Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845730 | AES96742.1 | 75.893 | 112 | 18 | 3 | 2 | 110 | 18 | 123 | 3.73e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845730 | G7KF96 | 75.893 | 112 | 18 | 3 | 2 | 110 | 18 | 123 | 1.78e-47 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070810 | Msa0845730 | 0.801733 | 7.833063e-49 | -8.615850e-47 |
| Msa0692910 | Msa0845730 | 0.807022 | 6.192736e-50 | -8.615850e-47 |
| Msa0725640 | Msa0845730 | 0.986390 | 1.250839e-166 | -8.615850e-47 |
| Msa0725650 | Msa0845730 | 0.807999 | 3.841145e-50 | -8.615850e-47 |
| Msa0349450 | Msa0845730 | 0.802518 | 5.400131e-49 | -8.615850e-47 |
| Msa0845730 | Msa0845740 | 0.847508 | 1.106209e-59 | -8.615850e-47 |
| Msa0845730 | Msa0985430 | 0.800368 | 1.489598e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845730 | MtrunA17_Chr3g0113701 | 57.692 | 52 | 22 | 0 | 4 | 55 | 968 | 1019 | 5.90e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845730 | AT3G11130.1 | 57.692 | 52 | 22 | 0 | 4 | 55 | 967 | 1018 | 2.54e-11 | 59.3 |
Find 24 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTTCACTGCCTTCTT+TGG | 0.143713 | 5_4:+25090483 | None:intergenic |
| GATTTGAATGTAATGTATTT+TGG | 0.199982 | 5_4:-25090550 | Msa0845730:CDS |
| TTGATGAATCAACCGTCTTC+TGG | 0.291397 | 5_4:+25091488 | None:intergenic |
| GCTCAGGGCTCTTGCTTTCT+CGG | 0.309822 | 5_4:+25091448 | None:intergenic |
| GTTCCTCATCGTTCAATTTG+CGG | 0.381341 | 5_4:+25090451 | None:intergenic |
| ATTTATGTGATTTACCATTT+GGG | 0.401363 | 5_4:+25091263 | None:intergenic |
| GGCTGAACTTCCCCATGCCA+TGG | 0.485955 | 5_4:-25091394 | Msa0845730:CDS |
| CAAAGAAGGCAGTGAAATGA+AGG | 0.488888 | 5_4:-25090482 | Msa0845730:CDS |
| TCAAAATATTCAGCTTTCCA+TGG | 0.490614 | 5_4:-25091290 | Msa0845730:CDS |
| TCTCAATCAACCCATGGCAT+GGG | 0.494707 | 5_4:+25091383 | None:intergenic |
| CTGGACTCATAATCGTAAAG+TGG | 0.500636 | 5_4:+25091507 | None:intergenic |
| GTCTCAATCAACCCATGGCA+TGG | 0.509828 | 5_4:+25091382 | None:intergenic |
| TTTACCATTTGGGTCATCCA+TGG | 0.522483 | 5_4:+25091273 | None:intergenic |
| CTTTCCATGGATGACCCAAA+TGG | 0.542785 | 5_4:-25091277 | Msa0845730:intron |
| AAGGCAGTGAAATGAAGGAA+AGG | 0.545158 | 5_4:-25090477 | Msa0845730:CDS |
| GCTGAACTTCCCCATGCCAT+GGG | 0.559299 | 5_4:-25091393 | Msa0845730:intron |
| GAACAAGGAATCTCCAAAGA+AGG | 0.561017 | 5_4:-25090496 | Msa0845730:CDS |
| TGGACTCATAATCGTAAAGT+GGG | 0.594969 | 5_4:+25091508 | None:intergenic |
| CTTGCTTTCTCGGAAAACAG+TGG | 0.609184 | 5_4:+25091458 | None:intergenic |
| AATCATAACATGCATGAACA+AGG | 0.612137 | 5_4:-25090511 | Msa0845730:CDS |
| CTCAATCAACCCATGGCATG+GGG | 0.619541 | 5_4:+25091384 | None:intergenic |
| ACGATTATGAGTCCAGAAGA+CGG | 0.640298 | 5_4:-25091500 | Msa0845730:CDS |
