AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0723870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723870 MtrunA17_Chr5g0414901 97.524 525 10 2 1 525 1 522 0.0 1063
Msa0723870 MtrunA17_Chr5g0443721 65.643 521 170 5 7 525 12 525 0.0 731
Msa0723870 MtrunA17_Chr8g0364321 57.708 253 45 5 24 276 3 193 4.91e-85 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723870 AT1G70160.1 81.028 506 92 3 21 525 21 523 0.0 869
Msa0723870 AT4G27020.1 68.056 504 155 4 24 525 24 523 0.0 748
Msa0723870 AT5G54870.1 66.206 506 165 4 22 525 30 531 0.0 732
Msa0723870 AT5G54870.2 69.647 425 127 2 103 525 1 425 0.0 654

Find 165 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTAGGAACTCTAAAT+TGG 0.173776 5_1:-21899506 None:intergenic
GGGAATTAGGGATTTGAAAT+TGG 0.193867 5_1:-21897802 None:intergenic
AATTTGTGGGTTGGTGAATC+TGG 0.215887 5_1:+21899721 Msa0723870:CDS
CTTCCATTCTGCCAGATTCT+TGG 0.228281 5_1:+21902014 Msa0723870:CDS
CATGGTGGCGGTGGTGATTC+TGG 0.240921 5_1:+21898148 Msa0723870:CDS
TTGCTCCCATGTGTTTCTTT+AGG 0.246809 5_1:-21899519 None:intergenic
TGCGACATTCCCTCTATTGT+TGG 0.298102 5_1:+21902216 Msa0723870:three_prime_UTR
TGATTGTGGGAAGGGTAGTT+TGG 0.303784 5_1:-21897748 None:intergenic
AGGGTTTGTTTCAGTGGATT+TGG 0.306750 5_1:-21897836 None:intergenic
CGATAGGCCTTCACAATGTT+AGG 0.317578 5_1:+21902124 Msa0723870:CDS
GGCGGTGGTGATTCTGGTTT+GGG 0.321629 5_1:+21898154 Msa0723870:CDS
TGTCGAAAATCCGCGGTAGA+TGG 0.325296 5_1:+21899617 Msa0723870:CDS
TAGAGTAAACGATGTGTTAC+CGG 0.347530 5_1:+21897964 Msa0723870:CDS
TGAATAGAACCATTATTATA+CGG 0.354003 5_1:-21898073 None:intergenic
GATCCTGCAGATGTTCATTC+TGG 0.368715 5_1:+21899580 Msa0723870:CDS
TACTTGAATGGAGCTAGAAA+TGG 0.377318 5_1:-21901811 None:intergenic
TGAATATAGGATGGAATTCC+CGG 0.380777 5_1:+21902037 Msa0723870:CDS
TGGCGGTGGTGATTCTGGTT+TGG 0.384909 5_1:+21898153 Msa0723870:CDS
TCCTATATTCACCAAGAATC+TGG 0.388638 5_1:-21902025 None:intergenic
TAGACCCAATCATCTTGTTC+TGG 0.389062 5_1:-21901717 None:intergenic
ACAGGCCATGATATTTCTTT+CGG 0.390190 5_1:-21897992 None:intergenic
CCATTCCAGAACAAGATGAT+TGG 0.391466 5_1:+21901712 Msa0723870:CDS
CGTGAATTCAGTTACTTGAA+TGG 0.391949 5_1:-21901823 None:intergenic
GAAAGAGAGTGTTAGAGAAT+GGG 0.392407 5_1:+21902320 Msa0723870:three_prime_UTR
GATATTTCTTTCGGCAAAAC+CGG 0.393249 5_1:-21897983 None:intergenic
GGAAAGAGAGTGTTAGAGAA+TGG 0.395119 5_1:+21902319 Msa0723870:three_prime_UTR
CTCTATTCTCGAACACTGCA+TGG 0.395802 5_1:+21899473 Msa0723870:CDS
AACACATCGTTTACTCTAAA+CGG 0.397726 5_1:-21897959 None:intergenic
AGTCTGCTTGAAGGATGAAA+TGG 0.403621 5_1:+21899696 Msa0723870:CDS
GATTGTGGGAAGGGTAGTTT+GGG 0.410103 5_1:-21897747 None:intergenic
GAGTATGCGCGGAGCATGTC+TGG 0.410468 5_1:+21900045 Msa0723870:CDS
GTTGACGGTTGCGGTGTTGA+TGG 0.417807 5_1:-21897716 None:intergenic
TTCTCATTGTTGCACCATCT+TGG 0.420280 5_1:-21901984 None:intergenic
GCCAGATTCTTGGTGAATAT+AGG 0.422500 5_1:+21902024 Msa0723870:CDS
GTCGAAAATCCGCGGTAGAT+GGG 0.427564 5_1:+21899618 Msa0723870:CDS
ATAATAATGGTTCTATTCAA+TGG 0.427948 5_1:+21898077 Msa0723870:CDS
AGAGGATGAAAAGGAGACAT+TGG 0.435033 5_1:-21897875 None:intergenic
GAAGCGTTGAATAAGCGGTT+AGG 0.435388 5_1:+21900942 Msa0723870:CDS
TCTCATGCCAGCAGGAATGC+TGG 0.436934 5_1:+21899420 Msa0723870:CDS
ACACTTGAAAAGTGGGTAAC+TGG 0.438027 5_1:+21899652 Msa0723870:CDS
ACCGCGAGAAGAGGATGAAA+AGG 0.439887 5_1:-21897884 None:intergenic
TGGGTAACTGGTGCATTTGC+TGG 0.440657 5_1:+21899664 Msa0723870:CDS
TTCCCACGAATCAAGCTTCA+AGG 0.441820 5_1:-21899262 None:intergenic
GTGGGAAGAGCCTGCAGAGC+TGG 0.443054 5_1:+21899278 Msa0723870:CDS
ACATCGCTGTTATCGAGTTT+CGG 0.448881 5_1:+21897920 Msa0723870:CDS
AGGACAGTGCTCATTCATAT+TGG 0.449083 5_1:-21902084 None:intergenic
CATTCAAGTAACTGAATTCA+CGG 0.450345 5_1:+21901824 Msa0723870:CDS
CACATGTTTGCAGCATAAGC+TGG 0.450698 5_1:-21900915 None:intergenic
CGAATTTCAACCAACAATAG+AGG 0.459879 5_1:-21902226 None:intergenic
TATTCTTTCAATGTATAAAG+AGG 0.460691 5_1:+21901773 Msa0723870:CDS
TCCACCTCTTGATGCTCACT+TGG 0.462178 5_1:+21900131 Msa0723870:CDS
GTTTGGGAAATTAATGTTGA+CGG 0.463195 5_1:-21897731 None:intergenic
ATTACATATTCCAGCTCTGC+AGG 0.463727 5_1:-21899288 None:intergenic
TCTGTCACTCCGTATAATAA+TGG 0.464647 5_1:+21898064 Msa0723870:CDS
ATCATATTGTGATAACCATA+TGG 0.464777 5_1:-21900072 None:intergenic
CATTCCAGAACAAGATGATT+GGG 0.468669 5_1:+21901713 Msa0723870:CDS
ATTTGTGGGTTGGTGAATCT+GGG 0.472063 5_1:+21899722 Msa0723870:CDS
CTTTCAATGTATAAAGAGGC+TGG 0.479262 5_1:+21901777 Msa0723870:CDS
CAACACCATACCGGATAACA+TGG 0.481331 5_1:+21899211 Msa0723870:CDS
AGCATGTCTGGCAAGCCATA+TGG 0.481486 5_1:+21900057 Msa0723870:CDS
TTCGTGATGCATACATGCTT+AGG 0.484507 5_1:+21901934 Msa0723870:CDS
GGAACTCTAAATTGGAACTC+TGG 0.485642 5_1:-21899498 None:intergenic
ATTCAACTCCACTGCTGCAT+GGG 0.486012 5_1:+21900023 Msa0723870:CDS
TTAGGGATTTGAAATTGGAA+TGG 0.487378 5_1:-21897797 None:intergenic
GAGTGTTAGAGAATGGGGAG+TGG 0.490380 5_1:+21902326 Msa0723870:three_prime_UTR
TCTGTGTTTCTCATGCCAGC+AGG 0.491314 5_1:+21899412 Msa0723870:CDS
TCTATTCTCGAACACTGCAT+GGG 0.492246 5_1:+21899474 Msa0723870:CDS
AGTAGTAGTCCCATGTTATC+CGG 0.494320 5_1:-21899221 None:intergenic
TGCTCATTCATATTGGCATA+AGG 0.496178 5_1:-21902077 None:intergenic
CTCATGCCAGCAGGAATGCT+GGG 0.497653 5_1:+21899421 Msa0723870:CDS
