Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725650 | AES96743.1 | 94.286 | 35 | 2 | 0 | 1 | 35 | 787 | 821 | 2.05e-12 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725650 | G7KF97 | 94.286 | 35 | 2 | 0 | 1 | 35 | 787 | 821 | 9.81e-13 | 73.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0725640 | Msa0725650 | 0.829944 | 3.877775e-55 | -8.615850e-47 |
| Msa0725650 | Msa0845730 | 0.807999 | 3.841145e-50 | -8.615850e-47 |
| Msa0725650 | Msa0845740 | 0.923525 | 2.366338e-89 | -8.615850e-47 |
| Msa0725650 | Msa0936430 | 0.803065 | 4.163377e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725650 | MtrunA17_Chr1g0155991 | 80.000 | 35 | 7 | 0 | 1 | 35 | 915 | 949 | 7.63e-13 | 63.9 |
| Msa0725650 | MtrunA17_Chr1g0155321 | 80.000 | 35 | 7 | 0 | 1 | 35 | 913 | 947 | 4.63e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAATTACTGAAATCTTT+AGG | 0.200561 | 5_1:+25367280 | None:intergenic |
| AGTATTTACCAGAGAAAATA+TGG | 0.209924 | 5_1:-25368681 | Msa0725650:CDS |
| CAGGCTTTAGCTTAGTTCTT+TGG | 0.233463 | 5_1:-25367893 | Msa0725650:CDS |
| AATAATTACTGAAATCTTTA+GGG | 0.272120 | 5_1:+25367281 | None:intergenic |
| TTCTCACATTCTTCAGATAA+AGG | 0.289924 | 5_1:+25367250 | None:intergenic |
| CAACCTTGCTTTGAAGCATC+TGG | 0.330999 | 5_1:-25368728 | Msa0725650:CDS |
| TTTACTCCGGAGCTCATTCT+TGG | 0.331949 | 5_1:+25367861 | None:intergenic |
| TCACCATGGTTCTCCCTCTC+TGG | 0.365790 | 5_1:+25367511 | None:intergenic |
| GCAAGGTTGAAGGGTTCATT+TGG | 0.379753 | 5_1:+25368742 | None:intergenic |
| ATCAAGATTTCACCATCATT+AGG | 0.411314 | 5_1:+25367547 | None:intergenic |
| TTACTCCGGAGCTCATTCTT+GGG | 0.465313 | 5_1:+25367862 | None:intergenic |
| ATTTCACCATCATTAGGATC+AGG | 0.488983 | 5_1:+25367553 | None:intergenic |
| ATGCTTCAAAGCAAGGTTGA+AGG | 0.504967 | 5_1:+25368732 | None:intergenic |
| AAAAGATCTTTCATTTACTC+CGG | 0.507556 | 5_1:+25367848 | None:intergenic |
| CCGGAGCTCATTCTTGGGAA+AGG | 0.512386 | 5_1:+25367867 | None:intergenic |
| CTCTGGTAAATACTCAAGCT+CGG | 0.532969 | 5_1:+25368690 | None:intergenic |
| GTATTTACCAGAGAAAATAT+GGG | 0.533584 | 5_1:-25368680 | Msa0725650:CDS |
| TATCCAGATGCTTCAAAGCA+AGG | 0.547330 | 5_1:+25368725 | None:intergenic |
| TGCTTCAAAGCAAGGTTGAA+GGG | 0.548519 | 5_1:+25368733 | None:intergenic |
| TTCTTCAGATAAAGGTTCAA+CGG | 0.577865 | 5_1:+25367258 | None:intergenic |
| CCTTTCCCAAGAATGAGCTC+CGG | 0.589503 | 5_1:-25367867 | Msa0725650:CDS |
| ACTCTACCTGATCCTAATGA+TGG | 0.592278 | 5_1:-25367559 | Msa0725650:CDS |
| TATCTGAAGAATGTGAGAAG+AGG | 0.621701 | 5_1:-25367246 | Msa0725650:CDS |
| TCATTATGCGAAGCCAGAGA+GGG | 0.639171 | 5_1:-25367524 | Msa0725650:CDS |
