AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1346080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346080 MtrunA17_Chr1g0149451 95.411 414 19 0 8 421 9 422 0.0 822
Msa1346080 MtrunA17_Chr3g0082141 31.229 301 175 6 52 325 141 436 1.34e-37 145
Msa1346080 MtrunA17_Chr1g0164561 33.333 219 120 4 132 325 7 224 2.58e-35 130
Msa1346080 MtrunA17_Chr5g0406251 26.689 296 193 10 35 325 275 551 1.06e-22 100
Msa1346080 MtrunA17_Chr4g0047211 29.293 198 132 3 133 329 116 306 2.24e-20 91.7
Msa1346080 MtrunA17_Chr4g0047191 29.293 198 132 3 133 329 121 311 2.28e-20 92.0
Msa1346080 MtrunA17_Chr5g0427651 25.497 302 203 8 33 327 623 909 2.34e-19 90.9
Msa1346080 MtrunA17_Chr4g0047201 28.283 198 134 3 133 329 277 467 1.26e-18 87.8
Msa1346080 MtrunA17_Chr2g0282321 29.293 198 132 3 133 329 238 428 6.10e-18 85.5
Msa1346080 MtrunA17_Chr3g0132791 25.733 307 203 9 33 329 630 921 1.32e-17 85.5
Msa1346080 MtrunA17_Chr1g0211611 24.917 301 200 11 39 333 285 565 1.38e-17 85.1
Msa1346080 MtrunA17_Chr3g0117811 21.802 344 225 9 1 319 11 335 2.17e-16 80.1
Msa1346080 MtrunA17_Chr3g0133541 26.642 274 179 8 60 324 313 573 3.08e-16 80.9
Msa1346080 MtrunA17_Chr8g0392871 25.180 278 183 9 47 319 735 992 1.39e-14 76.3
Msa1346080 MtrunA17_Chr2g0286501 35.766 137 83 4 144 277 126 260 1.62e-14 75.9
Msa1346080 MtrunA17_Chr4g0025041 28.931 159 100 5 160 316 98 245 1.63e-14 74.7
Msa1346080 MtrunA17_Chr1g0205071 23.810 189 137 3 133 320 173 355 3.19e-14 73.9
Msa1346080 MtrunA17_Chr5g0394681 26.087 184 129 3 133 315 181 358 3.55e-14 73.6
Msa1346080 MtrunA17_Chr6g0482711 31.056 161 103 4 161 319 759 913 8.39e-14 73.6
Msa1346080 MtrunA17_Chr4g0075541 25.397 189 133 3 133 320 162 343 1.92e-13 71.6
Msa1346080 MtrunA17_Chr3g0143531 23.162 272 174 5 54 315 25 271 1.96e-13 70.5
Msa1346080 MtrunA17_Chr7g0258051 23.308 266 190 6 52 316 14 266 2.01e-13 72.0
Msa1346080 MtrunA17_Chr4g0038501 24.242 297 196 10 60 348 26 301 2.42e-13 72.4
Msa1346080 MtrunA17_Chr1g0179331 28.322 286 176 11 45 322 549 813 2.56e-13 72.0
Msa1346080 MtrunA17_Chr5g0397931 28.977 176 109 5 161 326 522 691 2.97e-13 71.6
Msa1346080 MtrunA17_Chr1g0191171 24.841 314 197 10 24 319 650 942 4.84e-13 71.2
Msa1346080 MtrunA17_Chr2g0294351 25.249 301 197 10 52 344 464 744 8.48e-13 70.5
Msa1346080 MtrunA17_Chr8g0386981 25.763 295 184 11 33 316 390 660 2.87e-12 68.9
Msa1346080 MtrunA17_Chr2g0299991 26.000 200 129 7 129 316 138 330 1.75e-11 65.5
Msa1346080 MtrunA17_Chr2g0288841 27.941 272 147 13 60 315 11 249 3.72e-11 64.7
Msa1346080 MtrunA17_Chr7g0244621 24.747 198 138 4 132 322 117 310 5.94e-11 63.5
Msa1346080 MtrunA17_Chr2g0280701 27.650 217 133 8 52 260 499 699 6.42e-11 64.3
Msa1346080 MtrunA17_Chr2g0325851 28.667 150 97 4 166 315 663 802 9.77e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346080 AT4G32250.3 63.591 401 135 4 24 421 14 406 0.0 518
Msa1346080 AT4G32250.2 63.591 401 135 4 24 421 14 406 0.0 518
Msa1346080 AT4G32250.1 63.591 401 135 4 24 421 14 406 0.0 518
Msa1346080 AT5G13530.1 31.894 301 172 9 54 325 137 433 9.32e-38 146
Msa1346080 AT5G13530.2 31.894 301 172 9 54 325 137 433 9.50e-38 146
Msa1346080 AT4G24480.1 26.866 335 204 10 22 330 624 943 4.50e-20 93.6
Msa1346080 AT4G24480.2 26.888 331 204 10 22 330 624 938 3.83e-19 90.5
Msa1346080 AT4G24480.3 26.888 331 204 10 22 330 624 938 4.26e-19 90.5
Msa1346080 AT4G35780.1 23.779 307 208 11 29 328 264 551 1.80e-18 88.2
Msa1346080 AT4G38470.2 24.759 311 210 10 22 327 257 548 1.92e-18 87.8
Msa1346080 AT2G17700.1 23.795 332 222 13 6 325 230 542 2.29e-18 87.8
Msa1346080 AT4G38470.1 25.484 310 203 11 22 326 257 543 3.95e-18 87.0
Msa1346080 AT1G05100.1 32.044 181 106 7 141 315 89 258 1.13e-16 81.3
Msa1346080 AT3G63260.1 25.521 192 135 3 130 319 178 363 5.62e-16 79.7
Msa1346080 AT3G01490.1 22.772 303 212 6 33 319 87 383 1.14e-15 79.0
Msa1346080 AT4G26890.1 28.108 185 119 4 134 316 77 249 4.32e-15 77.4
Msa1346080 AT4G38470.3 25.856 263 171 10 22 279 257 500 1.14e-14 76.3
Msa1346080 AT5G01850.1 27.363 201 131 5 132 325 90 282 1.23e-14 75.1
Msa1346080 AT5G01850.2 27.861 201 130 5 132 325 114 306 1.54e-14 75.1
Msa1346080 AT3G46930.1 26.131 199 138 4 133 329 240 431 1.56e-14 75.9
Msa1346080 AT3G46930.2 26.131 199 138 4 133 329 275 466 1.77e-14 75.5
Msa1346080 AT1G08720.1 26.761 284 182 9 47 325 665 927 1.79e-14 76.3
Msa1346080 AT5G11850.1 24.818 274 184 7 52 320 607 863 5.54e-14 74.7
Msa1346080 AT1G62400.1 25.253 198 139 4 133 329 161 350 8.77e-14 72.8
Msa1346080 AT1G73660.1 24.088 274 186 7 52 320 746 1002 1.69e-13 73.2
Msa1346080 AT1G32320.1 26.493 268 163 11 60 316 54 298 2.53e-13 70.9
Msa1346080 AT5G58950.1 25.126 199 141 3 133 330 284 475 3.29e-13 71.6
Msa1346080 AT2G42640.4 28.571 182 118 6 138 319 567 736 4.74e-13 71.6