TTGAGAAACGCATTCAGCCT+TGG 0.503115 5_1:+21899545 Msa0723870:CDS
TCATACAGCAGTCTGCTTGA+AGG 0.504325 5_1:+21899687 Msa0723870:CDS
TCACCAGAATGAACATCTGC+AGG 0.505114 5_1:-21899583 None:intergenic
AAGCGTTGAATAAGCGGTTA+GGG 0.506168 5_1:+21900943 Msa0723870:CDS
CATGCAGTGTTCGAGAATAG+AGG 0.507962 5_1:-21899472 None:intergenic
TAGTCCCATGTTATCCGGTA+TGG 0.508088 5_1:-21899216 None:intergenic
GTCTGCTTGAAGGATGAAAT+GGG 0.509012 5_1:+21899697 Msa0723870:CDS
ACTTGAATGGAGCTAGAAAT+GGG 0.509499 5_1:-21901810 None:intergenic
TCACCAAGAATCTGGCAGAA+TGG 0.512065 5_1:-21902017 None:intergenic
AAAGAGAGTGTTAGAGAATG+GGG 0.513864 5_1:+21902321 Msa0723870:three_prime_UTR
GGAACCAAAGTGTTATAGCC+CGG 0.517137 5_1:-21902056 None:intergenic
TGGTGCCGTTCTCTATCTCA+AGG 0.519495 5_1:+21898177 Msa0723870:CDS
AGACAGGGGAAGCACACAGC+TGG 0.519722 5_1:+21899163 Msa0723870:intron
ACGATCAAAACCGCGAGAAG+AGG 0.520263 5_1:-21897893 None:intergenic
TGGTAATTCCATGGCATGAA+TGG 0.520928 5_1:+21899926 Msa0723870:CDS
GATGAAGATGATGATGATTG+TGG 0.525875 5_1:-21897762 None:intergenic
TTGTACAGGTAAAGCAGCAT+GGG 0.528303 5_1:+21899386 Msa0723870:intron
CCAATCATCTTGTTCTGGAA+TGG 0.530482 5_1:-21901712 None:intergenic
GAAATTAATGTTGACGGTTG+CGG 0.530748 5_1:-21897725 None:intergenic
CGCATACTCCCATGCAGCAG+TGG 0.532485 5_1:-21900031 None:intergenic
AATTCAACTCCACTGCTGCA+TGG 0.534586 5_1:+21900022 Msa0723870:CDS
ATTCCCGGGCTATAACACTT+TGG 0.537660 5_1:+21902052 Msa0723870:CDS
GCCTATCGTAAGTTGGAGGA+AGG 0.540693 5_1:-21902109 None:intergenic
GGATGAAATGGGAAATTTGT+GGG 0.541042 5_1:+21899708 Msa0723870:CDS
TACCTTGAAGCTTGATTCGT+GGG 0.541678 5_1:+21899260 Msa0723870:CDS
AGTGTGCCCAGCATTCCTGC+TGG 0.541881 5_1:-21899427 None:intergenic
AAGCAATGCTATCTGTGGGT+TGG 0.543286 5_1:-21899974 None:intergenic
AAATAATTGTGGTAATTCCA+TGG 0.547273 5_1:+21899917 Msa0723870:CDS
ATCTGGGCATGAGAATGAAA+AGG 0.548561 5_1:+21899738 Msa0723870:CDS
TAACCACCTTAAAACATATG+TGG 0.550110 5_1:-21902258 None:intergenic
ATACCTTGAAGCTTGATTCG+TGG 0.551856 5_1:+21899259 Msa0723870:CDS
ATCAAACACGTCTACCAAGA+TGG 0.552893 5_1:+21901970 Msa0723870:CDS
GAAATGGGAAATTTGTGGGT+TGG 0.554717 5_1:+21899712 Msa0723870:CDS
AATGGTTCTATTCAATGGAA+AGG 0.557896 5_1:+21898082 Msa0723870:CDS
TCGAAAATCCGCGGTAGATG+GGG 0.560142 5_1:+21899619 Msa0723870:CDS
GATGATGATGATTGTGGGAA+GGG 0.561583 5_1:-21897756 None:intergenic
TGGGAAGCTGCTCTTAAAGA+TGG 0.564571 5_1:+21899949 Msa0723870:CDS
GAGTTTACTCACCATGGTGG+CGG 0.565715 5_1:+21898136 Msa0723870:CDS
GAACCAAAGTGTTATAGCCC+GGG 0.566880 5_1:-21902055 None:intergenic
TGTGAAGGCCTATCGTAAGT+TGG 0.567007 5_1:-21902116 None:intergenic
AAGTGAGCATCAAGAGGTGG+AGG 0.573957 5_1:-21900129 None:intergenic
GTGACAGATCCAACAAAAGA+AGG 0.575948 5_1:-21898049 None:intergenic
TTTACTCACCATGGTGGCGG+TGG 0.576073 5_1:+21898139 Msa0723870:CDS
ATGAAGATGATGATGATTGT+GGG 0.578016 5_1:-21897761 None:intergenic
GCTTCCCACCATTCATGCCA+TGG 0.578286 5_1:-21899934 None:intergenic
CCCTTCCTCCAACTTACGAT+AGG 0.583898 5_1:+21902108 Msa0723870:CDS
ATTGTACAGGTAAAGCAGCA+TGG 0.586593 5_1:+21899385 Msa0723870:intron
AGCACACAGCTGGACCTGCA+TGG 0.588519 5_1:+21899173 Msa0723870:CDS
GAAAAGGAGACATTGGAGAG+AGG 0.589411 5_1:-21897868 None:intergenic
TGAAACCTTGAGATAGAGAA+CGG 0.589505 5_1:-21898182 None:intergenic
ACTGATAATGAAGAGAGTAT+CGG 0.591483 5_1:+21902298 Msa0723870:three_prime_UTR
CTGCTGCATGGGAGTATGCG+CGG 0.591876 5_1:+21900034 Msa0723870:CDS
CAGAATCACCACCGCCACCA+TGG 0.592744 5_1:-21898147 None:intergenic
GATTCTTGGTGAATATAGGA+TGG 0.595792 5_1:+21902028 Msa0723870:CDS
GCACGCAACTCTGGATGTAG+AGG 0.595924 5_1:-21899997 None:intergenic
TACTTGAGACTGAGAAGCGT+GGG 0.595984 5_1:+21901667 Msa0723870:CDS
TAATTTCTGTCATGTCTATG+TGG 0.596021 5_1:+21900880 Msa0723870:CDS
AGGATGAAATGGGAAATTTG+TGG 0.602138 5_1:+21899707 Msa0723870:CDS
CTGTCATGTCTATGTGGACA+AGG 0.604457 5_1:+21900886 Msa0723870:CDS
TCGTAAGTTGGAGGAAGGGA+AGG 0.604565 5_1:-21902104 None:intergenic
AGAGGAAGCAATGCTATCTG+TGG 0.608658 5_1:-21899979 None:intergenic
AGATGATGATGATTGTGGGA+AGG 0.617532 5_1:-21897757 None:intergenic
AGAGTTCCTAAAGAAACACA+TGG 0.618940 5_1:+21899513 Msa0723870:CDS
TAATTCCATGGCATGAATGG+TGG 0.622802 5_1:+21899929 Msa0723870:CDS
AAACTTGAGTTTACTCACCA+TGG 0.626316 5_1:+21898130 Msa0723870:CDS
GAATATAGGATGGAATTCCC+GGG 0.626423 5_1:+21902038 Msa0723870:CDS
GGTGGTGATTCTGGTTTGGG+TGG 0.629701 5_1:+21898157 Msa0723870:CDS
GGAATGAAGCGTTGAATAAG+CGG 0.630610 5_1:+21900937 Msa0723870:CDS
GGATCAATAGTTGCACGCCA+AGG 0.634221 5_1:-21899562 None:intergenic
ACAATAGAGGGAATGTCGCA+AGG 0.634334 5_1:-21902213 None:intergenic
GAAAACATACAGATCCATGC+AGG 0.634933 5_1:-21899187 None:intergenic
GATGATTGGGTCTACAGTGA+CGG 0.635442 5_1:+21901726 Msa0723870:CDS
GAATTTCAACCAACAATAGA+GGG 0.635580 5_1:-21902225 None:intergenic
CGATCAACCTAACATTGTGA+AGG 0.636736 5_1:-21902131 None:intergenic
CCTATCGTAAGTTGGAGGAA+GGG 0.638531 5_1:-21902108 None:intergenic
ACCAAGTGAGCATCAAGAGG+TGG 0.639800 5_1:-21900132 None:intergenic
CAGCTTATGCTGCAAACATG+TGG 0.640388 5_1:+21900916 Msa0723870:CDS
AAAATCCGCGGTAGATGGGG+AGG 0.643180 5_1:+21899622 Msa0723870:CDS
AATTCCATGGCATGAATGGT+GGG 0.644394 5_1:+21899930 Msa0723870:CDS
CTATTCTCGAACACTGCATG+GGG 0.644624 5_1:+21899475 Msa0723870:CDS
GAAGGCCTATCGTAAGTTGG+AGG 0.653840 5_1:-21902113 None:intergenic
