Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845740 | AES96743.1 | 94.286 | 35 | 2 | 0 | 1 | 35 | 787 | 821 | 2.05e-12 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845740 | G7KF97 | 94.286 | 35 | 2 | 0 | 1 | 35 | 787 | 821 | 9.81e-13 | 73.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0725640 | Msa0845740 | 0.862490 | 4.885763e-64 | -8.615850e-47 |
| Msa0725650 | Msa0845740 | 0.923525 | 2.366338e-89 | -8.615850e-47 |
| Msa0835510 | Msa0845740 | 0.803528 | 3.339679e-49 | -8.615850e-47 |
| Msa0409820 | Msa0845740 | 0.804470 | 2.126816e-49 | -8.615850e-47 |
| Msa0458790 | Msa0845740 | 0.810165 | 1.320003e-50 | -8.615850e-47 |
| Msa0845730 | Msa0845740 | 0.847508 | 1.106209e-59 | -8.615850e-47 |
| Msa0845740 | Msa0985430 | 0.821051 | 4.957536e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845740 | MtrunA17_Chr1g0155991 | 80.000 | 35 | 7 | 0 | 1 | 35 | 915 | 949 | 7.63e-13 | 63.9 |
| Msa0845740 | MtrunA17_Chr1g0155321 | 80.000 | 35 | 7 | 0 | 1 | 35 | 913 | 947 | 4.63e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAATTACTGAAATCTTT+AGG | 0.200561 | 5_4:+25091769 | None:intergenic |
| AGTATTTACCAGAGAAAATA+TGG | 0.209924 | 5_4:-25093170 | Msa0845740:CDS |
| CAGGCTTTAGCTTAGTTCTT+TGG | 0.233463 | 5_4:-25092382 | Msa0845740:CDS |
| AATAATTACTGAAATCTTTA+GGG | 0.272120 | 5_4:+25091770 | None:intergenic |
| TTCTCACATTCTTCAGATAA+AGG | 0.289924 | 5_4:+25091739 | None:intergenic |
| CAACCTTGCTTTGAAGCATC+TGG | 0.330999 | 5_4:-25093217 | Msa0845740:CDS |
| TTTACTCCGGAGCTCATTCT+TGG | 0.331949 | 5_4:+25092350 | None:intergenic |
| TCACCATGGTTCTCCCTCTC+TGG | 0.365790 | 5_4:+25092000 | None:intergenic |
| GCAAGGTTGAAGGGTTCATT+TGG | 0.379753 | 5_4:+25093231 | None:intergenic |
| ATCAAGATTTCACCATCATT+AGG | 0.411314 | 5_4:+25092036 | None:intergenic |
| TTACTCCGGAGCTCATTCTT+GGG | 0.465313 | 5_4:+25092351 | None:intergenic |
| ATTTCACCATCATTAGGATC+AGG | 0.488983 | 5_4:+25092042 | None:intergenic |
| ATGCTTCAAAGCAAGGTTGA+AGG | 0.504967 | 5_4:+25093221 | None:intergenic |
| AAAAGATCTTTCATTTACTC+CGG | 0.507556 | 5_4:+25092337 | None:intergenic |
| CCGGAGCTCATTCTTGGGAA+AGG | 0.512386 | 5_4:+25092356 | None:intergenic |
| CTCTGGTAAATACTCAAGCT+CGG | 0.532969 | 5_4:+25093179 | None:intergenic |
| GTATTTACCAGAGAAAATAT+GGG | 0.533584 | 5_4:-25093169 | Msa0845740:CDS |
| TATCCAGATGCTTCAAAGCA+AGG | 0.547330 | 5_4:+25093214 | None:intergenic |
| TGCTTCAAAGCAAGGTTGAA+GGG | 0.548519 | 5_4:+25093222 | None:intergenic |
| TTCTTCAGATAAAGGTTCAA+CGG | 0.577865 | 5_4:+25091747 | None:intergenic |
| CCTTTCCCAAGAATGAGCTC+CGG | 0.589503 | 5_4:-25092356 | Msa0845740:CDS |