Msa1346080 AT3G45790.1 28.326 233 145 6 42 264 90 310 5.69e-13 70.5
Msa1346080 AT2G42640.1 28.571 182 118 6 138 319 605 774 6.28e-13 71.2
Msa1346080 AT1G18160.1 24.088 274 186 7 52 320 713 969 7.10e-13 71.2
Msa1346080 AT5G18700.1 33.824 136 84 3 143 276 79 210 1.01e-12 70.9
Msa1346080 AT5G03730.2 26.071 280 180 11 47 319 547 806 1.05e-12 70.5
Msa1346080 AT5G03730.1 26.071 280 180 11 47 319 547 806 1.05e-12 70.5
Msa1346080 AT3G46140.1 27.897 233 146 6 42 264 90 310 3.64e-12 67.8
Msa1346080 AT4G23050.1 29.299 157 103 4 161 315 566 716 4.62e-12 68.6
Msa1346080 AT4G23050.2 29.299 157 103 4 161 315 567 717 4.70e-12 68.6
Msa1346080 AT4G29810.3 27.363 201 125 8 129 318 147 337 5.82e-12 67.0
Msa1346080 AT4G29810.1 27.136 199 124 8 129 316 138 326 1.66e-11 65.9
Msa1346080 AT4G29810.2 27.136 199 124 8 129 316 147 335 1.91e-11 65.9
Msa1346080 AT1G08720.2 25.670 261 169 8 47 302 665 905 2.40e-11 66.2

Find 150 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGAGTTGGGAGGCTTTC+TGG 0.085084 tig0008142:-14852 Msa1346080:intergenic
AAACTCTCCTTTCTTAAAAT+TGG 0.109577 tig0008142:+11548 Msa1346080:five_prime_UTR
TGACAACGATCAAGCGATTT+TGG 0.146585 tig0008142:+13618 Msa1346080:CDS
GGTTGAGTGTTAAGTTTATT+TGG 0.163491 tig0008142:+12483 Msa1346080:five_prime_UTR
GAAGAACATTACATGGTTTA+AGG 0.171246 tig0008142:-13591 Msa1346080:intergenic
ACCTCTGGTTTCCATTGTTC+TGG 0.192206 tig0008142:-13730 Msa1346080:intergenic
CATGGAATTTCAATGTTAAA+TGG 0.209362 tig0008142:+13218 Msa1346080:CDS
TAAGTCAATGAAGATGTATT+TGG 0.232759 tig0008142:+12640 Msa1346080:five_prime_UTR
GTTGAGTGTTAAGTTTATTT+GGG 0.240390 tig0008142:+12484 Msa1346080:five_prime_UTR
TGTTCTGGAGCCATGTAATT+AGG 0.250797 tig0008142:-13715 Msa1346080:intergenic
TAAAGAAACAACCTTTGTTT+TGG 0.297214 tig0008142:-11613 Msa1346080:intergenic
TGCTGAAGTTTCAAAGGTTC+AGG 0.298858 tig0008142:-13002 Msa1346080:intergenic
GGTGTTTATTTAGGCATTAA+AGG 0.300816 tig0008142:+12020 Msa1346080:five_prime_UTR
TTAGAACGTACTGCAGATTA+TGG 0.302417 tig0008142:+14900 Msa1346080:CDS
TCTAGACATTCCTGAATCTA+AGG 0.302873 tig0008142:-12865 Msa1346080:intergenic
ATATTCTGCGCGTCTTTAAA+AGG 0.310548 tig0008142:+13980 Msa1346080:CDS
GTCGATGTATGAATTCTTAT+AGG 0.311891 tig0008142:-14974 Msa1346080:intergenic
TAGTCAGTGCTGCCTGATTT+TGG 0.315215 tig0008142:-14776 Msa1346080:intergenic
GTATCTGTTGACTTTCTTGT+TGG 0.318605 tig0008142:+11903 Msa1346080:five_prime_UTR
TTCACATGATCCTCTTTGAT+TGG 0.322968 tig0008142:-13128 Msa1346080:intergenic
TTTACTTGATATCACTTCAT+AGG 0.337285 tig0008142:+12435 Msa1346080:five_prime_UTR
AGTATTACAACCTTAGATTC+AGG 0.360396 tig0008142:+12855 Msa1346080:CDS
GAGGACCCTTTGGTGATGTT+TGG 0.361104 tig0008142:+13036 Msa1346080:CDS
TTCTAGAGCTTCACGCTAAA+GGG 0.362481 tig0008142:+13554 Msa1346080:CDS
TACTGGGATGGGTGACCTCC+TGG 0.365679 tig0008142:+12231 Msa1346080:five_prime_UTR
TGTTTGGCCGAGAGTAATAC+TGG 0.367334 tig0008142:+12214 Msa1346080:five_prime_UTR
AAGGAGTTTCTAGTGTTTGC+TGG 0.368878 tig0008142:+13192 Msa1346080:CDS
ATCATATAGGATTTGAGTTC+AGG 0.372845 tig0008142:+12048 Msa1346080:five_prime_UTR
ACATCTTAGCAGCAACTTCA+TGG 0.384443 tig0008142:-13100 Msa1346080:intergenic
TTGAAACTTCAGCACCGAAT+TGG 0.395091 tig0008142:+13011 Msa1346080:CDS
GAAACGGATTCATGGGGATT+CGG 0.395952 tig0008142:+13772 Msa1346080:CDS
CCTCTCAAAGGATCAACTTC+AGG 0.398972 tig0008142:+14794 Msa1346080:CDS
TCGATGTATGAATTCTTATA+GGG 0.403661 tig0008142:-14973 Msa1346080:intergenic
CGAATTGGTCGAGGACCCTT+TGG 0.406343 tig0008142:+13026 Msa1346080:CDS
GAACAATCGAAATGGAATCT+TGG 0.408065 tig0008142:-11591 Msa1346080:intergenic
TGAAGAGCCAAGCAAAAGAT+TGG 0.413672 tig0008142:-13656 Msa1346080:intergenic
AATCTGCAGTTAAGCGTGTT+TGG 0.415346 tig0008142:+12198 Msa1346080:five_prime_UTR
ATGAAAGTAATTCCAAAATC+AGG 0.416519 tig0008142:+14747 Msa1346080:CDS
AATCCATGGACTTGCGCGAT+TGG 0.432685 tig0008142:-12976 Msa1346080:intergenic
TGTCATTTGAAACGGATTCA+TGG 0.434134 tig0008142:+13764 Msa1346080:CDS
GGAGGAGGATGGAGATATCA+AGG 0.438936 tig0008142:+14720 Msa1346080:CDS
TCTGTTGACTTTCTTGTTGG+TGG 0.439907 tig0008142:+11906 Msa1346080:five_prime_UTR
GTGTTTATTTAGGCATTAAA+GGG 0.442276 tig0008142:+12021 Msa1346080:five_prime_UTR
TGTCCTGTTGGTGAAATATA+CGG 0.443667 tig0008142:+13841 Msa1346080:CDS
GTCATTTGAAACGGATTCAT+GGG 0.449610 tig0008142:+13765 Msa1346080:CDS
ATTCTAGAGCTTCACGCTAA+AGG 0.452406 tig0008142:+13553 Msa1346080:CDS
TTTGAGGAATCGACCTTCAA+TGG 0.455368 tig0008142:+13954 Msa1346080:CDS
TCTAGTGTTTGCTGGTTACA+TGG 0.459137 tig0008142:+13200 Msa1346080:CDS
TCTCCCATTGAGAATATCCT+TGG 0.462519 tig0008142:+13913 Msa1346080:CDS
CAAAGGGTCCTCGACCAATT+CGG 0.467685 tig0008142:-13025 Msa1346080:intergenic
ATTAAAGGGTAGCATCATAT+AGG 0.475210 tig0008142:+12035 Msa1346080:five_prime_UTR
AGTGTTAAGTTTATTTGGGG+TGG 0.477588 tig0008142:+12488 Msa1346080:five_prime_UTR