AATACCAAGTGAGCATCAAG+AGG 0.657319 5_1:-21900135 None:intergenic
CGGAAAGTCAACAACATGTG+TGG 0.663104 5_1:+21901746 Msa0723870:CDS
CAAAACCTCCCCATCTACCG+CGG 0.663802 5_1:-21899627 None:intergenic
AACACCATACCGGATAACAT+GGG 0.665103 5_1:+21899212 Msa0723870:CDS
CTACTTGAGACTGAGAAGCG+TGG 0.666781 5_1:+21901666 Msa0723870:CDS
CTATGAAAATTATTCAACAC+AGG 0.669825 5_1:-21898010 None:intergenic
GCAGGGTGAAGAAATAATTG+TGG 0.670393 5_1:+21899906 Msa0723870:intron
GAATAAGCGGTTAGGGACCG+AGG 0.672405 5_1:+21900950 Msa0723870:CDS
TGTACAGGTAAAGCAGCATG+GGG 0.684818 5_1:+21899387 Msa0723870:intron
GAGGAAGCAATGCTATCTGT+GGG 0.686592 5_1:-21899978 None:intergenic
TTGGCTGTGTCGAAAATCCG+CGG 0.695554 5_1:+21899610 Msa0723870:CDS
GAGTTCCTAAAGAAACACAT+GGG 0.697196 5_1:+21899514 Msa0723870:CDS
CTTGAGTTTACTCACCATGG+TGG 0.712375 5_1:+21898133 Msa0723870:CDS
GGAGAATGAGAAATGAAACG+TGG 0.811928 5_1:-21897695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTTGTAATTTATCT+TGG - chr5_1:21901162-21901181 None:intergenic 10.0%
!!! AAACTTTAAAATACAAAAAT+GGG + chr5_1:21902379-21902398 Msa0723870:three_prime_UTR 10.0%
!!! TCAAGTTTGTTTTTAAAAAA+GGG - chr5_1:21898540-21898559 None:intergenic 15.0%
!! AAATGATTATGATTAATCTT+AGG - chr5_1:21898849-21898868 None:intergenic 15.0%
!! ATCTGATAATTATATTCAAT+TGG + chr5_1:21898888-21898907 Msa0723870:intron 15.0%
!! AATTATATTCAATTGGAATT+TGG + chr5_1:21898895-21898914 Msa0723870:intron 15.0%
!! AAATTTACAAAATAAACTTG+TGG - chr5_1:21899101-21899120 None:intergenic 15.0%
!!! TTTATATTACTCTCTTTTTT+TGG - chr5_1:21900207-21900226 None:intergenic 15.0%
!!! TTATGATTTTCTTTTAAAAG+AGG + chr5_1:21900630-21900649 Msa0723870:intron 15.0%
!!! TATGATTTTCTTTTAAAAGA+GGG + chr5_1:21900631-21900650 Msa0723870:intron 15.0%
!! TAAATTACAAATAAATTGAG+AGG + chr5_1:21901165-21901184 Msa0723870:intron 15.0%
!! ACATTAAACAAATTTATAGA+TGG - chr5_1:21901452-21901471 None:intergenic 15.0%
!!! GAAACTTTAAAATACAAAAA+TGG + chr5_1:21902378-21902397 Msa0723870:three_prime_UTR 15.0%
!!! AACTTTAAAATACAAAAATG+GGG + chr5_1:21902380-21902399 Msa0723870:three_prime_UTR 15.0%
!! TGAATAGAACCATTATTATA+CGG - chr5_1:21898076-21898095 None:intergenic 20.0%
!!! ATAATAATGGTTCTATTCAA+TGG + chr5_1:21898077-21898096 Msa0723870:CDS 20.0%
!! AAAATAAATTCTACTTTGGA+GGG - chr5_1:21898275-21898294 None:intergenic 20.0%
!! AAAAATAAATTCTACTTTGG+AGG - chr5_1:21898276-21898295 None:intergenic 20.0%
!! AGGAAAAATAAATTCTACTT+TGG - chr5_1:21898279-21898298 None:intergenic 20.0%
!!! CTCAAGTTTGTTTTTAAAAA+AGG - chr5_1:21898541-21898560 None:intergenic 20.0%
!! TGATGTAGCTATATTTAAAT+GGG - chr5_1:21898764-21898783 None:intergenic 20.0%
!!! AGTGATGATATCTTATTTAT+GGG + chr5_1:21898921-21898940 Msa0723870:intron 20.0%
!!! ACATTTTGAGAAAATCAAAT+AGG - chr5_1:21899818-21899837 None:intergenic 20.0%
!! GAGTAATATAAATATTGAAC+CGG + chr5_1:21900215-21900234 Msa0723870:intron 20.0%
!! TAGAATATATATTTAGCTGA+AGG + chr5_1:21900248-21900267 Msa0723870:intron 20.0%
!! AAGAAATAGTTTAGTCTATT+TGG + chr5_1:21900360-21900379 Msa0723870:intron 20.0%
!! AGAAATAGTTTAGTCTATTT+GGG + chr5_1:21900361-21900380 Msa0723870:intron 20.0%
!!! AATGATTCTAAAAAAGAATG+AGG - chr5_1:21900496-21900515 None:intergenic 20.0%
!! TTACATTTAGTATGGAATTT+AGG + chr5_1:21901079-21901098 Msa0723870:intron 20.0%
!!! TTTTACATTGCATGAAAAAT+TGG + chr5_1:21901228-21901247 Msa0723870:intron 20.0%
!! ATGTAATGTACTAAGTATAA+AGG + chr5_1:21901324-21901343 Msa0723870:intron 20.0%
!! GAACATTTAGTAAAAGATAA+AGG + chr5_1:21901412-21901431 Msa0723870:intron 20.0%
!!! ATGATTGTTTTACAATTAGT+GGG + chr5_1:21901599-21901618 Msa0723870:intron 20.0%
!! TATTCTTTCAATGTATAAAG+AGG + chr5_1:21901773-21901792 Msa0723870:CDS 20.0%
! CTATGAAAATTATTCAACAC+AGG - chr5_1:21898013-21898032 None:intergenic 25.0%
!! TCATGTAGAATAAATTTTGG+AGG - chr5_1:21898299-21898318 None:intergenic 25.0%
! TCCAAAATTTATTCTACATG+AGG + chr5_1:21898298-21898317 Msa0723870:intron 25.0%
!! ACTCAATTAATTTTTCTTGC+TGG + chr5_1:21898448-21898467 Msa0723870:intron 25.0%
! TTTAGATTGAAGTGTATGTT+TGG - chr5_1:21898478-21898497 None:intergenic 25.0%
! GTGATGTAGCTATATTTAAA+TGG - chr5_1:21898765-21898784 None:intergenic 25.0%
!! CAGTGATGATATCTTATTTA+TGG + chr5_1:21898920-21898939 Msa0723870:intron 25.0%
!! GTGATGATATCTTATTTATG+GGG + chr5_1:21898922-21898941 Msa0723870:intron 25.0%
! AACTAAATTCAGATAAACAG+AGG - chr5_1:21898998-21899017 None:intergenic 25.0%
!! TCTGCTGAAAATATAGTTTT+TGG + chr5_1:21899132-21899151 Msa0723870:intron 25.0%
!!! TTTTGTCTGAAACTTTTTGT+TGG + chr5_1:21899330-21899349 Msa0723870:intron 25.0%
!! TTTCTTTAGGAACTCTAAAT+TGG - chr5_1:21899509-21899528 None:intergenic 25.0%
! AGAATGAAAAGGTAAAAATG+TGG + chr5_1:21899749-21899768 Msa0723870:intron 25.0%
! GGTAAAAATGTGGAATATTA+TGG + chr5_1:21899759-21899778 Msa0723870:intron 25.0%
!! AGAATATCATTAGTCTATAC+AGG + chr5_1:21899856-21899875 Msa0723870:intron 25.0%
! AAATAATTGTGGTAATTCCA+TGG + chr5_1:21899917-21899936 Msa0723870:CDS 25.0%
! ATCATATTGTGATAACCATA+TGG - chr5_1:21900075-21900094 None:intergenic 25.0%
!! ATCACAATATGATTTTCAGT+TGG + chr5_1:21900082-21900101 Msa0723870:CDS 25.0%
! TATATTCTACACAAAAATGC+CGG - chr5_1:21900237-21900256 None:intergenic 25.0%
! TCCTTAATAAAGTAATACAG+CGG - chr5_1:21900274-21900293 None:intergenic 25.0%
