Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841850 | XP_003623905.2 | 87.746 | 457 | 38 | 4 | 1 | 456 | 1 | 440 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841850 | G7L3K3 | 87.746 | 457 | 38 | 4 | 1 | 456 | 1 | 440 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720730 | Msa0841850 | 0.901702 | 2.049946e-78 | -8.615850e-47 |
| Msa0761300 | Msa0841850 | 0.858611 | 7.316630e-63 | -8.615850e-47 |
| Msa0504210 | Msa0841850 | 0.807222 | 5.617503e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841850 | MtrunA17_Chr7g0247241 | 87.746 | 457 | 38 | 4 | 1 | 456 | 1 | 440 | 0.0 | 694 |
| Msa0841850 | MtrunA17_Chr5g0411521 | 81.739 | 460 | 51 | 5 | 1 | 456 | 46 | 476 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841850 | AT3G53440.2 | 40.136 | 294 | 139 | 7 | 159 | 445 | 249 | 512 | 3.70e-47 | 170 |
| Msa0841850 | AT3G53440.1 | 40.136 | 294 | 139 | 7 | 159 | 445 | 249 | 512 | 3.70e-47 | 170 |
Find 112 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATCAATTAAGATTT+AGG | 0.116714 | 5_4:+18625179 | Msa0841850:CDS |
| CGGAACTTGATCGCTCAAAT+TGG | 0.204301 | 5_4:-18621509 | None:intergenic |
| TCCAAACTTCTATTGTTATA+TGG | 0.221830 | 5_4:+18625604 | Msa0841850:three_prime_UTR |
| CAAAACCTAGTCCTCATTTC+TGG | 0.236228 | 5_4:+18621908 | Msa0841850:CDS |
| GAGATTGAAGGTGGAGTAGA+AGG | 0.245379 | 5_4:+18621727 | Msa0841850:CDS |
| TTTGTTGTAGATTTGGGTTT+TGG | 0.250049 | 5_4:-18621436 | None:intergenic |
| TGTCAATCAATTAAGATTTA+GGG | 0.297311 | 5_4:+18625180 | Msa0841850:CDS |
| CTGGAAGAACGTTTCGAAAC+TGG | 0.311757 | 5_4:+18621927 | Msa0841850:CDS |
| TTCTGAGTAACAATGCTCTT+TGG | 0.320344 | 5_4:-18624854 | None:intergenic |
| TGTCGCCCATGAAATTGATT+TGG | 0.322977 | 5_4:-18625348 | None:intergenic |
| AAGTCTCTTTCTAGATTTAG+TGG | 0.343248 | 5_4:+18625082 | Msa0841850:CDS |
| ATCTTTCATTGCAAATTTGT+AGG | 0.343532 | 5_4:-18625036 | None:intergenic |
| GATGTTAAAGTGAGTGAATT+TGG | 0.353800 | 5_4:+18621568 | Msa0841850:CDS |
| GCCATATAACAATAGAAGTT+TGG | 0.354987 | 5_4:-18625605 | None:intergenic |
| GCAATCCCAAATCAATTTCA+TGG | 0.362655 | 5_4:+18625342 | Msa0841850:CDS |
| GTCGCCCATGAAATTGATTT+GGG | 0.364937 | 5_4:-18625347 | None:intergenic |
| AAAGTTGATCAAAATCATAA+AGG | 0.382393 | 5_4:+18624908 | Msa0841850:CDS |
| CAAAATCTGTTGCAGGTACC+TGG | 0.382661 | 5_4:+18624653 | Msa0841850:intron |
| TCTAGATTTAGTGGCTCATC+AGG | 0.392797 | 5_4:+18625091 | Msa0841850:CDS |
| AAGTTGATCAAAATCATAAA+GGG | 0.398649 | 5_4:+18624909 | Msa0841850:CDS |
| TTCAGATATACATTTAGGTT+GGG | 0.405073 | 5_4:+18625639 | Msa0841850:three_prime_UTR |
| GGTGATCTTCGTGGGGTGCC+AGG | 0.414139 | 5_4:-18621373 | None:intergenic |
| AATTAAGATTTAGGGACCTT+AGG | 0.417162 | 5_4:+18625188 | Msa0841850:CDS |
| ACGACAGTGGGGTTTCTGTT+TGG | 0.423200 | 5_4:-18621343 | None:intergenic |
| TGGTTGAAGGTGGTAGAAAA+AGG | 0.424066 | 5_4:+18621656 | Msa0841850:CDS |
| GAAAAGAGAAGAAAAGTAGC+GGG | 0.430036 | 5_4:+18621626 | Msa0841850:CDS |
| TATCAAGATCCAAAACCGTT+AGG | 0.434211 | 5_4:+18621473 | Msa0841850:CDS |
| TTTCAGATATACATTTAGGT+TGG | 0.436895 | 5_4:+18625638 | Msa0841850:three_prime_UTR |
| GTGGGTATGAGCAGTTTACT+TGG | 0.440203 | 5_4:-18624797 | None:intergenic |
| GGAGAAGAGCAGCATCTTCA+AGG | 0.442712 | 5_4:+18625209 | Msa0841850:CDS |
| AAGGTGGAGTAGAAGGGAAA+AGG | 0.444952 | 5_4:+18621734 | Msa0841850:CDS |
| GGAACTTGATCGCTCAAATT+GGG | 0.454245 | 5_4:-18621508 | None:intergenic |
| GTGGACTAAGGAACAAGAAT+TGG | 0.455229 | 5_4:+18621861 | Msa0841850:CDS |
| AATGCTACATCTACAAAACT+TGG | 0.459493 | 5_4:-18625536 | None:intergenic |
| AAGCAACAAAAGGAAAATCA+AGG | 0.462563 | 5_4:+18625010 | Msa0841850:CDS |
| CCCACTGTCGTTTACCCACC+TGG | 0.474091 | 5_4:+18621355 | Msa0841850:CDS |
| CTCAATGTCAGCCTCGATCA+AGG | 0.480704 | 5_4:+18624729 | Msa0841850:CDS |
| CGAGTCTCGGTGATCTTCGT+GGG | 0.488493 | 5_4:-18621381 | None:intergenic |
| GAAACGTTCTTCCAGAAATG+AGG | 0.491137 | 5_4:-18621919 | None:intergenic |
| ATCAAGATCCAAAACCGTTA+GGG | 0.491826 | 5_4:+18621474 | Msa0841850:CDS |
| CGATGCTGGTGGTGAAATAG+TGG | 0.492076 | 5_4:+18621762 | Msa0841850:CDS |
| GAGATATTGAGAATTGATGA+AGG | 0.499568 | 5_4:-18624775 | None:intergenic |
| AAGATGCTGCTCTTCTCCTA+AGG | 0.500545 | 5_4:-18625204 | None:intergenic |
| ATCTTCGTGGGGTGCCAGGT+GGG | 0.501330 | 5_4:-18621369 | None:intergenic |
| TAAAGCAGCAAAAGTTGCAT+TGG | 0.501844 | 5_4:+18625285 | Msa0841850:CDS |
| AGAAGAAAGCACGGTGGTGA+TGG | 0.502654 | 5_4:+18621679 | Msa0841850:CDS |
| TTGTACTCCAAAGCAACAAA+AGG | 0.506093 | 5_4:+18625000 | Msa0841850:CDS |
| TTGCCAACCTTCTTTCCAGT+GGG | 0.512778 | 5_4:-18624815 | None:intergenic |
| GCTCATACCCACTGGAAAGA+AGG | 0.513723 | 5_4:+18624808 | Msa0841850:CDS |
| CAATCTTGTTTAGACTTCCC+AGG | 0.515115 | 5_4:-18624671 | None:intergenic |
