Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726780 | XP_003614024.1 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726780 | sp|Q9LMG8|SNP30_ARATH | 61.509 | 265 | 84 | 4 | 1 | 260 | 1 | 252 | 7.87e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726780 | G7JXY1 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726780 | Msa1419010 | 0.817622 | 2.997602e-52 | -8.615850e-47 |
| Msa0473240 | Msa0726780 | 0.807558 | 4.767902e-50 | -8.615850e-47 |
| Msa0253370 | Msa0726780 | 0.811463 | 6.913350e-51 | -8.615850e-47 |
| Msa0292180 | Msa0726780 | 0.808112 | 3.634522e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726780 | MtrunA17_Chr5g0418751 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 523 |
| Msa0726780 | MtrunA17_Chr4g0061281 | 55.652 | 230 | 88 | 1 | 45 | 260 | 60 | 289 | 9.35e-82 | 250 |
| Msa0726780 | MtrunA17_Chr8g0344541 | 58.416 | 202 | 84 | 0 | 62 | 263 | 18 | 219 | 1.87e-79 | 242 |
| Msa0726780 | MtrunA17_Chr3g0086301 | 55.276 | 199 | 89 | 0 | 62 | 260 | 87 | 285 | 2.00e-72 | 226 |
| Msa0726780 | MtrunA17_Chr5g0418741 | 96.429 | 84 | 3 | 0 | 260 | 343 | 18 | 101 | 3.02e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726780 | AT1G13890.1 | 61.509 | 265 | 84 | 4 | 1 | 260 | 1 | 252 | 8.00e-103 | 303 |
| Msa0726780 | AT1G13890.2 | 61.509 | 265 | 84 | 4 | 1 | 260 | 1 | 252 | 8.00e-103 | 303 |
| Msa0726780 | AT5G61210.2 | 64.646 | 198 | 70 | 0 | 62 | 259 | 91 | 288 | 4.21e-85 | 259 |
| Msa0726780 | AT5G61210.1 | 64.646 | 198 | 70 | 0 | 62 | 259 | 91 | 288 | 4.21e-85 | 259 |
| Msa0726780 | AT5G07880.2 | 53.333 | 210 | 89 | 3 | 52 | 259 | 37 | 239 | 4.15e-68 | 214 |
| Msa0726780 | AT5G07880.1 | 53.333 | 210 | 89 | 3 | 52 | 259 | 37 | 239 | 4.15e-68 | 214 |
| Msa0726780 | AT1G26600.1 | 56.140 | 57 | 22 | 2 | 289 | 343 | 65 | 120 | 1.71e-11 | 61.2 |
| Msa0726780 | AT1G26600.2 | 56.140 | 57 | 22 | 2 | 289 | 343 | 110 | 165 | 3.47e-11 | 61.6 |
Find 88 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTTCTTTGGCTTCC+AGG | 0.182763 | 5_1:+28159726 | None:intergenic |
| GCAATCTTTGATGGATTCTT+TGG | 0.189862 | 5_1:+28157330 | None:intergenic |
| CTTACTCATTACATCCTTCT+TGG | 0.197030 | 5_1:+28159469 | None:intergenic |
| GAAGGGTATGGCAATTAGTA+TGG | 0.241588 | 5_1:-28159172 | Msa0726780:CDS |
| CTTGTTTATGCAATCTTTGA+TGG | 0.248576 | 5_1:+28157321 | None:intergenic |
| GTGATCGCCTTTCCCTTCTT+TGG | 0.255426 | 5_1:+28159718 | None:intergenic |
| CTCCTACACGTGAAAATGTT+TGG | 0.317144 | 5_1:-28160257 | None:intergenic |
| ATGTAATGAGTAAGGAAGAT+AGG | 0.317440 | 5_1:-28159460 | Msa0726780:CDS |