| ACTCTACCTGATCCTAATGA+TGG | 0.592278 | 5_4:-25092048 | Msa0845740:CDS |
| TATCTGAAGAATGTGAGAAG+AGG | 0.621701 | 5_4:-25091735 | Msa0845740:CDS |
| TCATTATGCGAAGCCAGAGA+GGG | 0.639171 | 5_4:-25092013 | Msa0845740:CDS |
| TTCATTATGCGAAGCCAGAG+AGG | 0.662945 | 5_4:-25092014 | Msa0845740:CDS |
| TATTTACCAGAGAAAATATG+GGG | 0.676075 | 5_4:-25093168 | Msa0845740:CDS |
| AAGCCAGAGAGGGAGAACCA+TGG | 0.676428 | 5_4:-25092003 | Msa0845740:CDS |
| TAACTGATGATCTGTCACCA+TGG | 0.695466 | 5_4:+25091986 | None:intergenic |
| TTACCAGAGAAAATATGGGG+AGG | 0.706905 | 5_4:-25093165 | Msa0845740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAAATGATATAAAAA+AGG | + | chr5_4:25092407-25092426 | None:intergenic | 10.0% |
| !! | AATATGAAATGATATAAAAA+AGG | + | chr5_4:25092407-25092426 | None:intergenic | 10.0% |
| !! | AATAATTACTGAAATCTTTA+GGG | + | chr5_4:25093196-25093215 | None:intergenic | 15.0% |
| !! | AATAATTACTGAAATCTTTA+GGG | + | chr5_4:25093196-25093215 | None:intergenic | 15.0% |
| !!! | TTTTGATTGTGTTTCTTTTA+GGG | - | chr5_4:25092159-25092178 | Msa0845740:intron | 20.0% |
| !!! | TTTTTCAAATTAAGATTGCT+AGG | + | chr5_4:25092364-25092383 | None:intergenic | 20.0% |
| !!! | TACTGTTATCTTTTTATTCA+TGG | + | chr5_4:25093110-25093129 | None:intergenic | 20.0% |
| !! | GAATAATTACTGAAATCTTT+AGG | + | chr5_4:25093197-25093216 | None:intergenic | 20.0% |
| !!! | TTTTGATTGTGTTTCTTTTA+GGG | - | chr5_4:25092159-25092178 | Msa0845740:intron | 20.0% |
| !!! | TTTTTCAAATTAAGATTGCT+AGG | + | chr5_4:25092364-25092383 | None:intergenic | 20.0% |
| !!! | TACTGTTATCTTTTTATTCA+TGG | + | chr5_4:25093110-25093129 | None:intergenic | 20.0% |
| !! | GAATAATTACTGAAATCTTT+AGG | + | chr5_4:25093197-25093216 | None:intergenic | 20.0% |
| ! | AGTATTTACCAGAGAAAATA+TGG | - | chr5_4:25091793-25091812 | Msa0845740:CDS | 25.0% |
| ! | GTATTTACCAGAGAAAATAT+GGG | - | chr5_4:25091794-25091813 | Msa0845740:CDS | 25.0% |
| ! | TATTTACCAGAGAAAATATG+GGG | - | chr5_4:25091795-25091814 | Msa0845740:CDS | 25.0% |
| ! | CTAAAAGAAACACAATCAAA+AGG | + | chr5_4:25092160-25092179 | None:intergenic | 25.0% |
| !!! | CTTTTGATTGTGTTTCTTTT+AGG | - | chr5_4:25092158-25092177 | Msa0845740:intron | 25.0% |
| ! | TTTCTTGTACAATGTTATAC+CGG | - | chr5_4:25092480-25092499 | Msa0845740:intron | 25.0% |
| ! | ATGAGAATCTGTTACAAATT+TGG | + | chr5_4:25092546-25092565 | None:intergenic | 25.0% |
| !! | TCATTATGAAATGATTTTGC+AGG | - | chr5_4:25092562-25092581 | Msa0845740:intron | 25.0% |
| ! | AAAAGATCTTTCATTTACTC+CGG | + | chr5_4:25092629-25092648 | None:intergenic | 25.0% |
| !! | GTAAATGAAAGATCTTTTAC+TGG | - | chr5_4:25092631-25092650 | Msa0845740:intron | 25.0% |