| TTCATTATGCGAAGCCAGAG+AGG | 0.662945 | 5_1:-25367525 | Msa0725650:CDS |
| TATTTACCAGAGAAAATATG+GGG | 0.676075 | 5_1:-25368679 | Msa0725650:CDS |
| AAGCCAGAGAGGGAGAACCA+TGG | 0.676428 | 5_1:-25367514 | Msa0725650:CDS |
| TAACTGATGATCTGTCACCA+TGG | 0.695466 | 5_1:+25367497 | None:intergenic |
| TTACCAGAGAAAATATGGGG+AGG | 0.706905 | 5_1:-25368676 | Msa0725650:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAAATGATATAAAAA+AGG | + | chr5_1:25367918-25367937 | None:intergenic | 10.0% |
| !! | AATATGAAATGATATAAAAA+AGG | + | chr5_1:25367918-25367937 | None:intergenic | 10.0% |
| !! | AATAATTACTGAAATCTTTA+GGG | + | chr5_1:25368707-25368726 | None:intergenic | 15.0% |
| !! | AATAATTACTGAAATCTTTA+GGG | + | chr5_1:25368707-25368726 | None:intergenic | 15.0% |
| !!! | TTTTGATTGTGTTTCTTTTA+GGG | - | chr5_1:25367670-25367689 | Msa0725650:intron | 20.0% |
| !!! | TTTTTCAAATTAAGATTGCT+AGG | + | chr5_1:25367875-25367894 | None:intergenic | 20.0% |
| !!! | TACTGTTATCTTTTTATTCA+TGG | + | chr5_1:25368621-25368640 | None:intergenic | 20.0% |
| !! | GAATAATTACTGAAATCTTT+AGG | + | chr5_1:25368708-25368727 | None:intergenic | 20.0% |
| !!! | TTTTGATTGTGTTTCTTTTA+GGG | - | chr5_1:25367670-25367689 | Msa0725650:intron | 20.0% |
| !!! | TTTTTCAAATTAAGATTGCT+AGG | + | chr5_1:25367875-25367894 | None:intergenic | 20.0% |
| !!! | TACTGTTATCTTTTTATTCA+TGG | + | chr5_1:25368621-25368640 | None:intergenic | 20.0% |
| !! | GAATAATTACTGAAATCTTT+AGG | + | chr5_1:25368708-25368727 | None:intergenic | 20.0% |
| ! | AGTATTTACCAGAGAAAATA+TGG | - | chr5_1:25367304-25367323 | Msa0725650:CDS | 25.0% |
| ! | GTATTTACCAGAGAAAATAT+GGG | - | chr5_1:25367305-25367324 | Msa0725650:CDS | 25.0% |
| ! | TATTTACCAGAGAAAATATG+GGG | - | chr5_1:25367306-25367325 | Msa0725650:CDS | 25.0% |
| ! | CTAAAAGAAACACAATCAAA+AGG | + | chr5_1:25367671-25367690 | None:intergenic | 25.0% |
| !!! | CTTTTGATTGTGTTTCTTTT+AGG | - | chr5_1:25367669-25367688 | Msa0725650:intron | 25.0% |
| ! | TTTCTTGTACAATGTTATAC+CGG | - | chr5_1:25367991-25368010 | Msa0725650:intron | 25.0% |
| ! | ATGAGAATCTGTTACAAATT+TGG | + | chr5_1:25368057-25368076 | None:intergenic | 25.0% |
| !! | TCATTATGAAATGATTTTGC+AGG | - | chr5_1:25368073-25368092 | Msa0725650:intron | 25.0% |
| ! | AAAAGATCTTTCATTTACTC+CGG | + | chr5_1:25368140-25368159 | None:intergenic | 25.0% |
| !! | GTAAATGAAAGATCTTTTAC+TGG | - | chr5_1:25368142-25368161 | Msa0725650:intron | 25.0% |
| !!! | TGAGTTCATTATCTTTTTCA+AGG | - | chr5_1:25368194-25368213 | Msa0725650:intron | 25.0% |
| !! | ATAGATGCAAGTCTTAATTT+TGG | - | chr5_1:25368343-25368362 | Msa0725650:intron | 25.0% |
