Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094600 | XP_003610112.1 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.32e-57 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094600 | sp|Q9SUM2|RUXF_ARATH | 87.500 | 88 | 11 | 0 | 1 | 88 | 1 | 88 | 2.38e-52 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094600 | G7JVF0 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 2.07e-57 | 180 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003300 | Msa0094600 | -0.829794 | 4.215983e-55 | -8.615850e-47 |
| Msa0029850 | Msa0094600 | -0.801952 | 7.063872e-49 | -8.615850e-47 |
| Msa0050930 | Msa0094600 | -0.852005 | 6.130121e-61 | -8.615850e-47 |
| Msa0094600 | Msa0144790 | -0.811391 | 7.166377e-51 | -8.615850e-47 |
| Msa0094600 | Msa0169820 | -0.801299 | 9.612740e-49 | -8.615850e-47 |
| Msa0094600 | Msa0170140 | -0.800903 | 1.158701e-48 | -8.615850e-47 |
| Msa0094600 | Msa0183010 | 0.818632 | 1.771418e-52 | -8.615850e-47 |
| Msa0094600 | Msa0230640 | 0.824647 | 7.206702e-54 | -8.615850e-47 |
| Msa0094600 | Msa0277420 | -0.824344 | 8.495191e-54 | -8.615850e-47 |
| Msa0094600 | Msa0317270 | -0.811251 | 7.684958e-51 | -8.615850e-47 |
| Msa0094600 | Msa0350320 | 0.804830 | 1.789728e-49 | -8.615850e-47 |
| Msa0094600 | Msa0354800 | 0.801620 | 8.261152e-49 | -8.615850e-47 |
| Msa0094600 | Msa0376590 | -0.816650 | 4.956852e-52 | -8.615850e-47 |
| Msa0094600 | Msa0377610 | 0.825745 | 3.963745e-54 | -8.615850e-47 |
| Msa0094600 | Msa0426820 | 0.802134 | 6.478858e-49 | -8.615850e-47 |
| Msa0094600 | Msa0436370 | -0.845310 | 4.399204e-59 | -8.615850e-47 |
| Msa0094600 | Msa0444750 | 0.849494 | 3.120153e-60 | -8.615850e-47 |
| Msa0094600 | Msa0452810 | 0.800541 | 1.373172e-48 | -8.615850e-47 |
| Msa0094600 | Msa0458440 | -0.822475 | 2.322358e-53 | -8.615850e-47 |
| Msa0094600 | Msa0467740 | 0.811760 | 5.957807e-51 | -8.615850e-47 |
| Msa0094600 | Msa0467930 | -0.850257 | 1.908844e-60 | -8.615850e-47 |
| Msa0094600 | Msa0476880 | -0.830311 | 3.154590e-55 | -8.615850e-47 |
| Msa0094600 | Msa0514130 | 0.810308 | 1.229481e-50 | -8.615850e-47 |
| Msa0094600 | Msa0516370 | -0.809953 | 1.466064e-50 | -8.615850e-47 |
| Msa0094600 | Msa0542480 | -0.814948 | 1.187798e-51 | -8.615850e-47 |
| Msa0094600 | Msa0570640 | -0.805389 | 1.366537e-49 | -8.615850e-47 |
| Msa0094600 | Msa0572480 | -0.833342 | 5.634008e-56 | -8.615850e-47 |
| Msa0094600 | Msa0574850 | -0.801374 | 9.281797e-49 | -8.615850e-47 |
| Msa0094600 | Msa0578970 | -0.809379 | 1.948454e-50 | -8.615850e-47 |
| Msa0094600 | Msa0610590 | -0.802881 | 4.545117e-49 | -8.615850e-47 |
| Msa0094600 | Msa0651190 | -0.807665 | 4.524815e-50 | -8.615850e-47 |
| Msa0094600 | Msa0709390 | 0.834371 | 3.114969e-56 | -8.615850e-47 |
| Msa0094600 | Msa0711130 | -0.819287 | 1.257288e-52 | -8.615850e-47 |
| Msa0094600 | Msa0723870 | -0.827000 | 1.992132e-54 | -8.615850e-47 |
| Msa0094600 | Msa0740060 | -0.815838 | 7.530977e-52 | -8.615850e-47 |
| Msa0094600 | Msa0805420 | -0.811475 | 6.872829e-51 | -8.615850e-47 |
| Msa0094600 | Msa0876850 | 0.805644 | 1.208225e-49 | -8.615850e-47 |
| Msa0094600 | Msa0880030 | 0.824258 | 8.898251e-54 | -8.615850e-47 |
| Msa0094600 | Msa0888680 | -0.813223 | 2.854287e-51 | -8.615850e-47 |
| Msa0094600 | Msa0942080 | 0.809866 | 1.530967e-50 | -8.615850e-47 |