! AGTTATGTGATCATATATCA+TGG - chr5_1:21900466-21900485 None:intergenic 25.0%
! TATTTACTAATGGTGTGTTT+GGG - chr5_1:21900586-21900605 None:intergenic 25.0%
!!! ATTTTCTTTTAAAAGAGGGA+AGG + chr5_1:21900635-21900654 Msa0723870:intron 25.0%
! AGCAATATCAATATATACCT+CGG - chr5_1:21900970-21900989 None:intergenic 25.0%
! CCACATGAAAGTAAAAAAAA+AGG - chr5_1:21901027-21901046 None:intergenic 25.0%
!!! CCTTTTTTTTTACTTTCATG+TGG + chr5_1:21901024-21901043 Msa0723870:intron 25.0%
! GACATTAGTTACATTTAGTA+TGG + chr5_1:21901071-21901090 Msa0723870:intron 25.0%
!! TTTTATACTTTGCATCATTG+AGG + chr5_1:21901136-21901155 Msa0723870:intron 25.0%
!!! ATGGCTTATTGTTTTATTTC+AGG + chr5_1:21901198-21901217 Msa0723870:intron 25.0%
! AATGAAAGAACCAAAAATCA+AGG - chr5_1:21901271-21901290 None:intergenic 25.0%
!!! TTCTTTCATTACTGTTTTGA+TGG + chr5_1:21901281-21901300 Msa0723870:intron 25.0%
!! ACATTACATATTAGTCCTTT+TGG - chr5_1:21901313-21901332 None:intergenic 25.0%
!! TCCTTCAAACAAAAGTATAA+AGG + chr5_1:21901349-21901368 Msa0723870:intron 25.0%
!!! TCCTTTATACTTTTGTTTGA+AGG - chr5_1:21901353-21901372 None:intergenic 25.0%
!! TTATAGATGGCTAAAGTTTT+TGG - chr5_1:21901439-21901458 None:intergenic 25.0%
!!! GATGATTGTTTTACAATTAG+TGG + chr5_1:21901598-21901617 Msa0723870:intron 25.0%
!! TAGAATCCACATATGTTTTA+AGG + chr5_1:21902252-21902271 Msa0723870:three_prime_UTR 25.0%
!!! TATTTTAAAGTTTCTCTACC+TGG - chr5_1:21902372-21902391 None:intergenic 25.0%
GTTTGGGAAATTAATGTTGA+CGG - chr5_1:21897734-21897753 None:intergenic 30.0%
! ATGAAGATGATGATGATTGT+GGG - chr5_1:21897764-21897783 None:intergenic 30.0%
! TTAGGGATTTGAAATTGGAA+TGG - chr5_1:21897800-21897819 None:intergenic 30.0%
!!! AATTTTAGGGTTTGTTTCAG+TGG - chr5_1:21897845-21897864 None:intergenic 30.0%
AACACATCGTTTACTCTAAA+CGG - chr5_1:21897962-21897981 None:intergenic 30.0%
! TTTTGCCGAAAGAAATATCA+TGG + chr5_1:21897987-21898006 Msa0723870:CDS 30.0%
! AATGGTTCTATTCAATGGAA+AGG + chr5_1:21898082-21898101 Msa0723870:CDS 30.0%
! ATTGCGTGTACAATTCATTT+TGG + chr5_1:21898238-21898257 Msa0723870:intron 30.0%
!! ACAATTCATTTTGGCATGTT+TGG + chr5_1:21898247-21898266 Msa0723870:intron 30.0%
! GCCTCATGTAGAATAAATTT+TGG - chr5_1:21898302-21898321 None:intergenic 30.0%
!! TTTCGCAAAATTTGAGTTGA+AGG - chr5_1:21898420-21898439 None:intergenic 30.0%
ATGAAGTGATGAACTATCTA+AGG - chr5_1:21898959-21898978 None:intergenic 30.0%
TAGATAGTTCATCACTTCAT+TGG + chr5_1:21898959-21898978 Msa0723870:intron 30.0%
AGATAGTTCATCACTTCATT+GGG + chr5_1:21898960-21898979 Msa0723870:intron 30.0%
AAATTCTCACTGTATTGTAC+AGG + chr5_1:21899372-21899391 Msa0723870:intron 30.0%
!!! TGTTCATTCTGGTGATTTTT+TGG + chr5_1:21899591-21899610 Msa0723870:CDS 30.0%
!!! TTTTGAGACACTTGAAAAGT+GGG + chr5_1:21899645-21899664 Msa0723870:CDS 30.0%
! AGACTAATGATATTCTGAGA+CGG - chr5_1:21899852-21899871 None:intergenic 30.0%
AGTTACTCTTACACAAACAA+TGG - chr5_1:21900169-21900188 None:intergenic 30.0%
TCTAACAAATAGCAATCAGT+TGG - chr5_1:21900305-21900324 None:intergenic 30.0%
GAAACAATTTGAATCATGAC+TGG + chr5_1:21900323-21900342 Msa0723870:intron 30.0%
AATAGTTTAGTCTATTTGGG+AGG + chr5_1:21900364-21900383 Msa0723870:intron 30.0%
ATAGTTTAGTCTATTTGGGA+GGG + chr5_1:21900365-21900384 Msa0723870:intron 30.0%
CTATTTACTAATGGTGTGTT+TGG - chr5_1:21900587-21900606 None:intergenic 30.0%
CTGAATGCACTATTTACTAA+TGG - chr5_1:21900596-21900615 None:intergenic 30.0%
CATTAGTAAATAGTGCATTC+AGG + chr5_1:21900594-21900613 Msa0723870:intron 30.0%
TAATTTCTGTCATGTCTATG+TGG + chr5_1:21900880-21900899 Msa0723870:CDS 30.0%
CAGAAACACATTGAGATTAT+AGG - chr5_1:21901110-21901129 None:intergenic 30.0%
CTATAATCTCAATGTGTTTC+TGG + chr5_1:21901108-21901127 Msa0723870:intron 30.0%
CATATTCAATACAACTTGTG+AGG - chr5_1:21901519-21901538 None:intergenic 30.0%
TACGATTACAGAAACTTAAG+TGG + chr5_1:21901553-21901572 Msa0723870:intron 30.0%
! TATAAAGAGGCTGGAATTTT+CGG + chr5_1:21901786-21901805 Msa0723870:CDS 30.0%
CATTCAAGTAACTGAATTCA+CGG + chr5_1:21901824-21901843 Msa0723870:CDS 30.0%
TGCAAACACTTCTCATATAT+AGG - chr5_1:21902170-21902189 None:intergenic 30.0%
GAATTTCAACCAACAATAGA+GGG - chr5_1:21902228-21902247 None:intergenic 30.0%
!!! AATCCACATATGTTTTAAGG+TGG + chr5_1:21902255-21902274 Msa0723870:three_prime_UTR 30.0%
TAACCACCTTAAAACATATG+TGG - chr5_1:21902261-21902280 None:intergenic 30.0%
! ACTGATAATGAAGAGAGTAT+CGG + chr5_1:21902298-21902317 Msa0723870:three_prime_UTR 30.0%
! TCTTTTCATATCACATTTCC+AGG + chr5_1:21902351-21902370 Msa0723870:three_prime_UTR 30.0%
GAAATTAATGTTGACGGTTG+CGG - chr5_1:21897728-21897747 None:intergenic 35.0%
! GATGAAGATGATGATGATTG+TGG - chr5_1:21897765-21897784 None:intergenic 35.0%
! GGGAATTAGGGATTTGAAAT+TGG - chr5_1:21897805-21897824 None:intergenic 35.0%
!!! GTGCATTTTTTGGGGAATTA+GGG - chr5_1:21897817-21897836 None:intergenic 35.0%
!!! TGGATTTGGTGCATTTTTTG+GGG - chr5_1:21897825-21897844 None:intergenic 35.0%
!!! GTGGATTTGGTGCATTTTTT+GGG - chr5_1:21897826-21897845 None:intergenic 35.0%
!!! AGTGGATTTGGTGCATTTTT+TGG - chr5_1:21897827-21897846 None:intergenic 35.0%
! TGGAGAGAGGTTGAATTTTA+GGG - chr5_1:21897858-21897877 None:intergenic 35.0%
! TTGGAGAGAGGTTGAATTTT+AGG - chr5_1:21897859-21897878 None:intergenic 35.0%
TAGAGTAAACGATGTGTTAC+CGG + chr5_1:21897964-21897983 Msa0723870:CDS 35.0%
GATATTTCTTTCGGCAAAAC+CGG - chr5_1:21897986-21898005 None:intergenic 35.0%