GACATAGGGCCTCTGACCTC+TGG 0.481700 tig0008142:-13745 Msa1346080:intergenic
GTCTTTCGGGATTGTAAACA+TGG 0.483744 tig0008142:+12338 Msa1346080:five_prime_UTR
AAAGGTTCAGGTTCAATCCA+TGG 0.486677 tig0008142:-12990 Msa1346080:intergenic
AGTTGGGAGGCTTTCTGGAT+CGG 0.491406 tig0008142:-14847 Msa1346080:intergenic
AAGCCAACGACAGTTCCGTC+TGG 0.492923 tig0008142:-14896 Msa1346080:intergenic
AGGCCCTATGTCATTTGAAA+CGG 0.494592 tig0008142:+13756 Msa1346080:CDS
GAAGAGCCAAGCAAAAGATT+GGG 0.495194 tig0008142:-13655 Msa1346080:intergenic
AAATTGTATGACGGTTCAAT+TGG 0.497991 tig0008142:+13355 Msa1346080:CDS
CTGAATGAACTGGCTAATGA+TGG 0.498348 tig0008142:+14699 Msa1346080:CDS
CGACCAATCGCGCAAGTCCA+TGG 0.502376 tig0008142:+12973 Msa1346080:CDS
GATCCGTATATTTCACCAAC+AGG 0.502608 tig0008142:-13844 Msa1346080:intergenic
ACGTTATTAACATTGAGCTT+AGG 0.503963 tig0008142:-12785 Msa1346080:intergenic
ATGGGAGAAGGAAGGCCACT+TGG 0.504464 tig0008142:-13898 Msa1346080:intergenic
TGCACCAAGGATATTCTCAA+TGG 0.506987 tig0008142:-13917 Msa1346080:intergenic
CGCAGAATATCTACCATTGA+AGG 0.507993 tig0008142:-13967 Msa1346080:intergenic
GAATTTCAATGTTAAATGGA+AGG 0.512178 tig0008142:+13222 Msa1346080:CDS
TTTCTTGTTGGTGGTTGATG+AGG 0.512270 tig0008142:+11915 Msa1346080:five_prime_UTR
TGGCAGGTACGGGATCGATC+TGG 0.512572 tig0008142:+13522 Msa1346080:intron
CTCAAAGGATCAACTTCAGG+TGG 0.513886 tig0008142:+14797 Msa1346080:CDS
TTATGGATTTGTTCTAGTGA+GGG 0.514209 tig0008142:+14917 Msa1346080:CDS
TCAGATATTGCTCAGAGGCT+TGG 0.514336 tig0008142:+13688 Msa1346080:CDS
TTGATGAGGGAACAAGTGAT+TGG 0.514638 tig0008142:+11929 Msa1346080:five_prime_UTR
CAGAAAATTTCAAAGATCAC+AGG 0.514716 tig0008142:-12820 Msa1346080:intergenic
ATTGTAAACATGGGTATCAA+TGG 0.516132 tig0008142:+12348 Msa1346080:five_prime_UTR
ACACATCACCTCAAAACATC+AGG 0.516904 tig0008142:-13418 Msa1346080:intergenic
CATGGACTTGCGCGATTGGT+CGG 0.519277 tig0008142:-12972 Msa1346080:intergenic
ATGGTTTAAGGTTGAGAACA+AGG 0.524109 tig0008142:-13579 Msa1346080:intergenic
AATTTCAATGTTAAATGGAA+GGG 0.525630 tig0008142:+13223 Msa1346080:CDS
TTGCAGGTCACTGAATGAAC+TGG 0.528545 tig0008142:+14689 Msa1346080:intron
CGCTTAACTGCAGATTCTGA+TGG 0.530436 tig0008142:-12191 Msa1346080:intergenic
TTTCGATTGTTCCAAAACAA+AGG 0.530834 tig0008142:+11602 Msa1346080:five_prime_UTR
AGCAAACACTAGAAACTCCT+TGG 0.533146 tig0008142:-13190 Msa1346080:intergenic
CACCGAGTGGTTCCTCTCAA+AGG 0.541938 tig0008142:+14782 Msa1346080:CDS
CCTTGGTATGGATGTCCTGT+TGG 0.543914 tig0008142:+13829 Msa1346080:CDS
ATTATGGATTTGTTCTAGTG+AGG 0.545782 tig0008142:+14916 Msa1346080:CDS
ATTCGGTGCTGAAGTTTCAA+AGG 0.549441 tig0008142:-13008 Msa1346080:intergenic
TTCTTGTTGGTGGTTGATGA+GGG 0.549496 tig0008142:+11916 Msa1346080:five_prime_UTR
GGCCGAGAGTAATACTGGGA+TGG 0.549570 tig0008142:+12219 Msa1346080:five_prime_UTR
GAATCCGTTTCAAATGACAT+AGG 0.550959 tig0008142:-13760 Msa1346080:intergenic
TCATTGAGAAGAACATTACA+TGG 0.551201 tig0008142:-13598 Msa1346080:intergenic
GCCGAGAGTAATACTGGGAT+GGG 0.551397 tig0008142:+12220 Msa1346080:five_prime_UTR
GCACCAAGGATATTCTCAAT+GGG 0.552742 tig0008142:-13916 Msa1346080:intergenic
TCTTGGAGAAACAAAGAACT+AGG 0.554643 tig0008142:-11574 Msa1346080:intergenic
ACTGGTAGTCAACCTTGGTA+TGG 0.562801 tig0008142:+13817 Msa1346080:CDS
TGAGATTTGCATGAGTTGGG+AGG 0.563242 tig0008142:-14860 Msa1346080:intergenic
TTGAGTGTTAAGTTTATTTG+GGG 0.563417 tig0008142:+12485 Msa1346080:five_prime_UTR
AGCCAACGACAGTTCCGTCT+GGG 0.566135 tig0008142:-14895 Msa1346080:intergenic
ACTGGGATGGGTGACCTCCT+GGG 0.566628 tig0008142:+12232 Msa1346080:five_prime_UTR
AGGAATGTCTAGAGAAGTCA+TGG 0.568023 tig0008142:+12875 Msa1346080:CDS
GTGCAACACAAGGACTTCCC+AGG 0.568792 tig0008142:-12249 Msa1346080:intergenic
GTATTTACATATTTATTCCG+AGG 0.570546 tig0008142:+12553 Msa1346080:five_prime_UTR
TGGCTAATGATGGAGGAGGA+TGG 0.574319 tig0008142:+14709 Msa1346080:CDS
ATTACATGGCTCCAGAACAA+TGG 0.575533 tig0008142:+13719 Msa1346080:CDS
TCAACTTCAGGTGGGTGACA+TGG 0.577067 tig0008142:+14806 Msa1346080:CDS
GTATTTGTTACTTCTTAGAG+TGG 0.581235 tig0008142:+12106 Msa1346080:five_prime_UTR
TGCAAGCCAAACATCACCAA+AGG 0.581260 tig0008142:-13042 Msa1346080:intergenic
AGGATATTCTCAATGGGAGA+AGG 0.581766 tig0008142:-13910 Msa1346080:intergenic
TTTGTTCTAGTGAGGGTCCA+CGG 0.582005 tig0008142:+14924 Msa1346080:CDS
ACCCATCCCAGTATTACTCT+CGG 0.582388 tig0008142:-12221 Msa1346080:intergenic
TGGGAGAAGGAAGGCCACTT+GGG 0.586231 tig0008142:-13897 Msa1346080:intergenic
CGGTTCAATTGGTGACAAGT+TGG 0.586939 tig0008142:+13366 Msa1346080:CDS
AATCCGTTTCAAATGACATA+GGG 0.587008 tig0008142:-13759 Msa1346080:intergenic
TTGTTGTTGCTCAGACAACA+AGG 0.587800 tig0008142:+12664 Msa1346080:five_prime_UTR
TACGGGATCGATCTGGCTCA+AGG 0.590380 tig0008142:+13529 Msa1346080:CDS
TGGCTAGACTAAGAGATGGA+TGG 0.594983 tig0008142:+13386 Msa1346080:CDS
