Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725640 | AES96742.1 | 75.893 | 112 | 18 | 3 | 2 | 110 | 18 | 123 | 3.73e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725640 | G7KF96 | 75.893 | 112 | 18 | 3 | 2 | 110 | 18 | 123 | 1.78e-47 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070810 | Msa0725640 | 0.808764 | 2.638346e-50 | -8.615850e-47 |
| Msa0692910 | Msa0725640 | 0.808596 | 2.866278e-50 | -8.615850e-47 |
| Msa0725640 | Msa0725650 | 0.829944 | 3.877775e-55 | -8.615850e-47 |
| Msa0725640 | Msa0845730 | 0.986390 | 1.250839e-166 | -8.615850e-47 |
| Msa0725640 | Msa0845740 | 0.862490 | 4.885763e-64 | -8.615850e-47 |
| Msa0725640 | Msa1214210 | 0.804779 | 1.833404e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725640 | MtrunA17_Chr3g0113701 | 57.692 | 52 | 22 | 0 | 4 | 55 | 968 | 1019 | 5.90e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725640 | AT3G11130.1 | 57.692 | 52 | 22 | 0 | 4 | 55 | 967 | 1018 | 2.54e-11 | 59.3 |
Find 24 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTTCACTGCCTTCTT+TGG | 0.143713 | 5_1:+25365994 | None:intergenic |
| GATTTGAATGTAATGTATTT+TGG | 0.199982 | 5_1:-25366061 | Msa0725640:CDS |
| TTGATGAATCAACCGTCTTC+TGG | 0.291397 | 5_1:+25366999 | None:intergenic |
| GCTCAGGGCTCTTGCTTTCT+CGG | 0.309822 | 5_1:+25366959 | None:intergenic |
| GTTCCTCATCGTTCAATTTG+CGG | 0.381341 | 5_1:+25365962 | None:intergenic |
| ATTTATGTGATTTACCATTT+GGG | 0.401363 | 5_1:+25366774 | None:intergenic |
| GGCTGAACTTCCCCATGCCA+TGG | 0.485955 | 5_1:-25366905 | Msa0725640:CDS |
| CAAAGAAGGCAGTGAAATGA+AGG | 0.488888 | 5_1:-25365993 | Msa0725640:CDS |
| TCAAAATATTCAGCTTTCCA+TGG | 0.490614 | 5_1:-25366801 | Msa0725640:CDS |
| TCTCAATCAACCCATGGCAT+GGG | 0.494707 | 5_1:+25366894 | None:intergenic |
| CTGGACTCATAATCGTAAAG+TGG | 0.500636 | 5_1:+25367018 | None:intergenic |
| GTCTCAATCAACCCATGGCA+TGG | 0.509828 | 5_1:+25366893 | None:intergenic |
| TTTACCATTTGGGTCATCCA+TGG | 0.522483 | 5_1:+25366784 | None:intergenic |
| CTTTCCATGGATGACCCAAA+TGG | 0.542785 | 5_1:-25366788 | Msa0725640:intron |
| AAGGCAGTGAAATGAAGGAA+AGG | 0.545158 | 5_1:-25365988 | Msa0725640:CDS |
| GCTGAACTTCCCCATGCCAT+GGG | 0.559299 | 5_1:-25366904 | Msa0725640:intron |
| GAACAAGGAATCTCCAAAGA+AGG | 0.561017 | 5_1:-25366007 | Msa0725640:CDS |
| TGGACTCATAATCGTAAAGT+GGG | 0.594969 | 5_1:+25367019 | None:intergenic |
| CTTGCTTTCTCGGAAAACAG+TGG | 0.609184 | 5_1:+25366969 | None:intergenic |
| AATCATAACATGCATGAACA+AGG | 0.612137 | 5_1:-25366022 | Msa0725640:CDS |
| CTCAATCAACCCATGGCATG+GGG | 0.619541 | 5_1:+25366895 | None:intergenic |
| ACGATTATGAGTCCAGAAGA+CGG | 0.640298 | 5_1:-25367011 | Msa0725640:CDS |
| AAACCGCAAATTGAACGATG+AGG | 0.696659 | 5_1:-25365965 | None:intergenic |
