Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1346080 | AES59028.2 | 95.487 | 421 | 19 | 0 | 1 | 421 | 1 | 421 | 0.0 | 834 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1346080 | sp|Q9FY48|KEG_ARATH | 31.894 | 301 | 172 | 9 | 54 | 325 | 137 | 433 | 9.17e-37 | 146 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1346080 | G7I717 | 95.487 | 421 | 19 | 0 | 1 | 421 | 1 | 421 | 0.0 | 834 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006650 | Msa1346080 | 0.900795 | 5.121528e-78 | -8.615850e-47 |
Msa0055240 | Msa1346080 | 0.920217 | 1.691706e-87 | -8.615850e-47 |
Msa0079390 | Msa1346080 | 0.801591 | 8.374928e-49 | -8.615850e-47 |
Msa0101120 | Msa1346080 | 0.935989 | 3.548480e-97 | -8.615850e-47 |
Msa1346080 | Msa1377080 | 0.802367 | 5.801495e-49 | -8.615850e-47 |
Msa1346080 | Msa1390350 | 0.823048 | 1.708625e-53 | -8.615850e-47 |
Msa1346080 | Msa1459950 | 0.811503 | 6.775685e-51 | -8.615850e-47 |
Msa0688070 | Msa1346080 | 0.803840 | 2.877432e-49 | -8.615850e-47 |
Msa0723870 | Msa1346080 | 0.831366 | 1.738497e-55 | -8.615850e-47 |
Msa0763400 | Msa1346080 | 0.809369 | 1.958176e-50 | -8.615850e-47 |
Msa0832320 | Msa1346080 | 0.816019 | 6.862770e-52 | -8.615850e-47 |
Msa0122580 | Msa1346080 | 0.800713 | 1.266524e-48 | -8.615850e-47 |
Msa0189110 | Msa1346080 | 0.830311 | 3.154590e-55 | -8.615850e-47 |
Msa0196160 | Msa1346080 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
Msa0206010 | Msa1346080 | 0.803170 | 3.962010e-49 | -8.615850e-47 |
Msa0231240 | Msa1346080 | 0.830104 | 3.543042e-55 | -8.615850e-47 |
Msa0237310 | Msa1346080 | 0.816463 | 5.458853e-52 | -8.615850e-47 |
Msa1333730 | Msa1346080 | 0.818389 | 2.011072e-52 | -8.615850e-47 |
Msa0439970 | Msa1346080 | 0.811524 | 6.707715e-51 | -8.615850e-47 |
Msa0475490 | Msa1346080 | 0.809833 | 1.556006e-50 | -8.615850e-47 |
Msa0248370 | Msa1346080 | 0.821559 | 3.786167e-53 | -8.615850e-47 |
Msa0249100 | Msa1346080 | 0.825626 | 4.230031e-54 | -8.615850e-47 |
Msa0274730 | Msa1346080 | 0.817095 | 3.938058e-52 | -8.615850e-47 |
Msa0315290 | Msa1346080 | 0.826928 | 2.072441e-54 | -8.615850e-47 |
Msa0315530 | Msa1346080 | 0.804181 | 2.443643e-49 | -8.615850e-47 |
Msa0323370 | Msa1346080 | 0.832098 | 1.147385e-55 | -8.615850e-47 |
Msa0344530 | Msa1346080 | 0.803968 | 2.705893e-49 | -8.615850e-47 |
Msa1158670 | Msa1346080 | 0.804753 | 1.856638e-49 | -8.615850e-47 |
Msa1224480 | Msa1346080 | 0.802822 | 4.674888e-49 | -8.615850e-47 |
Msa0847210 | Msa1346080 | 0.810162 | 1.321942e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1346080 | MtrunA17_Chr1g0149451 | 95.411 | 414 | 19 | 0 | 8 | 421 | 9 | 422 | 0.0 | 822 |
Msa1346080 | MtrunA17_Chr3g0082141 | 31.229 | 301 | 175 | 6 | 52 | 325 | 141 | 436 | 1.34e-37 | 145 |
Msa1346080 | MtrunA17_Chr1g0164561 | 33.333 | 219 | 120 | 4 | 132 | 325 | 7 | 224 | 2.58e-35 | 130 |
Msa1346080 | MtrunA17_Chr5g0406251 | 26.689 | 296 | 193 | 10 | 35 | 325 | 275 | 551 | 1.06e-22 | 100 |
Msa1346080 | MtrunA17_Chr4g0047211 | 29.293 | 198 | 132 | 3 | 133 | 329 | 116 | 306 | 2.24e-20 | 91.7 |
Msa1346080 | MtrunA17_Chr4g0047191 | 29.293 | 198 | 132 | 3 | 133 | 329 | 121 | 311 | 2.28e-20 | 92.0 |
Msa1346080 | MtrunA17_Chr5g0427651 | 25.497 | 302 | 203 | 8 | 33 | 327 | 623 | 909 | 2.34e-19 | 90.9 |
Msa1346080 | MtrunA17_Chr4g0047201 | 28.283 | 198 | 134 | 3 | 133 | 329 | 277 | 467 | 1.26e-18 | 87.8 |
Msa1346080 | MtrunA17_Chr2g0282321 | 29.293 | 198 | 132 | 3 | 133 | 329 | 238 | 428 | 6.10e-18 | 85.5 |
Msa1346080 | MtrunA17_Chr3g0132791 | 25.733 | 307 | 203 | 9 | 33 | 329 | 630 | 921 | 1.32e-17 | 85.5 |
Msa1346080 | MtrunA17_Chr1g0211611 | 24.917 | 301 | 200 | 11 | 39 | 333 | 285 | 565 | 1.38e-17 | 85.1 |
Msa1346080 | MtrunA17_Chr3g0117811 | 21.802 | 344 | 225 | 9 | 1 | 319 | 11 | 335 | 2.17e-16 | 80.1 |
Msa1346080 | MtrunA17_Chr3g0133541 | 26.642 | 274 | 179 | 8 | 60 | 324 | 313 | 573 | 3.08e-16 | 80.9 |
Msa1346080 | MtrunA17_Chr8g0392871 | 25.180 | 278 | 183 | 9 | 47 | 319 | 735 | 992 | 1.39e-14 | 76.3 |
Msa1346080 | MtrunA17_Chr2g0286501 | 35.766 | 137 | 83 | 4 | 144 | 277 | 126 | 260 | 1.62e-14 | 75.9 |
Msa1346080 | MtrunA17_Chr4g0025041 | 28.931 | 159 | 100 | 5 | 160 | 316 | 98 | 245 | 1.63e-14 | 74.7 |
Msa1346080 | MtrunA17_Chr1g0205071 | 23.810 | 189 | 137 | 3 | 133 | 320 | 173 | 355 | 3.19e-14 | 73.9 |
Msa1346080 | MtrunA17_Chr5g0394681 | 26.087 | 184 | 129 | 3 | 133 | 315 | 181 | 358 | 3.55e-14 | 73.6 |
Msa1346080 | MtrunA17_Chr6g0482711 | 31.056 | 161 | 103 | 4 | 161 | 319 | 759 | 913 | 8.39e-14 | 73.6 |
Msa1346080 | MtrunA17_Chr4g0075541 | 25.397 | 189 | 133 | 3 | 133 | 320 | 162 | 343 | 1.92e-13 | 71.6 |
Msa1346080 | MtrunA17_Chr3g0143531 | 23.162 | 272 | 174 | 5 | 54 | 315 | 25 | 271 | 1.96e-13 | 70.5 |
Msa1346080 | MtrunA17_Chr7g0258051 | 23.308 | 266 | 190 | 6 | 52 | 316 | 14 | 266 | 2.01e-13 | 72.0 |
Msa1346080 | MtrunA17_Chr4g0038501 | 24.242 | 297 | 196 | 10 | 60 | 348 | 26 | 301 | 2.42e-13 | 72.4 |
Msa1346080 | MtrunA17_Chr1g0179331 | 28.322 | 286 | 176 | 11 | 45 | 322 | 549 | 813 | 2.56e-13 | 72.0 |
Msa1346080 | MtrunA17_Chr5g0397931 | 28.977 | 176 | 109 | 5 | 161 | 326 | 522 | 691 | 2.97e-13 | 71.6 |
Msa1346080 | MtrunA17_Chr1g0191171 | 24.841 | 314 | 197 | 10 | 24 | 319 | 650 | 942 | 4.84e-13 | 71.2 |
Msa1346080 | MtrunA17_Chr2g0294351 | 25.249 | 301 | 197 | 10 | 52 | 344 | 464 | 744 | 8.48e-13 | 70.5 |
Msa1346080 | MtrunA17_Chr8g0386981 | 25.763 | 295 | 184 | 11 | 33 | 316 | 390 | 660 | 2.87e-12 | 68.9 |
Msa1346080 | MtrunA17_Chr2g0299991 | 26.000 | 200 | 129 | 7 | 129 | 316 | 138 | 330 | 1.75e-11 | 65.5 |