| AAACCGCAAATTGAACGATG+AGG | 0.696659 | 5_4:-25090454 | None:intergenic |
| AAAGTGGGATCTTCTCGCAG+AGG | 0.701756 | 5_4:+25091523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATACTGAAAATT+TGG | - | chr5_4:25090819-25090838 | Msa0845730:intron | 15.0% |
| !!! | TAATACAATCTAACTTATTT+TGG | - | chr5_4:25090951-25090970 | Msa0845730:intron | 15.0% |
| !! | AACAAAAAATACTGAAAATT+TGG | - | chr5_4:25090819-25090838 | Msa0845730:intron | 15.0% |
| !!! | TAATACAATCTAACTTATTT+TGG | - | chr5_4:25090951-25090970 | Msa0845730:intron | 15.0% |
| !! | ATTTATGTGATTTACCATTT+GGG | + | chr5_4:25090733-25090752 | None:intergenic | 20.0% |
| !! | AATTTATGTGATTTACCATT+TGG | + | chr5_4:25090734-25090753 | None:intergenic | 20.0% |
| !! | AATCACATAAATTGTAACTT+AGG | - | chr5_4:25090741-25090760 | Msa0845730:intron | 20.0% |
| !!! | TGAATATTTTAACCTTTAGT+AGG | - | chr5_4:25091237-25091256 | Msa0845730:intron | 20.0% |
| !!! | GATTTGAATGTAATGTATTT+TGG | - | chr5_4:25091443-25091462 | Msa0845730:CDS | 20.0% |
| !! | ATTTATGTGATTTACCATTT+GGG | + | chr5_4:25090733-25090752 | None:intergenic | 20.0% |
| !! | AATTTATGTGATTTACCATT+TGG | + | chr5_4:25090734-25090753 | None:intergenic | 20.0% |
| !! | AATCACATAAATTGTAACTT+AGG | - | chr5_4:25090741-25090760 | Msa0845730:intron | 20.0% |
| !!! | TGAATATTTTAACCTTTAGT+AGG | - | chr5_4:25091237-25091256 | Msa0845730:intron | 20.0% |
| !!! | GATTTGAATGTAATGTATTT+TGG | - | chr5_4:25091443-25091462 | Msa0845730:CDS | 20.0% |
| !! | TGCTATGAAAGTTTTTATGA+CGG | - | chr5_4:25090578-25090597 | Msa0845730:intron | 25.0% |
| !!! | CAATCTAACTTATTTTGGAA+AGG | - | chr5_4:25090956-25090975 | Msa0845730:intron | 25.0% |
| ! | TTGTGTCTTGAAACTATTAT+AGG | + | chr5_4:25091000-25091019 | None:intergenic | 25.0% |
| ! | AAAAAAATCAAGTTACATGC+AGG | + | chr5_4:25091047-25091066 | None:intergenic | 25.0% |
| ! | TCAATGTCACAAATAACATT+AGG | + | chr5_4:25091072-25091091 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCCTTTGCTATA+AGG | + | chr5_4:25091400-25091419 | None:intergenic | 25.0% |
| ! | AAAATAACAGTATCTTGTAG+AGG | - | chr5_4:25091412-25091431 | Msa0845730:CDS | 25.0% |
| !!! | GTAATGTATTTTGGTTATAC+AGG | - | chr5_4:25091452-25091471 | Msa0845730:CDS | 25.0% |
| !!! | TATTTTGGTTATACAGGTAA+GGG | - | chr5_4:25091458-25091477 | Msa0845730:CDS | 25.0% |
| !! | TGCTATGAAAGTTTTTATGA+CGG | - | chr5_4:25090578-25090597 | Msa0845730:intron | 25.0% |
| !!! | CAATCTAACTTATTTTGGAA+AGG | - | chr5_4:25090956-25090975 | Msa0845730:intron | 25.0% |
| ! | TTGTGTCTTGAAACTATTAT+AGG | + | chr5_4:25091000-25091019 | None:intergenic | 25.0% |
| ! | AAAAAAATCAAGTTACATGC+AGG | + | chr5_4:25091047-25091066 | None:intergenic | 25.0% |
| ! | TCAATGTCACAAATAACATT+AGG | + | chr5_4:25091072-25091091 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCCTTTGCTATA+AGG | + | chr5_4:25091400-25091419 | None:intergenic | 25.0% |