| Msa0094600 | Msa0982240 | -0.859924 | 2.952461e-63 | -8.615850e-47 |
| Msa0094600 | Msa1040520 | -0.809214 | 2.113991e-50 | -8.615850e-47 |
| Msa0094600 | Msa1041600 | 0.836913 | 7.081325e-57 | -8.615850e-47 |
| Msa0094600 | Msa1041840 | 0.845207 | 4.690688e-59 | -8.615850e-47 |
| Msa0094600 | Msa1068200 | 0.843253 | 1.569856e-58 | -8.615850e-47 |
| Msa0094600 | Msa1075080 | 0.827647 | 1.393737e-54 | -8.615850e-47 |
| Msa0094600 | Msa1075220 | 0.841756 | 3.918712e-58 | -8.615850e-47 |
| Msa0094600 | Msa1079430 | -0.804643 | 1.957524e-49 | -8.615850e-47 |
| Msa0094600 | Msa1080770 | -0.802260 | 6.103555e-49 | -8.615850e-47 |
| Msa0094600 | Msa1084260 | -0.812477 | 4.157100e-51 | -8.615850e-47 |
| Msa0094600 | Msa1116130 | 0.815779 | 7.760477e-52 | -8.615850e-47 |
| Msa0094600 | Msa1122370 | 0.856553 | 2.976644e-62 | -8.615850e-47 |
| Msa0094600 | Msa1124970 | 0.825070 | 5.726777e-54 | -8.615850e-47 |
| Msa0094600 | Msa1127770 | -0.825261 | 5.161730e-54 | -8.615850e-47 |
| Msa0094600 | Msa1131530 | -0.804987 | 1.659138e-49 | -8.615850e-47 |
| Msa0094600 | Msa1139000 | 0.833169 | 6.224656e-56 | -8.615850e-47 |
| Msa0094600 | Msa1152950 | -0.813969 | 1.955130e-51 | -8.615850e-47 |
| Msa0094600 | Msa1156340 | 0.831757 | 1.393134e-55 | -8.615850e-47 |
| Msa0094600 | Msa1162550 | 0.843518 | 1.334316e-58 | -8.615850e-47 |
| Msa0094600 | Msa1166500 | 0.841767 | 3.891811e-58 | -8.615850e-47 |
| Msa0094600 | Msa1167350 | 0.806961 | 6.380078e-50 | -8.615850e-47 |
| Msa0094600 | Msa1170800 | -0.837942 | 3.859228e-57 | -8.615850e-47 |
| Msa0094600 | Msa1188710 | -0.801711 | 7.914765e-49 | -8.615850e-47 |
| Msa0094600 | Msa1220150 | -0.804237 | 2.378341e-49 | -8.615850e-47 |
| Msa0094600 | Msa1227330 | -0.805957 | 1.038786e-49 | -8.615850e-47 |
| Msa0094600 | Msa1265070 | -0.812066 | 5.110074e-51 | -8.615850e-47 |
| Msa0094600 | Msa1359920 | -0.808391 | 3.169003e-50 | -8.615850e-47 |
| Msa0094600 | Msa1361770 | -0.858404 | 8.430881e-63 | -8.615850e-47 |
| Msa0094600 | Msa1370650 | -0.800691 | 1.279860e-48 | -8.615850e-47 |
| Msa0094600 | Msa1379590 | -0.805583 | 1.244799e-49 | -8.615850e-47 |
| Msa0094600 | Msa1379850 | -0.844960 | 5.470108e-59 | -8.615850e-47 |
| Msa0094600 | Msa1423040 | 0.818468 | 1.929517e-52 | -8.615850e-47 |
| Msa0094600 | Msa1424640 | -0.803979 | 2.691251e-49 | -8.615850e-47 |
| Msa0094600 | Msa1445030 | -0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0094600 | Msa1447150 | -0.853873 | 1.791952e-61 | -8.615850e-47 |
| Msa0094600 | Msa1451620 | 0.824278 | 8.801746e-54 | -8.615850e-47 |
| Msa0094600 | Msa1459050 | -0.834292 | 3.261086e-56 | -8.615850e-47 |
| Msa0094600 | Msa1461810 | 0.832993 | 6.881396e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094600 | MtrunA17_Chr4g0072361 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 3.98e-61 | 180 |
| Msa0094600 | MtrunA17_Chr4g0041421 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.29e-17 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094600 | AT4G30220.1 | 87.500 | 88 | 11 | 0 | 1 | 88 | 1 | 88 | 2.42e-53 | 161 |
| Msa0094600 | AT4G30220.2 | 85.227 | 88 | 13 | 0 | 1 | 88 | 9 | 96 | 4.80e-52 | 158 |
| Msa0094600 | AT2G14285.1 | 83.607 | 61 | 10 | 0 | 28 | 88 | 1 | 61 | 1.33e-32 | 108 |