| AAAGTGGGATCTTCTCGCAG+AGG | 0.701756 | 5_1:+25367034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATACTGAAAATT+TGG | - | chr5_1:25366330-25366349 | Msa0725640:intron | 15.0% |
| !!! | TAATACAATCTAACTTATTT+TGG | - | chr5_1:25366462-25366481 | Msa0725640:intron | 15.0% |
| !! | AACAAAAAATACTGAAAATT+TGG | - | chr5_1:25366330-25366349 | Msa0725640:intron | 15.0% |
| !!! | TAATACAATCTAACTTATTT+TGG | - | chr5_1:25366462-25366481 | Msa0725640:intron | 15.0% |
| !! | ATTTATGTGATTTACCATTT+GGG | + | chr5_1:25366244-25366263 | None:intergenic | 20.0% |
| !! | AATTTATGTGATTTACCATT+TGG | + | chr5_1:25366245-25366264 | None:intergenic | 20.0% |
| !! | AATCACATAAATTGTAACTT+AGG | - | chr5_1:25366252-25366271 | Msa0725640:intron | 20.0% |
| !!! | TGAATATTTTAACCTTTAGT+AGG | - | chr5_1:25366748-25366767 | Msa0725640:intron | 20.0% |
| !!! | GATTTGAATGTAATGTATTT+TGG | - | chr5_1:25366954-25366973 | Msa0725640:CDS | 20.0% |
| !! | ATTTATGTGATTTACCATTT+GGG | + | chr5_1:25366244-25366263 | None:intergenic | 20.0% |
| !! | AATTTATGTGATTTACCATT+TGG | + | chr5_1:25366245-25366264 | None:intergenic | 20.0% |
| !! | AATCACATAAATTGTAACTT+AGG | - | chr5_1:25366252-25366271 | Msa0725640:intron | 20.0% |
| !!! | TGAATATTTTAACCTTTAGT+AGG | - | chr5_1:25366748-25366767 | Msa0725640:intron | 20.0% |
| !!! | GATTTGAATGTAATGTATTT+TGG | - | chr5_1:25366954-25366973 | Msa0725640:CDS | 20.0% |
| !! | TGCTATGAAAGTTTTTATGA+CGG | - | chr5_1:25366089-25366108 | Msa0725640:intron | 25.0% |
| !!! | CAATCTAACTTATTTTGGAA+AGG | - | chr5_1:25366467-25366486 | Msa0725640:intron | 25.0% |
| ! | TTGTGTCTTGAAACTATTAT+AGG | + | chr5_1:25366511-25366530 | None:intergenic | 25.0% |
| ! | AAAAAAATCAAGTTACATGC+AGG | + | chr5_1:25366558-25366577 | None:intergenic | 25.0% |
| ! | TCAATGTCACAAATAACATT+AGG | + | chr5_1:25366583-25366602 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCCTTTGCTATA+AGG | + | chr5_1:25366911-25366930 | None:intergenic | 25.0% |
| ! | AAAATAACAGTATCTTGTAG+AGG | - | chr5_1:25366923-25366942 | Msa0725640:CDS | 25.0% |
| !!! | GTAATGTATTTTGGTTATAC+AGG | - | chr5_1:25366963-25366982 | Msa0725640:CDS | 25.0% |
| !!! | TATTTTGGTTATACAGGTAA+GGG | - | chr5_1:25366969-25366988 | Msa0725640:CDS | 25.0% |
| !! | TGCTATGAAAGTTTTTATGA+CGG | - | chr5_1:25366089-25366108 | Msa0725640:intron | 25.0% |
| !!! | CAATCTAACTTATTTTGGAA+AGG | - | chr5_1:25366467-25366486 | Msa0725640:intron | 25.0% |
| ! | TTGTGTCTTGAAACTATTAT+AGG | + | chr5_1:25366511-25366530 | None:intergenic | 25.0% |
| ! | AAAAAAATCAAGTTACATGC+AGG | + | chr5_1:25366558-25366577 | None:intergenic | 25.0% |
| ! | TCAATGTCACAAATAACATT+AGG | + | chr5_1:25366583-25366602 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCCTTTGCTATA+AGG | + | chr5_1:25366911-25366930 | None:intergenic | 25.0% |