| !! | AGTCTTAATTTTGGATGATA+TGG | - | chr5_1:25368352-25368371 | Msa0725650:intron | 25.0% |
| !! | GTCTTAATTTTGGATGATAT+GGG | - | chr5_1:25368353-25368372 | Msa0725650:intron | 25.0% |
| ! | AGTATTTACCAGAGAAAATA+TGG | - | chr5_1:25367304-25367323 | Msa0725650:CDS | 25.0% |
| ! | GTATTTACCAGAGAAAATAT+GGG | - | chr5_1:25367305-25367324 | Msa0725650:CDS | 25.0% |
| ! | TATTTACCAGAGAAAATATG+GGG | - | chr5_1:25367306-25367325 | Msa0725650:CDS | 25.0% |
| ! | CTAAAAGAAACACAATCAAA+AGG | + | chr5_1:25367671-25367690 | None:intergenic | 25.0% |
| !!! | CTTTTGATTGTGTTTCTTTT+AGG | - | chr5_1:25367669-25367688 | Msa0725650:intron | 25.0% |
| ! | TTTCTTGTACAATGTTATAC+CGG | - | chr5_1:25367991-25368010 | Msa0725650:intron | 25.0% |
| ! | ATGAGAATCTGTTACAAATT+TGG | + | chr5_1:25368057-25368076 | None:intergenic | 25.0% |
| !! | TCATTATGAAATGATTTTGC+AGG | - | chr5_1:25368073-25368092 | Msa0725650:intron | 25.0% |
| ! | AAAAGATCTTTCATTTACTC+CGG | + | chr5_1:25368140-25368159 | None:intergenic | 25.0% |
| !! | GTAAATGAAAGATCTTTTAC+TGG | - | chr5_1:25368142-25368161 | Msa0725650:intron | 25.0% |
| !!! | TGAGTTCATTATCTTTTTCA+AGG | - | chr5_1:25368194-25368213 | Msa0725650:intron | 25.0% |
| !! | ATAGATGCAAGTCTTAATTT+TGG | - | chr5_1:25368343-25368362 | Msa0725650:intron | 25.0% |
| !! | AGTCTTAATTTTGGATGATA+TGG | - | chr5_1:25368352-25368371 | Msa0725650:intron | 25.0% |
| !! | GTCTTAATTTTGGATGATAT+GGG | - | chr5_1:25368353-25368372 | Msa0725650:intron | 25.0% |
| TAGGAAATTAAAATGCTTGC+CGG | - | chr5_1:25367368-25367387 | Msa0725650:intron | 30.0% | |
| ! | CTTGACTAGTTGACTATTTA+TGG | - | chr5_1:25367549-25367568 | Msa0725650:CDS | 30.0% |
| GTTTAAGAGCAACAAACAAA+GGG | + | chr5_1:25367622-25367641 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGTTGCTCTTAAA+CGG | - | chr5_1:25367621-25367640 | Msa0725650:intron | 30.0% |
| ! | TTTGTTTGTTGCTCTTAAAC+GGG | - | chr5_1:25367622-25367641 | Msa0725650:intron | 30.0% |
| AAGAAACACAATCAAAAGGT+TGG | + | chr5_1:25367667-25367686 | None:intergenic | 30.0% | |
| CAAAACGATAGTTACTAAGT+AGG | + | chr5_1:25367763-25367782 | None:intergenic | 30.0% | |
| TTGTACAAGAAACAGACAAT+AGG | + | chr5_1:25367983-25368002 | None:intergenic | 30.0% | |
| GAACTCACTTATAAAAACTC+TGG | + | chr5_1:25368181-25368200 | None:intergenic | 30.0% | |
| !! | TTTGAATTAATTGACTCGCA+TGG | - | chr5_1:25368231-25368250 | Msa0725650:intron | 30.0% |
| !! | TCGCATGGTATTGATAAAAA+TGG | - | chr5_1:25368246-25368265 | Msa0725650:intron | 30.0% |
| ! | TTTTGGATGATATGGGTATT+AGG | - | chr5_1:25368360-25368379 | Msa0725650:intron | 30.0% |