ACAGGCCATGATATTTCTTT+CGG - chr5_1:21897995-21898014 None:intergenic 35.0%
!! GATTTGCTTCCTTCTTTTGT+TGG + chr5_1:21898040-21898059 Msa0723870:CDS 35.0%
TCTGTCACTCCGTATAATAA+TGG + chr5_1:21898064-21898083 Msa0723870:CDS 35.0%
AAACTTGAGTTTACTCACCA+TGG + chr5_1:21898130-21898149 Msa0723870:CDS 35.0%
TGAAACCTTGAGATAGAGAA+CGG - chr5_1:21898185-21898204 None:intergenic 35.0%
TGATGCTACTATGATCACTT+GGG + chr5_1:21898605-21898624 Msa0723870:intron 35.0%
TCTCAAAGATTGAATCTGAG+TGG + chr5_1:21898737-21898756 Msa0723870:intron 35.0%
AGATCAAACGTTGCAAAAAG+GGG - chr5_1:21898791-21898810 None:intergenic 35.0%
CAGATCAAACGTTGCAAAAA+GGG - chr5_1:21898792-21898811 None:intergenic 35.0%
ACAGATCAAACGTTGCAAAA+AGG - chr5_1:21898793-21898812 None:intergenic 35.0%
! GATATCTTATTTATGGGGAC+TGG + chr5_1:21898927-21898946 Msa0723870:intron 35.0%
GATAGTTCATCACTTCATTG+GGG + chr5_1:21898961-21898980 Msa0723870:intron 35.0%
ATAGTTCATCACTTCATTGG+GGG + chr5_1:21898962-21898981 Msa0723870:intron 35.0%
TTAATCAATCCAACGAACAG+CGG - chr5_1:21899050-21899069 None:intergenic 35.0%
!! TTTTTGGTCGTTTACAGACA+GGG + chr5_1:21899148-21899167 Msa0723870:intron 35.0%
!! TGTCTGAAACTTTTTGTTGG+TGG + chr5_1:21899333-21899352 Msa0723870:intron 35.0%
AGAGTTCCTAAAGAAACACA+TGG + chr5_1:21899513-21899532 Msa0723870:CDS 35.0%
GAGTTCCTAAAGAAACACAT+GGG + chr5_1:21899514-21899533 Msa0723870:CDS 35.0%
!!! GTTTTGAGACACTTGAAAAG+TGG + chr5_1:21899644-21899663 Msa0723870:CDS 35.0%
AGGATGAAATGGGAAATTTG+TGG + chr5_1:21899707-21899726 Msa0723870:CDS 35.0%
GGATGAAATGGGAAATTTGT+GGG + chr5_1:21899708-21899727 Msa0723870:CDS 35.0%
GCCGCTGTATTACTTTATTA+AGG + chr5_1:21900270-21900289 Msa0723870:intron 35.0%
TAGTTTAGTCTATTTGGGAG+GGG + chr5_1:21900366-21900385 Msa0723870:intron 35.0%
TTCAGCATTGCAGAAATACA+GGG - chr5_1:21900674-21900693 None:intergenic 35.0%
TCTCTATTCTTCATTTCCTG+TGG + chr5_1:21900724-21900743 Msa0723870:intron 35.0%
GTATTGTATTTGAGAACCAC+AGG - chr5_1:21900743-21900762 None:intergenic 35.0%
!! CTTGTAGGTTCTAGTTCTTT+GGG + chr5_1:21900795-21900814 Msa0723870:intron 35.0%
ATTGAGAGGACATATCTACA+TGG + chr5_1:21901179-21901198 Msa0723870:intron 35.0%
! AGTCTTCATGCCTTGATTTT+TGG + chr5_1:21901258-21901277 Msa0723870:intron 35.0%
CATTCCAGAACAAGATGATT+GGG + chr5_1:21901713-21901732 Msa0723870:CDS 35.0%
CTTTCAATGTATAAAGAGGC+TGG + chr5_1:21901777-21901796 Msa0723870:CDS 35.0%
ACTTGAATGGAGCTAGAAAT+GGG - chr5_1:21901813-21901832 None:intergenic 35.0%
TACTTGAATGGAGCTAGAAA+TGG - chr5_1:21901814-21901833 None:intergenic 35.0%
CGTGAATTCAGTTACTTGAA+TGG - chr5_1:21901826-21901845 None:intergenic 35.0%
TCCTATATTCACCAAGAATC+TGG - chr5_1:21902028-21902047 None:intergenic 35.0%
GATTCTTGGTGAATATAGGA+TGG + chr5_1:21902028-21902047 Msa0723870:CDS 35.0%
TGAATATAGGATGGAATTCC+CGG + chr5_1:21902037-21902056 Msa0723870:CDS 35.0%
TGCTCATTCATATTGGCATA+AGG - chr5_1:21902080-21902099 None:intergenic 35.0%
CGAATTTCAACCAACAATAG+AGG - chr5_1:21902229-21902248 None:intergenic 35.0%
!! GAAAGAGAGTGTTAGAGAAT+GGG + chr5_1:21902320-21902339 Msa0723870:three_prime_UTR 35.0%
!! AAAGAGAGTGTTAGAGAATG+GGG + chr5_1:21902321-21902340 Msa0723870:three_prime_UTR 35.0%
GGAGAATGAGAAATGAAACG+TGG - chr5_1:21897698-21897717 None:intergenic 40.0%
! GATGATGATGATTGTGGGAA+GGG - chr5_1:21897759-21897778 None:intergenic 40.0%
! AGATGATGATGATTGTGGGA+AGG - chr5_1:21897760-21897779 None:intergenic 40.0%
!!! GGTGCATTTTTTGGGGAATT+AGG - chr5_1:21897818-21897837 None:intergenic 40.0%
! AGGGTTTGTTTCAGTGGATT+TGG - chr5_1:21897839-21897858 None:intergenic 40.0%
AGAGGATGAAAAGGAGACAT+TGG - chr5_1:21897878-21897897 None:intergenic 40.0%
ACATCGCTGTTATCGAGTTT+CGG + chr5_1:21897920-21897939 Msa0723870:CDS 40.0%
GTGACAGATCCAACAAAAGA+AGG - chr5_1:21898052-21898071 None:intergenic 40.0%
CTGATGCTACTATGATCACT+TGG + chr5_1:21898604-21898623 Msa0723870:intron 40.0%
CTTTATCATCAGTCAAGTGC+TGG + chr5_1:21898685-21898704 Msa0723870:intron 40.0%
!!! GTTTTTGGTCGTTTACAGAC+AGG + chr5_1:21899147-21899166 Msa0723870:intron 40.0%
! TTTTGGTCGTTTACAGACAG+GGG + chr5_1:21899149-21899168 Msa0723870:intron 40.0%
GAAAACATACAGATCCATGC+AGG - chr5_1:21899190-21899209 None:intergenic 40.0%
! ATGTTTTCGCAACACCATAC+CGG + chr5_1:21899202-21899221 Msa0723870:CDS 40.0%
AACACCATACCGGATAACAT+GGG + chr5_1:21899212-21899231 Msa0723870:CDS 40.0%
AGTAGTAGTCCCATGTTATC+CGG - chr5_1:21899224-21899243 None:intergenic 40.0%
! ATACCTTGAAGCTTGATTCG+TGG + chr5_1:21899259-21899278 Msa0723870:CDS 40.0%
! TACCTTGAAGCTTGATTCGT+GGG + chr5_1:21899260-21899279 Msa0723870:CDS 40.0%
ATTACATATTCCAGCTCTGC+AGG - chr5_1:21899291-21899310 None:intergenic 40.0%
ATTGTACAGGTAAAGCAGCA+TGG + chr5_1:21899385-21899404 Msa0723870:intron 40.0%
TTGTACAGGTAAAGCAGCAT+GGG + chr5_1:21899386-21899405 Msa0723870:intron 40.0%
TCTATTCTCGAACACTGCAT+GGG + chr5_1:21899474-21899493 Msa0723870:CDS 40.0%
GGAACTCTAAATTGGAACTC+TGG - chr5_1:21899501-21899520 None:intergenic 40.0%
TTGCTCCCATGTGTTTCTTT+AGG - chr5_1:21899522-21899541 None:intergenic 40.0%
ACACTTGAAAAGTGGGTAAC+TGG + chr5_1:21899652-21899671 Msa0723870:CDS 40.0%
AGTCTGCTTGAAGGATGAAA+TGG + chr5_1:21899696-21899715 Msa0723870:CDS 40.0%
GTCTGCTTGAAGGATGAAAT+GGG + chr5_1:21899697-21899716 Msa0723870:CDS 40.0%