Msa1346080 | MtrunA17_Chr2g0288841 | 27.941 | 272 | 147 | 13 | 60 | 315 | 11 | 249 | 3.72e-11 | 64.7 |
Msa1346080 | MtrunA17_Chr7g0244621 | 24.747 | 198 | 138 | 4 | 132 | 322 | 117 | 310 | 5.94e-11 | 63.5 |
Msa1346080 | MtrunA17_Chr2g0280701 | 27.650 | 217 | 133 | 8 | 52 | 260 | 499 | 699 | 6.42e-11 | 64.3 |
Msa1346080 | MtrunA17_Chr2g0325851 | 28.667 | 150 | 97 | 4 | 166 | 315 | 663 | 802 | 9.77e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1346080 | AT4G32250.3 | 63.591 | 401 | 135 | 4 | 24 | 421 | 14 | 406 | 0.0 | 518 |
Msa1346080 | AT4G32250.2 | 63.591 | 401 | 135 | 4 | 24 | 421 | 14 | 406 | 0.0 | 518 |
Msa1346080 | AT4G32250.1 | 63.591 | 401 | 135 | 4 | 24 | 421 | 14 | 406 | 0.0 | 518 |
Msa1346080 | AT5G13530.1 | 31.894 | 301 | 172 | 9 | 54 | 325 | 137 | 433 | 9.32e-38 | 146 |
Msa1346080 | AT5G13530.2 | 31.894 | 301 | 172 | 9 | 54 | 325 | 137 | 433 | 9.50e-38 | 146 |
Msa1346080 | AT4G24480.1 | 26.866 | 335 | 204 | 10 | 22 | 330 | 624 | 943 | 4.50e-20 | 93.6 |
Msa1346080 | AT4G24480.2 | 26.888 | 331 | 204 | 10 | 22 | 330 | 624 | 938 | 3.83e-19 | 90.5 |
Msa1346080 | AT4G24480.3 | 26.888 | 331 | 204 | 10 | 22 | 330 | 624 | 938 | 4.26e-19 | 90.5 |
Msa1346080 | AT4G35780.1 | 23.779 | 307 | 208 | 11 | 29 | 328 | 264 | 551 | 1.80e-18 | 88.2 |
Msa1346080 | AT4G38470.2 | 24.759 | 311 | 210 | 10 | 22 | 327 | 257 | 548 | 1.92e-18 | 87.8 |
Msa1346080 | AT2G17700.1 | 23.795 | 332 | 222 | 13 | 6 | 325 | 230 | 542 | 2.29e-18 | 87.8 |
Msa1346080 | AT4G38470.1 | 25.484 | 310 | 203 | 11 | 22 | 326 | 257 | 543 | 3.95e-18 | 87.0 |
Msa1346080 | AT1G05100.1 | 32.044 | 181 | 106 | 7 | 141 | 315 | 89 | 258 | 1.13e-16 | 81.3 |
Msa1346080 | AT3G63260.1 | 25.521 | 192 | 135 | 3 | 130 | 319 | 178 | 363 | 5.62e-16 | 79.7 |
Msa1346080 | AT3G01490.1 | 22.772 | 303 | 212 | 6 | 33 | 319 | 87 | 383 | 1.14e-15 | 79.0 |
Msa1346080 | AT4G26890.1 | 28.108 | 185 | 119 | 4 | 134 | 316 | 77 | 249 | 4.32e-15 | 77.4 |
Msa1346080 | AT4G38470.3 | 25.856 | 263 | 171 | 10 | 22 | 279 | 257 | 500 | 1.14e-14 | 76.3 |
Msa1346080 | AT5G01850.1 | 27.363 | 201 | 131 | 5 | 132 | 325 | 90 | 282 | 1.23e-14 | 75.1 |
Msa1346080 | AT5G01850.2 | 27.861 | 201 | 130 | 5 | 132 | 325 | 114 | 306 | 1.54e-14 | 75.1 |
Msa1346080 | AT3G46930.1 | 26.131 | 199 | 138 | 4 | 133 | 329 | 240 | 431 | 1.56e-14 | 75.9 |
Msa1346080 | AT3G46930.2 | 26.131 | 199 | 138 | 4 | 133 | 329 | 275 | 466 | 1.77e-14 | 75.5 |
Msa1346080 | AT1G08720.1 | 26.761 | 284 | 182 | 9 | 47 | 325 | 665 | 927 | 1.79e-14 | 76.3 |
Msa1346080 | AT5G11850.1 | 24.818 | 274 | 184 | 7 | 52 | 320 | 607 | 863 | 5.54e-14 | 74.7 |
Msa1346080 | AT1G62400.1 | 25.253 | 198 | 139 | 4 | 133 | 329 | 161 | 350 | 8.77e-14 | 72.8 |
Msa1346080 | AT1G73660.1 | 24.088 | 274 | 186 | 7 | 52 | 320 | 746 | 1002 | 1.69e-13 | 73.2 |
Msa1346080 | AT1G32320.1 | 26.493 | 268 | 163 | 11 | 60 | 316 | 54 | 298 | 2.53e-13 | 70.9 |
Msa1346080 | AT5G58950.1 | 25.126 | 199 | 141 | 3 | 133 | 330 | 284 | 475 | 3.29e-13 | 71.6 |
Msa1346080 | AT2G42640.4 | 28.571 | 182 | 118 | 6 | 138 | 319 | 567 | 736 | 4.74e-13 | 71.6 |
Msa1346080 | AT3G45790.1 | 28.326 | 233 | 145 | 6 | 42 | 264 | 90 | 310 | 5.69e-13 | 70.5 |
Msa1346080 | AT2G42640.1 | 28.571 | 182 | 118 | 6 | 138 | 319 | 605 | 774 | 6.28e-13 | 71.2 |
Msa1346080 | AT1G18160.1 | 24.088 | 274 | 186 | 7 | 52 | 320 | 713 | 969 | 7.10e-13 | 71.2 |
Msa1346080 | AT5G18700.1 | 33.824 | 136 | 84 | 3 | 143 | 276 | 79 | 210 | 1.01e-12 | 70.9 |
Msa1346080 | AT5G03730.2 | 26.071 | 280 | 180 | 11 | 47 | 319 | 547 | 806 | 1.05e-12 | 70.5 |
Msa1346080 | AT5G03730.1 | 26.071 | 280 | 180 | 11 | 47 | 319 | 547 | 806 | 1.05e-12 | 70.5 |
Msa1346080 | AT3G46140.1 | 27.897 | 233 | 146 | 6 | 42 | 264 | 90 | 310 | 3.64e-12 | 67.8 |
Msa1346080 | AT4G23050.1 | 29.299 | 157 | 103 | 4 | 161 | 315 | 566 | 716 | 4.62e-12 | 68.6 |
Msa1346080 | AT4G23050.2 | 29.299 | 157 | 103 | 4 | 161 | 315 | 567 | 717 | 4.70e-12 | 68.6 |
Msa1346080 | AT4G29810.3 | 27.363 | 201 | 125 | 8 | 129 | 318 | 147 | 337 | 5.82e-12 | 67.0 |
Msa1346080 | AT4G29810.1 | 27.136 | 199 | 124 | 8 | 129 | 316 | 138 | 326 | 1.66e-11 | 65.9 |
Msa1346080 | AT4G29810.2 | 27.136 | 199 | 124 | 8 | 129 | 316 | 147 | 335 | 1.91e-11 | 65.9 |
Msa1346080 | AT1G08720.2 | 25.670 | 261 | 169 | 8 | 47 | 302 | 665 | 905 | 2.40e-11 | 66.2 |
Find 150 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATGAGTTGGGAGGCTTTC+TGG | 0.085084 | tig0008142:-14852 | Msa1346080:intergenic |
AAACTCTCCTTTCTTAAAAT+TGG | 0.109577 | tig0008142:+11548 | Msa1346080:five_prime_UTR |
TGACAACGATCAAGCGATTT+TGG | 0.146585 | tig0008142:+13618 | Msa1346080:CDS |
GGTTGAGTGTTAAGTTTATT+TGG | 0.163491 | tig0008142:+12483 | Msa1346080:five_prime_UTR |
GAAGAACATTACATGGTTTA+AGG | 0.171246 | tig0008142:-13591 | Msa1346080:intergenic |
ACCTCTGGTTTCCATTGTTC+TGG | 0.192206 | tig0008142:-13730 | Msa1346080:intergenic |
CATGGAATTTCAATGTTAAA+TGG | 0.209362 | tig0008142:+13218 | Msa1346080:CDS |
TAAGTCAATGAAGATGTATT+TGG | 0.232759 | tig0008142:+12640 | Msa1346080:five_prime_UTR |
GTTGAGTGTTAAGTTTATTT+GGG | 0.240390 | tig0008142:+12484 | Msa1346080:five_prime_UTR |
TGTTCTGGAGCCATGTAATT+AGG | 0.250797 | tig0008142:-13715 | Msa1346080:intergenic |
TAAAGAAACAACCTTTGTTT+TGG | 0.297214 | tig0008142:-11613 | Msa1346080:intergenic |
TGCTGAAGTTTCAAAGGTTC+AGG | 0.298858 | tig0008142:-13002 | Msa1346080:intergenic |
GGTGTTTATTTAGGCATTAA+AGG | 0.300816 | tig0008142:+12020 | Msa1346080:five_prime_UTR |
TTAGAACGTACTGCAGATTA+TGG | 0.302417 | tig0008142:+14900 | Msa1346080:CDS |
TCTAGACATTCCTGAATCTA+AGG | 0.302873 | tig0008142:-12865 | Msa1346080:intergenic |