GATGTTACATCCAATCAAAG+AGG 0.595757 tig0008142:+13118 Msa1346080:CDS
GCAAGCCAAACATCACCAAA+GGG 0.597883 tig0008142:-13041 Msa1346080:intergenic
GAATTATGCTTGAAGTGCCA+AGG 0.602260 tig0008142:+13173 Msa1346080:CDS
CTTCAGCACCGAATTGGTCG+AGG 0.602330 tig0008142:+13017 Msa1346080:CDS
GCTTGGAAGTCCTAATTACA+TGG 0.604254 tig0008142:+13705 Msa1346080:CDS
ATCATTATGAAATTGTATGA+CGG 0.604681 tig0008142:+13346 Msa1346080:CDS
TGTTGACTGGTAGTCAACCT+TGG 0.606529 tig0008142:+13812 Msa1346080:CDS
ACCGTTGTTGAAATGTTGAC+TGG 0.606786 tig0008142:+13799 Msa1346080:CDS
CCTGAAGTTGATCCTTTGAG+AGG 0.610469 tig0008142:-14811 Msa1346080:intergenic
GTCCCAGACGGAACTGTCGT+TGG 0.613432 tig0008142:+14876 Msa1346080:CDS
TCATTTGAAACGGATTCATG+GGG 0.622874 tig0008142:+13766 Msa1346080:CDS
AAGTTGGCTAGACTAAGAGA+TGG 0.628842 tig0008142:+13382 Msa1346080:CDS
ATCCTTTGAGAGGAACCACT+CGG 0.632608 tig0008142:-14801 Msa1346080:intergenic
TATTCTCAATGGGAGAAGGA+AGG 0.642358 tig0008142:-13906 Msa1346080:intergenic
CAATGGAAACCAGAGGTCAG+AGG 0.644185 tig0008142:+13736 Msa1346080:CDS
GAGGGATGAAGTGCAACACA+AGG 0.648511 tig0008142:-12259 Msa1346080:intergenic
TCAAAGGATCAACTTCAGGT+GGG 0.652726 tig0008142:+14798 Msa1346080:CDS
GAAAAGCTGCATATCCCAAG+TGG 0.662621 tig0008142:+13883 Msa1346080:CDS
ACCAGTCAACATTTCAACAA+CGG 0.664981 tig0008142:-13800 Msa1346080:intergenic
GTTTGGCCGAGAGTAATACT+GGG 0.677161 tig0008142:+12215 Msa1346080:five_prime_UTR
TCTTTCGGGATTGTAAACAT+GGG 0.678318 tig0008142:+12339 Msa1346080:five_prime_UTR
AATGAACTGGCTAATGATGG+AGG 0.681313 tig0008142:+14702 Msa1346080:CDS
CAAAACATGAATGTCCCAGA+CGG 0.682309 tig0008142:+14864 Msa1346080:CDS
GTAAACATGGGTATCAATGG+CGG 0.686930 tig0008142:+12351 Msa1346080:five_prime_UTR
TTAGCTCAGATATTGCTCAG+AGG 0.694542 tig0008142:+13683 Msa1346080:CDS
GAACTGGCTAATGATGGAGG+AGG 0.699870 tig0008142:+14705 Msa1346080:CDS
TCCAGAACAATGGAAACCAG+AGG 0.702393 tig0008142:+13729 Msa1346080:CDS
CATACTCAAAACATGCACCA+AGG 0.704149 tig0008142:-13930 Msa1346080:intergenic
TTATAGGGTCATGAATACCG+TGG 0.720576 tig0008142:-14958 Msa1346080:intergenic
CCAACAGGACATCCATACCA+AGG 0.725485 tig0008142:-13829 Msa1346080:intergenic
GATAGTGTAGAAACATCACA+TGG 0.731382 tig0008142:-12291 Msa1346080:intergenic
CAACACAAGGACTTCCCAGG+AGG 0.733345 tig0008142:-12246 Msa1346080:intergenic
GCAGCACTGACTACACCGAG+TGG 0.764598 tig0008142:+14769 Msa1346080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTCTTTTTTTGA+GGG + tig0008142:11998-12017 Msa1346080:five_prime_UTR 10.0%
!! AAAAATACATAATAAAGAAA+AGG - tig0008142:12715-12734 Msa1346080:intergenic 10.0%
!! ATAAATAGATATTAACTAAA+AGG - tig0008142:14606-14625 Msa1346080:intergenic 10.0%
!! TTCAAAATAATGAAAAACAT+TGG - tig0008142:11751-11770 Msa1346080:intergenic 15.0%
!!! CTTAAAAAATTCTTTTTTTG+AGG + tig0008142:11997-12016 Msa1346080:five_prime_UTR 15.0%
!!! TAAAAAATTCTTTTTTTGAG+GGG + tig0008142:11999-12018 Msa1346080:five_prime_UTR 15.0%
!!! ACTATCTTTTTATTTAAAGA+AGG + tig0008142:12308-12327 Msa1346080:five_prime_UTR 15.0%
!!! CTATCTTTTTATTTAAAGAA+GGG + tig0008142:12309-12328 Msa1346080:five_prime_UTR 15.0%
!!! TATCTTTTTATTTAAAGAAG+GGG + tig0008142:12310-12329 Msa1346080:five_prime_UTR 15.0%
!! AAAAAATAAAATGCAAACAA+AGG - tig0008142:12378-12397 Msa1346080:intergenic 15.0%
!!! TTCTTTATTATGTATTTTTG+TGG + tig0008142:12716-12735 Msa1346080:five_prime_UTR 15.0%
!! ACATGTTAAGAATTTAAAAA+TGG + tig0008142:14449-14468 Msa1346080:intron 15.0%
!! TCTTTGATAAAAATGAATGA+TGG + tig0008142:11960-11979 Msa1346080:five_prime_UTR 20.0%
!! CTTTGATAAAAATGAATGAT+GGG + tig0008142:11961-11980 Msa1346080:five_prime_UTR 20.0%
!!! ATCTTTTTATTTAAAGAAGG+GGG + tig0008142:12311-12330 Msa1346080:five_prime_UTR 20.0%
!!! TTCTTTTGATTATGAGATTT+TGG + tig0008142:12914-12933 Msa1346080:CDS 20.0%
!! AATTTCAATGTTAAATGGAA+GGG + tig0008142:13223-13242 Msa1346080:CDS 20.0%
!! ATCATTATGAAATTGTATGA+CGG + tig0008142:13346-13365 Msa1346080:CDS 20.0%
!!! ATCTTTAACTTATATAGCAT+AGG + tig0008142:13459-13478 Msa1346080:intron 20.0%
!!! TCTTTAACTTATATAGCATA+GGG + tig0008142:13460-13479 Msa1346080:intron 20.0%
!! ATGCTAAATTAAACAAGAAT+CGG - tig0008142:14054-14073 Msa1346080:intergenic 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG - tig0008142:14543-14562 Msa1346080:intergenic 20.0%
!!! CAACAAAATATTTCTATCTT+TGG + tig0008142:14541-14560 Msa1346080:intron 20.0%
! AAACTCTCCTTTCTTAAAAT+TGG + tig0008142:11548-11567 Msa1346080:five_prime_UTR 25.0%
!!! TAGGAATCCAATTTTAAGAA+AGG - tig0008142:11558-11577 Msa1346080:intergenic 25.0%
!!! TAAAGAAACAACCTTTGTTT+TGG - tig0008142:11616-11635 Msa1346080:intergenic 25.0%
!!! ATTTTTTAAGCAATTGAGAG+AGG - tig0008142:11987-12006 Msa1346080:intergenic 25.0%
! GTGTTTATTTAGGCATTAAA+GGG + tig0008142:12021-12040 Msa1346080:five_prime_UTR 25.0%
! TTTACTTGATATCACTTCAT+AGG + tig0008142:12435-12454 Msa1346080:five_prime_UTR 25.0%