| !!! | TGAGTTCATTATCTTTTTCA+AGG | - | chr5_4:25092683-25092702 | Msa0845740:intron | 25.0% |
| !! | ATAGATGCAAGTCTTAATTT+TGG | - | chr5_4:25092832-25092851 | Msa0845740:intron | 25.0% |
| !! | AGTCTTAATTTTGGATGATA+TGG | - | chr5_4:25092841-25092860 | Msa0845740:intron | 25.0% |
| !! | GTCTTAATTTTGGATGATAT+GGG | - | chr5_4:25092842-25092861 | Msa0845740:intron | 25.0% |
| ! | AGTATTTACCAGAGAAAATA+TGG | - | chr5_4:25091793-25091812 | Msa0845740:CDS | 25.0% |
| ! | GTATTTACCAGAGAAAATAT+GGG | - | chr5_4:25091794-25091813 | Msa0845740:CDS | 25.0% |
| ! | TATTTACCAGAGAAAATATG+GGG | - | chr5_4:25091795-25091814 | Msa0845740:CDS | 25.0% |
| ! | CTAAAAGAAACACAATCAAA+AGG | + | chr5_4:25092160-25092179 | None:intergenic | 25.0% |
| !!! | CTTTTGATTGTGTTTCTTTT+AGG | - | chr5_4:25092158-25092177 | Msa0845740:intron | 25.0% |
| ! | TTTCTTGTACAATGTTATAC+CGG | - | chr5_4:25092480-25092499 | Msa0845740:intron | 25.0% |
| ! | ATGAGAATCTGTTACAAATT+TGG | + | chr5_4:25092546-25092565 | None:intergenic | 25.0% |
| !! | TCATTATGAAATGATTTTGC+AGG | - | chr5_4:25092562-25092581 | Msa0845740:intron | 25.0% |
| ! | AAAAGATCTTTCATTTACTC+CGG | + | chr5_4:25092629-25092648 | None:intergenic | 25.0% |
| !! | GTAAATGAAAGATCTTTTAC+TGG | - | chr5_4:25092631-25092650 | Msa0845740:intron | 25.0% |
| !!! | TGAGTTCATTATCTTTTTCA+AGG | - | chr5_4:25092683-25092702 | Msa0845740:intron | 25.0% |
| !! | ATAGATGCAAGTCTTAATTT+TGG | - | chr5_4:25092832-25092851 | Msa0845740:intron | 25.0% |
| !! | AGTCTTAATTTTGGATGATA+TGG | - | chr5_4:25092841-25092860 | Msa0845740:intron | 25.0% |
| !! | GTCTTAATTTTGGATGATAT+GGG | - | chr5_4:25092842-25092861 | Msa0845740:intron | 25.0% |
| TAGGAAATTAAAATGCTTGC+CGG | - | chr5_4:25091857-25091876 | Msa0845740:intron | 30.0% | |
| ! | CTTGACTAGTTGACTATTTA+TGG | - | chr5_4:25092038-25092057 | Msa0845740:CDS | 30.0% |
| GTTTAAGAGCAACAAACAAA+GGG | + | chr5_4:25092111-25092130 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGTTGCTCTTAAA+CGG | - | chr5_4:25092110-25092129 | Msa0845740:intron | 30.0% |
| ! | TTTGTTTGTTGCTCTTAAAC+GGG | - | chr5_4:25092111-25092130 | Msa0845740:intron | 30.0% |
| AAGAAACACAATCAAAAGGT+TGG | + | chr5_4:25092156-25092175 | None:intergenic | 30.0% | |
| CAAAACGATAGTTACTAAGT+AGG | + | chr5_4:25092252-25092271 | None:intergenic | 30.0% | |
| TTGTACAAGAAACAGACAAT+AGG | + | chr5_4:25092472-25092491 | None:intergenic | 30.0% | |
| GAACTCACTTATAAAAACTC+TGG | + | chr5_4:25092670-25092689 | None:intergenic | 30.0% | |
| !! | TTTGAATTAATTGACTCGCA+TGG | - | chr5_4:25092720-25092739 | Msa0845740:intron | 30.0% |
| !! | TCGCATGGTATTGATAAAAA+TGG | - | chr5_4:25092735-25092754 | Msa0845740:intron | 30.0% |