ATATTCTGCGCGTCTTTAAA+AGG | 0.310548 | tig0008142:+13980 | Msa1346080:CDS |
GTCGATGTATGAATTCTTAT+AGG | 0.311891 | tig0008142:-14974 | Msa1346080:intergenic |
TAGTCAGTGCTGCCTGATTT+TGG | 0.315215 | tig0008142:-14776 | Msa1346080:intergenic |
GTATCTGTTGACTTTCTTGT+TGG | 0.318605 | tig0008142:+11903 | Msa1346080:five_prime_UTR |
TTCACATGATCCTCTTTGAT+TGG | 0.322968 | tig0008142:-13128 | Msa1346080:intergenic |
TTTACTTGATATCACTTCAT+AGG | 0.337285 | tig0008142:+12435 | Msa1346080:five_prime_UTR |
AGTATTACAACCTTAGATTC+AGG | 0.360396 | tig0008142:+12855 | Msa1346080:CDS |
GAGGACCCTTTGGTGATGTT+TGG | 0.361104 | tig0008142:+13036 | Msa1346080:CDS |
TTCTAGAGCTTCACGCTAAA+GGG | 0.362481 | tig0008142:+13554 | Msa1346080:CDS |
TACTGGGATGGGTGACCTCC+TGG | 0.365679 | tig0008142:+12231 | Msa1346080:five_prime_UTR |
TGTTTGGCCGAGAGTAATAC+TGG | 0.367334 | tig0008142:+12214 | Msa1346080:five_prime_UTR |
AAGGAGTTTCTAGTGTTTGC+TGG | 0.368878 | tig0008142:+13192 | Msa1346080:CDS |
ATCATATAGGATTTGAGTTC+AGG | 0.372845 | tig0008142:+12048 | Msa1346080:five_prime_UTR |
ACATCTTAGCAGCAACTTCA+TGG | 0.384443 | tig0008142:-13100 | Msa1346080:intergenic |
TTGAAACTTCAGCACCGAAT+TGG | 0.395091 | tig0008142:+13011 | Msa1346080:CDS |
GAAACGGATTCATGGGGATT+CGG | 0.395952 | tig0008142:+13772 | Msa1346080:CDS |
CCTCTCAAAGGATCAACTTC+AGG | 0.398972 | tig0008142:+14794 | Msa1346080:CDS |
TCGATGTATGAATTCTTATA+GGG | 0.403661 | tig0008142:-14973 | Msa1346080:intergenic |
CGAATTGGTCGAGGACCCTT+TGG | 0.406343 | tig0008142:+13026 | Msa1346080:CDS |
GAACAATCGAAATGGAATCT+TGG | 0.408065 | tig0008142:-11591 | Msa1346080:intergenic |
TGAAGAGCCAAGCAAAAGAT+TGG | 0.413672 | tig0008142:-13656 | Msa1346080:intergenic |
AATCTGCAGTTAAGCGTGTT+TGG | 0.415346 | tig0008142:+12198 | Msa1346080:five_prime_UTR |
ATGAAAGTAATTCCAAAATC+AGG | 0.416519 | tig0008142:+14747 | Msa1346080:CDS |
AATCCATGGACTTGCGCGAT+TGG | 0.432685 | tig0008142:-12976 | Msa1346080:intergenic |
TGTCATTTGAAACGGATTCA+TGG | 0.434134 | tig0008142:+13764 | Msa1346080:CDS |
GGAGGAGGATGGAGATATCA+AGG | 0.438936 | tig0008142:+14720 | Msa1346080:CDS |
TCTGTTGACTTTCTTGTTGG+TGG | 0.439907 | tig0008142:+11906 | Msa1346080:five_prime_UTR |
GTGTTTATTTAGGCATTAAA+GGG | 0.442276 | tig0008142:+12021 | Msa1346080:five_prime_UTR |
TGTCCTGTTGGTGAAATATA+CGG | 0.443667 | tig0008142:+13841 | Msa1346080:CDS |
GTCATTTGAAACGGATTCAT+GGG | 0.449610 | tig0008142:+13765 | Msa1346080:CDS |
ATTCTAGAGCTTCACGCTAA+AGG | 0.452406 | tig0008142:+13553 | Msa1346080:CDS |
TTTGAGGAATCGACCTTCAA+TGG | 0.455368 | tig0008142:+13954 | Msa1346080:CDS |
TCTAGTGTTTGCTGGTTACA+TGG | 0.459137 | tig0008142:+13200 | Msa1346080:CDS |
TCTCCCATTGAGAATATCCT+TGG | 0.462519 | tig0008142:+13913 | Msa1346080:CDS |
CAAAGGGTCCTCGACCAATT+CGG | 0.467685 | tig0008142:-13025 | Msa1346080:intergenic |
ATTAAAGGGTAGCATCATAT+AGG | 0.475210 | tig0008142:+12035 | Msa1346080:five_prime_UTR |
AGTGTTAAGTTTATTTGGGG+TGG | 0.477588 | tig0008142:+12488 | Msa1346080:five_prime_UTR |
GACATAGGGCCTCTGACCTC+TGG | 0.481700 | tig0008142:-13745 | Msa1346080:intergenic |
GTCTTTCGGGATTGTAAACA+TGG | 0.483744 | tig0008142:+12338 | Msa1346080:five_prime_UTR |
AAAGGTTCAGGTTCAATCCA+TGG | 0.486677 | tig0008142:-12990 | Msa1346080:intergenic |
AGTTGGGAGGCTTTCTGGAT+CGG | 0.491406 | tig0008142:-14847 | Msa1346080:intergenic |
AAGCCAACGACAGTTCCGTC+TGG | 0.492923 | tig0008142:-14896 | Msa1346080:intergenic |
AGGCCCTATGTCATTTGAAA+CGG | 0.494592 | tig0008142:+13756 | Msa1346080:CDS |
GAAGAGCCAAGCAAAAGATT+GGG | 0.495194 | tig0008142:-13655 | Msa1346080:intergenic |
AAATTGTATGACGGTTCAAT+TGG | 0.497991 | tig0008142:+13355 | Msa1346080:CDS |
CTGAATGAACTGGCTAATGA+TGG | 0.498348 | tig0008142:+14699 | Msa1346080:CDS |
CGACCAATCGCGCAAGTCCA+TGG | 0.502376 | tig0008142:+12973 | Msa1346080:CDS |
GATCCGTATATTTCACCAAC+AGG | 0.502608 | tig0008142:-13844 | Msa1346080:intergenic |
ACGTTATTAACATTGAGCTT+AGG | 0.503963 | tig0008142:-12785 | Msa1346080:intergenic |
ATGGGAGAAGGAAGGCCACT+TGG | 0.504464 | tig0008142:-13898 | Msa1346080:intergenic |
TGCACCAAGGATATTCTCAA+TGG | 0.506987 | tig0008142:-13917 | Msa1346080:intergenic |
CGCAGAATATCTACCATTGA+AGG | 0.507993 | tig0008142:-13967 | Msa1346080:intergenic |
GAATTTCAATGTTAAATGGA+AGG | 0.512178 | tig0008142:+13222 | Msa1346080:CDS |
TTTCTTGTTGGTGGTTGATG+AGG | 0.512270 | tig0008142:+11915 | Msa1346080:five_prime_UTR |
TGGCAGGTACGGGATCGATC+TGG | 0.512572 | tig0008142:+13522 | Msa1346080:intron |
CTCAAAGGATCAACTTCAGG+TGG | 0.513886 | tig0008142:+14797 | Msa1346080:CDS |
TTATGGATTTGTTCTAGTGA+GGG | 0.514209 | tig0008142:+14917 | Msa1346080:CDS |
TCAGATATTGCTCAGAGGCT+TGG | 0.514336 | tig0008142:+13688 | Msa1346080:CDS |
TTGATGAGGGAACAAGTGAT+TGG | 0.514638 | tig0008142:+11929 | Msa1346080:five_prime_UTR |
CAGAAAATTTCAAAGATCAC+AGG | 0.514716 | tig0008142:-12820 | Msa1346080:intergenic |
ATTGTAAACATGGGTATCAA+TGG | 0.516132 | tig0008142:+12348 | Msa1346080:five_prime_UTR |
ACACATCACCTCAAAACATC+AGG | 0.516904 | tig0008142:-13418 | Msa1346080:intergenic |
CATGGACTTGCGCGATTGGT+CGG | 0.519277 | tig0008142:-12972 | Msa1346080:intergenic |
ATGGTTTAAGGTTGAGAACA+AGG | 0.524109 | tig0008142:-13579 | Msa1346080:intergenic |
AATTTCAATGTTAAATGGAA+GGG | 0.525630 | tig0008142:+13223 | Msa1346080:CDS |
TTGCAGGTCACTGAATGAAC+TGG | 0.528545 | tig0008142:+14689 | Msa1346080:intron |
CGCTTAACTGCAGATTCTGA+TGG | 0.530436 | tig0008142:-12191 | Msa1346080:intergenic |
TTTCGATTGTTCCAAAACAA+AGG | 0.530834 | tig0008142:+11602 | Msa1346080:five_prime_UTR |
AGCAAACACTAGAAACTCCT+TGG | 0.533146 | tig0008142:-13190 | Msa1346080:intergenic |