!!! GCTATTGTAGTTTTGATATA+TGG + tig0008142:12462-12481 Msa1346080:five_prime_UTR 25.0%
! GTTGAGTGTTAAGTTTATTT+GGG + tig0008142:12484-12503 Msa1346080:five_prime_UTR 25.0%
! TTGAGTGTTAAGTTTATTTG+GGG + tig0008142:12485-12504 Msa1346080:five_prime_UTR 25.0%
! GTATTTACATATTTATTCCG+AGG + tig0008142:12553-12572 Msa1346080:five_prime_UTR 25.0%
!! ATATAACATTTTTCTTGCCT+CGG - tig0008142:12573-12592 Msa1346080:intergenic 25.0%
! TAAGTCAATGAAGATGTATT+TGG + tig0008142:12640-12659 Msa1346080:five_prime_UTR 25.0%
! CATGGAATTTCAATGTTAAA+TGG + tig0008142:13218-13237 Msa1346080:CDS 25.0%
! GAATTTCAATGTTAAATGGA+AGG + tig0008142:13222-13241 Msa1346080:CDS 25.0%
! GTGCATTTATTTCAATGTAT+AGG + tig0008142:13259-13278 Msa1346080:intron 25.0%
! AAAATTACTGGTCAATACTA+AGG + tig0008142:13483-13502 Msa1346080:intron 25.0%
! GGCATCAGAAAAAAAAAAAA+TGG - tig0008142:14033-14052 Msa1346080:intergenic 25.0%
! TTTCAATTATCACTTCACAT+TGG + tig0008142:14085-14104 Msa1346080:intron 25.0%
!!! CTTATTGATTTAGTTCTTTC+AGG - tig0008142:14359-14378 Msa1346080:intergenic 25.0%
!!! CATGGTTATCTTTTTAGTTA+GGG + tig0008142:14401-14420 Msa1346080:intron 25.0%
! ATGAAAGTAATTCCAAAATC+AGG + tig0008142:14747-14766 Msa1346080:CDS 25.0%
! TCGATGTATGAATTCTTATA+GGG - tig0008142:14959-14978 Msa1346080:intergenic 25.0%
!!! TTGTTTTGGAACAATCGAAA+TGG - tig0008142:11602-11621 Msa1346080:intergenic 30.0%
TTTCGATTGTTCCAAAACAA+AGG + tig0008142:11602-11621 Msa1346080:five_prime_UTR 30.0%
!!! TTTTTGAGGGGTGTTTATTT+AGG + tig0008142:12011-12030 Msa1346080:five_prime_UTR 30.0%
GGTGTTTATTTAGGCATTAA+AGG + tig0008142:12020-12039 Msa1346080:five_prime_UTR 30.0%
ATTAAAGGGTAGCATCATAT+AGG + tig0008142:12035-12054 Msa1346080:five_prime_UTR 30.0%
! ATCATATAGGATTTGAGTTC+AGG + tig0008142:12048-12067 Msa1346080:five_prime_UTR 30.0%
! GTATTTGTTACTTCTTAGAG+TGG + tig0008142:12106-12125 Msa1346080:five_prime_UTR 30.0%
AAACATCACATGGCAAAAAA+TGG - tig0008142:12284-12303 Msa1346080:intergenic 30.0%
ATTGTAAACATGGGTATCAA+TGG + tig0008142:12348-12367 Msa1346080:five_prime_UTR 30.0%
GGTTGAGTGTTAAGTTTATT+TGG + tig0008142:12483-12502 Msa1346080:five_prime_UTR 30.0%
ACGTTATTAACATTGAGCTT+AGG - tig0008142:12788-12807 Msa1346080:intergenic 30.0%
CAGAAAATTTCAAAGATCAC+AGG - tig0008142:12823-12842 Msa1346080:intergenic 30.0%
AGTATTACAACCTTAGATTC+AGG + tig0008142:12855-12874 Msa1346080:CDS 30.0%
TTAAATGGAAGGGTTAGATT+TGG + tig0008142:13233-13252 Msa1346080:intron 30.0%
TAGCTTGATAGAAGTCAAAA+GGG - tig0008142:13298-13317 Msa1346080:intergenic 30.0%
! TTAGCTTGATAGAAGTCAAA+AGG - tig0008142:13299-13318 Msa1346080:intergenic 30.0%
AAATTGTATGACGGTTCAAT+TGG + tig0008142:13355-13374 Msa1346080:CDS 30.0%
TATAGCATAGGGAAAATTAC+TGG + tig0008142:13471-13490 Msa1346080:intron 30.0%
GAAGAACATTACATGGTTTA+AGG - tig0008142:13594-13613 Msa1346080:intergenic 30.0%
TCATTGAGAAGAACATTACA+TGG - tig0008142:13601-13620 Msa1346080:intergenic 30.0%
AATCCGTTTCAAATGACATA+GGG - tig0008142:13762-13781 Msa1346080:intergenic 30.0%
!! CATGTTTTGAGTATGATTTG+AGG + tig0008142:13938-13957 Msa1346080:CDS 30.0%
TTATGATCATGACCGATTAT+TGG + tig0008142:14169-14188 Msa1346080:intron 30.0%
ATTCCTGTGATGTATTATCT+TGG + tig0008142:14287-14306 Msa1346080:intron 30.0%
TTCCTGTGATGTATTATCTT+GGG + tig0008142:14288-14307 Msa1346080:intron 30.0%
!!! GCATGGTTATCTTTTTAGTT+AGG + tig0008142:14400-14419 Msa1346080:intron 30.0%
!!! TTTTGAGATTTGCATGAGTT+GGG - tig0008142:14849-14868 Msa1346080:intergenic 30.0%
! ATTATGGATTTGTTCTAGTG+AGG + tig0008142:14916-14935 Msa1346080:CDS 30.0%
! TTATGGATTTGTTCTAGTGA+GGG + tig0008142:14917-14936 Msa1346080:CDS 30.0%
GTCGATGTATGAATTCTTAT+AGG - tig0008142:14960-14979 Msa1346080:intergenic 30.0%
TCTTGGAGAAACAAAGAACT+AGG - tig0008142:11577-11596 Msa1346080:intergenic 35.0%
GAACAATCGAAATGGAATCT+TGG - tig0008142:11594-11613 Msa1346080:intergenic 35.0%
!! GTATCTGTTGACTTTCTTGT+TGG + tig0008142:11903-11922 Msa1346080:five_prime_UTR 35.0%
ATCACATGGCAAAAAATGGA+GGG - tig0008142:12280-12299 Msa1346080:intergenic 35.0%
GATAGTGTAGAAACATCACA+TGG - tig0008142:12294-12313 Msa1346080:intergenic 35.0%
TCTTTCGGGATTGTAAACAT+GGG + tig0008142:12339-12358 Msa1346080:five_prime_UTR 35.0%
AGTGTTAAGTTTATTTGGGG+TGG + tig0008142:12488-12507 Msa1346080:five_prime_UTR 35.0%
TCTAGACATTCCTGAATCTA+AGG - tig0008142:12868-12887 Msa1346080:intergenic 35.0%
GATGTTACATCCAATCAAAG+AGG + tig0008142:13118-13137 Msa1346080:CDS 35.0%
TTCACATGATCCTCTTTGAT+TGG - tig0008142:13131-13150 Msa1346080:intergenic 35.0%
! TCTCATTACCTGATGTTTTG+AGG + tig0008142:13410-13429 Msa1346080:CDS 35.0%
! ATGGTTTAAGGTTGAGAACA+AGG - tig0008142:13582-13601 Msa1346080:intergenic 35.0%
GAATCCGTTTCAAATGACAT+AGG - tig0008142:13763-13782 Msa1346080:intergenic 35.0%