| Msa0094600 | AT3G59810.3 | 44.928 | 69 | 38 | 0 | 8 | 76 | 15 | 83 | 1.37e-17 | 70.9 |
| Msa0094600 | AT3G59810.1 | 44.928 | 69 | 38 | 0 | 8 | 76 | 15 | 83 | 1.37e-17 | 70.9 |
| Msa0094600 | AT3G59810.2 | 44.928 | 69 | 38 | 0 | 8 | 76 | 15 | 83 | 1.37e-17 | 70.9 |
| Msa0094600 | AT2G43810.2 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.45e-17 | 70.9 |
| Msa0094600 | AT2G43810.3 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.45e-17 | 70.9 |
| Msa0094600 | AT2G43810.1 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.45e-17 | 70.9 |
Find 43 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTGAAGTGAAAATT+AGG | 0.213963 | 1_2:+77900482 | None:intergenic |
| AAATCTCATGTTTATACTAT+TGG | 0.240845 | 1_2:-77897996 | Msa0094600:three_prime_UTR |
| CATTTGAGTTTCACAATAAC+AGG | 0.298303 | 1_2:+77900192 | None:intergenic |
| CATATTGTAGTTGTTTCAAA+TGG | 0.322694 | 1_2:-77897965 | Msa0094600:three_prime_UTR |
| AATTATATGTCGTGATTCAC+TGG | 0.391189 | 1_2:-77898019 | Msa0094600:three_prime_UTR |
| CTGTTATTGTGAAACTCAAA+TGG | 0.394430 | 1_2:-77900191 | Msa0094600:CDS |
| TCAGCTTGAAGTGAAAATTA+GGG | 0.408305 | 1_2:+77900483 | None:intergenic |
| TGATTCCTACATGAACTTGC+AGG | 0.426591 | 1_2:-77899986 | Msa0094600:intron |
| TCTTCGATTTCTTCATCCTC+TGG | 0.426615 | 1_2:+77898211 | None:intergenic |
| CAATGATACCCTCAACAATC+GGG | 0.440318 | 1_2:-77898063 | Msa0094600:three_prime_UTR |
| GTCATTCATTGCTGACAGAA+TGG | 0.446366 | 1_2:+77897906 | None:intergenic |
| AATTAACTGATCCGCACAAT+TGG | 0.447308 | 1_2:-77897852 | Msa0094600:three_prime_UTR |
| TCAATGATACCCTCAACAAT+CGG | 0.450947 | 1_2:-77898064 | Msa0094600:three_prime_UTR |
| GTATCTTCACTTAGATGAGT+GGG | 0.462741 | 1_2:-77898122 | Msa0094600:three_prime_UTR |
| CAGTTAATTGTCCTGGTGAA+TGG | 0.464960 | 1_2:+77897866 | None:intergenic |
| TGTTATTGTGAAACTCAAAT+GGG | 0.470165 | 1_2:-77900190 | Msa0094600:CDS |
| TCATTCATTGCTGACAGAAT+GGG | 0.488259 | 1_2:+77897907 | None:intergenic |
| CTCAATGTACTCTTCAGTGT+TGG | 0.496731 | 1_2:+77899847 | None:intergenic |
| TGTATCTTCACTTAGATGAG+TGG | 0.502579 | 1_2:-77898123 | Msa0094600:three_prime_UTR |
| TGCGGATCAGTTAATTGTCC+TGG | 0.512892 | 1_2:+77897859 | None:intergenic |
| CGAAAACGAAGACGCTGAAA+CGG | 0.525888 | 1_2:+77900438 | None:intergenic |
| ATATTGTAGTTGTTTCAAAT+GGG | 0.529502 | 1_2:-77897964 | Msa0094600:three_prime_UTR |
| TGTGAAACTCAAATGGGGAA+TGG | 0.534967 | 1_2:-77900184 | Msa0094600:CDS |
| GAATGACATTAGACATGAGC+GGG | 0.548700 | 1_2:-77897890 | Msa0094600:three_prime_UTR |
| AAACGAAGACGCTGAAACGG+TGG | 0.556087 | 1_2:+77900441 | None:intergenic |
| GAAAATACAGCTCCTACCAT+AGG | 0.556330 | 1_2:-77897935 | Msa0094600:three_prime_UTR |
| CATGAGCGGGACCATTCACC+AGG | 0.557208 | 1_2:-77897877 | Msa0094600:three_prime_UTR |
| GACAGAATGGGAATTGCCTA+TGG | 0.576094 | 1_2:+77897919 | None:intergenic |
| AACACTGAAGAGTACATTGA+GGG | 0.587864 | 1_2:-77899845 | Msa0094600:CDS |
| TACTTACGGCCATTGTAGAA+CGG | 0.601154 | 1_2:+77900413 | None:intergenic |
| CACTTCAAGCTGAAACAGAG+AGG | 0.607207 | 1_2:-77900473 | Msa0094600:five_prime_UTR |
| CTACATGCGCGGAGTACCAG+AGG | 0.623589 | 1_2:-77898227 | Msa0094600:CDS |
| AATGATACCCTCAACAATCG+GGG | 0.628973 | 1_2:-77898062 | Msa0094600:three_prime_UTR |
| GAATGGGAATTGCCTATGGT+AGG | 0.629863 | 1_2:+77897923 | None:intergenic |