| ATCAAGATTTCACCATCATT+AGG | + | chr5_1:25368441-25368460 | None:intergenic | 30.0% | |
| TTCTTCAGATAAAGGTTCAA+CGG | + | chr5_1:25368730-25368749 | None:intergenic | 30.0% | |
| TTCTCACATTCTTCAGATAA+AGG | + | chr5_1:25368738-25368757 | None:intergenic | 30.0% | |
| TAGGAAATTAAAATGCTTGC+CGG | - | chr5_1:25367368-25367387 | Msa0725650:intron | 30.0% | |
| ! | CTTGACTAGTTGACTATTTA+TGG | - | chr5_1:25367549-25367568 | Msa0725650:CDS | 30.0% |
| GTTTAAGAGCAACAAACAAA+GGG | + | chr5_1:25367622-25367641 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGTTGCTCTTAAA+CGG | - | chr5_1:25367621-25367640 | Msa0725650:intron | 30.0% |
| ! | TTTGTTTGTTGCTCTTAAAC+GGG | - | chr5_1:25367622-25367641 | Msa0725650:intron | 30.0% |
| AAGAAACACAATCAAAAGGT+TGG | + | chr5_1:25367667-25367686 | None:intergenic | 30.0% | |
| CAAAACGATAGTTACTAAGT+AGG | + | chr5_1:25367763-25367782 | None:intergenic | 30.0% | |
| TTGTACAAGAAACAGACAAT+AGG | + | chr5_1:25367983-25368002 | None:intergenic | 30.0% | |
| GAACTCACTTATAAAAACTC+TGG | + | chr5_1:25368181-25368200 | None:intergenic | 30.0% | |
| !! | TTTGAATTAATTGACTCGCA+TGG | - | chr5_1:25368231-25368250 | Msa0725650:intron | 30.0% |
| !! | TCGCATGGTATTGATAAAAA+TGG | - | chr5_1:25368246-25368265 | Msa0725650:intron | 30.0% |
| ! | TTTTGGATGATATGGGTATT+AGG | - | chr5_1:25368360-25368379 | Msa0725650:intron | 30.0% |
| ATCAAGATTTCACCATCATT+AGG | + | chr5_1:25368441-25368460 | None:intergenic | 30.0% | |
| TTCTTCAGATAAAGGTTCAA+CGG | + | chr5_1:25368730-25368749 | None:intergenic | 30.0% | |
| TTCTCACATTCTTCAGATAA+AGG | + | chr5_1:25368738-25368757 | None:intergenic | 30.0% | |
| TCTGCAATCACTTCAATCTA+TGG | - | chr5_1:25367332-25367351 | Msa0725650:intron | 35.0% | |
| CTATGGTGATTGTTGAATGT+AGG | - | chr5_1:25367349-25367368 | Msa0725650:intron | 35.0% | |
| AAATTAAAATGCTTGCCGGA+CGG | - | chr5_1:25367372-25367391 | Msa0725650:intron | 35.0% | |
| TTAATGAATCAAGTGCAGTG+AGG | + | chr5_1:25367407-25367426 | None:intergenic | 35.0% | |
| !! | AATGTGCAGTTCTGGAATAT+GGG | + | chr5_1:25367499-25367518 | None:intergenic | 35.0% |
| !! | AAATGTGCAGTTCTGGAATA+TGG | + | chr5_1:25367500-25367519 | None:intergenic | 35.0% |
| TCATTCTAAATGTGCAGTTC+TGG | + | chr5_1:25367507-25367526 | None:intergenic | 35.0% | |
| CGTTTAAGAGCAACAAACAA+AGG | + | chr5_1:25367623-25367642 | None:intergenic | 35.0% | |
| AACACAATCAAAAGGTTGGA+GGG | + | chr5_1:25367663-25367682 | None:intergenic | 35.0% | |
| AAACACAATCAAAAGGTTGG+AGG | + | chr5_1:25367664-25367683 | None:intergenic | 35.0% | |
| !!! | GATTGTGTTTCTTTTAGGGT+TGG | - | chr5_1:25367674-25367693 | Msa0725650:intron | 35.0% |