! TGTCATTTGAAACGGATTCA+TGG + tig0008142:13764-13783 Msa1346080:CDS 35.0%
! GTCATTTGAAACGGATTCAT+GGG + tig0008142:13765-13784 Msa1346080:CDS 35.0%
! TCATTTGAAACGGATTCATG+GGG + tig0008142:13766-13785 Msa1346080:CDS 35.0%
ACCAGTCAACATTTCAACAA+CGG - tig0008142:13803-13822 Msa1346080:intergenic 35.0%
! TGTCCTGTTGGTGAAATATA+CGG + tig0008142:13841-13860 Msa1346080:CDS 35.0%
ATATTCTGCGCGTCTTTAAA+AGG + tig0008142:13980-13999 Msa1346080:CDS 35.0%
TCCTGTGAATATTCCAAGAT+TGG + tig0008142:14206-14225 Msa1346080:intron 35.0%
CCTGTGAATATTCCAAGATT+GGG + tig0008142:14207-14226 Msa1346080:intron 35.0%
TGAATATTCCAAGATTGGGT+AGG + tig0008142:14211-14230 Msa1346080:intron 35.0%
AGGAATACAGCTAATCTAGA+AGG - tig0008142:14273-14292 Msa1346080:intergenic 35.0%
TTCCCAAGATAATACATCAC+AGG - tig0008142:14293-14312 Msa1346080:intergenic 35.0%
!!! CTTGGGAAGTGTTTACATTT+TGG + tig0008142:14305-14324 Msa1346080:intron 35.0%
ATTCTTAACATGTGCCATGA+GGG - tig0008142:14442-14461 Msa1346080:intergenic 35.0%
AATTCTTAACATGTGCCATG+AGG - tig0008142:14443-14462 Msa1346080:intergenic 35.0%
!! CTTCTTAACTTGTGCCTTAA+GGG + tig0008142:14564-14583 Msa1346080:intron 35.0%
AATGTTATCTTGTGCCCTTA+AGG - tig0008142:14581-14600 Msa1346080:intergenic 35.0%
!!! GTTTTGAGATTTGCATGAGT+TGG - tig0008142:14850-14869 Msa1346080:intergenic 35.0%
TTAGAACGTACTGCAGATTA+TGG + tig0008142:14900-14919 Msa1346080:CDS 35.0%
!! TCTGTTGACTTTCTTGTTGG+TGG + tig0008142:11906-11925 Msa1346080:five_prime_UTR 40.0%
!! TTTCTTGTTGGTGGTTGATG+AGG + tig0008142:11915-11934 Msa1346080:five_prime_UTR 40.0%
!! TTCTTGTTGGTGGTTGATGA+GGG + tig0008142:11916-11935 Msa1346080:five_prime_UTR 40.0%
TTGATGAGGGAACAAGTGAT+TGG + tig0008142:11929-11948 Msa1346080:five_prime_UTR 40.0%
AATCTGCAGTTAAGCGTGTT+TGG + tig0008142:12198-12217 Msa1346080:five_prime_UTR 40.0%
CATCACATGGCAAAAAATGG+AGG - tig0008142:12281-12300 Msa1346080:intergenic 40.0%
AAGAAGGGGGAAATGTCTTT+CGG + tig0008142:12324-12343 Msa1346080:five_prime_UTR 40.0%
GTCTTTCGGGATTGTAAACA+TGG + tig0008142:12338-12357 Msa1346080:five_prime_UTR 40.0%
GTAAACATGGGTATCAATGG+CGG + tig0008142:12351-12370 Msa1346080:five_prime_UTR 40.0%
! TTGTTGTTGCTCAGACAACA+AGG + tig0008142:12664-12683 Msa1346080:five_prime_UTR 40.0%
AGGAATGTCTAGAGAAGTCA+TGG + tig0008142:12875-12894 Msa1346080:CDS 40.0%
! AAAGGTTCAGGTTCAATCCA+TGG - tig0008142:12993-13012 Msa1346080:intergenic 40.0%
TGCTGAAGTTTCAAAGGTTC+AGG - tig0008142:13005-13024 Msa1346080:intergenic 40.0%
!! ATTCGGTGCTGAAGTTTCAA+AGG - tig0008142:13011-13030 Msa1346080:intergenic 40.0%
! TTGAAACTTCAGCACCGAAT+TGG + tig0008142:13011-13030 Msa1346080:CDS 40.0%
ACATCTTAGCAGCAACTTCA+TGG - tig0008142:13103-13122 Msa1346080:intergenic 40.0%
! GAATTATGCTTGAAGTGCCA+AGG + tig0008142:13173-13192 Msa1346080:CDS 40.0%
AGCAAACACTAGAAACTCCT+TGG - tig0008142:13193-13212 Msa1346080:intergenic 40.0%
!! AAGGAGTTTCTAGTGTTTGC+TGG + tig0008142:13192-13211 Msa1346080:CDS 40.0%
! TCTAGTGTTTGCTGGTTACA+TGG + tig0008142:13200-13219 Msa1346080:CDS 40.0%
AAGTTGGCTAGACTAAGAGA+TGG + tig0008142:13382-13401 Msa1346080:CDS 40.0%
ACACATCACCTCAAAACATC+AGG - tig0008142:13421-13440 Msa1346080:intergenic 40.0%
GGTCAATACTAAGGATGTGT+TGG + tig0008142:13492-13511 Msa1346080:intron 40.0%
! AAGGATGTGTTGGTCGTTAA+TGG + tig0008142:13502-13521 Msa1346080:intron 40.0%
!! ATTCTAGAGCTTCACGCTAA+AGG + tig0008142:13553-13572 Msa1346080:CDS 40.0%
!! TTCTAGAGCTTCACGCTAAA+GGG + tig0008142:13554-13573 Msa1346080:CDS 40.0%
! TGACAACGATCAAGCGATTT+TGG + tig0008142:13618-13637 Msa1346080:CDS 40.0%
! GACAACGATCAAGCGATTTT+GGG + tig0008142:13619-13638 Msa1346080:CDS 40.0%
! GGTATTCCCAATCTTTTGCT+TGG + tig0008142:13649-13668 Msa1346080:CDS 40.0%
GAAGAGCCAAGCAAAAGATT+GGG - tig0008142:13658-13677 Msa1346080:intergenic 40.0%
TGAAGAGCCAAGCAAAAGAT+TGG - tig0008142:13659-13678 Msa1346080:intergenic 40.0%
TTAGCTCAGATATTGCTCAG+AGG + tig0008142:13683-13702 Msa1346080:CDS 40.0%
GCTTGGAAGTCCTAATTACA+TGG + tig0008142:13705-13724 Msa1346080:CDS 40.0%
!! TGTTCTGGAGCCATGTAATT+AGG - tig0008142:13718-13737 Msa1346080:intergenic 40.0%
ATTACATGGCTCCAGAACAA+TGG + tig0008142:13719-13738 Msa1346080:CDS 40.0%
! AGGCCCTATGTCATTTGAAA+CGG + tig0008142:13756-13775 Msa1346080:CDS 40.0%
ACCGTTGTTGAAATGTTGAC+TGG + tig0008142:13799-13818 Msa1346080:CDS 40.0%
GATCCGTATATTTCACCAAC+AGG - tig0008142:13847-13866 Msa1346080:intergenic 40.0%
TATTCTCAATGGGAGAAGGA+AGG - tig0008142:13909-13928 Msa1346080:intergenic 40.0%
AGGATATTCTCAATGGGAGA+AGG - tig0008142:13913-13932 Msa1346080:intergenic 40.0%
TCTCCCATTGAGAATATCCT+TGG + tig0008142:13913-13932 Msa1346080:CDS 40.0%
GCACCAAGGATATTCTCAAT+GGG - tig0008142:13919-13938 Msa1346080:intergenic 40.0%
TGCACCAAGGATATTCTCAA+TGG - tig0008142:13920-13939 Msa1346080:intergenic 40.0%
CATACTCAAAACATGCACCA+AGG - tig0008142:13933-13952 Msa1346080:intergenic 40.0%