| TTGTACCTGCAAGTTCATGT+AGG | 0.632824 | 1_2:+77899981 | None:intergenic |
| AACAATGTTCTCTACATGCG+CGG | 0.654078 | 1_2:-77898238 | Msa0094600:CDS |
| TGTAGGAATCAACTGAAACA+AGG | 0.659877 | 1_2:+77899998 | None:intergenic |
| GTTATTGTGAAACTCAAATG+GGG | 0.661938 | 1_2:-77900189 | Msa0094600:CDS |
| AAATGGGGAATGGAGTACAA+AGG | 0.669721 | 1_2:-77900174 | Msa0094600:intron |
| CAACACTGAAGAGTACATTG+AGG | 0.691161 | 1_2:-77899846 | Msa0094600:CDS |
| ATGATACCCTCAACAATCGG+GGG | 0.700443 | 1_2:-77898061 | Msa0094600:three_prime_UTR |
| TATGATGGGAACCAATTGTG+CGG | 0.723853 | 1_2:+77897841 | None:intergenic |
| TGAATGACATTAGACATGAG+CGG | 0.734691 | 1_2:-77897891 | Msa0094600:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATATTTTTTATTAAA+AGG | - | chr1_2:77899858-77899877 | Msa0094600:intron | 0.0% |
| !! | ATTAGCAACATAATAATAAA+GGG | + | chr1_2:77898166-77898185 | None:intergenic | 15.0% |
| !! | AATTAGCAACATAATAATAA+AGG | + | chr1_2:77898167-77898186 | None:intergenic | 15.0% |
| !!! | CTAAATATTTTGATTATGAT+GGG | + | chr1_2:77900486-77900505 | None:intergenic | 15.0% |
| !!! | ACTAAATATTTTGATTATGA+TGG | + | chr1_2:77900487-77900506 | None:intergenic | 15.0% |
| !!! | AGTTTTGTTTATCTATCATT+TGG | - | chr1_2:77898646-77898665 | Msa0094600:intron | 20.0% |
| !!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr1_2:77898888-77898907 | Msa0094600:intron | 20.0% |
| !! | CATTCAATTAATTATGAATG+TGG | - | chr1_2:77898913-77898932 | Msa0094600:intron | 20.0% |
| !!! | AATTTGCTTATAATTGACAA+CGG | - | chr1_2:77898987-77899006 | Msa0094600:intron | 20.0% |
| !!! | ATATCTTTTAGTGATTATGT+GGG | + | chr1_2:77899211-77899230 | None:intergenic | 20.0% |
| !!! | AATCTTAATATTTTTAGTGC+AGG | - | chr1_2:77899785-77899804 | Msa0094600:intron | 20.0% |
| !! | ATTAAAAGGTCTGAATATAT+TGG | - | chr1_2:77899872-77899891 | Msa0094600:intron | 20.0% |
| !!! | TTTTATCTTCATGAAAAGTT+TGG | - | chr1_2:77899965-77899984 | Msa0094600:intron | 20.0% |
| !! | AGAAATAACACTATTAAAAG+AGG | + | chr1_2:77900005-77900024 | None:intergenic | 20.0% |
| !! | ATTCAATTGTTTGTATTTGT+AGG | - | chr1_2:77900046-77900065 | Msa0094600:intron | 20.0% |
| !! | AAATCTCATGTTTATACTAT+TGG | - | chr1_2:77900314-77900333 | Msa0094600:intron | 20.0% |
| !!! | ATATTGTAGTTGTTTCAAAT+GGG | - | chr1_2:77900346-77900365 | Msa0094600:intron | 20.0% |
| ! | AAAGTATAGAAGATTCTGAT+CGG | + | chr1_2:77897934-77897953 | None:intergenic | 25.0% |
| ! | AATCTTCTATACTTTCGATT+AGG | - | chr1_2:77897939-77897958 | Msa0094600:three_prime_UTR | 25.0% |
| ! | ACACAAATCATAGAGAAAAT+TGG | + | chr1_2:77897991-77898010 | None:intergenic | 25.0% |
| !!! | TTTTCTCTATGATTTGTGTA+TGG | - | chr1_2:77897992-77898011 | Msa0094600:three_prime_UTR | 25.0% |
| ! | AAATTGTTCAAAAAAGGCTT+GGG | + | chr1_2:77898088-77898107 | None:intergenic | 25.0% |
| ! | TAAATTGTTCAAAAAAGGCT+TGG | + | chr1_2:77898089-77898108 | None:intergenic | 25.0% |
| ! | CCAGTTAAATTGTTCAAAAA+AGG | + | chr1_2:77898094-77898113 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGAACAATTTAAC+TGG | - | chr1_2:77898091-77898110 | Msa0094600:three_prime_UTR | 25.0% |
| ! | TGTTATTGTGAAACTCAAAT+GGG | - | chr1_2:77898120-77898139 | Msa0094600:three_prime_UTR | 25.0% |
| !!! | TTGTGTTGTTTTTATTTTGC+AGG | - | chr1_2:77898286-77898305 | Msa0094600:intron | 25.0% |