| ACGAGTCTCGGTGATCTTCG+TGG | 0.516869 | 5_4:-18621382 | None:intergenic |
| GATCTTCGTGGGGTGCCAGG+TGG | 0.516975 | 5_4:-18621370 | None:intergenic |
| CCAGGTGGGTAAACGACAGT+GGG | 0.518221 | 5_4:-18621355 | None:intergenic |
| TTTACTTGCTTTAGCACAGG+TGG | 0.520137 | 5_4:-18625133 | None:intergenic |
| GGGAAAAGGAAGCACGATGC+TGG | 0.520506 | 5_4:+18621748 | Msa0841850:CDS |
| AGGAAGAGAAAGCGCGGTGG+TGG | 0.525493 | 5_4:+18621823 | Msa0841850:CDS |
| AAGAAAGAAGAGATTGAAGG+TGG | 0.529397 | 5_4:+18621718 | Msa0841850:CDS |
| AATAGTGGAAGAGTTGAGGA+AGG | 0.535399 | 5_4:+18621777 | Msa0841850:CDS |
| TTTGCCAACCTTCTTTCCAG+TGG | 0.543425 | 5_4:-18624816 | None:intergenic |
| GGAAAAGAGAAGAAAAGTAG+CGG | 0.543653 | 5_4:+18621625 | Msa0841850:CDS |
| AGGAAGAAAGAAGAGATTGA+AGG | 0.543684 | 5_4:+18621715 | Msa0841850:CDS |
| TAATTGTCTTGTATCCGTCT+AGG | 0.544557 | 5_4:+18625683 | Msa0841850:three_prime_UTR |
| TCTGTAGCTGGAGAAGGAAA+AGG | 0.546804 | 5_4:+18625241 | Msa0841850:CDS |
| GTGAAATAGTGGAAGAGTTG+AGG | 0.549461 | 5_4:+18621773 | Msa0841850:CDS |
| AGATTGAAGGTGGAGTAGAA+GGG | 0.553424 | 5_4:+18621728 | Msa0841850:CDS |
| AAAAGAGAAGAAAAGTAGCG+GGG | 0.557669 | 5_4:+18621627 | Msa0841850:CDS |
| ATCAAGTTCCGTCGCTTAGA+CGG | 0.558259 | 5_4:+18621521 | Msa0841850:CDS |
| GCACGGTGGTGATGGAATTG+AGG | 0.558489 | 5_4:+18621687 | Msa0841850:CDS |
| TTCTTCCAGAAATGAGGACT+AGG | 0.561243 | 5_4:-18621913 | None:intergenic |
| CAATCCCAAATCAATTTCAT+GGG | 0.561849 | 5_4:+18625343 | Msa0841850:CDS |
| AAGTTGAATGTGGTGTGAAA+AGG | 0.575392 | 5_4:+18621803 | Msa0841850:CDS |
| GTGATGGAATTGAGGAAGGG+AGG | 0.575565 | 5_4:+18621695 | Msa0841850:CDS |
| ATTGCCTTTGCCCTTGATCG+AGG | 0.578198 | 5_4:-18624740 | None:intergenic |
| ATGCTACATCTACAAAACTT+GGG | 0.581912 | 5_4:-18625535 | None:intergenic |
| GGTGGTGATGGAATTGAGGA+AGG | 0.582281 | 5_4:+18621691 | Msa0841850:CDS |
| GCCAGGTGGGTAAACGACAG+TGG | 0.583014 | 5_4:-18621356 | None:intergenic |
| ATACCCACTGGAAAGAAGGT+TGG | 0.583152 | 5_4:+18624812 | Msa0841850:CDS |
| TCATGGAGGAGGACGAGTCT+CGG | 0.584561 | 5_4:-18621394 | None:intergenic |
| ACTTGCACAAGGGTGGACTA+AGG | 0.584727 | 5_4:+18621849 | Msa0841850:CDS |
| GGAGTACAAAGTTCTTGACT+AGG | 0.585184 | 5_4:-18624986 | None:intergenic |
| AAAGAGAAGAAAAGTAGCGG+GGG | 0.585434 | 5_4:+18621628 | Msa0841850:CDS |
| AAAATCTGTTGCAGGTACCT+GGG | 0.591061 | 5_4:+18624654 | Msa0841850:intron |
| AGTAAACTGCTCATACCCAC+TGG | 0.591066 | 5_4:+18624800 | Msa0841850:CDS |
| AAATATACAAAGATCACAGT+AGG | 0.592908 | 5_4:+18625717 | Msa0841850:three_prime_UTR |
| ATTAGCTCGAGAAAAGCCTA+TGG | 0.593019 | 5_4:-18625424 | None:intergenic |
| GAGAAGAGCAGCATCTTCAA+GGG | 0.593581 | 5_4:+18625210 | Msa0841850:CDS |
| AGATATTGAGAATTGATGAA+GGG | 0.597555 | 5_4:-18624774 | None:intergenic |
| TCAATGTCAGCCTCGATCAA+GGG | 0.602031 | 5_4:+18624730 | Msa0841850:CDS |
| AGCAACAAAAGGAAAATCAA+GGG | 0.616741 | 5_4:+18625011 | Msa0841850:CDS |
| CTTGATCGAGGCTGACATTG+AGG | 0.617140 | 5_4:-18624728 | None:intergenic |
| TCAGCCTCGATCAAGGGCAA+AGG | 0.617327 | 5_4:+18624736 | Msa0841850:CDS |
| GATATTGAGAATTGATGAAG+GGG | 0.627652 | 5_4:-18624773 | None:intergenic |
| GAGGACAATGACGATGACAC+TGG | 0.629852 | 5_4:+18625385 | Msa0841850:CDS |
| TTTCAAGCTAAGTACCTAGA+CGG | 0.630475 | 5_4:-18625697 | None:intergenic |
| GTGGTGGTGAACTTGCACAA+GGG | 0.638118 | 5_4:+18621839 | Msa0841850:CDS |
| AAAAGGAAGCACGATGCTGG+TGG | 0.639531 | 5_4:+18621751 | Msa0841850:CDS |
| GGTGGTGGTGAACTTGCACA+AGG | 0.641123 | 5_4:+18621838 | Msa0841850:CDS |
| CGACACTTGTAGTTCTGATG+AGG | 0.643806 | 5_4:+18625366 | Msa0841850:CDS |
| AGCTGAAGATGAAACTCCAT+AGG | 0.645407 | 5_4:+18625408 | Msa0841850:CDS |
| CTAGGAGACCGTCTAAGCGA+CGG | 0.647438 | 5_4:-18621529 | None:intergenic |
| AGTTGATCAAAATCATAAAG+GGG | 0.648404 | 5_4:+18624910 | Msa0841850:CDS |
| GTGGTGAACTTGCACAAGGG+TGG | 0.659011 | 5_4:+18621842 | Msa0841850:CDS |
| GCTGACATTGAGGTGGTGTG+TGG | 0.659104 | 5_4:-18624718 | None:intergenic |
| GAGGTGGTGTGTGGAAGTCG+TGG | 0.661838 | 5_4:-18624709 | None:intergenic |
| GTGGTGATGGAATTGAGGAA+GGG | 0.666606 | 5_4:+18621692 | Msa0841850:CDS |
| AGGAAGGAAGAAGTTGAATG+TGG | 0.671131 | 5_4:+18621793 | Msa0841850:CDS |
| GTGAAAAGGAAGAGAAAGCG+CGG | 0.698757 | 5_4:+18621817 | Msa0841850:CDS |
| GATCGAGGCTGACATTGAGG+TGG | 0.699614 | 5_4:-18624725 | None:intergenic |
| GAGTCTCGGTGATCTTCGTG+GGG | 0.704658 | 5_4:-18621380 | None:intergenic |
| AAAAGGAAGAGAAAGCGCGG+TGG | 0.749477 | 5_4:+18621820 | Msa0841850:CDS |
| CAGGTGGGTAAACGACAGTG+GGG | 0.763697 | 5_4:-18621354 | None:intergenic |
| AAAAGGAGAAGAAAGCACGG+TGG | 0.843786 | 5_4:+18621673 | Msa0841850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTATAATTTCTTGA+TGG | + | chr5_4:18624569-18624588 | Msa0841850:intron | 10.0% |