GAAATGGGAAATTTGTGGGT+TGG + chr5_1:21899712-21899731 Msa0723870:CDS 40.0%
!! AATTTGTGGGTTGGTGAATC+TGG + chr5_1:21899721-21899740 Msa0723870:CDS 40.0%
!! ATTTGTGGGTTGGTGAATCT+GGG + chr5_1:21899722-21899741 Msa0723870:CDS 40.0%
ATCTGGGCATGAGAATGAAA+AGG + chr5_1:21899738-21899757 Msa0723870:CDS 40.0%
GCAGGGTGAAGAAATAATTG+TGG + chr5_1:21899906-21899925 Msa0723870:intron 40.0%
TGGTAATTCCATGGCATGAA+TGG + chr5_1:21899926-21899945 Msa0723870:CDS 40.0%
TAATTCCATGGCATGAATGG+TGG + chr5_1:21899929-21899948 Msa0723870:CDS 40.0%
AATTCCATGGCATGAATGGT+GGG + chr5_1:21899930-21899949 Msa0723870:CDS 40.0%
! TTGAATTTTGCACGCAACTC+TGG - chr5_1:21900009-21900028 None:intergenic 40.0%
AATACCAAGTGAGCATCAAG+AGG - chr5_1:21900138-21900157 None:intergenic 40.0%
!! TCATGACTGGTTTAGAGTCT+TGG + chr5_1:21900336-21900355 Msa0723870:intron 40.0%
!! CATGACTGGTTTAGAGTCTT+GGG + chr5_1:21900337-21900356 Msa0723870:intron 40.0%
AGTTTAGTCTATTTGGGAGG+GGG + chr5_1:21900367-21900386 Msa0723870:intron 40.0%
!!! GGATTTTGGATGGTTTTGGA+GGG + chr5_1:21900388-21900407 Msa0723870:intron 40.0%
GTTCAGCATTGCAGAAATAC+AGG - chr5_1:21900675-21900694 None:intergenic 40.0%
!! TACCAATGTTGTAGCCTTGT+AGG + chr5_1:21900780-21900799 Msa0723870:intron 40.0%
AACCTACAAGGCTACAACAT+TGG - chr5_1:21900785-21900804 None:intergenic 40.0%
CCAAAGAACTAGAACCTACA+AGG - chr5_1:21900797-21900816 None:intergenic 40.0%
!! CCTTGTAGGTTCTAGTTCTT+TGG + chr5_1:21900794-21900813 Msa0723870:intron 40.0%
!! GGAATGAAGCGTTGAATAAG+CGG + chr5_1:21900937-21900956 Msa0723870:CDS 40.0%
!! AAGCGTTGAATAAGCGGTTA+GGG + chr5_1:21900943-21900962 Msa0723870:CDS 40.0%
TTTCATGTGGAACAATCCTC+TGG + chr5_1:21901037-21901056 Msa0723870:intron 40.0%
!!! CATTACTGTTTTGATGGCGA+TGG + chr5_1:21901287-21901306 Msa0723870:intron 40.0%
TCTCGTTTGTTTGTGCTTTC+AGG + chr5_1:21901623-21901642 Msa0723870:intron 40.0%
!! CCAATCATCTTGTTCTGGAA+TGG - chr5_1:21901715-21901734 None:intergenic 40.0%
CCATTCCAGAACAAGATGAT+TGG + chr5_1:21901712-21901731 Msa0723870:CDS 40.0%
TAGACCCAATCATCTTGTTC+TGG - chr5_1:21901720-21901739 None:intergenic 40.0%
TTCGTGATGCATACATGCTT+AGG + chr5_1:21901934-21901953 Msa0723870:CDS 40.0%
ATCAAACACGTCTACCAAGA+TGG + chr5_1:21901970-21901989 Msa0723870:CDS 40.0%
TTCTCATTGTTGCACCATCT+TGG - chr5_1:21901987-21902006 None:intergenic 40.0%
GCCAGATTCTTGGTGAATAT+AGG + chr5_1:21902024-21902043 Msa0723870:CDS 40.0%
GAATATAGGATGGAATTCCC+GGG + chr5_1:21902038-21902057 Msa0723870:CDS 40.0%
AGGACAGTGCTCATTCATAT+TGG - chr5_1:21902087-21902106 None:intergenic 40.0%
CGATCAACCTAACATTGTGA+AGG - chr5_1:21902134-21902153 None:intergenic 40.0%
!! GGAAAGAGAGTGTTAGAGAA+TGG + chr5_1:21902319-21902338 Msa0723870:three_prime_UTR 40.0%
GATTGTGGGAAGGGTAGTTT+GGG - chr5_1:21897750-21897769 None:intergenic 45.0%
TGATTGTGGGAAGGGTAGTT+TGG - chr5_1:21897751-21897770 None:intergenic 45.0%
GAAAAGGAGACATTGGAGAG+AGG - chr5_1:21897871-21897890 None:intergenic 45.0%
! TCCTTTTCATCCTCTTCTCG+CGG + chr5_1:21897883-21897902 Msa0723870:CDS 45.0%
CTTGAGTTTACTCACCATGG+TGG + chr5_1:21898133-21898152 Msa0723870:CDS 45.0%
!! TTACCCCTCTTCTAGTTCCA+CGG + chr5_1:21898572-21898591 Msa0723870:intron 45.0%
GAACAGCGGCATCTAATTTC+TGG - chr5_1:21899036-21899055 None:intergenic 45.0%
AATTAGATGCCGCTGTTCGT+TGG + chr5_1:21899038-21899057 Msa0723870:intron 45.0%
CAACACCATACCGGATAACA+TGG + chr5_1:21899211-21899230 Msa0723870:CDS 45.0%
TAGTCCCATGTTATCCGGTA+TGG - chr5_1:21899219-21899238 None:intergenic 45.0%
TTCCCACGAATCAAGCTTCA+AGG - chr5_1:21899265-21899284 None:intergenic 45.0%
TGTACAGGTAAAGCAGCATG+GGG + chr5_1:21899387-21899406 Msa0723870:intron 45.0%
CATGCAGTGTTCGAGAATAG+AGG - chr5_1:21899475-21899494 None:intergenic 45.0%
CTCTATTCTCGAACACTGCA+TGG + chr5_1:21899473-21899492 Msa0723870:CDS 45.0%
CTATTCTCGAACACTGCATG+GGG + chr5_1:21899475-21899494 Msa0723870:CDS 45.0%
TTGAGAAACGCATTCAGCCT+TGG + chr5_1:21899545-21899564 Msa0723870:CDS 45.0%
GATCCTGCAGATGTTCATTC+TGG + chr5_1:21899580-21899599 Msa0723870:CDS 45.0%
TCACCAGAATGAACATCTGC+AGG - chr5_1:21899586-21899605 None:intergenic 45.0%
TCATACAGCAGTCTGCTTGA+AGG + chr5_1:21899687-21899706 Msa0723870:CDS 45.0%
TGGGAAGCTGCTCTTAAAGA+TGG + chr5_1:21899949-21899968 Msa0723870:CDS 45.0%
AAGCAATGCTATCTGTGGGT+TGG - chr5_1:21899977-21899996 None:intergenic 45.0%
GAGGAAGCAATGCTATCTGT+GGG - chr5_1:21899981-21900000 None:intergenic 45.0%
AGAGGAAGCAATGCTATCTG+TGG - chr5_1:21899982-21900001 None:intergenic 45.0%
AATTCAACTCCACTGCTGCA+TGG + chr5_1:21900022-21900041 Msa0723870:CDS 45.0%
ATTCAACTCCACTGCTGCAT+GGG + chr5_1:21900023-21900042 Msa0723870:CDS 45.0%
! TCTATTTGGGAGGGGGATTT+TGG + chr5_1:21900374-21900393 Msa0723870:intron 45.0%
! AGGGGGATTTTGGATGGTTT+TGG + chr5_1:21900384-21900403 Msa0723870:intron 45.0%
!!! GGGATTTTGGATGGTTTTGG+AGG + chr5_1:21900387-21900406 Msa0723870:intron 45.0%
CTAATGGTGTGTTTGGGAGA+GGG - chr5_1:21900580-21900599 None:intergenic 45.0%
ACTAATGGTGTGTTTGGGAG+AGG - chr5_1:21900581-21900600 None:intergenic 45.0%
GTGATGTACGTGTTATGTGC+AGG + chr5_1:21900857-21900876 Msa0723870:intron 45.0%
CTGTCATGTCTATGTGGACA+AGG + chr5_1:21900886-21900905 Msa0723870:CDS 45.0%
CACATGTTTGCAGCATAAGC+TGG - chr5_1:21900918-21900937 None:intergenic 45.0%
CAGCTTATGCTGCAAACATG+TGG + chr5_1:21900916-21900935 Msa0723870:CDS 45.0%