| !!! | TCATCTATTTTATTTGCTAC+TGG | - | chr1_2:77898536-77898555 | Msa0094600:intron | 25.0% |
| !! | TTTTAAATTGATGTCGAAAC+TGG | - | chr1_2:77898617-77898636 | Msa0094600:intron | 25.0% |
| ! | TTTAAATTGATGTCGAAACT+GGG | - | chr1_2:77898618-77898637 | Msa0094600:intron | 25.0% |
| ! | ATCATATAGCATATATCTTC+TGG | + | chr1_2:77898704-77898723 | None:intergenic | 25.0% |
| ! | GCTAATATAAGCAAAAGAAT+TGG | + | chr1_2:77898809-77898828 | None:intergenic | 25.0% |
| !! | TTAGCTCTTCTAATATGATA+AGG | - | chr1_2:77899134-77899153 | Msa0094600:intron | 25.0% |
| !! | CATATCTTTTAGTGATTATG+TGG | + | chr1_2:77899212-77899231 | None:intergenic | 25.0% |
| ! | TAAGGTTTGTAAGATTGTTT+GGG | + | chr1_2:77899527-77899546 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAATCCAAAT+AGG | - | chr1_2:77899562-77899581 | Msa0094600:intron | 25.0% |
| ! | TCTAAGTGAAGATACAAAAA+CGG | + | chr1_2:77900183-77900202 | None:intergenic | 25.0% |
| !! | CATATTGTAGTTGTTTCAAA+TGG | - | chr1_2:77900345-77900364 | Msa0094600:intron | 25.0% |
| TCAGCTTGAAGTGAAAATTA+GGG | + | chr1_2:77897830-77897849 | None:intergenic | 30.0% | |
| TTCAGCTTGAAGTGAAAATT+AGG | + | chr1_2:77897831-77897850 | None:intergenic | 30.0% | |
| ! | CATTTGAGTTTCACAATAAC+AGG | + | chr1_2:77898121-77898140 | None:intergenic | 30.0% |
| CTGTTATTGTGAAACTCAAA+TGG | - | chr1_2:77898119-77898138 | Msa0094600:three_prime_UTR | 30.0% | |
| GTTATTGTGAAACTCAAATG+GGG | - | chr1_2:77898121-77898140 | Msa0094600:three_prime_UTR | 30.0% | |
| ACAATTCTAGATACACTAGT+TGG | - | chr1_2:77898348-77898367 | Msa0094600:intron | 30.0% | |
| CAAAGAAGTAGCAAAAAGAA+TGG | + | chr1_2:77898386-77898405 | None:intergenic | 30.0% | |
| !! | CATTCTTTTTGCTACTTCTT+TGG | - | chr1_2:77898384-77898403 | Msa0094600:intron | 30.0% |
| ! | TACATTGAGGGAAATTTTAC+TGG | - | chr1_2:77898477-77898496 | Msa0094600:intron | 30.0% |
| ! | ACATTGAGGGAAATTTTACT+GGG | - | chr1_2:77898478-77898497 | Msa0094600:intron | 30.0% |
| !! | ACTTAGGAGAGATTTTAATC+AGG | - | chr1_2:77898502-77898521 | Msa0094600:intron | 30.0% |
| TCAAATCAACAACAAACAAC+AGG | + | chr1_2:77898735-77898754 | None:intergenic | 30.0% | |
| ATTATAAACCAACTAGATCG+AGG | + | chr1_2:77898767-77898786 | None:intergenic | 30.0% | |
| TGCTTATAATTGACAACAGA+GGG | + | chr1_2:77898874-77898893 | None:intergenic | 30.0% | |
| TTGCTTATAATTGACAACAG+AGG | + | chr1_2:77898875-77898894 | None:intergenic | 30.0% | |
| TAACAATGTAGCACATTTGT+TGG | + | chr1_2:77899117-77899136 | None:intergenic | 30.0% | |
| ATGCTAATGGTATCATTAAC+GGG | + | chr1_2:77899246-77899265 | None:intergenic | 30.0% | |
| GATGCTAATGGTATCATTAA+CGG | + | chr1_2:77899247-77899266 | None:intergenic | 30.0% | |
| GTAAGGTTTGTAAGATTGTT+TGG | + | chr1_2:77899528-77899547 | None:intergenic | 30.0% | |
| TTATCCTTGCCTTGTATTTA+TGG | - | chr1_2:77899827-77899846 | Msa0094600:CDS | 30.0% | |
| TACAACACACCATAAATACA+AGG | + | chr1_2:77899839-77899858 | None:intergenic | 30.0% | |
| AATTATATGTCGTGATTCAC+TGG | - | chr1_2:77900291-77900310 | Msa0094600:intron | 30.0% | |
| TATAGAAGATTCTGATCGGA+GGG | + | chr1_2:77897930-77897949 | None:intergenic | 35.0% | |
| GAGAAAATTGGATCGCATTA+AGG | + | chr1_2:77897979-77897998 | None:intergenic | 35.0% | |