CACCGAGTGGTTCCTCTCAA+AGG | 0.541938 | tig0008142:+14782 | Msa1346080:CDS |
CCTTGGTATGGATGTCCTGT+TGG | 0.543914 | tig0008142:+13829 | Msa1346080:CDS |
ATTATGGATTTGTTCTAGTG+AGG | 0.545782 | tig0008142:+14916 | Msa1346080:CDS |
ATTCGGTGCTGAAGTTTCAA+AGG | 0.549441 | tig0008142:-13008 | Msa1346080:intergenic |
TTCTTGTTGGTGGTTGATGA+GGG | 0.549496 | tig0008142:+11916 | Msa1346080:five_prime_UTR |
GGCCGAGAGTAATACTGGGA+TGG | 0.549570 | tig0008142:+12219 | Msa1346080:five_prime_UTR |
GAATCCGTTTCAAATGACAT+AGG | 0.550959 | tig0008142:-13760 | Msa1346080:intergenic |
TCATTGAGAAGAACATTACA+TGG | 0.551201 | tig0008142:-13598 | Msa1346080:intergenic |
GCCGAGAGTAATACTGGGAT+GGG | 0.551397 | tig0008142:+12220 | Msa1346080:five_prime_UTR |
GCACCAAGGATATTCTCAAT+GGG | 0.552742 | tig0008142:-13916 | Msa1346080:intergenic |
TCTTGGAGAAACAAAGAACT+AGG | 0.554643 | tig0008142:-11574 | Msa1346080:intergenic |
ACTGGTAGTCAACCTTGGTA+TGG | 0.562801 | tig0008142:+13817 | Msa1346080:CDS |
TGAGATTTGCATGAGTTGGG+AGG | 0.563242 | tig0008142:-14860 | Msa1346080:intergenic |
TTGAGTGTTAAGTTTATTTG+GGG | 0.563417 | tig0008142:+12485 | Msa1346080:five_prime_UTR |
AGCCAACGACAGTTCCGTCT+GGG | 0.566135 | tig0008142:-14895 | Msa1346080:intergenic |
ACTGGGATGGGTGACCTCCT+GGG | 0.566628 | tig0008142:+12232 | Msa1346080:five_prime_UTR |
AGGAATGTCTAGAGAAGTCA+TGG | 0.568023 | tig0008142:+12875 | Msa1346080:CDS |
GTGCAACACAAGGACTTCCC+AGG | 0.568792 | tig0008142:-12249 | Msa1346080:intergenic |
GTATTTACATATTTATTCCG+AGG | 0.570546 | tig0008142:+12553 | Msa1346080:five_prime_UTR |
TGGCTAATGATGGAGGAGGA+TGG | 0.574319 | tig0008142:+14709 | Msa1346080:CDS |
ATTACATGGCTCCAGAACAA+TGG | 0.575533 | tig0008142:+13719 | Msa1346080:CDS |
TCAACTTCAGGTGGGTGACA+TGG | 0.577067 | tig0008142:+14806 | Msa1346080:CDS |
GTATTTGTTACTTCTTAGAG+TGG | 0.581235 | tig0008142:+12106 | Msa1346080:five_prime_UTR |
TGCAAGCCAAACATCACCAA+AGG | 0.581260 | tig0008142:-13042 | Msa1346080:intergenic |
AGGATATTCTCAATGGGAGA+AGG | 0.581766 | tig0008142:-13910 | Msa1346080:intergenic |
TTTGTTCTAGTGAGGGTCCA+CGG | 0.582005 | tig0008142:+14924 | Msa1346080:CDS |
ACCCATCCCAGTATTACTCT+CGG | 0.582388 | tig0008142:-12221 | Msa1346080:intergenic |
TGGGAGAAGGAAGGCCACTT+GGG | 0.586231 | tig0008142:-13897 | Msa1346080:intergenic |
CGGTTCAATTGGTGACAAGT+TGG | 0.586939 | tig0008142:+13366 | Msa1346080:CDS |
AATCCGTTTCAAATGACATA+GGG | 0.587008 | tig0008142:-13759 | Msa1346080:intergenic |
TTGTTGTTGCTCAGACAACA+AGG | 0.587800 | tig0008142:+12664 | Msa1346080:five_prime_UTR |
TACGGGATCGATCTGGCTCA+AGG | 0.590380 | tig0008142:+13529 | Msa1346080:CDS |
TGGCTAGACTAAGAGATGGA+TGG | 0.594983 | tig0008142:+13386 | Msa1346080:CDS |
GATGTTACATCCAATCAAAG+AGG | 0.595757 | tig0008142:+13118 | Msa1346080:CDS |
GCAAGCCAAACATCACCAAA+GGG | 0.597883 | tig0008142:-13041 | Msa1346080:intergenic |
GAATTATGCTTGAAGTGCCA+AGG | 0.602260 | tig0008142:+13173 | Msa1346080:CDS |
CTTCAGCACCGAATTGGTCG+AGG | 0.602330 | tig0008142:+13017 | Msa1346080:CDS |
GCTTGGAAGTCCTAATTACA+TGG | 0.604254 | tig0008142:+13705 | Msa1346080:CDS |
ATCATTATGAAATTGTATGA+CGG | 0.604681 | tig0008142:+13346 | Msa1346080:CDS |
TGTTGACTGGTAGTCAACCT+TGG | 0.606529 | tig0008142:+13812 | Msa1346080:CDS |
ACCGTTGTTGAAATGTTGAC+TGG | 0.606786 | tig0008142:+13799 | Msa1346080:CDS |
CCTGAAGTTGATCCTTTGAG+AGG | 0.610469 | tig0008142:-14811 | Msa1346080:intergenic |
GTCCCAGACGGAACTGTCGT+TGG | 0.613432 | tig0008142:+14876 | Msa1346080:CDS |
TCATTTGAAACGGATTCATG+GGG | 0.622874 | tig0008142:+13766 | Msa1346080:CDS |
AAGTTGGCTAGACTAAGAGA+TGG | 0.628842 | tig0008142:+13382 | Msa1346080:CDS |
ATCCTTTGAGAGGAACCACT+CGG | 0.632608 | tig0008142:-14801 | Msa1346080:intergenic |
TATTCTCAATGGGAGAAGGA+AGG | 0.642358 | tig0008142:-13906 | Msa1346080:intergenic |
CAATGGAAACCAGAGGTCAG+AGG | 0.644185 | tig0008142:+13736 | Msa1346080:CDS |
GAGGGATGAAGTGCAACACA+AGG | 0.648511 | tig0008142:-12259 | Msa1346080:intergenic |
TCAAAGGATCAACTTCAGGT+GGG | 0.652726 | tig0008142:+14798 | Msa1346080:CDS |
GAAAAGCTGCATATCCCAAG+TGG | 0.662621 | tig0008142:+13883 | Msa1346080:CDS |
ACCAGTCAACATTTCAACAA+CGG | 0.664981 | tig0008142:-13800 | Msa1346080:intergenic |
GTTTGGCCGAGAGTAATACT+GGG | 0.677161 | tig0008142:+12215 | Msa1346080:five_prime_UTR |
TCTTTCGGGATTGTAAACAT+GGG | 0.678318 | tig0008142:+12339 | Msa1346080:five_prime_UTR |
AATGAACTGGCTAATGATGG+AGG | 0.681313 | tig0008142:+14702 | Msa1346080:CDS |
CAAAACATGAATGTCCCAGA+CGG | 0.682309 | tig0008142:+14864 | Msa1346080:CDS |
GTAAACATGGGTATCAATGG+CGG | 0.686930 | tig0008142:+12351 | Msa1346080:five_prime_UTR |
TTAGCTCAGATATTGCTCAG+AGG | 0.694542 | tig0008142:+13683 | Msa1346080:CDS |
GAACTGGCTAATGATGGAGG+AGG | 0.699870 | tig0008142:+14705 | Msa1346080:CDS |
TCCAGAACAATGGAAACCAG+AGG | 0.702393 | tig0008142:+13729 | Msa1346080:CDS |
CATACTCAAAACATGCACCA+AGG | 0.704149 | tig0008142:-13930 | Msa1346080:intergenic |
TTATAGGGTCATGAATACCG+TGG | 0.720576 | tig0008142:-14958 | Msa1346080:intergenic |
CCAACAGGACATCCATACCA+AGG | 0.725485 | tig0008142:-13829 | Msa1346080:intergenic |
GATAGTGTAGAAACATCACA+TGG | 0.731382 | tig0008142:-12291 | Msa1346080:intergenic |
CAACACAAGGACTTCCCAGG+AGG | 0.733345 | tig0008142:-12246 | Msa1346080:intergenic |
GCAGCACTGACTACACCGAG+TGG | 0.764598 | tig0008142:+14769 | Msa1346080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAAAAATTCTTTTTTTGA+GGG | + | tig0008142:11998-12017 | Msa1346080:five_prime_UTR | 10.0% |
!! | AAAAATACATAATAAAGAAA+AGG | - | tig0008142:12715-12734 | Msa1346080:intergenic | 10.0% |
!! | ATAAATAGATATTAACTAAA+AGG | - | tig0008142:14606-14625 | Msa1346080:intergenic | 10.0% |