TTTGAGGAATCGACCTTCAA+TGG + tig0008142:13954-13973 Msa1346080:CDS 40.0%
CGCAGAATATCTACCATTGA+AGG - tig0008142:13970-13989 Msa1346080:intergenic 40.0%
GGTACAGGTTCACCAATAAT+CGG - tig0008142:14184-14203 Msa1346080:intergenic 40.0%
AATATTCACAGGACAGGTAC+AGG - tig0008142:14199-14218 Msa1346080:intergenic 40.0%
TCTTGGAATATTCACAGGAC+AGG - tig0008142:14205-14224 Msa1346080:intergenic 40.0%
CCCAATCTTGGAATATTCAC+AGG - tig0008142:14210-14229 Msa1346080:intergenic 40.0%
TTCAGGTACAGACATTATCC+TGG - tig0008142:14342-14361 Msa1346080:intergenic 40.0%
!! GCTTCTTAACTTGTGCCTTA+AGG + tig0008142:14563-14582 Msa1346080:intron 40.0%
ATTCATTCTGCCTATGTTGC+AGG + tig0008142:14673-14692 Msa1346080:intron 40.0%
CTGAATGAACTGGCTAATGA+TGG + tig0008142:14699-14718 Msa1346080:CDS 40.0%
AATGAACTGGCTAATGATGG+AGG + tig0008142:14702-14721 Msa1346080:CDS 40.0%
TCAAAGGATCAACTTCAGGT+GGG + tig0008142:14798-14817 Msa1346080:CDS 40.0%
CAAAACATGAATGTCCCAGA+CGG + tig0008142:14864-14883 Msa1346080:CDS 40.0%
TTATAGGGTCATGAATACCG+TGG - tig0008142:14944-14963 Msa1346080:intergenic 40.0%
CGCTTAACTGCAGATTCTGA+TGG - tig0008142:12194-12213 Msa1346080:intergenic 45.0%
TGTTTGGCCGAGAGTAATAC+TGG + tig0008142:12214-12233 Msa1346080:five_prime_UTR 45.0%
GTTTGGCCGAGAGTAATACT+GGG + tig0008142:12215-12234 Msa1346080:five_prime_UTR 45.0%
ACCCATCCCAGTATTACTCT+CGG - tig0008142:12224-12243 Msa1346080:intergenic 45.0%
AGAAGGGGGAAATGTCTTTC+GGG + tig0008142:12325-12344 Msa1346080:five_prime_UTR 45.0%
! TCGGAACAGCAGCAGTTTTA+GGG - tig0008142:12956-12975 Msa1346080:intergenic 45.0%
GCAAGCCAAACATCACCAAA+GGG - tig0008142:13044-13063 Msa1346080:intergenic 45.0%
TGCAAGCCAAACATCACCAA+AGG - tig0008142:13045-13064 Msa1346080:intergenic 45.0%
! CGGTTCAATTGGTGACAAGT+TGG + tig0008142:13366-13385 Msa1346080:CDS 45.0%
TGGCTAGACTAAGAGATGGA+TGG + tig0008142:13386-13405 Msa1346080:CDS 45.0%
! ATGTGTTGGTCGTTAATGGC+AGG + tig0008142:13506-13525 Msa1346080:intron 45.0%
TTGGTCGTTAATGGCAGGTA+CGG + tig0008142:13511-13530 Msa1346080:intron 45.0%
TCAGATATTGCTCAGAGGCT+TGG + tig0008142:13688-13707 Msa1346080:CDS 45.0%
TCCAGAACAATGGAAACCAG+AGG + tig0008142:13729-13748 Msa1346080:CDS 45.0%
! ACCTCTGGTTTCCATTGTTC+TGG - tig0008142:13733-13752 Msa1346080:intergenic 45.0%
! GAAACGGATTCATGGGGATT+CGG + tig0008142:13772-13791 Msa1346080:CDS 45.0%
! TGTTGACTGGTAGTCAACCT+TGG + tig0008142:13812-13831 Msa1346080:CDS 45.0%
ACTGGTAGTCAACCTTGGTA+TGG + tig0008142:13817-13836 Msa1346080:CDS 45.0%
GAAAAGCTGCATATCCCAAG+TGG + tig0008142:13883-13902 Msa1346080:CDS 45.0%
ACAACAGACCTACCCAATCT+TGG - tig0008142:14222-14241 Msa1346080:intergenic 45.0%
AGATTGGGTAGGTCTGTTGT+AGG + tig0008142:14222-14241 Msa1346080:intron 45.0%
TGTTGTAGGACTAGAGCTCA+AGG + tig0008142:14236-14255 Msa1346080:intron 45.0%
!!! ATTTTGGCTTCCTCTGATCC+AGG + tig0008142:14321-14340 Msa1346080:intron 45.0%
CAGACATTATCCTGGATCAG+AGG - tig0008142:14334-14353 Msa1346080:intergenic 45.0%
CATTCAGTGACCTGCAACAT+AGG - tig0008142:14686-14705 Msa1346080:intergenic 45.0%
TTGCAGGTCACTGAATGAAC+TGG + tig0008142:14689-14708 Msa1346080:intron 45.0%
! TAGTCAGTGCTGCCTGATTT+TGG - tig0008142:14762-14781 Msa1346080:intergenic 45.0%
! ATCCTTTGAGAGGAACCACT+CGG - tig0008142:14787-14806 Msa1346080:intergenic 45.0%
! CCTGAAGTTGATCCTTTGAG+AGG - tig0008142:14797-14816 Msa1346080:intergenic 45.0%
CCTCTCAAAGGATCAACTTC+AGG + tig0008142:14794-14813 Msa1346080:CDS 45.0%
CTCAAAGGATCAACTTCAGG+TGG + tig0008142:14797-14816 Msa1346080:CDS 45.0%
! TGAGATTTGCATGAGTTGGG+AGG - tig0008142:14846-14865 Msa1346080:intergenic 45.0%
TTTGTTCTAGTGAGGGTCCA+CGG + tig0008142:14924-14943 Msa1346080:CDS 45.0%
GCCGAGAGTAATACTGGGAT+GGG + tig0008142:12220-12239 Msa1346080:five_prime_UTR 50.0%
GAGGGATGAAGTGCAACACA+AGG - tig0008142:12262-12281 Msa1346080:intergenic 50.0%
!!! AGCAGCAGTTTTAGGGACGT+CGG - tig0008142:12949-12968 Msa1346080:intergenic 50.0%
! GTCGGAACAGCAGCAGTTTT+AGG - tig0008142:12957-12976 Msa1346080:intergenic 50.0%
AATCCATGGACTTGCGCGAT+TGG - tig0008142:12979-12998 Msa1346080:intergenic 50.0%
CAAAGGGTCCTCGACCAATT+CGG - tig0008142:13028-13047 Msa1346080:intergenic 50.0%
!! GAGGACCCTTTGGTGATGTT+TGG + tig0008142:13036-13055 Msa1346080:CDS 50.0%
TGGTCGTTAATGGCAGGTAC+GGG + tig0008142:13512-13531 Msa1346080:intron 50.0%
!! CAAGCGATTTTGGGAGACGT+TGG + tig0008142:13628-13647 Msa1346080:CDS 50.0%
CAATGGAAACCAGAGGTCAG+AGG + tig0008142:13736-13755 Msa1346080:CDS 50.0%
CCAACAGGACATCCATACCA+AGG - tig0008142:13832-13851 Msa1346080:intergenic 50.0%
CCTTGGTATGGATGTCCTGT+TGG + tig0008142:13829-13848 Msa1346080:CDS 50.0%
AAGCTGTTTGTGCACGAGCA+TGG + tig0008142:14383-14402 Msa1346080:intron 50.0%
AGTGTTAACGTGTGCCCTCA+TGG + tig0008142:14425-14444 Msa1346080:intron 50.0%
! GAACTGGCTAATGATGGAGG+AGG + tig0008142:14705-14724 Msa1346080:CDS 50.0%