| AAAAAAGGCTTGGGATTAAC+AGG | + | chr1_2:77898079-77898098 | None:intergenic | 35.0% | |
| TGTAGGAATCAACTGAAACA+AGG | + | chr1_2:77898315-77898334 | None:intergenic | 35.0% | |
| GCAAAAAGAATGGTCAAAAC+CGG | + | chr1_2:77898376-77898395 | None:intergenic | 35.0% | |
| ! | AACACTGAAGAGTACATTGA+GGG | - | chr1_2:77898465-77898484 | Msa0094600:intron | 35.0% |
| ! | GGAAATTTTACTGGGAACTT+AGG | - | chr1_2:77898486-77898505 | Msa0094600:intron | 35.0% |
| ATGTTGAGAAATCATGTGCT+AGG | + | chr1_2:77898576-77898595 | None:intergenic | 35.0% | |
| TAGCACATGATTTCTCAACA+TGG | - | chr1_2:77898575-77898594 | Msa0094600:intron | 35.0% | |
| TTGCTTATAATTGACAACGG+AGG | - | chr1_2:77898990-77899009 | Msa0094600:intron | 35.0% | |
| TGCTTATAATTGACAACGGA+GGG | - | chr1_2:77898991-77899010 | Msa0094600:intron | 35.0% | |
| CAGCTGCTAAAACAATACAA+AGG | - | chr1_2:77899037-77899056 | Msa0094600:intron | 35.0% | |
| GGTATCATTAACGGGATATT+GGG | + | chr1_2:77899238-77899257 | None:intergenic | 35.0% | |
| TGGTATCATTAACGGGATAT+TGG | + | chr1_2:77899239-77899258 | None:intergenic | 35.0% | |
| AATGATGCATCAGATGCTAA+TGG | + | chr1_2:77899259-77899278 | None:intergenic | 35.0% | |
| TGTTTATCCAAACATGCACT+AGG | + | chr1_2:77899312-77899331 | None:intergenic | 35.0% | |
| TTCAATTGCTTTAACGGTGA+AGG | + | chr1_2:77899615-77899634 | None:intergenic | 35.0% | |
| TTCACCGTTAAAGCAATTGA+AGG | - | chr1_2:77899614-77899633 | Msa0094600:intron | 35.0% | |
| TCACCGTTAAAGCAATTGAA+GGG | - | chr1_2:77899615-77899634 | Msa0094600:intron | 35.0% | |
| ACGAAGACATAACTAGAAGT+GGG | + | chr1_2:77899652-77899671 | None:intergenic | 35.0% | |
| AACGAAGACATAACTAGAAG+TGG | + | chr1_2:77899653-77899672 | None:intergenic | 35.0% | |
| TAGTTATGTCTTCGTTAGCT+TGG | - | chr1_2:77899657-77899676 | Msa0094600:intron | 35.0% | |
| AACTCCCCAAATAAACATCA+AGG | - | chr1_2:77899708-77899727 | Msa0094600:intron | 35.0% | |
| ACTCCCCAAATAAACATCAA+GGG | - | chr1_2:77899709-77899728 | Msa0094600:intron | 35.0% | |
| ACACCCTTGATGTTTATTTG+GGG | + | chr1_2:77899715-77899734 | None:intergenic | 35.0% | |
| CACACCCTTGATGTTTATTT+GGG | + | chr1_2:77899716-77899735 | None:intergenic | 35.0% | |
| TCACACCCTTGATGTTTATT+TGG | + | chr1_2:77899717-77899736 | None:intergenic | 35.0% | |
| ! | AATAAACATCAAGGGTGTGA+TGG | - | chr1_2:77899717-77899736 | Msa0094600:intron | 35.0% |
| ATGGACAAAATGTCTGACTT+TGG | - | chr1_2:77899911-77899930 | Msa0094600:intron | 35.0% | |
| AAAATGTCTGACTTTGGCAT+TGG | - | chr1_2:77899917-77899936 | Msa0094600:intron | 35.0% | |
| ATTAAAAGAGGTCACACAGT+CGG | + | chr1_2:77899993-77900012 | None:intergenic | 35.0% | |
| TGTATCTTCACTTAGATGAG+TGG | - | chr1_2:77900187-77900206 | Msa0094600:CDS | 35.0% | |
| GTATCTTCACTTAGATGAGT+GGG | - | chr1_2:77900188-77900207 | Msa0094600:CDS | 35.0% | |
| TCAATGATACCCTCAACAAT+CGG | - | chr1_2:77900246-77900265 | Msa0094600:intron | 35.0% | |
| TCATTCATTGCTGACAGAAT+GGG | + | chr1_2:77900406-77900425 | None:intergenic | 35.0% | |
| TGAATGACATTAGACATGAG+CGG | - | chr1_2:77900419-77900438 | Msa0094600:intron | 35.0% | |
| AATTAACTGATCCGCACAAT+TGG | - | chr1_2:77900458-77900477 | Msa0094600:five_prime_UTR | 35.0% | |
| ! | GTTTTCGAACCGTTCTACAA+TGG | - | chr1_2:77897888-77897907 | Msa0094600:three_prime_UTR | 40.0% |
| TACTTACGGCCATTGTAGAA+CGG | + | chr1_2:77897900-77897919 | None:intergenic | 40.0% | |