!! | TTCAAAATAATGAAAAACAT+TGG | - | tig0008142:11751-11770 | Msa1346080:intergenic | 15.0% |
!!! | CTTAAAAAATTCTTTTTTTG+AGG | + | tig0008142:11997-12016 | Msa1346080:five_prime_UTR | 15.0% |
!!! | TAAAAAATTCTTTTTTTGAG+GGG | + | tig0008142:11999-12018 | Msa1346080:five_prime_UTR | 15.0% |
!!! | ACTATCTTTTTATTTAAAGA+AGG | + | tig0008142:12308-12327 | Msa1346080:five_prime_UTR | 15.0% |
!!! | CTATCTTTTTATTTAAAGAA+GGG | + | tig0008142:12309-12328 | Msa1346080:five_prime_UTR | 15.0% |
!!! | TATCTTTTTATTTAAAGAAG+GGG | + | tig0008142:12310-12329 | Msa1346080:five_prime_UTR | 15.0% |
!! | AAAAAATAAAATGCAAACAA+AGG | - | tig0008142:12378-12397 | Msa1346080:intergenic | 15.0% |
!!! | TTCTTTATTATGTATTTTTG+TGG | + | tig0008142:12716-12735 | Msa1346080:five_prime_UTR | 15.0% |
!! | ACATGTTAAGAATTTAAAAA+TGG | + | tig0008142:14449-14468 | Msa1346080:intron | 15.0% |
!! | TCTTTGATAAAAATGAATGA+TGG | + | tig0008142:11960-11979 | Msa1346080:five_prime_UTR | 20.0% |
!! | CTTTGATAAAAATGAATGAT+GGG | + | tig0008142:11961-11980 | Msa1346080:five_prime_UTR | 20.0% |
!!! | ATCTTTTTATTTAAAGAAGG+GGG | + | tig0008142:12311-12330 | Msa1346080:five_prime_UTR | 20.0% |
!!! | TTCTTTTGATTATGAGATTT+TGG | + | tig0008142:12914-12933 | Msa1346080:CDS | 20.0% |
!! | AATTTCAATGTTAAATGGAA+GGG | + | tig0008142:13223-13242 | Msa1346080:CDS | 20.0% |
!! | ATCATTATGAAATTGTATGA+CGG | + | tig0008142:13346-13365 | Msa1346080:CDS | 20.0% |
!!! | ATCTTTAACTTATATAGCAT+AGG | + | tig0008142:13459-13478 | Msa1346080:intron | 20.0% |
!!! | TCTTTAACTTATATAGCATA+GGG | + | tig0008142:13460-13479 | Msa1346080:intron | 20.0% |
!! | ATGCTAAATTAAACAAGAAT+CGG | - | tig0008142:14054-14073 | Msa1346080:intergenic | 20.0% |
!!! | CAAAGATAGAAATATTTTGT+TGG | - | tig0008142:14543-14562 | Msa1346080:intergenic | 20.0% |
!!! | CAACAAAATATTTCTATCTT+TGG | + | tig0008142:14541-14560 | Msa1346080:intron | 20.0% |
! | AAACTCTCCTTTCTTAAAAT+TGG | + | tig0008142:11548-11567 | Msa1346080:five_prime_UTR | 25.0% |
!!! | TAGGAATCCAATTTTAAGAA+AGG | - | tig0008142:11558-11577 | Msa1346080:intergenic | 25.0% |
!!! | TAAAGAAACAACCTTTGTTT+TGG | - | tig0008142:11616-11635 | Msa1346080:intergenic | 25.0% |
!!! | ATTTTTTAAGCAATTGAGAG+AGG | - | tig0008142:11987-12006 | Msa1346080:intergenic | 25.0% |
! | GTGTTTATTTAGGCATTAAA+GGG | + | tig0008142:12021-12040 | Msa1346080:five_prime_UTR | 25.0% |
! | TTTACTTGATATCACTTCAT+AGG | + | tig0008142:12435-12454 | Msa1346080:five_prime_UTR | 25.0% |
!!! | GCTATTGTAGTTTTGATATA+TGG | + | tig0008142:12462-12481 | Msa1346080:five_prime_UTR | 25.0% |
! | GTTGAGTGTTAAGTTTATTT+GGG | + | tig0008142:12484-12503 | Msa1346080:five_prime_UTR | 25.0% |
! | TTGAGTGTTAAGTTTATTTG+GGG | + | tig0008142:12485-12504 | Msa1346080:five_prime_UTR | 25.0% |
! | GTATTTACATATTTATTCCG+AGG | + | tig0008142:12553-12572 | Msa1346080:five_prime_UTR | 25.0% |
!! | ATATAACATTTTTCTTGCCT+CGG | - | tig0008142:12573-12592 | Msa1346080:intergenic | 25.0% |
! | TAAGTCAATGAAGATGTATT+TGG | + | tig0008142:12640-12659 | Msa1346080:five_prime_UTR | 25.0% |
! | CATGGAATTTCAATGTTAAA+TGG | + | tig0008142:13218-13237 | Msa1346080:CDS | 25.0% |
! | GAATTTCAATGTTAAATGGA+AGG | + | tig0008142:13222-13241 | Msa1346080:CDS | 25.0% |
! | GTGCATTTATTTCAATGTAT+AGG | + | tig0008142:13259-13278 | Msa1346080:intron | 25.0% |
! | AAAATTACTGGTCAATACTA+AGG | + | tig0008142:13483-13502 | Msa1346080:intron | 25.0% |
! | GGCATCAGAAAAAAAAAAAA+TGG | - | tig0008142:14033-14052 | Msa1346080:intergenic | 25.0% |
! | TTTCAATTATCACTTCACAT+TGG | + | tig0008142:14085-14104 | Msa1346080:intron | 25.0% |
!!! | CTTATTGATTTAGTTCTTTC+AGG | - | tig0008142:14359-14378 | Msa1346080:intergenic | 25.0% |
!!! | CATGGTTATCTTTTTAGTTA+GGG | + | tig0008142:14401-14420 | Msa1346080:intron | 25.0% |
! | ATGAAAGTAATTCCAAAATC+AGG | + | tig0008142:14747-14766 | Msa1346080:CDS | 25.0% |
! | TCGATGTATGAATTCTTATA+GGG | - | tig0008142:14959-14978 | Msa1346080:intergenic | 25.0% |
!!! | TTGTTTTGGAACAATCGAAA+TGG | - | tig0008142:11602-11621 | Msa1346080:intergenic | 30.0% |
TTTCGATTGTTCCAAAACAA+AGG | + | tig0008142:11602-11621 | Msa1346080:five_prime_UTR | 30.0% | |
!!! | TTTTTGAGGGGTGTTTATTT+AGG | + | tig0008142:12011-12030 | Msa1346080:five_prime_UTR | 30.0% |
GGTGTTTATTTAGGCATTAA+AGG | + | tig0008142:12020-12039 | Msa1346080:five_prime_UTR | 30.0% | |
ATTAAAGGGTAGCATCATAT+AGG | + | tig0008142:12035-12054 | Msa1346080:five_prime_UTR | 30.0% | |
! | ATCATATAGGATTTGAGTTC+AGG | + | tig0008142:12048-12067 | Msa1346080:five_prime_UTR | 30.0% |
! | GTATTTGTTACTTCTTAGAG+TGG | + | tig0008142:12106-12125 | Msa1346080:five_prime_UTR | 30.0% |
AAACATCACATGGCAAAAAA+TGG | - | tig0008142:12284-12303 | Msa1346080:intergenic | 30.0% | |
ATTGTAAACATGGGTATCAA+TGG | + | tig0008142:12348-12367 | Msa1346080:five_prime_UTR | 30.0% | |
GGTTGAGTGTTAAGTTTATT+TGG | + | tig0008142:12483-12502 | Msa1346080:five_prime_UTR | 30.0% | |
ACGTTATTAACATTGAGCTT+AGG | - | tig0008142:12788-12807 | Msa1346080:intergenic | 30.0% | |
CAGAAAATTTCAAAGATCAC+AGG | - | tig0008142:12823-12842 | Msa1346080:intergenic | 30.0% | |
AGTATTACAACCTTAGATTC+AGG | + | tig0008142:12855-12874 | Msa1346080:CDS | 30.0% | |
TTAAATGGAAGGGTTAGATT+TGG | + | tig0008142:13233-13252 | Msa1346080:intron | 30.0% | |
TAGCTTGATAGAAGTCAAAA+GGG | - | tig0008142:13298-13317 | Msa1346080:intergenic | 30.0% | |
! | TTAGCTTGATAGAAGTCAAA+AGG | - | tig0008142:13299-13318 | Msa1346080:intergenic | 30.0% |
AAATTGTATGACGGTTCAAT+TGG | + | tig0008142:13355-13374 | Msa1346080:CDS | 30.0% | |