| !!! | TTTGAATTTTGATATTATGT+TGG | + | chr5_4:18623520-18623539 | Msa0841850:intron | 15.0% |
| !!! | AATTTTTCAGATATACATTT+AGG | + | chr5_4:18625634-18625653 | Msa0841850:three_prime_UTR | 15.0% |
| !! | TGATATGTGACATAATATTA+TGG | + | chr5_4:18622128-18622147 | Msa0841850:intron | 20.0% |
| !! | AATTATAGTGTTTAATCCAA+TGG | + | chr5_4:18622692-18622711 | Msa0841850:intron | 20.0% |
| !!! | CAACTACAAATATTTTTTCA+TGG | - | chr5_4:18622790-18622809 | None:intergenic | 20.0% |
| !!! | TTTTCTCATATAGTTTTTCT+AGG | - | chr5_4:18622900-18622919 | None:intergenic | 20.0% |
| !!! | CTTGGTTTTAAAAAAAACAA+GGG | + | chr5_4:18623360-18623379 | Msa0841850:intron | 20.0% |
| !!! | AATTATCAGTTCTTTTCTTT+AGG | + | chr5_4:18623468-18623487 | Msa0841850:intron | 20.0% |
| !!! | GGATTTAATGTTTTGAATTT+TGG | + | chr5_4:18623489-18623508 | Msa0841850:intron | 20.0% |
| !!! | TTTCGTAATGTTTTGAATTT+TGG | + | chr5_4:18623555-18623574 | Msa0841850:intron | 20.0% |
| !! | TAAAACCTTTCATAAGATTT+AGG | + | chr5_4:18623605-18623624 | Msa0841850:intron | 20.0% |
| !! | TTTAAAGAACAACAAAACAA+AGG | - | chr5_4:18623991-18624010 | None:intergenic | 20.0% |
| !!! | TTAATCCAATAGTTTTATAG+AGG | + | chr5_4:18624169-18624188 | Msa0841850:intron | 20.0% |
| !! | TATATTTAACAGTTACCTTT+AGG | - | chr5_4:18624294-18624313 | None:intergenic | 20.0% |
| !!! | TATTACATTTTTCTTTGTGA+TGG | - | chr5_4:18624552-18624571 | None:intergenic | 20.0% |
| !!! | AAAGTTGATCAAAATCATAA+AGG | + | chr5_4:18624908-18624927 | Msa0841850:CDS | 20.0% |
| !!! | AAGTTGATCAAAATCATAAA+GGG | + | chr5_4:18624909-18624928 | Msa0841850:CDS | 20.0% |
| !! | TTAGTAGAAAAATCAAAGTT+GGG | - | chr5_4:18624956-18624975 | None:intergenic | 20.0% |
| !! | ATTAGTAGAAAAATCAAAGT+TGG | - | chr5_4:18624957-18624976 | None:intergenic | 20.0% |
| !! | ATGTCAATCAATTAAGATTT+AGG | + | chr5_4:18625179-18625198 | Msa0841850:CDS | 20.0% |
| !! | TGTCAATCAATTAAGATTTA+GGG | + | chr5_4:18625180-18625199 | Msa0841850:CDS | 20.0% |
| !!! | TTTAAAGTTTTAGACATTGT+AGG | + | chr5_4:18625485-18625504 | Msa0841850:three_prime_UTR | 20.0% |
| !!! | GATGATTTTGTTGTAGATTT+GGG | - | chr5_4:18621445-18621464 | None:intergenic | 25.0% |
| !!! | AGATGATTTTGTTGTAGATT+TGG | - | chr5_4:18621446-18621465 | None:intergenic | 25.0% |
| !!! | CACTTTAACATCATTTTTCT+TGG | - | chr5_4:18621560-18621579 | None:intergenic | 25.0% |
| ! | TTGAATTATGTGTTTAAACG+AGG | + | chr5_4:18622046-18622065 | Msa0841850:intron | 25.0% |
| ! | AAACTGTGAAGAAGATTAAT+GGG | + | chr5_4:18622092-18622111 | Msa0841850:intron | 25.0% |
| ! | AGACAGTATTTAGTGTTATA+AGG | + | chr5_4:18622171-18622190 | Msa0841850:intron | 25.0% |
| ! | GTATTTAGTGTTATAAGGTT+TGG | + | chr5_4:18622176-18622195 | Msa0841850:intron | 25.0% |
| !! | TTCAGTAAGCTAAATTTGTT+TGG | + | chr5_4:18622231-18622250 | Msa0841850:intron | 25.0% |
| !! | AGTGATTAATTTTGAGCAAA+TGG | - | chr5_4:18622460-18622479 | None:intergenic | 25.0% |
| ! | GAAAAACAACAACAAAACAA+AGG | - | chr5_4:18622523-18622542 | None:intergenic | 25.0% |
| !!! | TAATCCAATGGTTTTATAGA+AGG | + | chr5_4:18622704-18622723 | Msa0841850:intron | 25.0% |
| ! | ATTACTTGTCCAAATTAATG+AGG | + | chr5_4:18622870-18622889 | Msa0841850:intron | 25.0% |
| ! | TATCAAACTCATTAATCACT+AGG | - | chr5_4:18622935-18622954 | None:intergenic | 25.0% |
| ! | AATATATAACAGATCGCTTA+TGG | + | chr5_4:18622962-18622981 | Msa0841850:intron | 25.0% |
| ! | TTTCACGTAAAATGAAATAG+CGG | - | chr5_4:18623327-18623346 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTTTTTAAAACCA+AGG | - | chr5_4:18623362-18623381 | None:intergenic | 25.0% |
| !!! | CCTTGGTTTTAAAAAAAACA+AGG | + | chr5_4:18623359-18623378 | Msa0841850:intron | 25.0% |
| ! | TCCTAAAAGTTATGAAATAG+CGG | + | chr5_4:18623740-18623759 | Msa0841850:intron | 25.0% |
| ! | TCTATGTGTTTATTTCCTAA+AGG | + | chr5_4:18624276-18624295 | Msa0841850:intron | 25.0% |
| ! | CTTTCATGTTTATCGAATAT+CGG | + | chr5_4:18624325-18624344 | Msa0841850:intron | 25.0% |
| ! | ATTTCATAAAGATGTCTGAA+TGG | - | chr5_4:18624477-18624496 | None:intergenic | 25.0% |
| !!! | ACAGAATCACTTTTACTTTT+CGG | + | chr5_4:18624498-18624517 | Msa0841850:intron | 25.0% |
| ! | AGATATTGAGAATTGATGAA+GGG | - | chr5_4:18624777-18624796 | None:intergenic | 25.0% |
| !!! | GATTTTGATCAACTTTAAGA+TGG | - | chr5_4:18624904-18624923 | None:intergenic | 25.0% |
| ! | AGTTGATCAAAATCATAAAG+GGG | + | chr5_4:18624910-18624929 | Msa0841850:CDS | 25.0% |
| ! | ATCTTTCATTGCAAATTTGT+AGG | - | chr5_4:18625039-18625058 | None:intergenic | 25.0% |
| ! | TCCAAACTTCTATTGTTATA+TGG | + | chr5_4:18625604-18625623 | Msa0841850:three_prime_UTR | 25.0% |
| ! | TTTCAGATATACATTTAGGT+TGG | + | chr5_4:18625638-18625657 | Msa0841850:three_prime_UTR | 25.0% |
| !! | TTCAGATATACATTTAGGTT+GGG | + | chr5_4:18625639-18625658 | Msa0841850:three_prime_UTR | 25.0% |