| !!! | TGTTTCTTTTAGGGTTGGTT+TGG | - | chr5_1:25367679-25367698 | Msa0725650:intron | 35.0% |
| GACTTGAAATCTAAGAAAGC+CGG | + | chr5_1:25368013-25368032 | None:intergenic | 35.0% | |
| ! | ATTTCAAGTCCTCAATTGAC+TGG | - | chr5_1:25368023-25368042 | Msa0725650:intron | 35.0% |
| GAATGAAAACCAGTCAATTG+AGG | + | chr5_1:25368035-25368054 | None:intergenic | 35.0% | |
| ATTTCACCATCATTAGGATC+AGG | + | chr5_1:25368435-25368454 | None:intergenic | 35.0% | |
| TATCTGAAGAATGTGAGAAG+AGG | - | chr5_1:25368739-25368758 | Msa0725650:CDS | 35.0% | |
| TCTGCAATCACTTCAATCTA+TGG | - | chr5_1:25367332-25367351 | Msa0725650:intron | 35.0% | |
| CTATGGTGATTGTTGAATGT+AGG | - | chr5_1:25367349-25367368 | Msa0725650:intron | 35.0% | |
| AAATTAAAATGCTTGCCGGA+CGG | - | chr5_1:25367372-25367391 | Msa0725650:intron | 35.0% | |
| TTAATGAATCAAGTGCAGTG+AGG | + | chr5_1:25367407-25367426 | None:intergenic | 35.0% | |
| !! | AATGTGCAGTTCTGGAATAT+GGG | + | chr5_1:25367499-25367518 | None:intergenic | 35.0% |
| !! | AAATGTGCAGTTCTGGAATA+TGG | + | chr5_1:25367500-25367519 | None:intergenic | 35.0% |
| TCATTCTAAATGTGCAGTTC+TGG | + | chr5_1:25367507-25367526 | None:intergenic | 35.0% | |
| CGTTTAAGAGCAACAAACAA+AGG | + | chr5_1:25367623-25367642 | None:intergenic | 35.0% | |
| AACACAATCAAAAGGTTGGA+GGG | + | chr5_1:25367663-25367682 | None:intergenic | 35.0% | |
| AAACACAATCAAAAGGTTGG+AGG | + | chr5_1:25367664-25367683 | None:intergenic | 35.0% | |
| !!! | GATTGTGTTTCTTTTAGGGT+TGG | - | chr5_1:25367674-25367693 | Msa0725650:intron | 35.0% |
| !!! | TGTTTCTTTTAGGGTTGGTT+TGG | - | chr5_1:25367679-25367698 | Msa0725650:intron | 35.0% |
| GACTTGAAATCTAAGAAAGC+CGG | + | chr5_1:25368013-25368032 | None:intergenic | 35.0% | |
| ! | ATTTCAAGTCCTCAATTGAC+TGG | - | chr5_1:25368023-25368042 | Msa0725650:intron | 35.0% |
| GAATGAAAACCAGTCAATTG+AGG | + | chr5_1:25368035-25368054 | None:intergenic | 35.0% | |
| ATTTCACCATCATTAGGATC+AGG | + | chr5_1:25368435-25368454 | None:intergenic | 35.0% | |
| TATCTGAAGAATGTGAGAAG+AGG | - | chr5_1:25368739-25368758 | Msa0725650:CDS | 35.0% | |
| TGCTTCAAAGCAAGGTTGAA+GGG | + | chr5_1:25367255-25367274 | None:intergenic | 40.0% | |
| ATGCTTCAAAGCAAGGTTGA+AGG | + | chr5_1:25367256-25367275 | None:intergenic | 40.0% | |
| TATCCAGATGCTTCAAAGCA+AGG | + | chr5_1:25367263-25367282 | None:intergenic | 40.0% | |
| CTCTGGTAAATACTCAAGCT+CGG | + | chr5_1:25367298-25367317 | None:intergenic | 40.0% | |
| TTACCAGAGAAAATATGGGG+AGG | - | chr5_1:25367309-25367328 | Msa0725650:CDS | 40.0% | |
| ! | CAGGCTTTAGCTTAGTTCTT+TGG | - | chr5_1:25368092-25368111 | Msa0725650:intron | 40.0% |