TATAGCATAGGGAAAATTAC+TGG | + | tig0008142:13471-13490 | Msa1346080:intron | 30.0% | |
GAAGAACATTACATGGTTTA+AGG | - | tig0008142:13594-13613 | Msa1346080:intergenic | 30.0% | |
TCATTGAGAAGAACATTACA+TGG | - | tig0008142:13601-13620 | Msa1346080:intergenic | 30.0% | |
AATCCGTTTCAAATGACATA+GGG | - | tig0008142:13762-13781 | Msa1346080:intergenic | 30.0% | |
!! | CATGTTTTGAGTATGATTTG+AGG | + | tig0008142:13938-13957 | Msa1346080:CDS | 30.0% |
TTATGATCATGACCGATTAT+TGG | + | tig0008142:14169-14188 | Msa1346080:intron | 30.0% | |
ATTCCTGTGATGTATTATCT+TGG | + | tig0008142:14287-14306 | Msa1346080:intron | 30.0% | |
TTCCTGTGATGTATTATCTT+GGG | + | tig0008142:14288-14307 | Msa1346080:intron | 30.0% | |
!!! | GCATGGTTATCTTTTTAGTT+AGG | + | tig0008142:14400-14419 | Msa1346080:intron | 30.0% |
!!! | TTTTGAGATTTGCATGAGTT+GGG | - | tig0008142:14849-14868 | Msa1346080:intergenic | 30.0% |
! | ATTATGGATTTGTTCTAGTG+AGG | + | tig0008142:14916-14935 | Msa1346080:CDS | 30.0% |
! | TTATGGATTTGTTCTAGTGA+GGG | + | tig0008142:14917-14936 | Msa1346080:CDS | 30.0% |
GTCGATGTATGAATTCTTAT+AGG | - | tig0008142:14960-14979 | Msa1346080:intergenic | 30.0% | |
TCTTGGAGAAACAAAGAACT+AGG | - | tig0008142:11577-11596 | Msa1346080:intergenic | 35.0% | |
GAACAATCGAAATGGAATCT+TGG | - | tig0008142:11594-11613 | Msa1346080:intergenic | 35.0% | |
!! | GTATCTGTTGACTTTCTTGT+TGG | + | tig0008142:11903-11922 | Msa1346080:five_prime_UTR | 35.0% |
ATCACATGGCAAAAAATGGA+GGG | - | tig0008142:12280-12299 | Msa1346080:intergenic | 35.0% | |
GATAGTGTAGAAACATCACA+TGG | - | tig0008142:12294-12313 | Msa1346080:intergenic | 35.0% | |
TCTTTCGGGATTGTAAACAT+GGG | + | tig0008142:12339-12358 | Msa1346080:five_prime_UTR | 35.0% | |
AGTGTTAAGTTTATTTGGGG+TGG | + | tig0008142:12488-12507 | Msa1346080:five_prime_UTR | 35.0% | |
TCTAGACATTCCTGAATCTA+AGG | - | tig0008142:12868-12887 | Msa1346080:intergenic | 35.0% | |
GATGTTACATCCAATCAAAG+AGG | + | tig0008142:13118-13137 | Msa1346080:CDS | 35.0% | |
TTCACATGATCCTCTTTGAT+TGG | - | tig0008142:13131-13150 | Msa1346080:intergenic | 35.0% | |
! | TCTCATTACCTGATGTTTTG+AGG | + | tig0008142:13410-13429 | Msa1346080:CDS | 35.0% |
! | ATGGTTTAAGGTTGAGAACA+AGG | - | tig0008142:13582-13601 | Msa1346080:intergenic | 35.0% |
GAATCCGTTTCAAATGACAT+AGG | - | tig0008142:13763-13782 | Msa1346080:intergenic | 35.0% | |
! | TGTCATTTGAAACGGATTCA+TGG | + | tig0008142:13764-13783 | Msa1346080:CDS | 35.0% |
! | GTCATTTGAAACGGATTCAT+GGG | + | tig0008142:13765-13784 | Msa1346080:CDS | 35.0% |
! | TCATTTGAAACGGATTCATG+GGG | + | tig0008142:13766-13785 | Msa1346080:CDS | 35.0% |
ACCAGTCAACATTTCAACAA+CGG | - | tig0008142:13803-13822 | Msa1346080:intergenic | 35.0% | |
! | TGTCCTGTTGGTGAAATATA+CGG | + | tig0008142:13841-13860 | Msa1346080:CDS | 35.0% |
ATATTCTGCGCGTCTTTAAA+AGG | + | tig0008142:13980-13999 | Msa1346080:CDS | 35.0% | |
TCCTGTGAATATTCCAAGAT+TGG | + | tig0008142:14206-14225 | Msa1346080:intron | 35.0% | |
CCTGTGAATATTCCAAGATT+GGG | + | tig0008142:14207-14226 | Msa1346080:intron | 35.0% | |
TGAATATTCCAAGATTGGGT+AGG | + | tig0008142:14211-14230 | Msa1346080:intron | 35.0% | |
AGGAATACAGCTAATCTAGA+AGG | - | tig0008142:14273-14292 | Msa1346080:intergenic | 35.0% | |
TTCCCAAGATAATACATCAC+AGG | - | tig0008142:14293-14312 | Msa1346080:intergenic | 35.0% | |
!!! | CTTGGGAAGTGTTTACATTT+TGG | + | tig0008142:14305-14324 | Msa1346080:intron | 35.0% |
ATTCTTAACATGTGCCATGA+GGG | - | tig0008142:14442-14461 | Msa1346080:intergenic | 35.0% | |
AATTCTTAACATGTGCCATG+AGG | - | tig0008142:14443-14462 | Msa1346080:intergenic | 35.0% | |
!! | CTTCTTAACTTGTGCCTTAA+GGG | + | tig0008142:14564-14583 | Msa1346080:intron | 35.0% |
AATGTTATCTTGTGCCCTTA+AGG | - | tig0008142:14581-14600 | Msa1346080:intergenic | 35.0% | |
!!! | GTTTTGAGATTTGCATGAGT+TGG | - | tig0008142:14850-14869 | Msa1346080:intergenic | 35.0% |
TTAGAACGTACTGCAGATTA+TGG | + | tig0008142:14900-14919 | Msa1346080:CDS | 35.0% | |
!! | TCTGTTGACTTTCTTGTTGG+TGG | + | tig0008142:11906-11925 | Msa1346080:five_prime_UTR | 40.0% |
!! | TTTCTTGTTGGTGGTTGATG+AGG | + | tig0008142:11915-11934 | Msa1346080:five_prime_UTR | 40.0% |
!! | TTCTTGTTGGTGGTTGATGA+GGG | + | tig0008142:11916-11935 | Msa1346080:five_prime_UTR | 40.0% |
TTGATGAGGGAACAAGTGAT+TGG | + | tig0008142:11929-11948 | Msa1346080:five_prime_UTR | 40.0% | |
AATCTGCAGTTAAGCGTGTT+TGG | + | tig0008142:12198-12217 | Msa1346080:five_prime_UTR | 40.0% | |
CATCACATGGCAAAAAATGG+AGG | - | tig0008142:12281-12300 | Msa1346080:intergenic | 40.0% | |
AAGAAGGGGGAAATGTCTTT+CGG | + | tig0008142:12324-12343 | Msa1346080:five_prime_UTR | 40.0% | |
GTCTTTCGGGATTGTAAACA+TGG | + | tig0008142:12338-12357 | Msa1346080:five_prime_UTR | 40.0% | |
GTAAACATGGGTATCAATGG+CGG | + | tig0008142:12351-12370 | Msa1346080:five_prime_UTR | 40.0% | |
! | TTGTTGTTGCTCAGACAACA+AGG | + | tig0008142:12664-12683 | Msa1346080:five_prime_UTR | 40.0% |
AGGAATGTCTAGAGAAGTCA+TGG | + | tig0008142:12875-12894 | Msa1346080:CDS | 40.0% | |
! | AAAGGTTCAGGTTCAATCCA+TGG | - | tig0008142:12993-13012 | Msa1346080:intergenic | 40.0% |
TGCTGAAGTTTCAAAGGTTC+AGG | - | tig0008142:13005-13024 | Msa1346080:intergenic | 40.0% | |
!! | ATTCGGTGCTGAAGTTTCAA+AGG | - | tig0008142:13011-13030 | Msa1346080:intergenic | 40.0% |
! | TTGAAACTTCAGCACCGAAT+TGG | + | tig0008142:13011-13030 | Msa1346080:CDS | 40.0% |
ACATCTTAGCAGCAACTTCA+TGG | - | tig0008142:13103-13122 | Msa1346080:intergenic | 40.0% | |
! | GAATTATGCTTGAAGTGCCA+AGG | + | tig0008142:13173-13192 | Msa1346080:CDS | 40.0% |
AGCAAACACTAGAAACTCCT+TGG | - | tig0008142:13193-13212 | Msa1346080:intergenic | 40.0% | |