! TGGCTAATGATGGAGGAGGA+TGG + tig0008142:14709-14728 Msa1346080:CDS 50.0%
GGAGGAGGATGGAGATATCA+AGG + tig0008142:14720-14739 Msa1346080:CDS 50.0%
TCAACTTCAGGTGGGTGACA+TGG + tig0008142:14806-14825 Msa1346080:CDS 50.0%
AGTTGGGAGGCTTTCTGGAT+CGG - tig0008142:14833-14852 Msa1346080:intergenic 50.0%
GGCCGAGAGTAATACTGGGA+TGG + tig0008142:12219-12238 Msa1346080:five_prime_UTR 55.0%
CAACACAAGGACTTCCCAGG+AGG - tig0008142:12249-12268 Msa1346080:intergenic 55.0%
GTGCAACACAAGGACTTCCC+AGG - tig0008142:12252-12271 Msa1346080:intergenic 55.0%
CATGGACTTGCGCGATTGGT+CGG - tig0008142:12975-12994 Msa1346080:intergenic 55.0%
! CTTCAGCACCGAATTGGTCG+AGG + tig0008142:13017-13036 Msa1346080:CDS 55.0%
CGAATTGGTCGAGGACCCTT+TGG + tig0008142:13026-13045 Msa1346080:CDS 55.0%
! TACGGGATCGATCTGGCTCA+AGG + tig0008142:13529-13548 Msa1346080:CDS 55.0%
TGGGAGAAGGAAGGCCACTT+GGG - tig0008142:13900-13919 Msa1346080:intergenic 55.0%
ATGGGAGAAGGAAGGCCACT+TGG - tig0008142:13901-13920 Msa1346080:intergenic 55.0%
CACCGAGTGGTTCCTCTCAA+AGG + tig0008142:14782-14801 Msa1346080:CDS 55.0%
! GCATGAGTTGGGAGGCTTTC+TGG - tig0008142:14838-14857 Msa1346080:intergenic 55.0%
AGCCAACGACAGTTCCGTCT+GGG - tig0008142:14881-14900 Msa1346080:intergenic 55.0%
AAGCCAACGACAGTTCCGTC+TGG - tig0008142:14882-14901 Msa1346080:intergenic 55.0%
TACTGGGATGGGTGACCTCC+TGG + tig0008142:12231-12250 Msa1346080:five_prime_UTR 60.0%
ACTGGGATGGGTGACCTCCT+GGG + tig0008142:12232-12251 Msa1346080:five_prime_UTR 60.0%
CGACCAATCGCGCAAGTCCA+TGG + tig0008142:12973-12992 Msa1346080:CDS 60.0%
TGGCAGGTACGGGATCGATC+TGG + tig0008142:13522-13541 Msa1346080:intron 60.0%
GACATAGGGCCTCTGACCTC+TGG - tig0008142:13748-13767 Msa1346080:intergenic 60.0%
!! GCAGCACTGACTACACCGAG+TGG + tig0008142:14769-14788 Msa1346080:CDS 60.0%
GTCCCAGACGGAACTGTCGT+TGG + tig0008142:14876-14895 Msa1346080:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0008142 gene 11547 14998 11547 ID=Msa1346080;Name=Msa1346080
tig0008142 mRNA 11547 14998 11547 ID=Msa1346080-mRNA-1;Parent=Msa1346080;Name=Msa1346080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1305|1|0.75|1|1|1|4|0|421
tig0008142 exon 11547 13244 11547 ID=Msa1346080-mRNA-1:exon:5332;Parent=Msa1346080-mRNA-1
tig0008142 exon 13340 13431 13340 ID=Msa1346080-mRNA-1:exon:5333;Parent=Msa1346080-mRNA-1
tig0008142 exon 13528 14001 13528 ID=Msa1346080-mRNA-1:exon:5334;Parent=Msa1346080-mRNA-1
tig0008142 exon 14695 14998 14695 ID=Msa1346080-mRNA-1:exon:5335;Parent=Msa1346080-mRNA-1
tig0008142 five_prime_UTR 11547 12851 11547 ID=Msa1346080-mRNA-1:five_prime_utr;Parent=Msa1346080-mRNA-1
tig0008142 CDS 12852 13244 12852 ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1
tig0008142 CDS 13340 13431 13340 ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1
tig0008142 CDS 13528 14001 13528 ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1
tig0008142 CDS 14695 14998 14695 ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1
Gene Sequence

>Msa1346080

ATGAGTATTACAACCTTAGATTCAGGAATGTCTAGAGAAGTCATGGCTTCTTCATCAGCTGCTTCTTTTGATTATGAGATTTTGGATAAAGATACCGACGTCCCTAAAACTGCTGCTGTTCCGACCAATCGCGCAAGTCCATGGATTGAACCTGAACCTTTGAAACTTCAGCACCGAATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGAAGATTATGATGAGCACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATCATGTGAAGATTGTATTGAAGAAATTCAATGAATTATGCTTGAAGTGCCAAGGAGTTTCTAGTGTTTGCTGGTTACATGGAATTTCAATGTTAAATGGAAGGATCTGCATCATTATGAAATTGTATGACGGTTCAATTGGTGACAAGTTGGCTAGACTAAGAGATGGATGGATCTCATTACCTGATGTTTTGAGGTACGGGATCGATCTGGCTCAAGGCATTCTAGAGCTTCACGCTAAAGGGATCCTTGTTCTCAACCTTAAACCATGTAATGTTCTTCTCAATGACAACGATCAAGCGATTTTGGGAGACGTTGGTATTCCCAATCTTTTGCTTGGCTCTTCATTCGTTAGCTCAGATATTGCTCAGAGGCTTGGAAGTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAGGTCAGAGGCCCTATGTCATTTGAAACGGATTCATGGGGATTCGGATGCACCGTTGTTGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTGGTGAAATATACGGATCAGTTGTCGAAAAGCATGAAAAGCTGCATATCCCAAGTGGCCTTCCTTCTCCCATTGAGAATATCCTTGGTGCATGTTTTGAGTATGATTTGAGGAATCGACCTTCAATGGTAGATATTCTGCGCGTCTTTAAAAGGTCACTGAATGAACTGGCTAATGATGGAGGAGGATGGAGATATCAAGGAAACATGAAAGTAATTCCAAAATCAGGCAGCACTGACTACACCGAGTGGTTCCTCTCAAAGGATCAACTTCAGGTGGGTGACATGGTCCGATCCAGAAAGCCTCCCAACTCATGCAAATCTCAAAACATGAATGTCCCAGACGGAACTGTCGTTGGCTTAGAACGTACTGCAGATTATGGATTTGTTCTAGTGAGGGTCCACGGTATTCATGACCCTATAAGAATTCATACATCGACTCTTGAACGCGTCACGAAT

Protein sequence

>Msa1346080

MSITTLDSGMSREVMASSSAASFDYEILDKDTDVPKTAAVPTNRASPWIEPEPLKLQHRIGRGPFGDVWLATLHQSTEDYDEHHEVAAKMLHPIKEDHVKIVLKKFNELCLKCQGVSSVCWLHGISMLNGRICIIMKLYDGSIGDKLARLRDGWISLPDVLRYGIDLAQGILELHAKGILVLNLKPCNVLLNDNDQAILGDVGIPNLLLGSSFVSSDIAQRLGSPNYMAPEQWKPEVRGPMSFETDSWGFGCTVVEMLTGSQPWYGCPVGEIYGSVVEKHEKLHIPSGLPSPIENILGACFEYDLRNRPSMVDILRVFKRSLNELANDGGGWRYQGNMKVIPKSGSTDYTEWFLSKDQLQVGDMVRSRKPPNSCKSQNMNVPDGTVVGLERTADYGFVLVRVHGIHDPIRIHTSTLERVTN