| ! | AAAATAACAGTATCTTGTAG+AGG | - | chr5_4:25091412-25091431 | Msa0845730:CDS | 25.0% |
| !!! | GTAATGTATTTTGGTTATAC+AGG | - | chr5_4:25091452-25091471 | Msa0845730:CDS | 25.0% |
| !!! | TATTTTGGTTATACAGGTAA+GGG | - | chr5_4:25091458-25091477 | Msa0845730:CDS | 25.0% |
| AAACTTCAATCTTCCATGTT+TGG | - | chr5_4:25090653-25090672 | Msa0845730:intron | 30.0% | |
| !!! | AAGCTGAATATTTTGAGACA+TGG | + | chr5_4:25090699-25090718 | None:intergenic | 30.0% |
| TCAAAATATTCAGCTTTCCA+TGG | - | chr5_4:25090703-25090722 | Msa0845730:intron | 30.0% | |
| ! | TGTTATTTGTGACATTGACT+AGG | - | chr5_4:25091074-25091093 | Msa0845730:intron | 30.0% |
| GGACATATTTGATTCTTGAA+TGG | + | chr5_4:25091124-25091143 | None:intergenic | 30.0% | |
| AGCAACGATTTATCAGTTAT+AGG | + | chr5_4:25091145-25091164 | None:intergenic | 30.0% | |
| TATAACTGATAAATCGTTGC+TGG | - | chr5_4:25091144-25091163 | Msa0845730:intron | 30.0% | |
| AAAATCCATCCTTATAGCAA+AGG | - | chr5_4:25091388-25091407 | Msa0845730:intron | 30.0% | |
| !! | TTTTTCCTTTGCTATAAGGA+TGG | + | chr5_4:25091396-25091415 | None:intergenic | 30.0% |
| !!! | GTATTTTGGTTATACAGGTA+AGG | - | chr5_4:25091457-25091476 | Msa0845730:CDS | 30.0% |
| AATCATAACATGCATGAACA+AGG | - | chr5_4:25091482-25091501 | Msa0845730:CDS | 30.0% | |
| AAACTTCAATCTTCCATGTT+TGG | - | chr5_4:25090653-25090672 | Msa0845730:intron | 30.0% | |
| !!! | AAGCTGAATATTTTGAGACA+TGG | + | chr5_4:25090699-25090718 | None:intergenic | 30.0% |
| TCAAAATATTCAGCTTTCCA+TGG | - | chr5_4:25090703-25090722 | Msa0845730:intron | 30.0% | |
| ! | TGTTATTTGTGACATTGACT+AGG | - | chr5_4:25091074-25091093 | Msa0845730:intron | 30.0% |
| GGACATATTTGATTCTTGAA+TGG | + | chr5_4:25091124-25091143 | None:intergenic | 30.0% | |
| AGCAACGATTTATCAGTTAT+AGG | + | chr5_4:25091145-25091164 | None:intergenic | 30.0% | |
| TATAACTGATAAATCGTTGC+TGG | - | chr5_4:25091144-25091163 | Msa0845730:intron | 30.0% | |
| AAAATCCATCCTTATAGCAA+AGG | - | chr5_4:25091388-25091407 | Msa0845730:intron | 30.0% | |
| !! | TTTTTCCTTTGCTATAAGGA+TGG | + | chr5_4:25091396-25091415 | None:intergenic | 30.0% |
| !!! | GTATTTTGGTTATACAGGTA+AGG | - | chr5_4:25091457-25091476 | Msa0845730:CDS | 30.0% |
| AATCATAACATGCATGAACA+AGG | - | chr5_4:25091482-25091501 | Msa0845730:CDS | 30.0% | |
| TGGACTCATAATCGTAAAGT+GGG | + | chr5_4:25090488-25090507 | None:intergenic | 35.0% | |
| TTGTAACTTAGGCTATTCTC+AGG | - | chr5_4:25090752-25090771 | Msa0845730:intron | 35.0% | |
| ! | ATTTGTGACATTGACTAGGA+CGG | - | chr5_4:25091078-25091097 | Msa0845730:intron | 35.0% |
| TCTTGAATGGAGTTCTCAAA+GGG | + | chr5_4:25091111-25091130 | None:intergenic | 35.0% | |