| CGGAGGGAAAAAGATACTTA+CGG | + | chr1_2:77897914-77897933 | None:intergenic | 40.0% | |
| GTATAGAAGATTCTGATCGG+AGG | + | chr1_2:77897931-77897950 | None:intergenic | 40.0% | |
| TGTGAAACTCAAATGGGGAA+TGG | - | chr1_2:77898126-77898145 | Msa0094600:three_prime_UTR | 40.0% | |
| AAATGGGGAATGGAGTACAA+AGG | - | chr1_2:77898136-77898155 | Msa0094600:three_prime_UTR | 40.0% | |
| TGATTCCTACATGAACTTGC+AGG | - | chr1_2:77898324-77898343 | Msa0094600:intron | 40.0% | |
| TTGTACCTGCAAGTTCATGT+AGG | + | chr1_2:77898332-77898351 | None:intergenic | 40.0% | |
| CTCAATGTACTCTTCAGTGT+TGG | + | chr1_2:77898466-77898485 | None:intergenic | 40.0% | |
| ! | CAACACTGAAGAGTACATTG+AGG | - | chr1_2:77898464-77898483 | Msa0094600:intron | 40.0% |
| !! | AGGAAATGCTTCTGAAGCAA+TGG | - | chr1_2:77899154-77899173 | Msa0094600:intron | 40.0% |
| !! | GGAAATGCTTCTGAAGCAAT+GGG | - | chr1_2:77899155-77899174 | Msa0094600:intron | 40.0% |
| !!! | TGGGATCTTTTAGTTCCATC+TGG | + | chr1_2:77899192-77899211 | None:intergenic | 40.0% |
| ATAGCGCAGTCTCAATTTAC+AGG | + | chr1_2:77899288-77899307 | None:intergenic | 40.0% | |
| TGAGCTTATCTACTGACGTA+AGG | + | chr1_2:77899545-77899564 | None:intergenic | 40.0% | |
| TGGCCCTTCAATTGCTTTAA+CGG | + | chr1_2:77899621-77899640 | None:intergenic | 40.0% | |
| !!! | ACTAGAAGTGGGGTTTTGTT+TGG | + | chr1_2:77899641-77899660 | None:intergenic | 40.0% |
| CGAAGACATAACTAGAAGTG+GGG | + | chr1_2:77899651-77899670 | None:intergenic | 40.0% | |
| CACACCATAAATACAAGGCA+AGG | + | chr1_2:77899834-77899853 | None:intergenic | 40.0% | |
| !! | TGGTGTTGTATTTCTGAGCA+TGG | - | chr1_2:77899892-77899911 | Msa0094600:intron | 40.0% |
| AACAATGTTCTCTACATGCG+CGG | - | chr1_2:77900072-77900091 | Msa0094600:intron | 40.0% | |
| TCTTCGATTTCTTCATCCTC+TGG | + | chr1_2:77900102-77900121 | None:intergenic | 40.0% | |
| CAATGATACCCTCAACAATC+GGG | - | chr1_2:77900247-77900266 | Msa0094600:intron | 40.0% | |
| AATGATACCCTCAACAATCG+GGG | - | chr1_2:77900248-77900267 | Msa0094600:intron | 40.0% | |
| GAAAATACAGCTCCTACCAT+AGG | - | chr1_2:77900375-77900394 | Msa0094600:intron | 40.0% | |
| GTCATTCATTGCTGACAGAA+TGG | + | chr1_2:77900407-77900426 | None:intergenic | 40.0% | |
| GAATGACATTAGACATGAGC+GGG | - | chr1_2:77900420-77900439 | Msa0094600:exon | 40.0% | |
| CAGTTAATTGTCCTGGTGAA+TGG | + | chr1_2:77900447-77900466 | None:intergenic | 40.0% | |
| ! | TATGATGGGAACCAATTGTG+CGG | + | chr1_2:77900472-77900491 | None:intergenic | 40.0% |
| CACTTCAAGCTGAAACAGAG+AGG | - | chr1_2:77897837-77897856 | Msa0094600:three_prime_UTR | 45.0% | |
| CGAAAACGAAGACGCTGAAA+CGG | + | chr1_2:77897875-77897894 | None:intergenic | 45.0% | |
| ! | CTAGATACACTAGTTGGTGC+CGG | - | chr1_2:77898354-77898373 | Msa0094600:intron | 45.0% |
| TCTGTGAACTTCTCTGTAGC+TGG | - | chr1_2:77898440-77898459 | Msa0094600:intron | 45.0% | |
| TAAAGCGACCTCGATCTAGT+TGG | - | chr1_2:77898756-77898775 | Msa0094600:intron | 45.0% | |
| CTTGTTGGGGTAATACGACT+TGG | + | chr1_2:77899083-77899102 | None:intergenic | 45.0% | |
| TGGCTAAGCATGCTCTTGTT+GGG | + | chr1_2:77899097-77899116 | None:intergenic | 45.0% | |
| TTGGCTAAGCATGCTCTTGT+TGG | + | chr1_2:77899098-77899117 | None:intergenic | 45.0% | |
| ! | AGTTCCATCTGGTTTGAGCA+AGG | + | chr1_2:77899181-77899200 | None:intergenic | 45.0% |