| ! | AAATATACAAAGATCACAGT+AGG | + | chr5_4:18625717-18625736 | Msa0841850:three_prime_UTR | 25.0% |
| !! | TTGTTGTAGATTTGGGTTTT+GGG | - | chr5_4:18621438-18621457 | None:intergenic | 30.0% |
| !! | TTTGTTGTAGATTTGGGTTT+TGG | - | chr5_4:18621439-18621458 | None:intergenic | 30.0% |
| !! | TCATTTTTCTTGGAGAATCT+AGG | - | chr5_4:18621550-18621569 | None:intergenic | 30.0% |
| GATGTTAAAGTGAGTGAATT+TGG | + | chr5_4:18621568-18621587 | Msa0841850:CDS | 30.0% | |
| TCTTACATACAGAGAAAGAT+AGG | - | chr5_4:18621958-18621977 | None:intergenic | 30.0% | |
| GAAACTGTGAAGAAGATTAA+TGG | + | chr5_4:18622091-18622110 | Msa0841850:intron | 30.0% | |
| ACTAAATACTGTCTACTACA+TGG | - | chr5_4:18622165-18622184 | None:intergenic | 30.0% | |
| CAACACTATTAGTAAATAGC+TGG | + | chr5_4:18622294-18622313 | Msa0841850:intron | 30.0% | |
| ! | CTACTAACTAGTTTAAACCT+AGG | - | chr5_4:18622329-18622348 | None:intergenic | 30.0% |
| !!! | ATGACGATTTTGGTTTATCA+CGG | + | chr5_4:18622485-18622504 | Msa0841850:intron | 30.0% |
| ! | CAAAACAAAGGCATAAGATA+AGG | - | chr5_4:18622511-18622530 | None:intergenic | 30.0% |
| AATGCCTTCTATAAAACCAT+TGG | - | chr5_4:18622711-18622730 | None:intergenic | 30.0% | |
| !!! | TTTTATAGAAGGCATTGCAT+AGG | + | chr5_4:18622715-18622734 | Msa0841850:intron | 30.0% |
| !! | TTTATAGAAGGCATTGCATA+GGG | + | chr5_4:18622716-18622735 | Msa0841850:intron | 30.0% |
| !! | AAGTTTTATCCCACTAAGTA+GGG | - | chr5_4:18623011-18623030 | None:intergenic | 30.0% |
| ! | CTCAGTAAGCTAAATTTGTT+CGG | + | chr5_4:18623060-18623079 | Msa0841850:intron | 30.0% |
| TGAAAATACAAGATTCTCCT+TGG | + | chr5_4:18623342-18623361 | Msa0841850:intron | 30.0% | |
| GAGAGAAACTGAAGTTATTA+GGG | - | chr5_4:18623408-18623427 | None:intergenic | 30.0% | |
| AGAGAGAAACTGAAGTTATT+AGG | - | chr5_4:18623409-18623428 | None:intergenic | 30.0% | |
| CTTCCTTCTTTCATTCTTTA+CGG | + | chr5_4:18623427-18623446 | Msa0841850:intron | 30.0% | |
| GAAAAGAACTGATAATTCCA+AGG | - | chr5_4:18623465-18623484 | None:intergenic | 30.0% | |
| !! | CGTAATGTTTTGAATTTTGG+TGG | + | chr5_4:18623558-18623577 | Msa0841850:intron | 30.0% |
| AACCTTTCATAAGATTTAGG+TGG | + | chr5_4:18623608-18623627 | Msa0841850:intron | 30.0% | |
| AACCACCTAAATCTTATGAA+AGG | - | chr5_4:18623613-18623632 | None:intergenic | 30.0% | |
| !! | ACCGCTATTTCATAACTTTT+AGG | - | chr5_4:18623744-18623763 | None:intergenic | 30.0% |
| CTAACCATAGTAGTTAATAG+CGG | - | chr5_4:18623827-18623846 | None:intergenic | 30.0% | |
| GAAGTTTCAAATCTCACAAT+TGG | - | chr5_4:18623895-18623914 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTGAAACTTC+TGG | + | chr5_4:18623895-18623914 | Msa0841850:intron | 30.0% |
| ! | TTGTGAGATTTGAAACTTCT+GGG | + | chr5_4:18623896-18623915 | Msa0841850:intron | 30.0% |
| ! | CAAAACAAAGGCATAAGATA+AGG | - | chr5_4:18622511-18622530 | None:intergenic | 30.0% |
| TTTCAATAACAACACCATGT+TGG | - | chr5_4:18624253-18624272 | None:intergenic | 30.0% | |
| TGTTTATCGAATATCGGATT+TGG | + | chr5_4:18624331-18624350 | Msa0841850:intron | 30.0% | |
| GTGAGCATTTGAATTATTCT+GGG | + | chr5_4:18624409-18624428 | Msa0841850:intron | 30.0% | |
| TGAGCATTTGAATTATTCTG+GGG | + | chr5_4:18624410-18624429 | Msa0841850:intron | 30.0% | |
| TAAGCACATATGCACTTATA+TGG | - | chr5_4:18624606-18624625 | None:intergenic | 30.0% | |
| GATATTGAGAATTGATGAAG+GGG | - | chr5_4:18624776-18624795 | None:intergenic | 30.0% | |
| GAGATATTGAGAATTGATGA+AGG | - | chr5_4:18624778-18624797 | None:intergenic | 30.0% | |
| !! | TGATTTTCCTTTTGTTGCTT+TGG | - | chr5_4:18625010-18625029 | None:intergenic | 30.0% |
| AAGCAACAAAAGGAAAATCA+AGG | + | chr5_4:18625010-18625029 | Msa0841850:CDS | 30.0% | |
| AGCAACAAAAGGAAAATCAA+GGG | + | chr5_4:18625011-18625030 | Msa0841850:CDS | 30.0% | |
| AAGTCTCTTTCTAGATTTAG+TGG | + | chr5_4:18625082-18625101 | Msa0841850:CDS | 30.0% | |
| !!! | TTTTTTACTTGCTTTAGCAC+AGG | - | chr5_4:18625139-18625158 | None:intergenic | 30.0% |
| GCTAAAGCAAGTAAAAAACA+AGG | + | chr5_4:18625141-18625160 | Msa0841850:CDS | 30.0% | |
| AATTAAGATTTAGGGACCTT+AGG | + | chr5_4:18625188-18625207 | Msa0841850:CDS | 30.0% | |
| CAATCCCAAATCAATTTCAT+GGG | + | chr5_4:18625343-18625362 | Msa0841850:CDS | 30.0% | |
| ATGCTACATCTACAAAACTT+GGG | - | chr5_4:18625538-18625557 | None:intergenic | 30.0% | |
| AATGCTACATCTACAAAACT+TGG | - | chr5_4:18625539-18625558 | None:intergenic | 30.0% | |
| GCCATATAACAATAGAAGTT+TGG | - | chr5_4:18625608-18625627 | None:intergenic | 30.0% | |
| !! | TGTTGTAGATTTGGGTTTTG+GGG | - | chr5_4:18621437-18621456 | None:intergenic | 35.0% |
| !!! | AACGGTTTTGGATCTTGATA+TGG | - | chr5_4:18621473-18621492 | None:intergenic | 35.0% |
| TATCAAGATCCAAAACCGTT+AGG | + | chr5_4:18621473-18621492 | Msa0841850:CDS | 35.0% | |
