0%
TTATAATCATTCGAAGTTGC+AGG - chr3_4:2830618-2830637 Msa0485240:CDS 30.0%
TGAATCATGGTTAGAGAGAT+CGG + chr3_4:2829857-2829876 None:intergenic 35.0%
ACAAAAAGCCATGTGAATCA+TGG + chr3_4:2829870-2829889 None:intergenic 35.0%
CTCAAATCTGTTGTTCCAAT+CGG - chr3_4:2829962-2829981 Msa0485240:CDS 35.0%
GGGAAGCTAAATTTGATACT+TGG - chr3_4:2830182-2830201 Msa0485240:CDS 35.0%
GACAAAAACACCAAACAACA+TGG + chr3_4:2830328-2830347 None:intergenic 35.0%
GGATAACTCAAGTTTCCATT+TGG - chr3_4:2830384-2830403 Msa0485240:CDS 35.0%
CAAAAATCGCGAAATCCAAA+TGG + chr3_4:2830402-2830421 None:intergenic 35.0%
! CATTTGGATTTCGCGATTTT+TGG - chr3_4:2830400-2830419 Msa0485240:CDS 35.0%
CTTTGACTATGAATGTTGCT+GGG - chr3_4:2830488-2830507 Msa0485240:CDS 35.0%
TTTGACTATGAATGTTGCTG+GGG - chr3_4:2830489-2830508 Msa0485240:CDS 35.0%
TGAATCATGGTTAGAGAGAT+CGG + chr3_4:2829857-2829876 None:intergenic 35.0%
ACAAAAAGCCATGTGAATCA+TGG + chr3_4:2829870-2829889 None:intergenic 35.0%
CTCAAATCTGTTGTTCCAAT+CGG - chr3_4:2829962-2829981 Msa0485240:CDS 35.0%
GGGAAGCTAAATTTGATACT+TGG - chr3_4:2830182-2830201 Msa0485240:CDS 35.0%
GACAAAAACACCAAACAACA+TGG + chr3_4:2830328-2830347 None:intergenic 35.0%
GGATAACTCAAGTTTCCATT+TGG - chr3_4:2830384-2830403 Msa0485240:CDS 35.0%
CAAAAATCGCGAAATCCAAA+TGG + chr3_4:2830402-2830421 None:intergenic 35.0%
! CATTTGGATTTCGCGATTTT+TGG - chr3_4:2830400-2830419 Msa0485240:CDS 35.0%
CTTTGACTATGAATGTTGCT+GGG - chr3_4:2830488-2830507 Msa0485240:CDS 35.0%
TTTGACTATGAATGTTGCTG+GGG - chr3_4:2830489-2830508 Msa0485240:CDS 35.0%
GAATCATGGTTAGAGAGATC+GGG + chr3_4:2829856-2829875 None:intergenic 40.0%
CTCTCTAACCATGATTCACA+TGG - chr3_4:2829859-2829878 Msa0485240:CDS 40.0%
CACTTTACTCGCTTTCGTTA+TGG - chr3_4:2829987-2830006 Msa0485240:CDS 40.0%
CCAATCGAATAAACAGCAAC+AGG + chr3_4:2830076-2830095 None:intergenic 40.0%
!! CCTGTTGCTGTTTATTCGAT+TGG - chr3_4:2830073-2830092 Msa0485240:CDS 40.0%
AACAGCAACACCAAGAGAAA+TGG + chr3_4:2830152-2830171 None:intergenic 40.0%
!!! TGCTTTTGAAGCAACACGTT+TGG - chr3_4:2830231-2830250 Msa0485240:CDS 40.0%
TTACATTGCGCCATGTTGTT+TGG - chr3_4:2830315-2830334 Msa0485240:CDS 40.0%
!! TGGTGTTTTTGTCTGTTCCT+TGG - chr3_4:2830335-2830354 Msa0485240:CDS 40.0%
GGATACTCAACAATAAGCCA+AGG + chr3_4:2830355-2830374 None:intergenic 40.0%