| ! | TTTTGGATGATATGGGTATT+AGG | - | chr5_4:25092849-25092868 | Msa0845740:intron | 30.0% |
| ATCAAGATTTCACCATCATT+AGG | + | chr5_4:25092930-25092949 | None:intergenic | 30.0% | |
| TTCTTCAGATAAAGGTTCAA+CGG | + | chr5_4:25093219-25093238 | None:intergenic | 30.0% | |
| TTCTCACATTCTTCAGATAA+AGG | + | chr5_4:25093227-25093246 | None:intergenic | 30.0% | |
| TAGGAAATTAAAATGCTTGC+CGG | - | chr5_4:25091857-25091876 | Msa0845740:intron | 30.0% | |
| ! | CTTGACTAGTTGACTATTTA+TGG | - | chr5_4:25092038-25092057 | Msa0845740:CDS | 30.0% |
| GTTTAAGAGCAACAAACAAA+GGG | + | chr5_4:25092111-25092130 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGTTGCTCTTAAA+CGG | - | chr5_4:25092110-25092129 | Msa0845740:intron | 30.0% |
| ! | TTTGTTTGTTGCTCTTAAAC+GGG | - | chr5_4:25092111-25092130 | Msa0845740:intron | 30.0% |
| AAGAAACACAATCAAAAGGT+TGG | + | chr5_4:25092156-25092175 | None:intergenic | 30.0% | |
| CAAAACGATAGTTACTAAGT+AGG | + | chr5_4:25092252-25092271 | None:intergenic | 30.0% | |
| TTGTACAAGAAACAGACAAT+AGG | + | chr5_4:25092472-25092491 | None:intergenic | 30.0% | |
| GAACTCACTTATAAAAACTC+TGG | + | chr5_4:25092670-25092689 | None:intergenic | 30.0% | |
| !! | TTTGAATTAATTGACTCGCA+TGG | - | chr5_4:25092720-25092739 | Msa0845740:intron | 30.0% |
| !! | TCGCATGGTATTGATAAAAA+TGG | - | chr5_4:25092735-25092754 | Msa0845740:intron | 30.0% |
| ! | TTTTGGATGATATGGGTATT+AGG | - | chr5_4:25092849-25092868 | Msa0845740:intron | 30.0% |
| ATCAAGATTTCACCATCATT+AGG | + | chr5_4:25092930-25092949 | None:intergenic | 30.0% | |
| TTCTTCAGATAAAGGTTCAA+CGG | + | chr5_4:25093219-25093238 | None:intergenic | 30.0% | |
| TTCTCACATTCTTCAGATAA+AGG | + | chr5_4:25093227-25093246 | None:intergenic | 30.0% | |
| TCTGCAATCACTTCAATCTA+TGG | - | chr5_4:25091821-25091840 | Msa0845740:intron | 35.0% | |
| CTATGGTGATTGTTGAATGT+AGG | - | chr5_4:25091838-25091857 | Msa0845740:intron | 35.0% | |
| AAATTAAAATGCTTGCCGGA+CGG | - | chr5_4:25091861-25091880 | Msa0845740:intron | 35.0% | |
| TTAATGAATCAAGTGCAGTG+AGG | + | chr5_4:25091896-25091915 | None:intergenic | 35.0% | |
| !! | AATGTGCAGTTCTGGAATAT+GGG | + | chr5_4:25091988-25092007 | None:intergenic | 35.0% |
| !! | AAATGTGCAGTTCTGGAATA+TGG | + | chr5_4:25091989-25092008 | None:intergenic | 35.0% |
| TCATTCTAAATGTGCAGTTC+TGG | + | chr5_4:25091996-25092015 | None:intergenic | 35.0% | |
| CGTTTAAGAGCAACAAACAA+AGG | + | chr5_4:25092112-25092131 | None:intergenic | 35.0% | |
| AACACAATCAAAAGGTTGGA+GGG | + | chr5_4:25092152-25092171 | None:intergenic | 35.0% | |
| AAACACAATCAAAAGGTTGG+AGG | + | chr5_4:25092153-25092172 | None:intergenic | 35.0% | |