| ATCAAGATCCAAAACCGTTA+GGG | + | chr5_4:18621474-18621493 | Msa0841850:CDS | 35.0% | |
| ! | TTTTCTTACCCTAACGGTTT+TGG | - | chr5_4:18621485-18621504 | None:intergenic | 35.0% |
| ! | TGTTTTTCTCATCGAATCAC+AGG | - | chr5_4:18621596-18621615 | None:intergenic | 35.0% |
| TGTGATTCGATGAGAAAAAC+AGG | + | chr5_4:18621595-18621614 | Msa0841850:CDS | 35.0% | |
| GGAAAAGAGAAGAAAAGTAG+CGG | + | chr5_4:18621625-18621644 | Msa0841850:CDS | 35.0% | |
| GAAAAGAGAAGAAAAGTAGC+GGG | + | chr5_4:18621626-18621645 | Msa0841850:CDS | 35.0% | |
| AAAAGAGAAGAAAAGTAGCG+GGG | + | chr5_4:18621627-18621646 | Msa0841850:CDS | 35.0% | |
| AGAAAAAGGAGAAGAAAGCA+CGG | + | chr5_4:18621670-18621689 | Msa0841850:CDS | 35.0% | |
| AGGAAGAAAGAAGAGATTGA+AGG | + | chr5_4:18621715-18621734 | Msa0841850:CDS | 35.0% | |
| AAGAAAGAAGAGATTGAAGG+TGG | + | chr5_4:18621718-18621737 | Msa0841850:CDS | 35.0% | |
| AAGTTGAATGTGGTGTGAAA+AGG | + | chr5_4:18621803-18621822 | Msa0841850:CDS | 35.0% | |
| ! | TGTGAAGAAGATTAATGGGT+TGG | + | chr5_4:18622096-18622115 | Msa0841850:intron | 35.0% |
| AAATTCGTCAAGTATCAGCA+AGG | + | chr5_4:18622269-18622288 | Msa0841850:intron | 35.0% | |
| AGTAGTGTGTATGTCTAGAA+AGG | + | chr5_4:18622344-18622363 | Msa0841850:intron | 35.0% | |
| ! | TCACTCAAAGATGACGATTT+TGG | + | chr5_4:18622475-18622494 | Msa0841850:intron | 35.0% |
| ! | CTGTTTTCACATGACATTTC+AGG | - | chr5_4:18622569-18622588 | None:intergenic | 35.0% |
| CTAGGTCTTCCTCATTAATT+TGG | - | chr5_4:18622882-18622901 | None:intergenic | 35.0% | |
| !! | CAAGTTTTATCCCACTAAGT+AGG | - | chr5_4:18623012-18623031 | None:intergenic | 35.0% |
| CTACTTAGTGGGATAAAACT+TGG | + | chr5_4:18623010-18623029 | Msa0841850:intron | 35.0% | |
| ! | CGAACAAATTTAGCTTACTG+AGG | - | chr5_4:18623062-18623081 | None:intergenic | 35.0% |
| CAACACAATTGGTAAATAGC+TGG | + | chr5_4:18623116-18623135 | Msa0841850:intron | 35.0% | |
| ! | GCTAACTAGTTTGAACCTAT+AGG | - | chr5_4:18623151-18623170 | None:intergenic | 35.0% |
| GATAATTCCAAGGAGATGAA+AGG | - | chr5_4:18623455-18623474 | None:intergenic | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | chr5_4:18623779-18623798 | Msa0841850:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr5_4:18623820-18623839 | None:intergenic | 35.0% |
| CTATCCGCTATTAACTACTA+TGG | + | chr5_4:18623820-18623839 | Msa0841850:intron | 35.0% | |
| TATGGTTAGCGTGTATAGAA+AGG | + | chr5_4:18623838-18623857 | Msa0841850:intron | 35.0% | |
| TCGTCTTTGAGTGAATCTTT+CGG | - | chr5_4:18623937-18623956 | None:intergenic | 35.0% | |
| TCACTCAAAGACGATAAGTT+TGG | + | chr5_4:18623943-18623962 | Msa0841850:intron | 35.0% | |
| !! | TGATAGAGAAAGCATTGTAG+TGG | + | chr5_4:18624082-18624101 | Msa0841850:intron | 35.0% |
| !! | GATAGAGAAAGCATTGTAGT+GGG | + | chr5_4:18624083-18624102 | Msa0841850:intron | 35.0% |
| TGCAGCCTCTATAAAACTAT+TGG | - | chr5_4:18624177-18624196 | None:intergenic | 35.0% | |
| TAACAACACCATGTTGGAAA+CGG | - | chr5_4:18624247-18624266 | None:intergenic | 35.0% | |
| GGTGAGCATTTGAATTATTC+TGG | + | chr5_4:18624408-18624427 | Msa0841850:intron | 35.0% | |
| TGTACAGCAATTTCAATGAC+CGG | - | chr5_4:18624635-18624654 | None:intergenic | 35.0% | |
| TTCTGAGTAACAATGCTCTT+TGG | - | chr5_4:18624857-18624876 | None:intergenic | 35.0% | |
| TTGTACTCCAAAGCAACAAA+AGG | + | chr5_4:18625000-18625019 | Msa0841850:CDS | 35.0% | |
| AAAAAATCTGTAGCTGGAGA+AGG | + | chr5_4:18625235-18625254 | Msa0841850:CDS | 35.0% | |
| TAAAGCAGCAAAAGTTGCAT+TGG | + | chr5_4:18625285-18625304 | Msa0841850:CDS | 35.0% | |
| GCAATCCCAAATCAATTTCA+TGG | + | chr5_4:18625342-18625361 | Msa0841850:CDS | 35.0% | |
| TAATTGTCTTGTATCCGTCT+AGG | + | chr5_4:18625683-18625702 | Msa0841850:three_prime_UTR | 35.0% | |
| TTTCAAGCTAAGTACCTAGA+CGG | - | chr5_4:18625700-18625719 | None:intergenic | 35.0% | |
| ! | GGGTGATTTTCTTACCCTAA+CGG | - | chr5_4:18621491-18621510 | None:intergenic | 40.0% |
| GGAACTTGATCGCTCAAATT+GGG | - | chr5_4:18621511-18621530 | None:intergenic | 40.0% | |
| ATGAGAAAAACAGGTCGTGA+AGG | + | chr5_4:18621604-18621623 | Msa0841850:CDS | 40.0% | |
| AAAGAGAAGAAAAGTAGCGG+GGG | + | chr5_4:18621628-18621647 | Msa0841850:CDS | 40.0% | |
| TGGTTGAAGGTGGTAGAAAA+AGG | + | chr5_4:18621656-18621675 | Msa0841850:CDS | 40.0% | |
| AGATTGAAGGTGGAGTAGAA+GGG | + | chr5_4:18621728-18621747 | Msa0841850:CDS | 40.0% | |
| ! | GTGAAATAGTGGAAGAGTTG+AGG | + | chr5_4:18621773-18621792 | Msa0841850:CDS | 40.0% |
| ! | AATAGTGGAAGAGTTGAGGA+AGG | + | chr5_4:18621777-18621796 | Msa0841850:CDS | 40.0% |
| AGGAAGGAAGAAGTTGAATG+TGG | + | chr5_4:18621793-18621812 | Msa0841850:CDS | 40.0% | |
| ! | GTGGACTAAGGAACAAGAAT+TGG | + | chr5_4:18621861-18621880 | Msa0841850:CDS | 40.0% |
| CAAAACCTAGTCCTCATTTC+TGG | + | chr5_4:18621908-18621927 | Msa0841850:CDS | 40.0% | |