TTGTTGAGTATCCTTCGTTG+AGG - chr3_4:2830362-2830381 Msa0485240:CDS 40.0%
TGTTGAGTATCCTTCGTTGA+GGG - chr3_4:2830363-2830382 Msa0485240:CDS 40.0%
!! GAATCTTGCCGTGTTTTTGT+TGG - chr3_4:2830450-2830469 Msa0485240:CDS 40.0%
!! TTGCCGTGTTTTTGTTGGTT+GGG - chr3_4:2830455-2830474 Msa0485240:CDS 40.0%
CTTCCCAACCAACAAAAACA+CGG + chr3_4:2830461-2830480 None:intergenic 40.0%
GCTTTGACTATGAATGTTGC+TGG - chr3_4:2830487-2830506 Msa0485240:CDS 40.0%
GAATCATGGTTAGAGAGATC+GGG + chr3_4:2829856-2829875 None:intergenic 40.0%
CTCTCTAACCATGATTCACA+TGG - chr3_4:2829859-2829878 Msa0485240:CDS 40.0%
CACTTTACTCGCTTTCGTTA+TGG - chr3_4:2829987-2830006 Msa0485240:CDS 40.0%
CCAATCGAATAAACAGCAAC+AGG + chr3_4:2830076-2830095 None:intergenic 40.0%
!! CCTGTTGCTGTTTATTCGAT+TGG - chr3_4:2830073-2830092 Msa0485240:CDS 40.0%
AACAGCAACACCAAGAGAAA+TGG + chr3_4:2830152-2830171 None:intergenic 40.0%
!!! TGCTTTTGAAGCAACACGTT+TGG - chr3_4:2830231-2830250 Msa0485240:CDS 40.0%
TTACATTGCGCCATGTTGTT+TGG - chr3_4:2830315-2830334 Msa0485240:CDS 40.0%
!! TGGTGTTTTTGTCTGTTCCT+TGG - chr3_4:2830335-2830354 Msa0485240:CDS 40.0%
GGATACTCAACAATAAGCCA+AGG + chr3_4:2830355-2830374 None:intergenic 40.0%
TTGTTGAGTATCCTTCGTTG+AGG - chr3_4:2830362-2830381 Msa0485240:CDS 40.0%
TGTTGAGTATCCTTCGTTGA+GGG - chr3_4:2830363-2830382 Msa0485240:CDS 40.0%
!! GAATCTTGCCGTGTTTTTGT+TGG - chr3_4:2830450-2830469 Msa0485240:CDS 40.0%
!! TTGCCGTGTTTTTGTTGGTT+GGG - chr3_4:2830455-2830474 Msa0485240:CDS 40.0%
CTTCCCAACCAACAAAAACA+CGG + chr3_4:2830461-2830480 None:intergenic 40.0%
GCTTTGACTATGAATGTTGC+TGG - chr3_4:2830487-2830506 Msa0485240:CDS 40.0%
AACCTTCTTCACAACGCCAT+CGG + chr3_4:2829732-2829751 None:intergenic 45.0%
! AAACGATAACGGTGAAGCTG+AGG + chr3_4:2829790-2829809 None:intergenic 45.0%
ATGGTTAGAGAGATCGGGTA+AGG + chr3_4:2829851-2829870 None:intergenic 45.0%
AGATCGCGTGACATTGAAAC+AGG + chr3_4:2829938-2829957 None:intergenic 45.0%
! GTGTTGCTGTTGCTGCTTAT+GGG - chr3_4:2830161-2830180 Msa0485240:CDS 45.0%
! TGTTGCTGTTGCTGCTTATG+GGG - chr3_4:2830162-2830181 Msa0485240:CDS 45.0%
! GGGTGTTACACTTCAGCTTA+TGG - chr3_4:2830204-2830223 Msa0485240:CDS 45.0%
CTTGAGTTATCCCTCAACGA+AGG + chr3_4:2830376-2830395 None:intergenic 45.0%