| CTCAGAACTCAGCGATATCT+TGG | 0.328955 | 5_1:-28159202 | Msa0726780:CDS |
| GATGATCAAGAGCTTTGTTT+TGG | 0.338749 | 5_1:+28158780 | None:intergenic |
| ACATGCCACCAAGATTGTTT+AGG | 0.391915 | 5_1:+28159758 | None:intergenic |
| CGATATCTTGGGCGATTTGA+AGG | 0.397316 | 5_1:-28159190 | Msa0726780:CDS |
| TATTATGAGTCCTTGTAATC+TGG | 0.399198 | 5_1:+28159904 | None:intergenic |
| AATCAGTTGTGAAGTGGGTT+TGG | 0.400032 | 5_1:+28157230 | None:intergenic |
| GATTACAAGGACTCATAATA+TGG | 0.402221 | 5_1:-28159901 | Msa0726780:CDS |
| TGATGATGATGACGACGATT+GGG | 0.405432 | 5_1:-28160114 | Msa0726780:CDS |
| CATGGTATTGATCCAAGATT+TGG | 0.409188 | 5_1:-28157281 | Msa0726780:CDS |
| CTCTTCTCAGCACCAAATCT+TGG | 0.419698 | 5_1:+28157269 | None:intergenic |
| TACCCTACTCAAATCCTTCT+CGG | 0.421619 | 5_1:+28159869 | None:intergenic |
| ACTAGAGAATCAAAGTGTTC+AGG | 0.432628 | 5_1:-28160054 | Msa0726780:CDS |
| TCTGAAGAAGTTCGTCTAGC+TGG | 0.433799 | 5_1:+28160179 | None:intergenic |
| TAGGCGCTGTCAGACTCATT+AGG | 0.450827 | 5_1:+28159383 | None:intergenic |
| TTTCCCTTCTTTGGCTTCCA+GGG | 0.450858 | 5_1:+28159727 | None:intergenic |
| AGGGTTAGCTCCTTTGCCTA+AGG | 0.460085 | 5_1:-28159429 | Msa0726780:CDS |
| CAAGAAGGATGTAATGAGTA+AGG | 0.469224 | 5_1:-28159468 | Msa0726780:CDS |
| TCTTGACATGTTGCACCAGC+AGG | 0.471296 | 5_1:-28159931 | Msa0726780:CDS |
| AATAAAGAAGATGGTGTTGT+TGG | 0.473359 | 5_1:+28157399 | None:intergenic |
| ACAGGCCCGGTGATTACATC+AGG | 0.473489 | 5_1:-28159697 | Msa0726780:intron |
| TTGTAATCTGGTCACCCTGC+TGG | 0.476053 | 5_1:+28159916 | None:intergenic |
| GAATCAAAGTGTTCAGGAGT+TGG | 0.476538 | 5_1:-28160048 | Msa0726780:CDS |
| ATATTCGAAGTGATGCTTCA+AGG | 0.481846 | 5_1:-28159956 | Msa0726780:CDS |
| CTTGGGCGATTTGAAGGGTA+TGG | 0.482056 | 5_1:-28159184 | Msa0726780:CDS |
| GACTTTGGCACTGGTAGGAC+GGG | 0.485010 | 5_1:+28160155 | None:intergenic |
| TGTAATGAGTAAGGAAGATA+GGG | 0.489900 | 5_1:-28159459 | Msa0726780:CDS |
| GTTTCACCTTCTCATGATCA+TGG | 0.490179 | 5_1:-28157299 | Msa0726780:CDS |
| GGGAAAGGCGATCACAGGCC+CGG | 0.490693 | 5_1:-28159710 | Msa0726780:CDS |
| AAGGAAGATAGGGCAAAGCT+AGG | 0.496533 | 5_1:-28159449 | Msa0726780:CDS |
| TGAGAAGAGGCGAGTTCCTA+CGG | 0.501052 | 5_1:-28157255 | Msa0726780:CDS |
| TAAACCCTGGAAGCCAAAGA+AGG | 0.503183 | 5_1:-28159731 | Msa0726780:CDS |
| AAGAATCACAATAAAGAAGA+TGG | 0.505339 | 5_1:+28157390 | None:intergenic |
| TTTGAAGCCGATGACGATGC+AGG | 0.506193 | 5_1:+28160083 | None:intergenic |
| TCAGAACTCAGCGATATCTT+GGG | 0.512833 | 5_1:-28159201 | Msa0726780:CDS |
| GCATCGTCATCGGCTTCAAA+AGG | 0.515682 | 5_1:-28160080 | Msa0726780:CDS |