| TTCTTGAATGGAGTTCTCAA+AGG | + | chr5_4:25091112-25091131 | None:intergenic | 35.0% | |
| ! | AAATCGTTGCTGGTTAAAGT+TGG | - | chr5_4:25091154-25091173 | Msa0845730:intron | 35.0% |
| ACACAAAGAAAGCCTACTAA+AGG | + | chr5_4:25091252-25091271 | None:intergenic | 35.0% | |
| AAAAACCAATTCCAAGCACA+AGG | + | chr5_4:25091309-25091328 | None:intergenic | 35.0% | |
| TGGACTCATAATCGTAAAGT+GGG | + | chr5_4:25090488-25090507 | None:intergenic | 35.0% | |
| TTGTAACTTAGGCTATTCTC+AGG | - | chr5_4:25090752-25090771 | Msa0845730:intron | 35.0% | |
| ! | ATTTGTGACATTGACTAGGA+CGG | - | chr5_4:25091078-25091097 | Msa0845730:intron | 35.0% |
| TCTTGAATGGAGTTCTCAAA+GGG | + | chr5_4:25091111-25091130 | None:intergenic | 35.0% | |
| TTCTTGAATGGAGTTCTCAA+AGG | + | chr5_4:25091112-25091131 | None:intergenic | 35.0% | |
| ! | AAATCGTTGCTGGTTAAAGT+TGG | - | chr5_4:25091154-25091173 | Msa0845730:intron | 35.0% |
| ACACAAAGAAAGCCTACTAA+AGG | + | chr5_4:25091252-25091271 | None:intergenic | 35.0% | |
| AAAAACCAATTCCAAGCACA+AGG | + | chr5_4:25091309-25091328 | None:intergenic | 35.0% | |
| CTGGACTCATAATCGTAAAG+TGG | + | chr5_4:25090489-25090508 | None:intergenic | 40.0% | |
| ACGATTATGAGTCCAGAAGA+CGG | - | chr5_4:25090493-25090512 | Msa0845730:CDS | 40.0% | |
| TTGATGAATCAACCGTCTTC+TGG | + | chr5_4:25090508-25090527 | None:intergenic | 40.0% | |
| TAGCAGCTGAAAAATGCTCA+GGG | + | chr5_4:25090563-25090582 | None:intergenic | 40.0% | |
| ATAGCAGCTGAAAAATGCTC+AGG | + | chr5_4:25090564-25090583 | None:intergenic | 40.0% | |
| ATTGTGTCTCAATCAACCCA+TGG | + | chr5_4:25090619-25090638 | None:intergenic | 40.0% | |
| CTTCAATCTTCCATGTTTGG+TGG | - | chr5_4:25090656-25090675 | Msa0845730:intron | 40.0% | |
| !!! | TTTTGAGACATGGAGTCAAG+AGG | + | chr5_4:25090689-25090708 | None:intergenic | 40.0% |
| TTTACCATTTGGGTCATCCA+TGG | + | chr5_4:25090723-25090742 | None:intergenic | 40.0% | |
| ! | GCTGGTTAAAGTTGGTTTCA+AGG | - | chr5_4:25091162-25091181 | Msa0845730:intron | 40.0% |
| AGCGAAAAAATGAGCTGTGA+AGG | + | chr5_4:25091357-25091376 | None:intergenic | 40.0% | |
| GAACAAGGAATCTCCAAAGA+AGG | - | chr5_4:25091497-25091516 | Msa0845730:CDS | 40.0% | |
| CTTCATTTCACTGCCTTCTT+TGG | + | chr5_4:25091513-25091532 | None:intergenic | 40.0% | |
| CAAAGAAGGCAGTGAAATGA+AGG | - | chr5_4:25091511-25091530 | Msa0845730:CDS | 40.0% | |
| AAGGCAGTGAAATGAAGGAA+AGG | - | chr5_4:25091516-25091535 | Msa0845730:CDS | 40.0% | |
| CTGGACTCATAATCGTAAAG+TGG | + | chr5_4:25090489-25090508 | None:intergenic | 40.0% | |
| ACGATTATGAGTCCAGAAGA+CGG | - | chr5_4:25090493-25090512 | Msa0845730:CDS | 40.0% | |
| TTGATGAATCAACCGTCTTC+TGG | + | chr5_4:25090508-25090527 | None:intergenic | 40.0% | |
| TAGCAGCTGAAAAATGCTCA+GGG | + | chr5_4:25090563-25090582 | None:intergenic | 40.0% | |