!! | AAGGAGTTTCTAGTGTTTGC+TGG | + | tig0008142:13192-13211 | Msa1346080:CDS | 40.0% |
! | TCTAGTGTTTGCTGGTTACA+TGG | + | tig0008142:13200-13219 | Msa1346080:CDS | 40.0% |
AAGTTGGCTAGACTAAGAGA+TGG | + | tig0008142:13382-13401 | Msa1346080:CDS | 40.0% | |
ACACATCACCTCAAAACATC+AGG | - | tig0008142:13421-13440 | Msa1346080:intergenic | 40.0% | |
GGTCAATACTAAGGATGTGT+TGG | + | tig0008142:13492-13511 | Msa1346080:intron | 40.0% | |
! | AAGGATGTGTTGGTCGTTAA+TGG | + | tig0008142:13502-13521 | Msa1346080:intron | 40.0% |
!! | ATTCTAGAGCTTCACGCTAA+AGG | + | tig0008142:13553-13572 | Msa1346080:CDS | 40.0% |
!! | TTCTAGAGCTTCACGCTAAA+GGG | + | tig0008142:13554-13573 | Msa1346080:CDS | 40.0% |
! | TGACAACGATCAAGCGATTT+TGG | + | tig0008142:13618-13637 | Msa1346080:CDS | 40.0% |
! | GACAACGATCAAGCGATTTT+GGG | + | tig0008142:13619-13638 | Msa1346080:CDS | 40.0% |
! | GGTATTCCCAATCTTTTGCT+TGG | + | tig0008142:13649-13668 | Msa1346080:CDS | 40.0% |
GAAGAGCCAAGCAAAAGATT+GGG | - | tig0008142:13658-13677 | Msa1346080:intergenic | 40.0% | |
TGAAGAGCCAAGCAAAAGAT+TGG | - | tig0008142:13659-13678 | Msa1346080:intergenic | 40.0% | |
TTAGCTCAGATATTGCTCAG+AGG | + | tig0008142:13683-13702 | Msa1346080:CDS | 40.0% | |
GCTTGGAAGTCCTAATTACA+TGG | + | tig0008142:13705-13724 | Msa1346080:CDS | 40.0% | |
!! | TGTTCTGGAGCCATGTAATT+AGG | - | tig0008142:13718-13737 | Msa1346080:intergenic | 40.0% |
ATTACATGGCTCCAGAACAA+TGG | + | tig0008142:13719-13738 | Msa1346080:CDS | 40.0% | |
! | AGGCCCTATGTCATTTGAAA+CGG | + | tig0008142:13756-13775 | Msa1346080:CDS | 40.0% |
ACCGTTGTTGAAATGTTGAC+TGG | + | tig0008142:13799-13818 | Msa1346080:CDS | 40.0% | |
GATCCGTATATTTCACCAAC+AGG | - | tig0008142:13847-13866 | Msa1346080:intergenic | 40.0% | |
TATTCTCAATGGGAGAAGGA+AGG | - | tig0008142:13909-13928 | Msa1346080:intergenic | 40.0% | |
AGGATATTCTCAATGGGAGA+AGG | - | tig0008142:13913-13932 | Msa1346080:intergenic | 40.0% | |
TCTCCCATTGAGAATATCCT+TGG | + | tig0008142:13913-13932 | Msa1346080:CDS | 40.0% | |
GCACCAAGGATATTCTCAAT+GGG | - | tig0008142:13919-13938 | Msa1346080:intergenic | 40.0% | |
TGCACCAAGGATATTCTCAA+TGG | - | tig0008142:13920-13939 | Msa1346080:intergenic | 40.0% | |
CATACTCAAAACATGCACCA+AGG | - | tig0008142:13933-13952 | Msa1346080:intergenic | 40.0% | |
TTTGAGGAATCGACCTTCAA+TGG | + | tig0008142:13954-13973 | Msa1346080:CDS | 40.0% | |
CGCAGAATATCTACCATTGA+AGG | - | tig0008142:13970-13989 | Msa1346080:intergenic | 40.0% | |
GGTACAGGTTCACCAATAAT+CGG | - | tig0008142:14184-14203 | Msa1346080:intergenic | 40.0% | |
AATATTCACAGGACAGGTAC+AGG | - | tig0008142:14199-14218 | Msa1346080:intergenic | 40.0% | |
TCTTGGAATATTCACAGGAC+AGG | - | tig0008142:14205-14224 | Msa1346080:intergenic | 40.0% | |
CCCAATCTTGGAATATTCAC+AGG | - | tig0008142:14210-14229 | Msa1346080:intergenic | 40.0% | |
TTCAGGTACAGACATTATCC+TGG | - | tig0008142:14342-14361 | Msa1346080:intergenic | 40.0% | |
!! | GCTTCTTAACTTGTGCCTTA+AGG | + | tig0008142:14563-14582 | Msa1346080:intron | 40.0% |
ATTCATTCTGCCTATGTTGC+AGG | + | tig0008142:14673-14692 | Msa1346080:intron | 40.0% | |
CTGAATGAACTGGCTAATGA+TGG | + | tig0008142:14699-14718 | Msa1346080:CDS | 40.0% | |
AATGAACTGGCTAATGATGG+AGG | + | tig0008142:14702-14721 | Msa1346080:CDS | 40.0% | |
TCAAAGGATCAACTTCAGGT+GGG | + | tig0008142:14798-14817 | Msa1346080:CDS | 40.0% | |
CAAAACATGAATGTCCCAGA+CGG | + | tig0008142:14864-14883 | Msa1346080:CDS | 40.0% | |
TTATAGGGTCATGAATACCG+TGG | - | tig0008142:14944-14963 | Msa1346080:intergenic | 40.0% | |
CGCTTAACTGCAGATTCTGA+TGG | - | tig0008142:12194-12213 | Msa1346080:intergenic | 45.0% | |
TGTTTGGCCGAGAGTAATAC+TGG | + | tig0008142:12214-12233 | Msa1346080:five_prime_UTR | 45.0% | |
GTTTGGCCGAGAGTAATACT+GGG | + | tig0008142:12215-12234 | Msa1346080:five_prime_UTR | 45.0% | |
ACCCATCCCAGTATTACTCT+CGG | - | tig0008142:12224-12243 | Msa1346080:intergenic | 45.0% | |
AGAAGGGGGAAATGTCTTTC+GGG | + | tig0008142:12325-12344 | Msa1346080:five_prime_UTR | 45.0% | |
! | TCGGAACAGCAGCAGTTTTA+GGG | - | tig0008142:12956-12975 | Msa1346080:intergenic | 45.0% |
GCAAGCCAAACATCACCAAA+GGG | - | tig0008142:13044-13063 | Msa1346080:intergenic | 45.0% | |
TGCAAGCCAAACATCACCAA+AGG | - | tig0008142:13045-13064 | Msa1346080:intergenic | 45.0% | |
! | CGGTTCAATTGGTGACAAGT+TGG | + | tig0008142:13366-13385 | Msa1346080:CDS | 45.0% |
TGGCTAGACTAAGAGATGGA+TGG | + | tig0008142:13386-13405 | Msa1346080:CDS | 45.0% | |
! | ATGTGTTGGTCGTTAATGGC+AGG | + | tig0008142:13506-13525 | Msa1346080:intron | 45.0% |
TTGGTCGTTAATGGCAGGTA+CGG | + | tig0008142:13511-13530 | Msa1346080:intron | 45.0% | |
TCAGATATTGCTCAGAGGCT+TGG | + | tig0008142:13688-13707 | Msa1346080:CDS | 45.0% | |
TCCAGAACAATGGAAACCAG+AGG | + | tig0008142:13729-13748 | Msa1346080:CDS | 45.0% | |
! | ACCTCTGGTTTCCATTGTTC+TGG | - | tig0008142:13733-13752 | Msa1346080:intergenic | 45.0% |
! | GAAACGGATTCATGGGGATT+CGG | + | tig0008142:13772-13791 | Msa1346080:CDS | 45.0% |
! | TGTTGACTGGTAGTCAACCT+TGG | + | tig0008142:13812-13831 | Msa1346080:CDS | 45.0% |
ACTGGTAGTCAACCTTGGTA+TGG | + | tig0008142:13817-13836 | Msa1346080:CDS | 45.0% | |
GAAAAGCTGCATATCCCAAG+TGG | + | tig0008142:13883-13902 | Msa1346080:CDS | 45.0% | |
ACAACAGACCTACCCAATCT+TGG | - | tig0008142:14222-14241 | Msa1346080:intergenic | 45.0% | |
AGATTGGGTAGGTCTGTTGT+AGG | + | tig0008142:14222-14241 | Msa1346080:intron | 45.0% | |
TGTTGTAGGACTAGAGCTCA+AGG | + | tig0008142:14236-14255 | Msa1346080:intron | 45.0% | |
!!! | ATTTTGGCTTCCTCTGATCC+AGG | + | tig0008142:14321-14340 | Msa1346080:intron | 45.0% |