| TTCTTCCAGAAATGAGGACT+AGG | - | chr5_4:18621916-18621935 | None:intergenic | 40.0% | |
| GAAACGTTCTTCCAGAAATG+AGG | - | chr5_4:18621922-18621941 | None:intergenic | 40.0% | |
| ATAGCTGGATAATGTGTCCT+AGG | + | chr5_4:18622309-18622328 | Msa0841850:intron | 40.0% | |
| ATGTCTAGAAAGGTCTTCTC+AGG | + | chr5_4:18622354-18622373 | Msa0841850:intron | 40.0% | |
| ACTAATCTGCGCTGAGATTA+AGG | - | chr5_4:18622401-18622420 | None:intergenic | 40.0% | |
| GCTGCACACAATGATAAAGA+AGG | + | chr5_4:18622604-18622623 | Msa0841850:intron | 40.0% | |
| !! | ATAAAGAAGGCATTGCAGCA+TGG | + | chr5_4:18622617-18622636 | Msa0841850:intron | 40.0% |
| AGAGGTAGACACATACATTG+CGG | + | chr5_4:18622744-18622763 | Msa0841850:intron | 40.0% | |
| TTGTAGTTGACCCTACTTAG+TGG | + | chr5_4:18622998-18623017 | Msa0841850:intron | 40.0% | |
| TGTAGTTGACCCTACTTAGT+GGG | + | chr5_4:18622999-18623018 | Msa0841850:intron | 40.0% | |
| CATACTATGAAACCCGTCAA+GGG | + | chr5_4:18623083-18623102 | Msa0841850:intron | 40.0% | |
| GCAGCAAAGTTCAACACAAT+TGG | + | chr5_4:18623105-18623124 | Msa0841850:intron | 40.0% | |
| AGCGTCAGAGTAGTTAATAG+CGG | + | chr5_4:18623168-18623187 | Msa0841850:intron | 40.0% | |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | chr5_4:18623778-18623797 | Msa0841850:intron | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | chr5_4:18623780-18623799 | Msa0841850:intron | 40.0% |
| CGTCTTTGAGTGAATCTTTC+GGG | - | chr5_4:18623936-18623955 | None:intergenic | 40.0% | |
| ATGTTCCGTATGGTAACTGT+TGG | + | chr5_4:18624199-18624218 | Msa0841850:intron | 40.0% | |
| GAGATCCAACAGTTACCATA+CGG | - | chr5_4:18624207-18624226 | None:intergenic | 40.0% | |
| GATGTTAACCGTTTCCAACA+TGG | + | chr5_4:18624236-18624255 | Msa0841850:intron | 40.0% | |
| TCAAGCTTGCAATTGCATGA+GGG | + | chr5_4:18624433-18624452 | Msa0841850:intron | 40.0% | |
| GCATATGTGCTTATTTGCTC+CGG | + | chr5_4:18624613-18624632 | Msa0841850:intron | 40.0% | |
| TGCTGTACAAAATCTGTTGC+AGG | + | chr5_4:18624646-18624665 | Msa0841850:intron | 40.0% | |
| AAAATCTGTTGCAGGTACCT+GGG | + | chr5_4:18624654-18624673 | Msa0841850:intron | 40.0% | |
| ! | CAATCTTGTTTAGACTTCCC+AGG | - | chr5_4:18624674-18624693 | None:intergenic | 40.0% |
| GGAGTACAAAGTTCTTGACT+AGG | - | chr5_4:18624989-18625008 | None:intergenic | 40.0% | |
| TCTAGATTTAGTGGCTCATC+AGG | + | chr5_4:18625091-18625110 | Msa0841850:CDS | 40.0% | |
| TTTACTTGCTTTAGCACAGG+TGG | - | chr5_4:18625136-18625155 | None:intergenic | 40.0% | |
| AGGGCAAAAAAATCTGTAGC+TGG | + | chr5_4:18625229-18625248 | Msa0841850:CDS | 40.0% | |
| ! | GTCGCCCATGAAATTGATTT+GGG | - | chr5_4:18625350-18625369 | None:intergenic | 40.0% |
| TGTCGCCCATGAAATTGATT+TGG | - | chr5_4:18625351-18625370 | None:intergenic | 40.0% | |
| AGCTGAAGATGAAACTCCAT+AGG | + | chr5_4:18625408-18625427 | Msa0841850:CDS | 40.0% | |
| ATTAGCTCGAGAAAAGCCTA+TGG | - | chr5_4:18625427-18625446 | None:intergenic | 40.0% | |
| !!! | GGTTGTTGTTTTCATGGAGG+AGG | - | chr5_4:18621408-18621427 | None:intergenic | 45.0% |
| !!! | TGGGGTTGTTGTTTTCATGG+AGG | - | chr5_4:18621411-18621430 | None:intergenic | 45.0% |
| !!! | TGGTGGGGTTGTTGTTTTCA+TGG | - | chr5_4:18621414-18621433 | None:intergenic | 45.0% |
| !!! | TGTAGATTTGGGTTTTGGGG+TGG | - | chr5_4:18621434-18621453 | None:intergenic | 45.0% |
| CGGAACTTGATCGCTCAAAT+TGG | - | chr5_4:18621512-18621531 | None:intergenic | 45.0% | |
| ATCAAGTTCCGTCGCTTAGA+CGG | + | chr5_4:18621521-18621540 | Msa0841850:CDS | 45.0% | |
| ! | AAAAGGAGAAGAAAGCACGG+TGG | + | chr5_4:18621673-18621692 | Msa0841850:CDS | 45.0% |
| !! | GTGGTGATGGAATTGAGGAA+GGG | + | chr5_4:18621692-18621711 | Msa0841850:CDS | 45.0% |
| GAGATTGAAGGTGGAGTAGA+AGG | + | chr5_4:18621727-18621746 | Msa0841850:CDS | 45.0% | |
| AAGGTGGAGTAGAAGGGAAA+AGG | + | chr5_4:18621734-18621753 | Msa0841850:CDS | 45.0% | |
| GTGAAAAGGAAGAGAAAGCG+CGG | + | chr5_4:18621817-18621836 | Msa0841850:CDS | 45.0% | |
| CTGGAAGAACGTTTCGAAAC+TGG | + | chr5_4:18621927-18621946 | Msa0841850:CDS | 45.0% | |
| TCTCAGGAGAGTCAAAACAC+AGG | + | chr5_4:18622370-18622389 | Msa0841850:intron | 45.0% | |
| GCATACTATGAAACCCGTCA+AGG | + | chr5_4:18623082-18623101 | Msa0841850:intron | 45.0% | |
| TTGAACTTTGCTGCCCTTGA+CGG | - | chr5_4:18623099-18623118 | None:intergenic | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | + | chr5_4:18623179-18623198 | Msa0841850:intron | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | - | chr5_4:18623255-18623274 | None:intergenic | 45.0% | |
| AAAACCGCTATGCAGTGTTG+CGG | - | chr5_4:18623293-18623312 | None:intergenic | 45.0% | |
| GCGCCGTAAAGAATGAAAGA+AGG | - | chr5_4:18623433-18623452 | None:intergenic | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | - | chr5_4:18623785-18623804 | None:intergenic | 45.0% | |