!! GAAGCGTTGAATAAGCGGTT+AGG + chr5_1:21900942-21900961 Msa0723870:CDS 45.0%
CAATCCTCTGGCAAAACAAG+TGG + chr5_1:21901049-21901068 Msa0723870:intron 45.0%
!!! ATGTCCACTTGTTTTGCCAG+AGG - chr5_1:21901056-21901075 None:intergenic 45.0%
!!! TTTTGATGGCGATGGCCAAA+AGG + chr5_1:21901295-21901314 Msa0723870:intron 45.0%
! TACTTGAGACTGAGAAGCGT+GGG + chr5_1:21901667-21901686 Msa0723870:CDS 45.0%
GATGATTGGGTCTACAGTGA+CGG + chr5_1:21901726-21901745 Msa0723870:CDS 45.0%
CGGAAAGTCAACAACATGTG+TGG + chr5_1:21901746-21901765 Msa0723870:CDS 45.0%
CTTCCATTCTGCCAGATTCT+TGG + chr5_1:21902014-21902033 Msa0723870:CDS 45.0%
TCACCAAGAATCTGGCAGAA+TGG - chr5_1:21902020-21902039 None:intergenic 45.0%
ATTCCCGGGCTATAACACTT+TGG + chr5_1:21902052-21902071 Msa0723870:CDS 45.0%
! GAACCAAAGTGTTATAGCCC+GGG - chr5_1:21902058-21902077 None:intergenic 45.0%
! GGAACCAAAGTGTTATAGCC+CGG - chr5_1:21902059-21902078 None:intergenic 45.0%
! CCTATCGTAAGTTGGAGGAA+GGG - chr5_1:21902111-21902130 None:intergenic 45.0%
TGTGAAGGCCTATCGTAAGT+TGG - chr5_1:21902119-21902138 None:intergenic 45.0%
CGATAGGCCTTCACAATGTT+AGG + chr5_1:21902124-21902143 Msa0723870:CDS 45.0%
ACAATAGAGGGAATGTCGCA+AGG - chr5_1:21902216-21902235 None:intergenic 45.0%
TGCGACATTCCCTCTATTGT+TGG + chr5_1:21902216-21902235 Msa0723870:three_prime_UTR 45.0%
ACCGCGAGAAGAGGATGAAA+AGG - chr5_1:21897887-21897906 None:intergenic 50.0%
ACGATCAAAACCGCGAGAAG+AGG - chr5_1:21897896-21897915 None:intergenic 50.0%
GAGTTTACTCACCATGGTGG+CGG + chr5_1:21898136-21898155 Msa0723870:CDS 50.0%
!! TGGTGCCGTTCTCTATCTCA+AGG + chr5_1:21898177-21898196 Msa0723870:CDS 50.0%
TCGACCGTGGAACTAGAAGA+GGG - chr5_1:21898579-21898598 None:intergenic 50.0%
ATCGACCGTGGAACTAGAAG+AGG - chr5_1:21898580-21898599 None:intergenic 50.0%
AGCATCAGTGATATCGACCG+TGG - chr5_1:21898592-21898611 None:intergenic 50.0%
TCTGTGTTTCTCATGCCAGC+AGG + chr5_1:21899412-21899431 Msa0723870:CDS 50.0%
GGATCAATAGTTGCACGCCA+AGG - chr5_1:21899565-21899584 None:intergenic 50.0%
TTGGCTGTGTCGAAAATCCG+CGG + chr5_1:21899610-21899629 Msa0723870:CDS 50.0%
TGTCGAAAATCCGCGGTAGA+TGG + chr5_1:21899617-21899636 Msa0723870:CDS 50.0%
GTCGAAAATCCGCGGTAGAT+GGG + chr5_1:21899618-21899637 Msa0723870:CDS 50.0%
TCGAAAATCCGCGGTAGATG+GGG + chr5_1:21899619-21899638 Msa0723870:CDS 50.0%
TGGGTAACTGGTGCATTTGC+TGG + chr5_1:21899664-21899683 Msa0723870:CDS 50.0%
TCGATCGTCTGTCATTGTGC+AGG + chr5_1:21899888-21899907 Msa0723870:intron 50.0%
CGATCGTCTGTCATTGTGCA+GGG + chr5_1:21899889-21899908 Msa0723870:intron 50.0%
AGCATGTCTGGCAAGCCATA+TGG + chr5_1:21900057-21900076 Msa0723870:CDS 50.0%
AAGTGAGCATCAAGAGGTGG+AGG - chr5_1:21900132-21900151 None:intergenic 50.0%
TCCACCTCTTGATGCTCACT+TGG + chr5_1:21900131-21900150 Msa0723870:CDS 50.0%
ACCAAGTGAGCATCAAGAGG+TGG - chr5_1:21900135-21900154 None:intergenic 50.0%
! TTTGGGAGGGGGATTTTGGA+TGG + chr5_1:21900378-21900397 Msa0723870:intron 50.0%
TTTGGGAGAGGGATGTTGGA+GGG - chr5_1:21900569-21900588 None:intergenic 50.0%
TGTGTTTGGGAGAGGGATGT+TGG - chr5_1:21900573-21900592 None:intergenic 50.0%
CTACTTGAGACTGAGAAGCG+TGG + chr5_1:21901666-21901685 Msa0723870:CDS 50.0%
AGAGATTCATGCCATCGCCA+AGG - chr5_1:21901862-21901881 None:intergenic 50.0%
! TCGTAAGTTGGAGGAAGGGA+AGG - chr5_1:21902107-21902126 None:intergenic 50.0%
CCCTTCCTCCAACTTACGAT+AGG + chr5_1:21902108-21902127 Msa0723870:CDS 50.0%
! GCCTATCGTAAGTTGGAGGA+AGG - chr5_1:21902112-21902131 None:intergenic 50.0%
! GAAGGCCTATCGTAAGTTGG+AGG - chr5_1:21902116-21902135 None:intergenic 50.0%
GAGTGTTAGAGAATGGGGAG+TGG + chr5_1:21902326-21902345 Msa0723870:three_prime_UTR 50.0%
! GTTGACGGTTGCGGTGTTGA+TGG - chr5_1:21897719-21897738 None:intergenic 55.0%
!! TTTACTCACCATGGTGGCGG+TGG + chr5_1:21898139-21898158 Msa0723870:CDS 55.0%
! TGGCGGTGGTGATTCTGGTT+TGG + chr5_1:21898153-21898172 Msa0723870:CDS 55.0%
!! GGCGGTGGTGATTCTGGTTT+GGG + chr5_1:21898154-21898173 Msa0723870:CDS 55.0%
!! GGTGGTGATTCTGGTTTGGG+TGG + chr5_1:21898157-21898176 Msa0723870:CDS 55.0%
CGACCGTGGAACTAGAAGAG+GGG - chr5_1:21898578-21898597 None:intergenic 55.0%
TCTCATGCCAGCAGGAATGC+TGG + chr5_1:21899420-21899439 Msa0723870:CDS 55.0%
CTCATGCCAGCAGGAATGCT+GGG + chr5_1:21899421-21899440 Msa0723870:CDS 55.0%
AAAATCCGCGGTAGATGGGG+AGG + chr5_1:21899622-21899641 Msa0723870:CDS 55.0%
CAAAACCTCCCCATCTACCG+CGG - chr5_1:21899630-21899649 None:intergenic 55.0%
GCTTCCCACCATTCATGCCA+TGG - chr5_1:21899937-21899956 None:intergenic 55.0%
GCACGCAACTCTGGATGTAG+AGG - chr5_1:21900000-21900019 None:intergenic 55.0%
TTGGGAGAGGGATGTTGGAG+GGG - chr5_1:21900568-21900587 None:intergenic 55.0%
GTTTGGGAGAGGGATGTTGG+AGG - chr5_1:21900570-21900589 None:intergenic 55.0%
GAATAAGCGGTTAGGGACCG+AGG + chr5_1:21900950-21900969 Msa0723870:CDS 55.0%
CACGGTAAGTCCTGTTGCCT+TGG + chr5_1:21901842-21901861 Msa0723870:intron 55.0%
AAGTCCTGTTGCCTTGGCGA+TGG + chr5_1:21901848-21901867 Msa0723870:intron 55.0%
CAGAATCACCACCGCCACCA+TGG - chr5_1:21898150-21898169 None:intergenic 60.0%
!! CATGGTGGCGGTGGTGATTC+TGG + chr5_1:21898148-21898167 Msa0723870:CDS 60.0%
! AGACAGGGGAAGCACACAGC+TGG + chr5_1:21899163-21899182 Msa0723870:intron 60.0%
AGCACACAGCTGGACCTGCA+TGG + chr5_1:21899173-21899192 Msa0723870:CDS 60.0%
AGTGTGCCCAGCATTCCTGC+TGG - chr5_1:21899430-21899449 None:intergenic 60.0%
CGCATACTCCCATGCAGCAG+TGG - chr5_1:21900034-21900053 None:intergenic 60.0%