| !!! | GATTGTGTTTCTTTTAGGGT+TGG | - | chr5_4:25092163-25092182 | Msa0845740:intron | 35.0% |
| !!! | TGTTTCTTTTAGGGTTGGTT+TGG | - | chr5_4:25092168-25092187 | Msa0845740:intron | 35.0% |
| GACTTGAAATCTAAGAAAGC+CGG | + | chr5_4:25092502-25092521 | None:intergenic | 35.0% | |
| ! | ATTTCAAGTCCTCAATTGAC+TGG | - | chr5_4:25092512-25092531 | Msa0845740:intron | 35.0% |
| GAATGAAAACCAGTCAATTG+AGG | + | chr5_4:25092524-25092543 | None:intergenic | 35.0% | |
| ATTTCACCATCATTAGGATC+AGG | + | chr5_4:25092924-25092943 | None:intergenic | 35.0% | |
| TATCTGAAGAATGTGAGAAG+AGG | - | chr5_4:25093228-25093247 | Msa0845740:CDS | 35.0% | |
| TCTGCAATCACTTCAATCTA+TGG | - | chr5_4:25091821-25091840 | Msa0845740:intron | 35.0% | |
| CTATGGTGATTGTTGAATGT+AGG | - | chr5_4:25091838-25091857 | Msa0845740:intron | 35.0% | |
| AAATTAAAATGCTTGCCGGA+CGG | - | chr5_4:25091861-25091880 | Msa0845740:intron | 35.0% | |
| TTAATGAATCAAGTGCAGTG+AGG | + | chr5_4:25091896-25091915 | None:intergenic | 35.0% | |
| !! | AATGTGCAGTTCTGGAATAT+GGG | + | chr5_4:25091988-25092007 | None:intergenic | 35.0% |
| !! | AAATGTGCAGTTCTGGAATA+TGG | + | chr5_4:25091989-25092008 | None:intergenic | 35.0% |
| TCATTCTAAATGTGCAGTTC+TGG | + | chr5_4:25091996-25092015 | None:intergenic | 35.0% | |
| CGTTTAAGAGCAACAAACAA+AGG | + | chr5_4:25092112-25092131 | None:intergenic | 35.0% | |
| AACACAATCAAAAGGTTGGA+GGG | + | chr5_4:25092152-25092171 | None:intergenic | 35.0% | |
| AAACACAATCAAAAGGTTGG+AGG | + | chr5_4:25092153-25092172 | None:intergenic | 35.0% | |
| !!! | GATTGTGTTTCTTTTAGGGT+TGG | - | chr5_4:25092163-25092182 | Msa0845740:intron | 35.0% |
| !!! | TGTTTCTTTTAGGGTTGGTT+TGG | - | chr5_4:25092168-25092187 | Msa0845740:intron | 35.0% |
| GACTTGAAATCTAAGAAAGC+CGG | + | chr5_4:25092502-25092521 | None:intergenic | 35.0% | |
| ! | ATTTCAAGTCCTCAATTGAC+TGG | - | chr5_4:25092512-25092531 | Msa0845740:intron | 35.0% |
| GAATGAAAACCAGTCAATTG+AGG | + | chr5_4:25092524-25092543 | None:intergenic | 35.0% | |
| ATTTCACCATCATTAGGATC+AGG | + | chr5_4:25092924-25092943 | None:intergenic | 35.0% | |
| TATCTGAAGAATGTGAGAAG+AGG | - | chr5_4:25093228-25093247 | Msa0845740:CDS | 35.0% | |
| TGCTTCAAAGCAAGGTTGAA+GGG | + | chr5_4:25091744-25091763 | None:intergenic | 40.0% | |
| ATGCTTCAAAGCAAGGTTGA+AGG | + | chr5_4:25091745-25091764 | None:intergenic | 40.0% | |
| TATCCAGATGCTTCAAAGCA+AGG | + | chr5_4:25091752-25091771 | None:intergenic | 40.0% | |
| CTCTGGTAAATACTCAAGCT+CGG | + | chr5_4:25091787-25091806 | None:intergenic | 40.0% | |
| TTACCAGAGAAAATATGGGG+AGG | - | chr5_4:25091798-25091817 | Msa0845740:CDS | 40.0% | |