| CGACCCCAAAAATGCTATAG+CGG | - | chr5_4:18623786-18623805 | None:intergenic | 45.0% | |
| GTGTATAGAAAGGCCATGTC+CGG | + | chr5_4:18623848-18623867 | Msa0841850:intron | 45.0% | |
| GAGTGAATCTTTCGGGCAAA+TGG | - | chr5_4:18623929-18623948 | None:intergenic | 45.0% | |
| TGCGGTCTCTATAGAACTGT+TGG | + | chr5_4:18624131-18624150 | Msa0841850:intron | 45.0% | |
| AACTGTTGGATCTCGACGTT+TGG | + | chr5_4:18624213-18624232 | Msa0841850:intron | 45.0% | |
| ACTGTTGGATCTCGACGTTT+GGG | + | chr5_4:18624214-18624233 | Msa0841850:intron | 45.0% | |
| CTAGATAGATCACGTGGTCA+TGG | - | chr5_4:18624389-18624408 | None:intergenic | 45.0% | |
| CATGACCACGTGATCTATCT+AGG | + | chr5_4:18624387-18624406 | Msa0841850:intron | 45.0% | |
| GTCAAGCTTGCAATTGCATG+AGG | + | chr5_4:18624432-18624451 | Msa0841850:intron | 45.0% | |
| CAAGCTTGCAATTGCATGAG+GGG | + | chr5_4:18624434-18624453 | Msa0841850:intron | 45.0% | |
| CAAAATCTGTTGCAGGTACC+TGG | + | chr5_4:18624653-18624672 | Msa0841850:intron | 45.0% | |
| TCAATGTCAGCCTCGATCAA+GGG | + | chr5_4:18624730-18624749 | Msa0841850:CDS | 45.0% | |
| GTGGGTATGAGCAGTTTACT+TGG | - | chr5_4:18624800-18624819 | None:intergenic | 45.0% | |
| AGTAAACTGCTCATACCCAC+TGG | + | chr5_4:18624800-18624819 | Msa0841850:CDS | 45.0% | |
| ATACCCACTGGAAAGAAGGT+TGG | + | chr5_4:18624812-18624831 | Msa0841850:CDS | 45.0% | |
| TTGCCAACCTTCTTTCCAGT+GGG | - | chr5_4:18624818-18624837 | None:intergenic | 45.0% | |
| TTTGCCAACCTTCTTTCCAG+TGG | - | chr5_4:18624819-18624838 | None:intergenic | 45.0% | |
| AAGATGCTGCTCTTCTCCTA+AGG | - | chr5_4:18625207-18625226 | None:intergenic | 45.0% | |
| GAGAAGAGCAGCATCTTCAA+GGG | + | chr5_4:18625210-18625229 | Msa0841850:CDS | 45.0% | |
| TCTGTAGCTGGAGAAGGAAA+AGG | + | chr5_4:18625241-18625260 | Msa0841850:CDS | 45.0% | |
| !! | CGACACTTGTAGTTCTGATG+AGG | + | chr5_4:18625366-18625385 | Msa0841850:CDS | 45.0% |
| ACGACAGTGGGGTTTCTGTT+TGG | - | chr5_4:18621346-18621365 | None:intergenic | 50.0% | |
| !!! | ATTTGGGTTTTGGGGTGGTG+GGG | - | chr5_4:18621429-18621448 | None:intergenic | 50.0% |
| !!! | GATTTGGGTTTTGGGGTGGT+GGG | - | chr5_4:18621430-18621449 | None:intergenic | 50.0% |
| !!! | AGATTTGGGTTTTGGGGTGG+TGG | - | chr5_4:18621431-18621450 | None:intergenic | 50.0% |
| ! | AGAAGAAAGCACGGTGGTGA+TGG | + | chr5_4:18621679-18621698 | Msa0841850:CDS | 50.0% |
| !! | GGTGGTGATGGAATTGAGGA+AGG | + | chr5_4:18621691-18621710 | Msa0841850:CDS | 50.0% |
| ! | GTGATGGAATTGAGGAAGGG+AGG | + | chr5_4:18621695-18621714 | Msa0841850:CDS | 50.0% |
| ! | AAAAGGAAGCACGATGCTGG+TGG | + | chr5_4:18621751-18621770 | Msa0841850:CDS | 50.0% |
| ! | CGATGCTGGTGGTGAAATAG+TGG | + | chr5_4:18621762-18621781 | Msa0841850:CDS | 50.0% |
| ! | AAAAGGAAGAGAAAGCGCGG+TGG | + | chr5_4:18621820-18621839 | Msa0841850:CDS | 50.0% |
| ! | GTGGTGGTGAACTTGCACAA+GGG | + | chr5_4:18621839-18621858 | Msa0841850:CDS | 50.0% |
| !! | ACTTGCACAAGGGTGGACTA+AGG | + | chr5_4:18621849-18621868 | Msa0841850:CDS | 50.0% |
| TGAACTTTGCTGCCCTTGAC+GGG | - | chr5_4:18623098-18623117 | None:intergenic | 50.0% | |
| AGCTGGATCGTGTGTCCTAT+AGG | + | chr5_4:18623133-18623152 | Msa0841850:intron | 50.0% | |
| TGGCTTATTGCATAGCGGTC+CGG | - | chr5_4:18623235-18623254 | None:intergenic | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | + | chr5_4:18623235-18623254 | Msa0841850:intron | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | - | chr5_4:18623240-18623259 | None:intergenic | 50.0% | |
| GGCGTAGCGTTATGAGATAG+CGG | + | chr5_4:18623256-18623275 | Msa0841850:intron | 50.0% | |
| ! | ATGAGATAGCGGCGCAATAG+CGG | + | chr5_4:18623267-18623286 | Msa0841850:intron | 50.0% |
| GAAATAGCGGTCATAGCGCT+AGG | + | chr5_4:18623753-18623772 | Msa0841850:intron | 50.0% | |
| ACTAATCCGCTCTGACTCTC+CGG | - | chr5_4:18623870-18623889 | None:intergenic | 50.0% | |
| !! | GCATTGTAGTGGGCTTACAG+CGG | + | chr5_4:18624093-18624112 | Msa0841850:intron | 50.0% |
| AGGCTGCACAATGTTCCGTA+TGG | + | chr5_4:18624189-18624208 | Msa0841850:intron | 50.0% | |
| GCTCACCTAGATAGATCACG+TGG | - | chr5_4:18624395-18624414 | None:intergenic | 50.0% | |
| CTTGATCGAGGCTGACATTG+AGG | - | chr5_4:18624731-18624750 | None:intergenic | 50.0% | |
| CTCAATGTCAGCCTCGATCA+AGG | + | chr5_4:18624729-18624748 | Msa0841850:CDS | 50.0% | |
| ATTGCCTTTGCCCTTGATCG+AGG | - | chr5_4:18624743-18624762 | None:intergenic | 50.0% | |
| GCTCATACCCACTGGAAAGA+AGG | + | chr5_4:18624808-18624827 | Msa0841850:CDS | 50.0% | |
| GGAGAAGAGCAGCATCTTCA+AGG | + | chr5_4:18625209-18625228 | Msa0841850:CDS | 50.0% | |
| GAGGACAATGACGATGACAC+TGG | + | chr5_4:18625385-18625404 | Msa0841850:CDS | 50.0% | |
| CAGGTGGGTAAACGACAGTG+GGG | - | chr5_4:18621357-18621376 | None:intergenic | 55.0% | |