| CGCTATACCTAGTGCATGTT+TGG | - | chr1_2:77899302-77899321 | Msa0094600:intron | 45.0% | |
| AGGAGAAAGCTCTCCTAGAA+GGG | + | chr1_2:77899595-77899614 | None:intergenic | 45.0% | |
| AAGGAGAAAGCTCTCCTAGA+AGG | + | chr1_2:77899596-77899615 | None:intergenic | 45.0% | |
| ATGATACCCTCAACAATCGG+GGG | - | chr1_2:77900249-77900268 | Msa0094600:intron | 45.0% | |
| GAATGGGAATTGCCTATGGT+AGG | + | chr1_2:77900390-77900409 | None:intergenic | 45.0% | |
| GACAGAATGGGAATTGCCTA+TGG | + | chr1_2:77900394-77900413 | None:intergenic | 45.0% | |
| TGCGGATCAGTTAATTGTCC+TGG | + | chr1_2:77900454-77900473 | None:intergenic | 45.0% | |
| AAACGAAGACGCTGAAACGG+TGG | + | chr1_2:77897872-77897891 | None:intergenic | 50.0% | |
| GGCTAAGCATGCTCTTGTTG+GGG | + | chr1_2:77899096-77899115 | None:intergenic | 50.0% | |
| GGAGAAAGCTCTCCTAGAAG+GGG | + | chr1_2:77899594-77899613 | None:intergenic | 50.0% | |
| CATAGACCCCCGATTGTTGA+GGG | + | chr1_2:77900258-77900277 | None:intergenic | 50.0% | |
| ACATAGACCCCCGATTGTTG+AGG | + | chr1_2:77900259-77900278 | None:intergenic | 50.0% | |
| TGGGCCTTGCTCAAACCAGA+TGG | - | chr1_2:77899174-77899193 | Msa0094600:intron | 55.0% | |
| AGAAGGGGCAGCGGCCTATT+TGG | + | chr1_2:77899579-77899598 | None:intergenic | 60.0% | |
| AATAGGCCGCTGCCCCTTCT+AGG | - | chr1_2:77899579-77899598 | Msa0094600:intron | 60.0% | |
| AGCTCTCCTAGAAGGGGCAG+CGG | + | chr1_2:77899588-77899607 | None:intergenic | 60.0% | |
| ! | CTACATGCGCGGAGTACCAG+AGG | - | chr1_2:77900083-77900102 | Msa0094600:intron | 60.0% |
| CATGAGCGGGACCATTCACC+AGG | - | chr1_2:77900433-77900452 | Msa0094600:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 77897821 | 77900511 | 77897821 | ID=Msa0094600;Name=Msa0094600 |
| chr1_2 | mRNA | 77897821 | 77900511 | 77897821 | ID=Msa0094600-mRNA-1;Parent=Msa0094600;Name=Msa0094600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=86|1|1|1|1|1|5|374|88 |
| chr1_2 | exon | 77897821 | 77898264 | 77897821 | ID=Msa0094600-mRNA-1:exon:27729;Parent=Msa0094600-mRNA-1 |
| chr1_2 | exon | 77899809 | 77899873 | 77899809 | ID=Msa0094600-mRNA-1:exon:27728;Parent=Msa0094600-mRNA-1 |
| chr1_2 | exon | 77899987 | 77900024 | 77899987 | ID=Msa0094600-mRNA-1:exon:27727;Parent=Msa0094600-mRNA-1 |
| chr1_2 | exon | 77900175 | 77900262 | 77900175 | ID=Msa0094600-mRNA-1:exon:27726;Parent=Msa0094600-mRNA-1 |
| chr1_2 | exon | 77900420 | 77900511 | 77900420 | ID=Msa0094600-mRNA-1:exon:27725;Parent=Msa0094600-mRNA-1 |
| chr1_2 | five_prime_UTR | 77900426 | 77900511 | 77900426 | ID=Msa0094600-mRNA-1:five_prime_utr;Parent=Msa0094600-mRNA-1 |
| chr1_2 | CDS | 77900420 | 77900425 | 77900420 | ID=Msa0094600-mRNA-1:cds;Parent=Msa0094600-mRNA-1 |
| chr1_2 | CDS | 77900175 | 77900262 | 77900175 | ID=Msa0094600-mRNA-1:cds;Parent=Msa0094600-mRNA-1 |
| chr1_2 | CDS | 77899987 | 77900024 | 77899987 | ID=Msa0094600-mRNA-1:cds;Parent=Msa0094600-mRNA-1 |
| chr1_2 | CDS | 77899809 | 77899873 | 77899809 | ID=Msa0094600-mRNA-1:cds;Parent=Msa0094600-mRNA-1 |
| chr1_2 | CDS | 77898195 | 77898264 | 77898195 | ID=Msa0094600-mRNA-1:cds;Parent=Msa0094600-mRNA-1 |
| chr1_2 | three_prime_UTR | 77897821 | 77898194 | 77897821 | ID=Msa0094600-mRNA-1:three_prime_utr;Parent=Msa0094600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