! CTGCTGCATGGGAGTATGCG+CGG + chr5_1:21900034-21900053 Msa0723870:CDS 60.0%
GAGTATGCGCGGAGCATGTC+TGG + chr5_1:21900045-21900064 Msa0723870:CDS 60.0%
AGAGGGATGTTGGAGGGGAG+GGG - chr5_1:21900563-21900582 None:intergenic 60.0%
GAGAGGGATGTTGGAGGGGA+GGG - chr5_1:21900564-21900583 None:intergenic 60.0%
CATGCCATCGCCAAGGCAAC+AGG - chr5_1:21901855-21901874 None:intergenic 60.0%
GTGGGAAGAGCCTGCAGAGC+TGG + chr5_1:21899278-21899297 Msa0723870:CDS 65.0%
GATGTTGGAGGGGAGGGGAG+GGG - chr5_1:21900558-21900577 None:intergenic 65.0%
GGATGTTGGAGGGGAGGGGA+GGG - chr5_1:21900559-21900578 None:intergenic 65.0%
GGAGAGGGATGTTGGAGGGG+AGG - chr5_1:21900565-21900584 None:intergenic 65.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr5_1:21900554-21900573 None:intergenic 70.0%
GGGATGTTGGAGGGGAGGGG+AGG - chr5_1:21900560-21900579 None:intergenic 70.0%
TGGAGGGGAGGGGAGGGGAG+GGG - chr5_1:21900553-21900572 None:intergenic 75.0%
GTTGGAGGGGAGGGGAGGGG+AGG - chr5_1:21900555-21900574 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 21897695 21902404 21897695 ID=Msa0723870;Name=Msa0723870
chr5_1 mRNA 21897695 21902404 21897695 ID=Msa0723870-mRNA-1;Parent=Msa0723870;Name=Msa0723870-mRNA-1;_AED=0.14;_eAED=0.14;_QI=183|1|1|1|0.85|0.75|8|213|525
chr5_1 exon 21897695 21898198 21897695 ID=Msa0723870-mRNA-1:exon:8327;Parent=Msa0723870-mRNA-1
chr5_1 exon 21899165 21899305 21899165 ID=Msa0723870-mRNA-1:exon:8328;Parent=Msa0723870-mRNA-1
chr5_1 exon 21899394 21899759 21899394 ID=Msa0723870-mRNA-1:exon:8329;Parent=Msa0723870-mRNA-1
chr5_1 exon 21899910 21900152 21899910 ID=Msa0723870-mRNA-1:exon:8330;Parent=Msa0723870-mRNA-1
chr5_1 exon 21900879 21900971 21900879 ID=Msa0723870-mRNA-1:exon:8331;Parent=Msa0723870-mRNA-1
chr5_1 exon 21901645 21901845 21901645 ID=Msa0723870-mRNA-1:exon:8332;Parent=Msa0723870-mRNA-1
chr5_1 exon 21901933 21902159 21901933 ID=Msa0723870-mRNA-1:exon:8333;Parent=Msa0723870-mRNA-1
chr5_1 exon 21902206 21902404 21902206 ID=Msa0723870-mRNA-1:exon:8334;Parent=Msa0723870-mRNA-1
chr5_1 five_prime_UTR 21897695 21897877 21897695 ID=Msa0723870-mRNA-1:five_prime_utr;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21897878 21898198 21897878 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21899165 21899305 21899165 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21899394 21899759 21899394 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21899910 21900152 21899910 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21900879 21900971 21900879 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21901645 21901845 21901645 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 CDS 21901933 21902145 21901933 ID=Msa0723870-mRNA-1:cds;Parent=Msa0723870-mRNA-1
chr5_1 three_prime_UTR 21902146 21902159 21902146 ID=Msa0723870-mRNA-1:three_prime_utr;Parent=Msa0723870-mRNA-1
chr5_1 three_prime_UTR 21902206 21902404 21902206 ID=Msa0723870-mRNA-1:three_prime_utr;Parent=Msa0723870-mRNA-1
Gene Sequence

>Msa0723870

ATGTCTCCTTTTCATCCTCTTCTCGCGGTTTTGATCGTAACAACATCGCTGTTATCGAGTTTCGGTGATTCTCTTAAAGTTCCGTTTAGAGTAAACGATGTGTTACCGGTTTTGCCGAAAGAAATATCATGGCCTGTGTTGAATAATTTTCATAGTGCTGTTGATTTGCTTCCTTCTTTTGTTGGATCTGTCACTCCGTATAATAATGGTTCTATTCAATGGAAAGGTGCTTGCTTTTATGAAAATCAAGCTAAACTTGAGTTTACTCACCATGGTGGCGGTGGTGATTCTGGTTTGGGTGGTGCCGTTCTCTATCTCAAGACAGGGGAAGCACACAGCTGGACCTGCATGGATCTGTATGTTTTCGCAACACCATACCGGATAACATGGGACTACTACTTCTCTGCGCGAGAACATACCTTGAAGCTTGATTCGTGGGAAGAGCCTGCAGAGCTGGAATATGTAAAGCAGCATGGGGTTTCTGTGTTTCTCATGCCAGCAGGAATGCTGGGCACACTGCTTTCTCTAGTCGACGTGTTGCCTCTATTCTCGAACACTGCATGGGGCCAGAGTTCCAATTTAGAGTTCCTAAAGAAACACATGGGAGCAACATTTGAGAAACGCATTCAGCCTTGGCGTGCAACTATTGATCCTGCAGATGTTCATTCTGGTGATTTTTTGGCTGTGTCGAAAATCCGCGGTAGATGGGGAGGTTTTGAGACACTTGAAAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTCTGCTTGAAGGATGAAATGGGAAATTTGTGGGTTGGTGAATCTGGGCATGAGAATGAAAAGGGTGAAGAAATAATTGTGGTAATTCCATGGCATGAATGGTGGGAAGCTGCTCTTAAAGATGGTTCCAACCCACAGATAGCATTGCTTCCTCTACATCCAGAGTTGCGTGCAAAATTCAACTCCACTGCTGCATGGGAGTATGCGCGGAGCATGTCTGGCAAGCCATATGGTTATCACAATATGATTTTCAGTTGGATTGACACAGTAGCTGACAACTATCCTCCACCTCTTGATGCTCACTTGGTAATTTCTGTCATGTCTATGTGGACAAGGATGCAGCCAGCTTATGCTGCAAACATGTGGAATGAAGCGTTGAATAAGCGGTTAGGGACCGAGGATTTAGACTTGCACGACATTCTACTTGAGACTGAGAAGCGTGGGATAGCTTTTGATGAATTACTTGCCATTCCAGAACAAGATGATTGGGTCTACAGTGACGGAAAGTCAACAACATGTGTGGCATTTATTCTTTCAATGTATAAAGAGGCTGGAATTTTCGGTCCCATTTCTAGCTCCATTCAAGTAACTGAATTCACGATTCGTGATGCATACATGCTTAGGATTTTTGAAGATAATCAAACACGTCTACCAAGATGGTGCAACAATGAGAATGACAAGCTTCCATTCTGCCAGATTCTTGGTGAATATAGGATGGAATTCCCGGGCTATAACACTTTGGTTCCTTATGCCAATATGAATGAGCACTGTCCTTCCCTTCCTCCAACTTACGATAGGCCTTCACAATGTTAG

Protein sequence

>Msa0723870

MSPFHPLLAVLIVTTSLLSSFGDSLKVPFRVNDVLPVLPKEISWPVLNNFHSAVDLLPSFVGSVTPYNNGSIQWKGACFYENQAKLEFTHHGGGGDSGLGGAVLYLKTGEAHSWTCMDLYVFATPYRITWDYYFSAREHTLKLDSWEEPAELEYVKQHGVSVFLMPAGMLGTLLSLVDVLPLFSNTAWGQSSNLEFLKKHMGATFEKRIQPWRATIDPADVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDEMGNLWVGESGHENEKGEEIIVVIPWHEWWEAALKDGSNPQIALLPLHPELRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTVADNYPPPLDAHLVISVMSMWTRMQPAYAANMWNEALNKRLGTEDLDLHDILLETEKRGIAFDELLAIPEQDDWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIFEDNQTRLPRWCNNENDKLPFCQILGEYRMEFPGYNTLVPYANMNEHCPSLPPTYDRPSQC*