| CCAGGTGGGTAAACGACAGT+GGG | - | chr5_4:18621358-18621377 | None:intergenic | 55.0% | |
| GAGTCTCGGTGATCTTCGTG+GGG | - | chr5_4:18621383-18621402 | None:intergenic | 55.0% | |
| CGAGTCTCGGTGATCTTCGT+GGG | - | chr5_4:18621384-18621403 | None:intergenic | 55.0% | |
| ACGAGTCTCGGTGATCTTCG+TGG | - | chr5_4:18621385-18621404 | None:intergenic | 55.0% | |
| TCATGGAGGAGGACGAGTCT+CGG | - | chr5_4:18621397-18621416 | None:intergenic | 55.0% | |
| CTAGGAGACCGTCTAAGCGA+CGG | - | chr5_4:18621532-18621551 | None:intergenic | 55.0% | |
| ! | GAAAAGTAGCGGGGGAGTTG+TGG | + | chr5_4:18621636-18621655 | Msa0841850:CDS | 55.0% |
| !! | GCACGGTGGTGATGGAATTG+AGG | + | chr5_4:18621687-18621706 | Msa0841850:CDS | 55.0% |
| ! | GGGAAAAGGAAGCACGATGC+TGG | + | chr5_4:18621748-18621767 | Msa0841850:CDS | 55.0% |
| ! | GGTGGTGGTGAACTTGCACA+AGG | + | chr5_4:18621838-18621857 | Msa0841850:CDS | 55.0% |
| GTGGTGAACTTGCACAAGGG+TGG | + | chr5_4:18621842-18621861 | Msa0841850:CDS | 55.0% | |
| CATTGTGTGCAGCATCGCAG+CGG | - | chr5_4:18622597-18622616 | None:intergenic | 55.0% | |
| ! | CATTGCAGCATGGCTTGCAG+TGG | + | chr5_4:18622627-18622646 | Msa0841850:intron | 55.0% |
| GCATTGCATAGGGCTTGCAG+AGG | + | chr5_4:18622726-18622745 | Msa0841850:intron | 55.0% | |
| TACGGCGCCTTTCATCTCCT+TGG | + | chr5_4:18623445-18623464 | Msa0841850:intron | 55.0% | |
| CATTGTGTGCCACATCGCAG+CGG | - | chr5_4:18624064-18624083 | None:intergenic | 55.0% | |
| GCTGACATTGAGGTGGTGTG+TGG | - | chr5_4:18624721-18624740 | None:intergenic | 55.0% | |
| GATCGAGGCTGACATTGAGG+TGG | - | chr5_4:18624728-18624747 | None:intergenic | 55.0% | |
| TCAGCCTCGATCAAGGGCAA+AGG | + | chr5_4:18624736-18624755 | Msa0841850:CDS | 55.0% | |
| ! | CCCACTGTCGTTTACCCACC+TGG | + | chr5_4:18621355-18621374 | Msa0841850:CDS | 60.0% |
| GCCAGGTGGGTAAACGACAG+TGG | - | chr5_4:18621359-18621378 | None:intergenic | 60.0% | |
| ! | ATCTTCGTGGGGTGCCAGGT+GGG | - | chr5_4:18621372-18621391 | None:intergenic | 60.0% |
| AGCGGGGGAGTTGTGGTTGA+AGG | + | chr5_4:18621643-18621662 | Msa0841850:CDS | 60.0% | |
| GGGGGAGTTGTGGTTGAAGG+TGG | + | chr5_4:18621646-18621665 | Msa0841850:CDS | 60.0% | |
| ! | AGGAAGAGAAAGCGCGGTGG+TGG | + | chr5_4:18621823-18621842 | Msa0841850:CDS | 60.0% |
| TGGTAGAGTCGCACGCAGTG+TGG | + | chr5_4:18622647-18622666 | Msa0841850:intron | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | + | chr5_4:18623189-18623208 | Msa0841850:intron | 60.0% | |
| CCATGTCCGGAGAGTCAGAG+CGG | + | chr5_4:18623861-18623880 | Msa0841850:intron | 60.0% | |
| CGGTAGAGCTGCAGACAGTG+CGG | + | chr5_4:18624113-18624132 | Msa0841850:intron | 60.0% | |
| GAGGTGGTGTGTGGAAGTCG+TGG | - | chr5_4:18624712-18624731 | None:intergenic | 60.0% | |
| ! | GATCTTCGTGGGGTGCCAGG+TGG | - | chr5_4:18621373-18621392 | None:intergenic | 65.0% |
| ! | GGTGATCTTCGTGGGGTGCC+AGG | - | chr5_4:18621376-18621395 | None:intergenic | 65.0% |
| GCGGCCGCAACACTGCATAG+CGG | + | chr5_4:18623286-18623305 | Msa0841850:intron | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | - | chr5_4:18623810-18623829 | None:intergenic | 65.0% |
| CCGCTCTGACTCTCCGGACA+TGG | - | chr5_4:18623864-18623883 | None:intergenic | 65.0% | |
| ACAGTGCAGCCGCTGCGATG+TGG | + | chr5_4:18622585-18622604 | Msa0841850:intron | 65.0% | |
| AGCGGCCAATAGCGGCCGCG+CGG | + | chr5_4:18623197-18623216 | Msa0841850:intron | 75.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | + | chr5_4:18623202-18623221 | Msa0841850:intron | 75.0% | |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | - | chr5_4:18623205-18623224 | None:intergenic | 80.0% |
| ! | CGGTACCGCACCGCACCGCG+CGG | - | chr5_4:18623215-18623234 | None:intergenic | 80.0% |
| ! | CGCGCGGTGCGGTGCGGTAC+CGG | + | chr5_4:18623213-18623232 | Msa0841850:intron | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | + | chr5_4:18623207-18623226 | Msa0841850:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 18621340 | 18625745 | 18621340 | ID=Msa0841850;Name=Msa0841850 |
| chr5_4 | mRNA | 18621340 | 18625745 | 18621340 | ID=Msa0841850-mRNA-1;Parent=Msa0841850;Name=Msa0841850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|316|456 |
| chr5_4 | exon | 18621340 | 18621948 | 18621340 | ID=Msa0841850-mRNA-1:exon:7765;Parent=Msa0841850-mRNA-1 |
| chr5_4 | exon | 18624668 | 18625745 | 18624668 | ID=Msa0841850-mRNA-1:exon:7766;Parent=Msa0841850-mRNA-1 |
| chr5_4 | CDS | 18621340 | 18621948 | 18621340 | ID=Msa0841850-mRNA-1:cds;Parent=Msa0841850-mRNA-1 |
| chr5_4 | CDS | 18624668 | 18625429 | 18624668 | ID=Msa0841850-mRNA-1:cds;Parent=Msa0841850-mRNA-1 |
| chr5_4 | three_prime_UTR | 18625430 | 18625745 | 18625430 | ID=Msa0841850-mRNA-1:three_prime_utr;Parent=Msa0841850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