| ! | AAAATAACAGTATCTTGTAG+AGG | - | chr5_1:25366923-25366942 | Msa0725640:CDS | 25.0% |
| !!! | GTAATGTATTTTGGTTATAC+AGG | - | chr5_1:25366963-25366982 | Msa0725640:CDS | 25.0% |
| !!! | TATTTTGGTTATACAGGTAA+GGG | - | chr5_1:25366969-25366988 | Msa0725640:CDS | 25.0% |
| AAACTTCAATCTTCCATGTT+TGG | - | chr5_1:25366164-25366183 | Msa0725640:intron | 30.0% | |
| !!! | AAGCTGAATATTTTGAGACA+TGG | + | chr5_1:25366210-25366229 | None:intergenic | 30.0% |
| TCAAAATATTCAGCTTTCCA+TGG | - | chr5_1:25366214-25366233 | Msa0725640:intron | 30.0% | |
| ! | TGTTATTTGTGACATTGACT+AGG | - | chr5_1:25366585-25366604 | Msa0725640:intron | 30.0% |
| GGACATATTTGATTCTTGAA+TGG | + | chr5_1:25366635-25366654 | None:intergenic | 30.0% | |
| AGCAACGATTTATCAGTTAT+AGG | + | chr5_1:25366656-25366675 | None:intergenic | 30.0% | |
| TATAACTGATAAATCGTTGC+TGG | - | chr5_1:25366655-25366674 | Msa0725640:intron | 30.0% | |
| AAAATCCATCCTTATAGCAA+AGG | - | chr5_1:25366899-25366918 | Msa0725640:intron | 30.0% | |
| !! | TTTTTCCTTTGCTATAAGGA+TGG | + | chr5_1:25366907-25366926 | None:intergenic | 30.0% |
| !!! | GTATTTTGGTTATACAGGTA+AGG | - | chr5_1:25366968-25366987 | Msa0725640:CDS | 30.0% |
| AATCATAACATGCATGAACA+AGG | - | chr5_1:25366993-25367012 | Msa0725640:CDS | 30.0% | |
| AAACTTCAATCTTCCATGTT+TGG | - | chr5_1:25366164-25366183 | Msa0725640:intron | 30.0% | |
| !!! | AAGCTGAATATTTTGAGACA+TGG | + | chr5_1:25366210-25366229 | None:intergenic | 30.0% |
| TCAAAATATTCAGCTTTCCA+TGG | - | chr5_1:25366214-25366233 | Msa0725640:intron | 30.0% | |
| ! | TGTTATTTGTGACATTGACT+AGG | - | chr5_1:25366585-25366604 | Msa0725640:intron | 30.0% |
| GGACATATTTGATTCTTGAA+TGG | + | chr5_1:25366635-25366654 | None:intergenic | 30.0% | |
| AGCAACGATTTATCAGTTAT+AGG | + | chr5_1:25366656-25366675 | None:intergenic | 30.0% | |
| TATAACTGATAAATCGTTGC+TGG | - | chr5_1:25366655-25366674 | Msa0725640:intron | 30.0% | |
| AAAATCCATCCTTATAGCAA+AGG | - | chr5_1:25366899-25366918 | Msa0725640:intron | 30.0% | |
| !! | TTTTTCCTTTGCTATAAGGA+TGG | + | chr5_1:25366907-25366926 | None:intergenic | 30.0% |
| !!! | GTATTTTGGTTATACAGGTA+AGG | - | chr5_1:25366968-25366987 | Msa0725640:CDS | 30.0% |
| AATCATAACATGCATGAACA+AGG | - | chr5_1:25366993-25367012 | Msa0725640:CDS | 30.0% | |
| TGGACTCATAATCGTAAAGT+GGG | + | chr5_1:25365999-25366018 | None:intergenic | 35.0% | |
| TTGTAACTTAGGCTATTCTC+AGG | - | chr5_1:25366263-25366282 | Msa0725640:intron | 35.0% | |
| ! | ATTTGTGACATTGACTAGGA+CGG | - | chr5_1:25366589-25366608 | Msa0725640:intron | 35.0% |
| TCTTGAATGGAGTTCTCAAA+GGG | + | chr5_1:25366622-25366641 | None:intergenic | 35.0% | |
| TTCTTGAATGGAGTTCTCAA+AGG | + | chr5_1:25366623-25366642 | None:intergenic | 35.0% | |