| ! | CAGGCTTTAGCTTAGTTCTT+TGG | - | chr5_4:25092581-25092600 | Msa0845740:intron | 40.0% |
| ACTCTACCTGATCCTAATGA+TGG | - | chr5_4:25092915-25092934 | Msa0845740:intron | 40.0% | |
| TAACTGATGATCTGTCACCA+TGG | + | chr5_4:25092980-25092999 | None:intergenic | 40.0% | |
| ! | GGTTGTTATTACCTGTGTTG+GGG | + | chr5_4:25093029-25093048 | None:intergenic | 40.0% |
| ! | GGGTTGTTATTACCTGTGTT+GGG | + | chr5_4:25093030-25093049 | None:intergenic | 40.0% |
| ! | AGGGTTGTTATTACCTGTGT+TGG | + | chr5_4:25093031-25093050 | None:intergenic | 40.0% |
| TGCTTCAAAGCAAGGTTGAA+GGG | + | chr5_4:25091744-25091763 | None:intergenic | 40.0% | |
| ATGCTTCAAAGCAAGGTTGA+AGG | + | chr5_4:25091745-25091764 | None:intergenic | 40.0% | |
| TATCCAGATGCTTCAAAGCA+AGG | + | chr5_4:25091752-25091771 | None:intergenic | 40.0% | |
| CTCTGGTAAATACTCAAGCT+CGG | + | chr5_4:25091787-25091806 | None:intergenic | 40.0% | |
| TTACCAGAGAAAATATGGGG+AGG | - | chr5_4:25091798-25091817 | Msa0845740:CDS | 40.0% | |
| ! | CAGGCTTTAGCTTAGTTCTT+TGG | - | chr5_4:25092581-25092600 | Msa0845740:intron | 40.0% |
| ACTCTACCTGATCCTAATGA+TGG | - | chr5_4:25092915-25092934 | Msa0845740:intron | 40.0% | |
| TAACTGATGATCTGTCACCA+TGG | + | chr5_4:25092980-25092999 | None:intergenic | 40.0% | |
| ! | GGTTGTTATTACCTGTGTTG+GGG | + | chr5_4:25093029-25093048 | None:intergenic | 40.0% |
| ! | GGGTTGTTATTACCTGTGTT+GGG | + | chr5_4:25093030-25093049 | None:intergenic | 40.0% |
| ! | AGGGTTGTTATTACCTGTGT+TGG | + | chr5_4:25093031-25093050 | None:intergenic | 40.0% |
| GCAAGGTTGAAGGGTTCATT+TGG | + | chr5_4:25091735-25091754 | None:intergenic | 45.0% | |
| !! | CAACCTTGCTTTGAAGCATC+TGG | - | chr5_4:25091746-25091765 | Msa0845740:CDS | 45.0% |
| ! | AGACCTCCCCATATTTTCTC+TGG | + | chr5_4:25091804-25091823 | None:intergenic | 45.0% |
| TATACGTGCATGCCCAACAT+TGG | - | chr5_4:25091917-25091936 | Msa0845740:intron | 45.0% | |
| TGCATCGCATCTCCAATGTT+GGG | + | chr5_4:25091932-25091951 | None:intergenic | 45.0% | |
| TTGCATCGCATCTCCAATGT+TGG | + | chr5_4:25091933-25091952 | None:intergenic | 45.0% | |
| ATTGGAGATGCGATGCAATG+AGG | - | chr5_4:25091935-25091954 | Msa0845740:intron | 45.0% | |
| TTGGAGATGCGATGCAATGA+GGG | - | chr5_4:25091936-25091955 | Msa0845740:intron | 45.0% | |
| TATCTTGTCCCAGTCTTCTC+CGG | + | chr5_4:25091964-25091983 | None:intergenic | 45.0% | |
| !! | AAAGGGAGCGTCAATAGTGA+GGG | + | chr5_4:25092094-25092113 | None:intergenic | 45.0% |
| TTACTCCGGAGCTCATTCTT+GGG | + | chr5_4:25092615-25092634 | None:intergenic | 45.0% | |
| TTTACTCCGGAGCTCATTCT+TGG | + | chr5_4:25092616-25092635 | None:intergenic | 45.0% | |