!! CTTGCCGTGTTTTTGTTGGT+TGG - chr3_4:2830454-2830473 Msa0485240:CDS 45.0%
! TTTGTTGGTTGGGAAGACGT+CGG - chr3_4:2830465-2830484 Msa0485240:CDS 45.0%
GAATGTTGCTGGGGTTGTTA+AGG - chr3_4:2830498-2830517 Msa0485240:CDS 45.0%
TTGCTGGGGTTGTTAAGGAT+TGG - chr3_4:2830503-2830522 Msa0485240:CDS 45.0%
! GGTTGTTGATTGCATTCTCG+TGG - chr3_4:2830524-2830543 Msa0485240:CDS 45.0%
GTTGATTGCATTCTCGTGGT+CGG - chr3_4:2830528-2830547 Msa0485240:CDS 45.0%
ATTCTCGTGGTCGGTGATTA+AGG - chr3_4:2830537-2830556 Msa0485240:CDS 45.0%
!!! TGGTTATGGGTTGGCGTTTT+TGG - chr3_4:2830585-2830604 Msa0485240:CDS 45.0%
!!! GGTTATGGGTTGGCGTTTTT+GGG - chr3_4:2830586-2830605 Msa0485240:CDS 45.0%
!!! GTTATGGGTTGGCGTTTTTG+GGG - chr3_4:2830587-2830606 Msa0485240:CDS 45.0%
!!! TTATGGGTTGGCGTTTTTGG+GGG - chr3_4:2830588-2830607 Msa0485240:CDS 45.0%
TTCGAAGTTGCAGGCTCTTA+AGG - chr3_4:2830627-2830646 Msa0485240:CDS 45.0%
AGGTTGTTGGAACAGAGAGA+TGG - chr3_4:2830697-2830716 Msa0485240:CDS 45.0%
TTGGAACAGAGAGATGGAGA+AGG - chr3_4:2830703-2830722 Msa0485240:CDS 45.0%
TGGAACAGAGAGATGGAGAA+GGG - chr3_4:2830704-2830723 Msa0485240:CDS 45.0%
AACCTTCTTCACAACGCCAT+CGG + chr3_4:2829732-2829751 None:intergenic 45.0%
! AAACGATAACGGTGAAGCTG+AGG + chr3_4:2829790-2829809 None:intergenic 45.0%
ATGGTTAGAGAGATCGGGTA+AGG + chr3_4:2829851-2829870 None:intergenic 45.0%
AGATCGCGTGACATTGAAAC+AGG + chr3_4:2829938-2829957 None:intergenic 45.0%
! GTGTTGCTGTTGCTGCTTAT+GGG - chr3_4:2830161-2830180 Msa0485240:CDS 45.0%
! TGTTGCTGTTGCTGCTTATG+GGG - chr3_4:2830162-2830181 Msa0485240:CDS 45.0%
! GGGTGTTACACTTCAGCTTA+TGG - chr3_4:2830204-2830223 Msa0485240:CDS 45.0%
CTTGAGTTATCCCTCAACGA+AGG + chr3_4:2830376-2830395 None:intergenic 45.0%
!! CTTGCCGTGTTTTTGTTGGT+TGG - chr3_4:2830454-2830473 Msa0485240:CDS 45.0%
! TTTGTTGGTTGGGAAGACGT+CGG - chr3_4:2830465-2830484 Msa0485240:CDS 45.0%
GAATGTTGCTGGGGTTGTTA+AGG - chr3_4:2830498-2830517 Msa0485240:CDS 45.0%
TTGCTGGGGTTGTTAAGGAT+TGG - chr3_4:2830503-2830522 Msa0485240:CDS 45.0%
! GGTTGTTGATTGCATTCTCG+TGG - chr3_4:2830524-2830543 Msa0485240:CDS 45.0%
GTTGATTGCATTCTCGTGGT+CGG - chr3_4:2830528-2830547 Msa0485240:CDS 45.0%
ATTCTCGTGGTCGGTGATTA+AGG - chr3_4:2830537-2830556 Msa0485240:CDS 45.0%
!!! TGGTTATGGGTTGGCGTTTT+TGG - chr3_4:2830585-2830604 Msa0485240:CDS 45.0%