| ! | AAATCGTTGCTGGTTAAAGT+TGG | - | chr5_1:25366665-25366684 | Msa0725640:intron | 35.0% |
| ACACAAAGAAAGCCTACTAA+AGG | + | chr5_1:25366763-25366782 | None:intergenic | 35.0% | |
| AAAAACCAATTCCAAGCACA+AGG | + | chr5_1:25366820-25366839 | None:intergenic | 35.0% | |
| TGGACTCATAATCGTAAAGT+GGG | + | chr5_1:25365999-25366018 | None:intergenic | 35.0% | |
| TTGTAACTTAGGCTATTCTC+AGG | - | chr5_1:25366263-25366282 | Msa0725640:intron | 35.0% | |
| ! | ATTTGTGACATTGACTAGGA+CGG | - | chr5_1:25366589-25366608 | Msa0725640:intron | 35.0% |
| TCTTGAATGGAGTTCTCAAA+GGG | + | chr5_1:25366622-25366641 | None:intergenic | 35.0% | |
| TTCTTGAATGGAGTTCTCAA+AGG | + | chr5_1:25366623-25366642 | None:intergenic | 35.0% | |
| ! | AAATCGTTGCTGGTTAAAGT+TGG | - | chr5_1:25366665-25366684 | Msa0725640:intron | 35.0% |
| ACACAAAGAAAGCCTACTAA+AGG | + | chr5_1:25366763-25366782 | None:intergenic | 35.0% | |
| AAAAACCAATTCCAAGCACA+AGG | + | chr5_1:25366820-25366839 | None:intergenic | 35.0% | |
| CTGGACTCATAATCGTAAAG+TGG | + | chr5_1:25366000-25366019 | None:intergenic | 40.0% | |
| ACGATTATGAGTCCAGAAGA+CGG | - | chr5_1:25366004-25366023 | Msa0725640:CDS | 40.0% | |
| TTGATGAATCAACCGTCTTC+TGG | + | chr5_1:25366019-25366038 | None:intergenic | 40.0% | |
| TAGCAGCTGAAAAATGCTCA+GGG | + | chr5_1:25366074-25366093 | None:intergenic | 40.0% | |
| ATAGCAGCTGAAAAATGCTC+AGG | + | chr5_1:25366075-25366094 | None:intergenic | 40.0% | |
| ATTGTGTCTCAATCAACCCA+TGG | + | chr5_1:25366130-25366149 | None:intergenic | 40.0% | |
| CTTCAATCTTCCATGTTTGG+TGG | - | chr5_1:25366167-25366186 | Msa0725640:intron | 40.0% | |
| !!! | TTTTGAGACATGGAGTCAAG+AGG | + | chr5_1:25366200-25366219 | None:intergenic | 40.0% |
| TTTACCATTTGGGTCATCCA+TGG | + | chr5_1:25366234-25366253 | None:intergenic | 40.0% | |
| ! | GCTGGTTAAAGTTGGTTTCA+AGG | - | chr5_1:25366673-25366692 | Msa0725640:intron | 40.0% |
| AGCGAAAAAATGAGCTGTGA+AGG | + | chr5_1:25366868-25366887 | None:intergenic | 40.0% | |
| GAACAAGGAATCTCCAAAGA+AGG | - | chr5_1:25367008-25367027 | Msa0725640:CDS | 40.0% | |
| CTTCATTTCACTGCCTTCTT+TGG | + | chr5_1:25367024-25367043 | None:intergenic | 40.0% | |
| CAAAGAAGGCAGTGAAATGA+AGG | - | chr5_1:25367022-25367041 | Msa0725640:CDS | 40.0% | |
| AAGGCAGTGAAATGAAGGAA+AGG | - | chr5_1:25367027-25367046 | Msa0725640:CDS | 40.0% | |
| CTGGACTCATAATCGTAAAG+TGG | + | chr5_1:25366000-25366019 | None:intergenic | 40.0% | |
| ACGATTATGAGTCCAGAAGA+CGG | - | chr5_1:25366004-25366023 | Msa0725640:CDS | 40.0% | |
| TTGATGAATCAACCGTCTTC+TGG | + | chr5_1:25366019-25366038 | None:intergenic | 40.0% | |
| TAGCAGCTGAAAAATGCTCA+GGG | + | chr5_1:25366074-25366093 | None:intergenic | 40.0% | |