| ATAGCAGCTGAAAAATGCTC+AGG | + | chr5_4:25090564-25090583 | None:intergenic | 40.0% | |
| ATTGTGTCTCAATCAACCCA+TGG | + | chr5_4:25090619-25090638 | None:intergenic | 40.0% | |
| CTTCAATCTTCCATGTTTGG+TGG | - | chr5_4:25090656-25090675 | Msa0845730:intron | 40.0% | |
| !!! | TTTTGAGACATGGAGTCAAG+AGG | + | chr5_4:25090689-25090708 | None:intergenic | 40.0% |
| TTTACCATTTGGGTCATCCA+TGG | + | chr5_4:25090723-25090742 | None:intergenic | 40.0% | |
| ! | GCTGGTTAAAGTTGGTTTCA+AGG | - | chr5_4:25091162-25091181 | Msa0845730:intron | 40.0% |
| AGCGAAAAAATGAGCTGTGA+AGG | + | chr5_4:25091357-25091376 | None:intergenic | 40.0% | |
| GAACAAGGAATCTCCAAAGA+AGG | - | chr5_4:25091497-25091516 | Msa0845730:CDS | 40.0% | |
| CTTCATTTCACTGCCTTCTT+TGG | + | chr5_4:25091513-25091532 | None:intergenic | 40.0% | |
| CAAAGAAGGCAGTGAAATGA+AGG | - | chr5_4:25091511-25091530 | Msa0845730:CDS | 40.0% | |
| AAGGCAGTGAAATGAAGGAA+AGG | - | chr5_4:25091516-25091535 | Msa0845730:CDS | 40.0% | |
| CTTGCTTTCTCGGAAAACAG+TGG | + | chr5_4:25090538-25090557 | None:intergenic | 45.0% | |
| TCTCAATCAACCCATGGCAT+GGG | + | chr5_4:25090613-25090632 | None:intergenic | 45.0% | |
| !! | TCTTCCATGTTTGGTGGTGA+AGG | - | chr5_4:25090662-25090681 | Msa0845730:intron | 45.0% |
| CTTTCCATGGATGACCCAAA+TGG | - | chr5_4:25090716-25090735 | Msa0845730:intron | 45.0% | |
| GCTATTCTCAGGTGTCAGTT+GGG | - | chr5_4:25090763-25090782 | Msa0845730:intron | 45.0% | |
| CTATTCTCAGGTGTCAGTTG+GGG | - | chr5_4:25090764-25090783 | Msa0845730:intron | 45.0% | |
| AACCAATTCCAAGCACAAGG+AGG | + | chr5_4:25091306-25091325 | None:intergenic | 45.0% | |
| CTTGCTTTCTCGGAAAACAG+TGG | + | chr5_4:25090538-25090557 | None:intergenic | 45.0% | |
| TCTCAATCAACCCATGGCAT+GGG | + | chr5_4:25090613-25090632 | None:intergenic | 45.0% | |
| !! | TCTTCCATGTTTGGTGGTGA+AGG | - | chr5_4:25090662-25090681 | Msa0845730:intron | 45.0% |
| CTTTCCATGGATGACCCAAA+TGG | - | chr5_4:25090716-25090735 | Msa0845730:intron | 45.0% | |
| GCTATTCTCAGGTGTCAGTT+GGG | - | chr5_4:25090763-25090782 | Msa0845730:intron | 45.0% | |
| CTATTCTCAGGTGTCAGTTG+GGG | - | chr5_4:25090764-25090783 | Msa0845730:intron | 45.0% | |
| AACCAATTCCAAGCACAAGG+AGG | + | chr5_4:25091306-25091325 | None:intergenic | 45.0% | |
| !!! | TAAGAAATATTTAATTTAAA+TGG | - | chr5_4:25090853-25090872 | Msa0845730:intron | 5.0% |
| !!! | TAAGAAATATTTAATTTAAA+TGG | - | chr5_4:25090853-25090872 | Msa0845730:intron | 5.0% |
| AAAGTGGGATCTTCTCGCAG+AGG | + | chr5_4:25090473-25090492 | None:intergenic | 50.0% | |
| CTCAATCAACCCATGGCATG+GGG | + | chr5_4:25090612-25090631 | None:intergenic | 50.0% | |
| GTCTCAATCAACCCATGGCA+TGG | + | chr5_4:25090614-25090633 | None:intergenic | 50.0% | |
| AGGACCTTCACCACCAAACA+TGG | + | chr5_4:25090669-25090688 | None:intergenic | 50.0% | |