!!! GGTTATGGGTTGGCGTTTTT+GGG - chr3_4:2830586-2830605 Msa0485240:CDS 45.0%
!!! GTTATGGGTTGGCGTTTTTG+GGG - chr3_4:2830587-2830606 Msa0485240:CDS 45.0%
!!! TTATGGGTTGGCGTTTTTGG+GGG - chr3_4:2830588-2830607 Msa0485240:CDS 45.0%
TTCGAAGTTGCAGGCTCTTA+AGG - chr3_4:2830627-2830646 Msa0485240:CDS 45.0%
AGGTTGTTGGAACAGAGAGA+TGG - chr3_4:2830697-2830716 Msa0485240:CDS 45.0%
TTGGAACAGAGAGATGGAGA+AGG - chr3_4:2830703-2830722 Msa0485240:CDS 45.0%
TGGAACAGAGAGATGGAGAA+GGG - chr3_4:2830704-2830723 Msa0485240:CDS 45.0%
TTCCGATGGCGTTGTGAAGA+AGG - chr3_4:2829727-2829746 Msa0485240:CDS 50.0%
TTGCGACGTAGGTGTATGAG+AGG + chr3_4:2829757-2829776 None:intergenic 50.0%
CATACACCTACGTCGCAATC+TGG - chr3_4:2829759-2829778 Msa0485240:CDS 50.0%
GAAGATCCAGATTGCGACGT+AGG + chr3_4:2829768-2829787 None:intergenic 50.0%
! AGCGAGTAAAGTGCACCGAT+TGG + chr3_4:2829980-2829999 None:intergenic 50.0%
!! GGTGTTGCTGTTGCTGCTTA+TGG - chr3_4:2830160-2830179 Msa0485240:CDS 50.0%
TTGAGCCTTCTTCTGCGTCT+CGG + chr3_4:2830656-2830675 None:intergenic 50.0%
GGCTCAACAGAGTGATGAAG+AGG - chr3_4:2830669-2830688 Msa0485240:CDS 50.0%
CAACAGAGTGATGAAGAGGC+TGG - chr3_4:2830673-2830692 Msa0485240:CDS 50.0%
AGAGTGATGAAGAGGCTGGA+AGG - chr3_4:2830677-2830696 Msa0485240:CDS 50.0%
TGAAGAGGCTGGAAGGTTGT+TGG - chr3_4:2830684-2830703 Msa0485240:CDS 50.0%
TTCCGATGGCGTTGTGAAGA+AGG - chr3_4:2829727-2829746 Msa0485240:CDS 50.0%
TTGCGACGTAGGTGTATGAG+AGG + chr3_4:2829757-2829776 None:intergenic 50.0%
CATACACCTACGTCGCAATC+TGG - chr3_4:2829759-2829778 Msa0485240:CDS 50.0%
GAAGATCCAGATTGCGACGT+AGG + chr3_4:2829768-2829787 None:intergenic 50.0%
! AGCGAGTAAAGTGCACCGAT+TGG + chr3_4:2829980-2829999 None:intergenic 50.0%
!! GGTGTTGCTGTTGCTGCTTA+TGG - chr3_4:2830160-2830179 Msa0485240:CDS 50.0%
TTGAGCCTTCTTCTGCGTCT+CGG + chr3_4:2830656-2830675 None:intergenic 50.0%
GGCTCAACAGAGTGATGAAG+AGG - chr3_4:2830669-2830688 Msa0485240:CDS 50.0%
CAACAGAGTGATGAAGAGGC+TGG - chr3_4:2830673-2830692 Msa0485240:CDS 50.0%
AGAGTGATGAAGAGGCTGGA+AGG - chr3_4:2830677-2830696 Msa0485240:CDS 50.0%
TGAAGAGGCTGGAAGGTTGT+TGG - chr3_4:2830684-2830703 Msa0485240:CDS 50.0%
CAGAGAGATGGAGAAGGGAC+TGG - chr3_4:2830709-2830728 Msa0485240:CDS 55.0%
GAGATGGAGAAGGGACTGGA+AGG - chr3_4:2830713-2830732 Msa0485240:CDS 55.0%