| ATAGCAGCTGAAAAATGCTC+AGG | + | chr5_1:25366075-25366094 | None:intergenic | 40.0% | |
| ATTGTGTCTCAATCAACCCA+TGG | + | chr5_1:25366130-25366149 | None:intergenic | 40.0% | |
| CTTCAATCTTCCATGTTTGG+TGG | - | chr5_1:25366167-25366186 | Msa0725640:intron | 40.0% | |
| !!! | TTTTGAGACATGGAGTCAAG+AGG | + | chr5_1:25366200-25366219 | None:intergenic | 40.0% |
| TTTACCATTTGGGTCATCCA+TGG | + | chr5_1:25366234-25366253 | None:intergenic | 40.0% | |
| ! | GCTGGTTAAAGTTGGTTTCA+AGG | - | chr5_1:25366673-25366692 | Msa0725640:intron | 40.0% |
| AGCGAAAAAATGAGCTGTGA+AGG | + | chr5_1:25366868-25366887 | None:intergenic | 40.0% | |
| GAACAAGGAATCTCCAAAGA+AGG | - | chr5_1:25367008-25367027 | Msa0725640:CDS | 40.0% | |
| CTTCATTTCACTGCCTTCTT+TGG | + | chr5_1:25367024-25367043 | None:intergenic | 40.0% | |
| CAAAGAAGGCAGTGAAATGA+AGG | - | chr5_1:25367022-25367041 | Msa0725640:CDS | 40.0% | |
| AAGGCAGTGAAATGAAGGAA+AGG | - | chr5_1:25367027-25367046 | Msa0725640:CDS | 40.0% | |
| CTTGCTTTCTCGGAAAACAG+TGG | + | chr5_1:25366049-25366068 | None:intergenic | 45.0% | |
| TCTCAATCAACCCATGGCAT+GGG | + | chr5_1:25366124-25366143 | None:intergenic | 45.0% | |
| !! | TCTTCCATGTTTGGTGGTGA+AGG | - | chr5_1:25366173-25366192 | Msa0725640:intron | 45.0% |
| CTTTCCATGGATGACCCAAA+TGG | - | chr5_1:25366227-25366246 | Msa0725640:intron | 45.0% | |
| GCTATTCTCAGGTGTCAGTT+GGG | - | chr5_1:25366274-25366293 | Msa0725640:intron | 45.0% | |
| CTATTCTCAGGTGTCAGTTG+GGG | - | chr5_1:25366275-25366294 | Msa0725640:intron | 45.0% | |
| AACCAATTCCAAGCACAAGG+AGG | + | chr5_1:25366817-25366836 | None:intergenic | 45.0% | |
| CTTGCTTTCTCGGAAAACAG+TGG | + | chr5_1:25366049-25366068 | None:intergenic | 45.0% | |
| TCTCAATCAACCCATGGCAT+GGG | + | chr5_1:25366124-25366143 | None:intergenic | 45.0% | |
| !! | TCTTCCATGTTTGGTGGTGA+AGG | - | chr5_1:25366173-25366192 | Msa0725640:intron | 45.0% |
| CTTTCCATGGATGACCCAAA+TGG | - | chr5_1:25366227-25366246 | Msa0725640:intron | 45.0% | |
| GCTATTCTCAGGTGTCAGTT+GGG | - | chr5_1:25366274-25366293 | Msa0725640:intron | 45.0% | |
| CTATTCTCAGGTGTCAGTTG+GGG | - | chr5_1:25366275-25366294 | Msa0725640:intron | 45.0% | |
| AACCAATTCCAAGCACAAGG+AGG | + | chr5_1:25366817-25366836 | None:intergenic | 45.0% | |
| !!! | TAAGAAATATTTAATTTAAA+TGG | - | chr5_1:25366364-25366383 | Msa0725640:intron | 5.0% |
| !!! | TAAGAAATATTTAATTTAAA+TGG | - | chr5_1:25366364-25366383 | Msa0725640:intron | 5.0% |
| AAAGTGGGATCTTCTCGCAG+AGG | + | chr5_1:25365984-25366003 | None:intergenic | 50.0% | |
| CTCAATCAACCCATGGCATG+GGG | + | chr5_1:25366123-25366142 | None:intergenic | 50.0% | |
| GTCTCAATCAACCCATGGCA+TGG | + | chr5_1:25366125-25366144 | None:intergenic | 50.0% | |
| AGGACCTTCACCACCAAACA+TGG | + | chr5_1:25366180-25366199 | None:intergenic | 50.0% | |