| GGCTATTCTCAGGTGTCAGT+TGG | - | chr5_4:25090762-25090781 | Msa0845730:intron | 50.0% | |
| AAGCACAAGGAGGTGGAAAG+AGG | + | chr5_4:25091296-25091315 | None:intergenic | 50.0% | |
| TCTTTCCACCTCCTTGTGCT+TGG | - | chr5_4:25091295-25091314 | Msa0845730:CDS | 50.0% | |
| CAATTCCAAGCACAAGGAGG+TGG | + | chr5_4:25091303-25091322 | None:intergenic | 50.0% | |
| CACCTCCTTGTGCTTGGAAT+TGG | - | chr5_4:25091301-25091320 | Msa0845730:CDS | 50.0% | |
| AAAGTGGGATCTTCTCGCAG+AGG | + | chr5_4:25090473-25090492 | None:intergenic | 50.0% | |
| CTCAATCAACCCATGGCATG+GGG | + | chr5_4:25090612-25090631 | None:intergenic | 50.0% | |
| GTCTCAATCAACCCATGGCA+TGG | + | chr5_4:25090614-25090633 | None:intergenic | 50.0% | |
| AGGACCTTCACCACCAAACA+TGG | + | chr5_4:25090669-25090688 | None:intergenic | 50.0% | |
| GGCTATTCTCAGGTGTCAGT+TGG | - | chr5_4:25090762-25090781 | Msa0845730:intron | 50.0% | |
| AAGCACAAGGAGGTGGAAAG+AGG | + | chr5_4:25091296-25091315 | None:intergenic | 50.0% | |
| TCTTTCCACCTCCTTGTGCT+TGG | - | chr5_4:25091295-25091314 | Msa0845730:CDS | 50.0% | |
| CAATTCCAAGCACAAGGAGG+TGG | + | chr5_4:25091303-25091322 | None:intergenic | 50.0% | |
| CACCTCCTTGTGCTTGGAAT+TGG | - | chr5_4:25091301-25091320 | Msa0845730:CDS | 50.0% | |
| GCTCAGGGCTCTTGCTTTCT+CGG | + | chr5_4:25090548-25090567 | None:intergenic | 55.0% | |
| GCTGAACTTCCCCATGCCAT+GGG | - | chr5_4:25090600-25090619 | Msa0845730:intron | 55.0% | |
| GCTCAGGGCTCTTGCTTTCT+CGG | + | chr5_4:25090548-25090567 | None:intergenic | 55.0% | |
| GCTGAACTTCCCCATGCCAT+GGG | - | chr5_4:25090600-25090619 | Msa0845730:intron | 55.0% | |
| GGCTGAACTTCCCCATGCCA+TGG | - | chr5_4:25090599-25090618 | Msa0845730:intron | 60.0% | |
| GGCTGAACTTCCCCATGCCA+TGG | - | chr5_4:25090599-25090618 | Msa0845730:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 25090456 | 25091559 | 25090456 | ID=Msa0845730;Name=Msa0845730 |
| chr5_4 | mRNA | 25090456 | 25091559 | 25090456 | ID=Msa0845730-mRNA-1;Parent=Msa0845730;Name=Msa0845730-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0|0|3|0|111 |
| chr5_4 | exon | 25091394 | 25091559 | 25091394 | ID=Msa0845730-mRNA-1:exon:10048;Parent=Msa0845730-mRNA-1 |
| chr5_4 | exon | 25091278 | 25091331 | 25091278 | ID=Msa0845730-mRNA-1:exon:10047;Parent=Msa0845730-mRNA-1 |
| chr5_4 | exon | 25090456 | 25090571 | 25090456 | ID=Msa0845730-mRNA-1:exon:10046;Parent=Msa0845730-mRNA-1 |
| chr5_4 | CDS | 25091394 | 25091559 | 25091394 | ID=Msa0845730-mRNA-1:cds;Parent=Msa0845730-mRNA-1 |
| chr5_4 | CDS | 25091278 | 25091331 | 25091278 | ID=Msa0845730-mRNA-1:cds;Parent=Msa0845730-mRNA-1 |
| chr5_4 | CDS | 25090456 | 25090571 | 25090456 | ID=Msa0845730-mRNA-1:cds;Parent=Msa0845730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