| ACTCTACCTGATCCTAATGA+TGG | - | chr5_1:25368426-25368445 | Msa0725650:intron | 40.0% | |
| TAACTGATGATCTGTCACCA+TGG | + | chr5_1:25368491-25368510 | None:intergenic | 40.0% | |
| ! | GGTTGTTATTACCTGTGTTG+GGG | + | chr5_1:25368540-25368559 | None:intergenic | 40.0% |
| ! | GGGTTGTTATTACCTGTGTT+GGG | + | chr5_1:25368541-25368560 | None:intergenic | 40.0% |
| ! | AGGGTTGTTATTACCTGTGT+TGG | + | chr5_1:25368542-25368561 | None:intergenic | 40.0% |
| TGCTTCAAAGCAAGGTTGAA+GGG | + | chr5_1:25367255-25367274 | None:intergenic | 40.0% | |
| ATGCTTCAAAGCAAGGTTGA+AGG | + | chr5_1:25367256-25367275 | None:intergenic | 40.0% | |
| TATCCAGATGCTTCAAAGCA+AGG | + | chr5_1:25367263-25367282 | None:intergenic | 40.0% | |
| CTCTGGTAAATACTCAAGCT+CGG | + | chr5_1:25367298-25367317 | None:intergenic | 40.0% | |
| TTACCAGAGAAAATATGGGG+AGG | - | chr5_1:25367309-25367328 | Msa0725650:CDS | 40.0% | |
| ! | CAGGCTTTAGCTTAGTTCTT+TGG | - | chr5_1:25368092-25368111 | Msa0725650:intron | 40.0% |
| ACTCTACCTGATCCTAATGA+TGG | - | chr5_1:25368426-25368445 | Msa0725650:intron | 40.0% | |
| TAACTGATGATCTGTCACCA+TGG | + | chr5_1:25368491-25368510 | None:intergenic | 40.0% | |
| ! | GGTTGTTATTACCTGTGTTG+GGG | + | chr5_1:25368540-25368559 | None:intergenic | 40.0% |
| ! | GGGTTGTTATTACCTGTGTT+GGG | + | chr5_1:25368541-25368560 | None:intergenic | 40.0% |
| ! | AGGGTTGTTATTACCTGTGT+TGG | + | chr5_1:25368542-25368561 | None:intergenic | 40.0% |
| GCAAGGTTGAAGGGTTCATT+TGG | + | chr5_1:25367246-25367265 | None:intergenic | 45.0% | |
| !! | CAACCTTGCTTTGAAGCATC+TGG | - | chr5_1:25367257-25367276 | Msa0725650:CDS | 45.0% |
| ! | AGACCTCCCCATATTTTCTC+TGG | + | chr5_1:25367315-25367334 | None:intergenic | 45.0% |
| TATACGTGCATGCCCAACAT+TGG | - | chr5_1:25367428-25367447 | Msa0725650:intron | 45.0% | |
| TGCATCGCATCTCCAATGTT+GGG | + | chr5_1:25367443-25367462 | None:intergenic | 45.0% | |
| TTGCATCGCATCTCCAATGT+TGG | + | chr5_1:25367444-25367463 | None:intergenic | 45.0% | |
| ATTGGAGATGCGATGCAATG+AGG | - | chr5_1:25367446-25367465 | Msa0725650:intron | 45.0% | |
| TTGGAGATGCGATGCAATGA+GGG | - | chr5_1:25367447-25367466 | Msa0725650:intron | 45.0% | |
| TATCTTGTCCCAGTCTTCTC+CGG | + | chr5_1:25367475-25367494 | None:intergenic | 45.0% | |
| !! | AAAGGGAGCGTCAATAGTGA+GGG | + | chr5_1:25367605-25367624 | None:intergenic | 45.0% |
| TTACTCCGGAGCTCATTCTT+GGG | + | chr5_1:25368126-25368145 | None:intergenic | 45.0% | |
| TTTACTCCGGAGCTCATTCT+TGG | + | chr5_1:25368127-25368146 | None:intergenic | 45.0% | |
| TTCATTATGCGAAGCCAGAG+AGG | - | chr5_1:25368460-25368479 | Msa0725650:intron | 45.0% | |