| GGCTATTCTCAGGTGTCAGT+TGG | - | chr5_1:25366273-25366292 | Msa0725640:intron | 50.0% | |
| AAGCACAAGGAGGTGGAAAG+AGG | + | chr5_1:25366807-25366826 | None:intergenic | 50.0% | |
| TCTTTCCACCTCCTTGTGCT+TGG | - | chr5_1:25366806-25366825 | Msa0725640:CDS | 50.0% | |
| CAATTCCAAGCACAAGGAGG+TGG | + | chr5_1:25366814-25366833 | None:intergenic | 50.0% | |
| CACCTCCTTGTGCTTGGAAT+TGG | - | chr5_1:25366812-25366831 | Msa0725640:CDS | 50.0% | |
| AAAGTGGGATCTTCTCGCAG+AGG | + | chr5_1:25365984-25366003 | None:intergenic | 50.0% | |
| CTCAATCAACCCATGGCATG+GGG | + | chr5_1:25366123-25366142 | None:intergenic | 50.0% | |
| GTCTCAATCAACCCATGGCA+TGG | + | chr5_1:25366125-25366144 | None:intergenic | 50.0% | |
| AGGACCTTCACCACCAAACA+TGG | + | chr5_1:25366180-25366199 | None:intergenic | 50.0% | |
| GGCTATTCTCAGGTGTCAGT+TGG | - | chr5_1:25366273-25366292 | Msa0725640:intron | 50.0% | |
| AAGCACAAGGAGGTGGAAAG+AGG | + | chr5_1:25366807-25366826 | None:intergenic | 50.0% | |
| TCTTTCCACCTCCTTGTGCT+TGG | - | chr5_1:25366806-25366825 | Msa0725640:CDS | 50.0% | |
| CAATTCCAAGCACAAGGAGG+TGG | + | chr5_1:25366814-25366833 | None:intergenic | 50.0% | |
| CACCTCCTTGTGCTTGGAAT+TGG | - | chr5_1:25366812-25366831 | Msa0725640:CDS | 50.0% | |
| GCTCAGGGCTCTTGCTTTCT+CGG | + | chr5_1:25366059-25366078 | None:intergenic | 55.0% | |
| GCTGAACTTCCCCATGCCAT+GGG | - | chr5_1:25366111-25366130 | Msa0725640:intron | 55.0% | |
| GCTCAGGGCTCTTGCTTTCT+CGG | + | chr5_1:25366059-25366078 | None:intergenic | 55.0% | |
| GCTGAACTTCCCCATGCCAT+GGG | - | chr5_1:25366111-25366130 | Msa0725640:intron | 55.0% | |
| GGCTGAACTTCCCCATGCCA+TGG | - | chr5_1:25366110-25366129 | Msa0725640:intron | 60.0% | |
| GGCTGAACTTCCCCATGCCA+TGG | - | chr5_1:25366110-25366129 | Msa0725640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25365967 | 25367070 | 25365967 | ID=Msa0725640;Name=Msa0725640 |
| chr5_1 | mRNA | 25365967 | 25367070 | 25365967 | ID=Msa0725640-mRNA-1;Parent=Msa0725640;Name=Msa0725640-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0|0|3|0|111 |
| chr5_1 | exon | 25366905 | 25367070 | 25366905 | ID=Msa0725640-mRNA-1:exon:9197;Parent=Msa0725640-mRNA-1 |
| chr5_1 | exon | 25366789 | 25366842 | 25366789 | ID=Msa0725640-mRNA-1:exon:9196;Parent=Msa0725640-mRNA-1 |
| chr5_1 | exon | 25365967 | 25366082 | 25365967 | ID=Msa0725640-mRNA-1:exon:9195;Parent=Msa0725640-mRNA-1 |
| chr5_1 | CDS | 25366905 | 25367070 | 25366905 | ID=Msa0725640-mRNA-1:cds;Parent=Msa0725640-mRNA-1 |
| chr5_1 | CDS | 25366789 | 25366842 | 25366789 | ID=Msa0725640-mRNA-1:cds;Parent=Msa0725640-mRNA-1 |
| chr5_1 | CDS | 25365967 | 25366082 | 25365967 | ID=Msa0725640-mRNA-1:cds;Parent=Msa0725640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