| TTCATTATGCGAAGCCAGAG+AGG | - | chr5_4:25092949-25092968 | Msa0845740:intron | 45.0% | |
| TCATTATGCGAAGCCAGAGA+GGG | - | chr5_4:25092950-25092969 | Msa0845740:intron | 45.0% | |
| AACAACCCTTCCATGCTTGA+TGG | - | chr5_4:25093042-25093061 | Msa0845740:intron | 45.0% | |
| TCTGTCCATCAAGCATGGAA+GGG | + | chr5_4:25093050-25093069 | None:intergenic | 45.0% | |
| TCAAGTCTGTCCATCAAGCA+TGG | + | chr5_4:25093055-25093074 | None:intergenic | 45.0% | |
| GCAAGGTTGAAGGGTTCATT+TGG | + | chr5_4:25091735-25091754 | None:intergenic | 45.0% | |
| !! | CAACCTTGCTTTGAAGCATC+TGG | - | chr5_4:25091746-25091765 | Msa0845740:CDS | 45.0% |
| ! | AGACCTCCCCATATTTTCTC+TGG | + | chr5_4:25091804-25091823 | None:intergenic | 45.0% |
| TATACGTGCATGCCCAACAT+TGG | - | chr5_4:25091917-25091936 | Msa0845740:intron | 45.0% | |
| TGCATCGCATCTCCAATGTT+GGG | + | chr5_4:25091932-25091951 | None:intergenic | 45.0% | |
| TTGCATCGCATCTCCAATGT+TGG | + | chr5_4:25091933-25091952 | None:intergenic | 45.0% | |
| ATTGGAGATGCGATGCAATG+AGG | - | chr5_4:25091935-25091954 | Msa0845740:intron | 45.0% | |
| TTGGAGATGCGATGCAATGA+GGG | - | chr5_4:25091936-25091955 | Msa0845740:intron | 45.0% | |
| TATCTTGTCCCAGTCTTCTC+CGG | + | chr5_4:25091964-25091983 | None:intergenic | 45.0% | |
| !! | AAAGGGAGCGTCAATAGTGA+GGG | + | chr5_4:25092094-25092113 | None:intergenic | 45.0% |
| TTACTCCGGAGCTCATTCTT+GGG | + | chr5_4:25092615-25092634 | None:intergenic | 45.0% | |
| TTTACTCCGGAGCTCATTCT+TGG | + | chr5_4:25092616-25092635 | None:intergenic | 45.0% | |
| TTCATTATGCGAAGCCAGAG+AGG | - | chr5_4:25092949-25092968 | Msa0845740:intron | 45.0% | |
| TCATTATGCGAAGCCAGAGA+GGG | - | chr5_4:25092950-25092969 | Msa0845740:intron | 45.0% | |
| AACAACCCTTCCATGCTTGA+TGG | - | chr5_4:25093042-25093061 | Msa0845740:intron | 45.0% | |
| TCTGTCCATCAAGCATGGAA+GGG | + | chr5_4:25093050-25093069 | None:intergenic | 45.0% | |
| TCAAGTCTGTCCATCAAGCA+TGG | + | chr5_4:25093055-25093074 | None:intergenic | 45.0% | |
| !! | AAAACAAATAAATTAATTAA+AGG | + | chr5_4:25092882-25092901 | None:intergenic | 5.0% |
| !! | AAAACAAATAAATTAATTAA+AGG | + | chr5_4:25092882-25092901 | None:intergenic | 5.0% |
| ! | GTGAGGTGTCTAATACCGTC+CGG | + | chr5_4:25091879-25091898 | None:intergenic | 50.0% |
| ATGCGATGCAATGAGGGAAC+CGG | - | chr5_4:25091942-25091961 | Msa0845740:intron | 50.0% | |
| !! | CAAAGGGAGCGTCAATAGTG+AGG | + | chr5_4:25092095-25092114 | None:intergenic | 50.0% |
| CCTTTCCCAAGAATGAGCTC+CGG | - | chr5_4:25092607-25092626 | Msa0845740:intron | 50.0% | |
| GTCTGTCCATCAAGCATGGA+AGG | + | chr5_4:25093051-25093070 | None:intergenic | 50.0% | |
| ! | GTGAGGTGTCTAATACCGTC+CGG | + | chr5_4:25091879-25091898 | None:intergenic | 50.0% |