CAGACATTATCCTGGATCAG+AGG | - | tig0008142:14334-14353 | Msa1346080:intergenic | 45.0% | |
CATTCAGTGACCTGCAACAT+AGG | - | tig0008142:14686-14705 | Msa1346080:intergenic | 45.0% | |
TTGCAGGTCACTGAATGAAC+TGG | + | tig0008142:14689-14708 | Msa1346080:intron | 45.0% | |
! | TAGTCAGTGCTGCCTGATTT+TGG | - | tig0008142:14762-14781 | Msa1346080:intergenic | 45.0% |
! | ATCCTTTGAGAGGAACCACT+CGG | - | tig0008142:14787-14806 | Msa1346080:intergenic | 45.0% |
! | CCTGAAGTTGATCCTTTGAG+AGG | - | tig0008142:14797-14816 | Msa1346080:intergenic | 45.0% |
CCTCTCAAAGGATCAACTTC+AGG | + | tig0008142:14794-14813 | Msa1346080:CDS | 45.0% | |
CTCAAAGGATCAACTTCAGG+TGG | + | tig0008142:14797-14816 | Msa1346080:CDS | 45.0% | |
! | TGAGATTTGCATGAGTTGGG+AGG | - | tig0008142:14846-14865 | Msa1346080:intergenic | 45.0% |
TTTGTTCTAGTGAGGGTCCA+CGG | + | tig0008142:14924-14943 | Msa1346080:CDS | 45.0% | |
GCCGAGAGTAATACTGGGAT+GGG | + | tig0008142:12220-12239 | Msa1346080:five_prime_UTR | 50.0% | |
GAGGGATGAAGTGCAACACA+AGG | - | tig0008142:12262-12281 | Msa1346080:intergenic | 50.0% | |
!!! | AGCAGCAGTTTTAGGGACGT+CGG | - | tig0008142:12949-12968 | Msa1346080:intergenic | 50.0% |
! | GTCGGAACAGCAGCAGTTTT+AGG | - | tig0008142:12957-12976 | Msa1346080:intergenic | 50.0% |
AATCCATGGACTTGCGCGAT+TGG | - | tig0008142:12979-12998 | Msa1346080:intergenic | 50.0% | |
CAAAGGGTCCTCGACCAATT+CGG | - | tig0008142:13028-13047 | Msa1346080:intergenic | 50.0% | |
!! | GAGGACCCTTTGGTGATGTT+TGG | + | tig0008142:13036-13055 | Msa1346080:CDS | 50.0% |
TGGTCGTTAATGGCAGGTAC+GGG | + | tig0008142:13512-13531 | Msa1346080:intron | 50.0% | |
!! | CAAGCGATTTTGGGAGACGT+TGG | + | tig0008142:13628-13647 | Msa1346080:CDS | 50.0% |
CAATGGAAACCAGAGGTCAG+AGG | + | tig0008142:13736-13755 | Msa1346080:CDS | 50.0% | |
CCAACAGGACATCCATACCA+AGG | - | tig0008142:13832-13851 | Msa1346080:intergenic | 50.0% | |
CCTTGGTATGGATGTCCTGT+TGG | + | tig0008142:13829-13848 | Msa1346080:CDS | 50.0% | |
AAGCTGTTTGTGCACGAGCA+TGG | + | tig0008142:14383-14402 | Msa1346080:intron | 50.0% | |
AGTGTTAACGTGTGCCCTCA+TGG | + | tig0008142:14425-14444 | Msa1346080:intron | 50.0% | |
! | GAACTGGCTAATGATGGAGG+AGG | + | tig0008142:14705-14724 | Msa1346080:CDS | 50.0% |
! | TGGCTAATGATGGAGGAGGA+TGG | + | tig0008142:14709-14728 | Msa1346080:CDS | 50.0% |
GGAGGAGGATGGAGATATCA+AGG | + | tig0008142:14720-14739 | Msa1346080:CDS | 50.0% | |
TCAACTTCAGGTGGGTGACA+TGG | + | tig0008142:14806-14825 | Msa1346080:CDS | 50.0% | |
AGTTGGGAGGCTTTCTGGAT+CGG | - | tig0008142:14833-14852 | Msa1346080:intergenic | 50.0% | |
GGCCGAGAGTAATACTGGGA+TGG | + | tig0008142:12219-12238 | Msa1346080:five_prime_UTR | 55.0% | |
CAACACAAGGACTTCCCAGG+AGG | - | tig0008142:12249-12268 | Msa1346080:intergenic | 55.0% | |
GTGCAACACAAGGACTTCCC+AGG | - | tig0008142:12252-12271 | Msa1346080:intergenic | 55.0% | |
CATGGACTTGCGCGATTGGT+CGG | - | tig0008142:12975-12994 | Msa1346080:intergenic | 55.0% | |
! | CTTCAGCACCGAATTGGTCG+AGG | + | tig0008142:13017-13036 | Msa1346080:CDS | 55.0% |
CGAATTGGTCGAGGACCCTT+TGG | + | tig0008142:13026-13045 | Msa1346080:CDS | 55.0% | |
! | TACGGGATCGATCTGGCTCA+AGG | + | tig0008142:13529-13548 | Msa1346080:CDS | 55.0% |
TGGGAGAAGGAAGGCCACTT+GGG | - | tig0008142:13900-13919 | Msa1346080:intergenic | 55.0% | |
ATGGGAGAAGGAAGGCCACT+TGG | - | tig0008142:13901-13920 | Msa1346080:intergenic | 55.0% | |
CACCGAGTGGTTCCTCTCAA+AGG | + | tig0008142:14782-14801 | Msa1346080:CDS | 55.0% | |
! | GCATGAGTTGGGAGGCTTTC+TGG | - | tig0008142:14838-14857 | Msa1346080:intergenic | 55.0% |
AGCCAACGACAGTTCCGTCT+GGG | - | tig0008142:14881-14900 | Msa1346080:intergenic | 55.0% | |
AAGCCAACGACAGTTCCGTC+TGG | - | tig0008142:14882-14901 | Msa1346080:intergenic | 55.0% | |
TACTGGGATGGGTGACCTCC+TGG | + | tig0008142:12231-12250 | Msa1346080:five_prime_UTR | 60.0% | |
ACTGGGATGGGTGACCTCCT+GGG | + | tig0008142:12232-12251 | Msa1346080:five_prime_UTR | 60.0% | |
CGACCAATCGCGCAAGTCCA+TGG | + | tig0008142:12973-12992 | Msa1346080:CDS | 60.0% | |
TGGCAGGTACGGGATCGATC+TGG | + | tig0008142:13522-13541 | Msa1346080:intron | 60.0% | |
GACATAGGGCCTCTGACCTC+TGG | - | tig0008142:13748-13767 | Msa1346080:intergenic | 60.0% | |
!! | GCAGCACTGACTACACCGAG+TGG | + | tig0008142:14769-14788 | Msa1346080:CDS | 60.0% |
GTCCCAGACGGAACTGTCGT+TGG | + | tig0008142:14876-14895 | Msa1346080:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0008142 | gene | 11547 | 14998 | 11547 | ID=Msa1346080;Name=Msa1346080 |
tig0008142 | mRNA | 11547 | 14998 | 11547 | ID=Msa1346080-mRNA-1;Parent=Msa1346080;Name=Msa1346080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1305|1|0.75|1|1|1|4|0|421 |
tig0008142 | exon | 11547 | 13244 | 11547 | ID=Msa1346080-mRNA-1:exon:5332;Parent=Msa1346080-mRNA-1 |
tig0008142 | exon | 13340 | 13431 | 13340 | ID=Msa1346080-mRNA-1:exon:5333;Parent=Msa1346080-mRNA-1 |
tig0008142 | exon | 13528 | 14001 | 13528 | ID=Msa1346080-mRNA-1:exon:5334;Parent=Msa1346080-mRNA-1 |
tig0008142 | exon | 14695 | 14998 | 14695 | ID=Msa1346080-mRNA-1:exon:5335;Parent=Msa1346080-mRNA-1 |
tig0008142 | five_prime_UTR | 11547 | 12851 | 11547 | ID=Msa1346080-mRNA-1:five_prime_utr;Parent=Msa1346080-mRNA-1 |
tig0008142 | CDS | 12852 | 13244 | 12852 | ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1 |
tig0008142 | CDS | 13340 | 13431 | 13340 | ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1 |
tig0008142 | CDS | 13528 | 14001 | 13528 | ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1 |
tig0008142 | CDS | 14695 | 14998 | 14695 | ID=Msa1346080-mRNA-1:cds;Parent=Msa1346080-mRNA-1 |
Gene Sequence |
Protein sequence |