| TCATTATGCGAAGCCAGAGA+GGG | - | chr5_1:25368461-25368480 | Msa0725650:intron | 45.0% | |
| AACAACCCTTCCATGCTTGA+TGG | - | chr5_1:25368553-25368572 | Msa0725650:intron | 45.0% | |
| TCTGTCCATCAAGCATGGAA+GGG | + | chr5_1:25368561-25368580 | None:intergenic | 45.0% | |
| TCAAGTCTGTCCATCAAGCA+TGG | + | chr5_1:25368566-25368585 | None:intergenic | 45.0% | |
| GCAAGGTTGAAGGGTTCATT+TGG | + | chr5_1:25367246-25367265 | None:intergenic | 45.0% | |
| !! | CAACCTTGCTTTGAAGCATC+TGG | - | chr5_1:25367257-25367276 | Msa0725650:CDS | 45.0% |
| ! | AGACCTCCCCATATTTTCTC+TGG | + | chr5_1:25367315-25367334 | None:intergenic | 45.0% |
| TATACGTGCATGCCCAACAT+TGG | - | chr5_1:25367428-25367447 | Msa0725650:intron | 45.0% | |
| TGCATCGCATCTCCAATGTT+GGG | + | chr5_1:25367443-25367462 | None:intergenic | 45.0% | |
| TTGCATCGCATCTCCAATGT+TGG | + | chr5_1:25367444-25367463 | None:intergenic | 45.0% | |
| ATTGGAGATGCGATGCAATG+AGG | - | chr5_1:25367446-25367465 | Msa0725650:intron | 45.0% | |
| TTGGAGATGCGATGCAATGA+GGG | - | chr5_1:25367447-25367466 | Msa0725650:intron | 45.0% | |
| TATCTTGTCCCAGTCTTCTC+CGG | + | chr5_1:25367475-25367494 | None:intergenic | 45.0% | |
| !! | AAAGGGAGCGTCAATAGTGA+GGG | + | chr5_1:25367605-25367624 | None:intergenic | 45.0% |
| TTACTCCGGAGCTCATTCTT+GGG | + | chr5_1:25368126-25368145 | None:intergenic | 45.0% | |
| TTTACTCCGGAGCTCATTCT+TGG | + | chr5_1:25368127-25368146 | None:intergenic | 45.0% | |
| TTCATTATGCGAAGCCAGAG+AGG | - | chr5_1:25368460-25368479 | Msa0725650:intron | 45.0% | |
| TCATTATGCGAAGCCAGAGA+GGG | - | chr5_1:25368461-25368480 | Msa0725650:intron | 45.0% | |
| AACAACCCTTCCATGCTTGA+TGG | - | chr5_1:25368553-25368572 | Msa0725650:intron | 45.0% | |
| TCTGTCCATCAAGCATGGAA+GGG | + | chr5_1:25368561-25368580 | None:intergenic | 45.0% | |
| TCAAGTCTGTCCATCAAGCA+TGG | + | chr5_1:25368566-25368585 | None:intergenic | 45.0% | |
| !! | AAAACAAATAAATTAATTAA+AGG | + | chr5_1:25368393-25368412 | None:intergenic | 5.0% |
| !! | AAAACAAATAAATTAATTAA+AGG | + | chr5_1:25368393-25368412 | None:intergenic | 5.0% |
| ! | GTGAGGTGTCTAATACCGTC+CGG | + | chr5_1:25367390-25367409 | None:intergenic | 50.0% |
| ATGCGATGCAATGAGGGAAC+CGG | - | chr5_1:25367453-25367472 | Msa0725650:intron | 50.0% | |
| !! | CAAAGGGAGCGTCAATAGTG+AGG | + | chr5_1:25367606-25367625 | None:intergenic | 50.0% |
| CCTTTCCCAAGAATGAGCTC+CGG | - | chr5_1:25368118-25368137 | Msa0725650:intron | 50.0% | |
| GTCTGTCCATCAAGCATGGA+AGG | + | chr5_1:25368562-25368581 | None:intergenic | 50.0% | |
| ! | GTGAGGTGTCTAATACCGTC+CGG | + | chr5_1:25367390-25367409 | None:intergenic | 50.0% |