| ATGCGATGCAATGAGGGAAC+CGG | - | chr5_4:25091942-25091961 | Msa0845740:intron | 50.0% | |
| !! | CAAAGGGAGCGTCAATAGTG+AGG | + | chr5_4:25092095-25092114 | None:intergenic | 50.0% |
| CCTTTCCCAAGAATGAGCTC+CGG | - | chr5_4:25092607-25092626 | Msa0845740:intron | 50.0% | |
| GTCTGTCCATCAAGCATGGA+AGG | + | chr5_4:25093051-25093070 | None:intergenic | 50.0% | |
| ATGAGGGAACCGGAGAAGAC+TGG | - | chr5_4:25091952-25091971 | Msa0845740:intron | 55.0% | |
| TGAGGGAACCGGAGAAGACT+GGG | - | chr5_4:25091953-25091972 | Msa0845740:intron | 55.0% | |
| CCGGAGCTCATTCTTGGGAA+AGG | + | chr5_4:25092610-25092629 | None:intergenic | 55.0% | |
| AAGCCAGAGAGGGAGAACCA+TGG | - | chr5_4:25092960-25092979 | Msa0845740:intron | 55.0% | |
| TCACCATGGTTCTCCCTCTC+TGG | + | chr5_4:25092966-25092985 | None:intergenic | 55.0% | |
| ATGAGGGAACCGGAGAAGAC+TGG | - | chr5_4:25091952-25091971 | Msa0845740:intron | 55.0% | |
| TGAGGGAACCGGAGAAGACT+GGG | - | chr5_4:25091953-25091972 | Msa0845740:intron | 55.0% | |
| CCGGAGCTCATTCTTGGGAA+AGG | + | chr5_4:25092610-25092629 | None:intergenic | 55.0% | |
| AAGCCAGAGAGGGAGAACCA+TGG | - | chr5_4:25092960-25092979 | Msa0845740:intron | 55.0% | |
| TCACCATGGTTCTCCCTCTC+TGG | + | chr5_4:25092966-25092985 | None:intergenic | 55.0% | |
| CTCAAGCTTCGCCCCAACAC+AGG | - | chr5_4:25093015-25093034 | Msa0845740:intron | 60.0% | |
| CTCAAGCTTCGCCCCAACAC+AGG | - | chr5_4:25093015-25093034 | Msa0845740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 25091720 | 25093265 | 25091720 | ID=Msa0845740;Name=Msa0845740 |
| chr5_4 | mRNA | 25091720 | 25093265 | 25091720 | ID=Msa0845740-mRNA-1;Parent=Msa0845740;Name=Msa0845740-mRNA-1;_AED=0.87;_eAED=1.00;_QI=0|0|0|0.25|0.66|0.75|4|0|122 |
| chr5_4 | exon | 25093166 | 25093265 | 25093166 | ID=Msa0845740-mRNA-1:exon:10045;Parent=Msa0845740-mRNA-1 |
| chr5_4 | exon | 25092333 | 25092401 | 25092333 | ID=Msa0845740-mRNA-1:exon:10044;Parent=Msa0845740-mRNA-1 |
| chr5_4 | exon | 25091990 | 25092078 | 25091990 | ID=Msa0845740-mRNA-1:exon:10043;Parent=Msa0845740-mRNA-1 |
| chr5_4 | exon | 25091720 | 25091830 | 25091720 | ID=Msa0845740-mRNA-1:exon:10042;Parent=Msa0845740-mRNA-1 |
| chr5_4 | CDS | 25093166 | 25093265 | 25093166 | ID=Msa0845740-mRNA-1:cds;Parent=Msa0845740-mRNA-1 |
| chr5_4 | CDS | 25092333 | 25092401 | 25092333 | ID=Msa0845740-mRNA-1:cds;Parent=Msa0845740-mRNA-1 |
| chr5_4 | CDS | 25091990 | 25092078 | 25091990 | ID=Msa0845740-mRNA-1:cds;Parent=Msa0845740-mRNA-1 |
| chr5_4 | CDS | 25091720 | 25091830 | 25091720 | ID=Msa0845740-mRNA-1:cds;Parent=Msa0845740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