CAGAGAGATGGAGAAGGGAC+TGG - chr3_4:2830709-2830728 Msa0485240:CDS 55.0%
GAGATGGAGAAGGGACTGGA+AGG - chr3_4:2830713-2830732 Msa0485240:CDS 55.0%
GGCTTCCGAGACGCAGAAGA+AGG - chr3_4:2830648-2830667 Msa0485240:CDS 60.0%
GGCTTCCGAGACGCAGAAGA+AGG - chr3_4:2830648-2830667 Msa0485240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2829719 2830756 2829719 ID=Msa0485240;Name=Msa0485240
chr3_4 mRNA 2829719 2830756 2829719 ID=Msa0485240-mRNA-1;Parent=Msa0485240;Name=Msa0485240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|345
chr3_4 exon 2829719 2830756 2829719 ID=Msa0485240-mRNA-1:exon:980;Parent=Msa0485240-mRNA-1
chr3_4 CDS 2829719 2830756 2829719 ID=Msa0485240-mRNA-1:cds;Parent=Msa0485240-mRNA-1
Gene Sequence

>Msa0485240

ATGGCGGTTTCCGATGGCGTTGTGAAGAAGGTTATCCTCTCATACACCTACGTCGCAATCTGGATCTTCCTCAGCTTCACCGTTATCGTTTACAACAAATACATCTTAGATCGTAAGATGTACAATTGGCCTTACCCGATCTCTCTAACCATGATTCACATGGCTTTTTGTTCTTCACTCGCTTACGTTCTCGTTCGTGTTTTCAAGCTTGTTGAACCTGTTTCAATGTCACGCGATCTGTATCTCAAATCTGTTGTTCCAATCGGTGCACTTTACTCGCTTTCGTTATGGTTTTCCAATTCTGCGTATATTTATCTATCTGTTTCGTTTATTCAGATGCTGAAAGCGCTTATGCCTGTTGCTGTTTATTCGATTGGTGTTTTGTTTAAGAAAGAAGGTTTTAAGAATGAAACTATGGCCAATATGATTTCCATTTCTCTTGGTGTTGCTGTTGCTGCTTATGGGGAAGCTAAATTTGATACTTGGGGTGTTACACTTCAGCTTATGGCTGTTGCTTTTGAAGCAACACGTTTGGTTTTGATTCAGATTTTGCTTAATTCGAAGGGGATTTCGTTGAATCCGATTACTTCGTTGTATTACATTGCGCCATGTTGTTTGGTGTTTTTGTCTGTTCCTTGGCTTATTGTTGAGTATCCTTCGTTGAGGGATAACTCAAGTTTCCATTTGGATTTCGCGATTTTTGGGACAAATTCGCTATGTGCTTTTGCTTTGAATCTTGCCGTGTTTTTGTTGGTTGGGAAGACGTCGGCTTTGACTATGAATGTTGCTGGGGTTGTTAAGGATTGGTTGTTGATTGCATTCTCGTGGTCGGTGATTAAGGATACTGTTACACCGATTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCGAAGTTGCAGGCTCTTAAGGCTTCCGAGACGCAGAAGAAGGCTCAACAGAGTGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGATGGAGAAGGGACTGGAAGGAAGAGCGACAGCCAGAACTGA

Protein sequence

>Msa0485240

MAVSDGVVKKVILSYTYVAIWIFLSFTVIVYNKYILDRKMYNWPYPISLTMIHMAFCSSLAYVLVRVFKLVEPVSMSRDLYLKSVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVLFKKEGFKNETMANMISISLGVAVAAYGEAKFDTWGVTLQLMAVAFEATRLVLIQILLNSKGISLNPITSLYYIAPCCLVFLSVPWLIVEYPSLRDNSSFHLDFAIFGTNSLCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLIGYGLAFLGVAYYNHSKLQALKASETQKKAQQSDEEAGRLLEQRDGEGTGRKSDSQN*