| ATGCGATGCAATGAGGGAAC+CGG | - | chr5_1:25367453-25367472 | Msa0725650:intron | 50.0% | |
| !! | CAAAGGGAGCGTCAATAGTG+AGG | + | chr5_1:25367606-25367625 | None:intergenic | 50.0% |
| CCTTTCCCAAGAATGAGCTC+CGG | - | chr5_1:25368118-25368137 | Msa0725650:intron | 50.0% | |
| GTCTGTCCATCAAGCATGGA+AGG | + | chr5_1:25368562-25368581 | None:intergenic | 50.0% | |
| ATGAGGGAACCGGAGAAGAC+TGG | - | chr5_1:25367463-25367482 | Msa0725650:intron | 55.0% | |
| TGAGGGAACCGGAGAAGACT+GGG | - | chr5_1:25367464-25367483 | Msa0725650:intron | 55.0% | |
| CCGGAGCTCATTCTTGGGAA+AGG | + | chr5_1:25368121-25368140 | None:intergenic | 55.0% | |
| AAGCCAGAGAGGGAGAACCA+TGG | - | chr5_1:25368471-25368490 | Msa0725650:intron | 55.0% | |
| TCACCATGGTTCTCCCTCTC+TGG | + | chr5_1:25368477-25368496 | None:intergenic | 55.0% | |
| ATGAGGGAACCGGAGAAGAC+TGG | - | chr5_1:25367463-25367482 | Msa0725650:intron | 55.0% | |
| TGAGGGAACCGGAGAAGACT+GGG | - | chr5_1:25367464-25367483 | Msa0725650:intron | 55.0% | |
| CCGGAGCTCATTCTTGGGAA+AGG | + | chr5_1:25368121-25368140 | None:intergenic | 55.0% | |
| AAGCCAGAGAGGGAGAACCA+TGG | - | chr5_1:25368471-25368490 | Msa0725650:intron | 55.0% | |
| TCACCATGGTTCTCCCTCTC+TGG | + | chr5_1:25368477-25368496 | None:intergenic | 55.0% | |
| CTCAAGCTTCGCCCCAACAC+AGG | - | chr5_1:25368526-25368545 | Msa0725650:intron | 60.0% | |
| CTCAAGCTTCGCCCCAACAC+AGG | - | chr5_1:25368526-25368545 | Msa0725650:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25367231 | 25368776 | 25367231 | ID=Msa0725650;Name=Msa0725650 |
| chr5_1 | mRNA | 25367231 | 25368776 | 25367231 | ID=Msa0725650-mRNA-1;Parent=Msa0725650;Name=Msa0725650-mRNA-1;_AED=0.87;_eAED=1.00;_QI=0|0|0|0.25|0.66|0.75|4|0|122 |
| chr5_1 | exon | 25368677 | 25368776 | 25368677 | ID=Msa0725650-mRNA-1:exon:9188;Parent=Msa0725650-mRNA-1 |
| chr5_1 | exon | 25367844 | 25367912 | 25367844 | ID=Msa0725650-mRNA-1:exon:9187;Parent=Msa0725650-mRNA-1 |
| chr5_1 | exon | 25367501 | 25367589 | 25367501 | ID=Msa0725650-mRNA-1:exon:9186;Parent=Msa0725650-mRNA-1 |
| chr5_1 | exon | 25367231 | 25367341 | 25367231 | ID=Msa0725650-mRNA-1:exon:9185;Parent=Msa0725650-mRNA-1 |
| chr5_1 | CDS | 25368677 | 25368776 | 25368677 | ID=Msa0725650-mRNA-1:cds;Parent=Msa0725650-mRNA-1 |
| chr5_1 | CDS | 25367844 | 25367912 | 25367844 | ID=Msa0725650-mRNA-1:cds;Parent=Msa0725650-mRNA-1 |
| chr5_1 | CDS | 25367501 | 25367589 | 25367501 | ID=Msa0725650-mRNA-1:cds;Parent=Msa0725650-mRNA-1 |
| chr5_1 | CDS | 25367231 | 25367341 | 25367231 | ID=Msa0725650-mRNA-1:cds;Parent=Msa0725650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