| CTACCAGTGCCAAAGTCAAA+AGG | 0.516003 | 5_1:-28160149 | Msa0726780:CDS |
| AACAGAATCAGTTGTGAAGT+GGG | 0.518376 | 5_1:+28157225 | None:intergenic |
| TTTCTTGATGAAGGTGAAGA+TGG | 0.518721 | 5_1:+28157434 | None:intergenic |
| TGACTTTGGCACTGGTAGGA+CGG | 0.522101 | 5_1:+28160154 | None:intergenic |
| ATGATGATGATGACGACGAT+TGG | 0.527333 | 5_1:-28160115 | Msa0726780:CDS |
| ACAGTGTTAATAATTGTTTG+AGG | 0.533588 | 5_1:-28159989 | Msa0726780:CDS |
| AAGAAGGGAAAGGCGATCAC+AGG | 0.534683 | 5_1:-28159715 | Msa0726780:CDS |
| GGGTTAGCTCCTTTGCCTAA+GGG | 0.540730 | 5_1:-28159428 | Msa0726780:CDS |
| GATATCTTGGGCGATTTGAA+GGG | 0.544554 | 5_1:-28159189 | Msa0726780:CDS |
| AGCAGGGTGACCAGATTACA+AGG | 0.546881 | 5_1:-28159914 | Msa0726780:CDS |
| GTATGGGAACTGAACTTGAC+AGG | 0.548017 | 5_1:-28159155 | Msa0726780:intron |
| AAGGGTATGGCAATTAGTAT+GGG | 0.550887 | 5_1:-28159171 | Msa0726780:CDS |
| AACAAAGCTCTTGATCATCT+CGG | 0.558049 | 5_1:-28158776 | Msa0726780:CDS |
| GAGAAGAGGCGAGTTCCTAC+GGG | 0.558617 | 5_1:-28157254 | Msa0726780:CDS |
| GGAAAACTATGCGGTGAACA+AGG | 0.559559 | 5_1:-28160027 | Msa0726780:CDS |
| GCAGAACGTCCCTTAGGCAA+AGG | 0.562412 | 5_1:+28159419 | None:intergenic |
| AAACAGAATCAGTTGTGAAG+TGG | 0.562616 | 5_1:+28157224 | None:intergenic |
| AGGAAGATAGGGCAAAGCTA+GGG | 0.563180 | 5_1:-28159448 | Msa0726780:CDS |
| AAGAAAGCCTGCATCGTCAT+CGG | 0.564972 | 5_1:-28160090 | Msa0726780:CDS |
| TCGTCATCGGCTTCAAAAGG+TGG | 0.569393 | 5_1:-28160077 | Msa0726780:CDS |
| AGAAAACCTGATGTAATCAC+CGG | 0.570974 | 5_1:+28159691 | None:intergenic |
| ATCAGATAACACATCCAAGA+AGG | 0.572526 | 5_1:-28159483 | Msa0726780:intron |
| CAAGATTTGGTGCTGAGAAG+AGG | 0.578741 | 5_1:-28157268 | Msa0726780:CDS |
| GTCAGACTCATTAGGAGGCG+TGG | 0.583438 | 5_1:+28159391 | None:intergenic |
| CTGGAAGCCAAAGAAGGGAA+AGG | 0.585814 | 5_1:-28159725 | Msa0726780:CDS |
| CACCGAGAAGGATTTGAGTA+GGG | 0.586800 | 5_1:-28159871 | Msa0726780:intron |
| AGTTCGTCTAGCTGGAGTGA+TGG | 0.587136 | 5_1:+28160187 | None:intergenic |
| AAACTCCTAAACAATCTTGG+TGG | 0.591477 | 5_1:-28159763 | Msa0726780:CDS |
| TGAAGTGGGTTTGGTCCCGT+AGG | 0.593082 | 5_1:+28157239 | None:intergenic |
| ACACCGAGAAGGATTTGAGT+AGG | 0.594649 | 5_1:-28159872 | Msa0726780:CDS |
| AAACCCTGGAAGCCAAAGAA+GGG | 0.600415 | 5_1:-28159730 | Msa0726780:CDS |
| GATGATGATGACGACGATTG+GGG | 0.605563 | 5_1:-28160113 | Msa0726780:CDS |
| GTGGCATGTTCTCTAAACCC+TGG | 0.606426 | 5_1:-28159744 | Msa0726780:CDS |
| GTAGGAGCAGAACGTCCCTT+AGG | 0.612516 | 5_1:+28159413 | None:intergenic |
| GAGCTGAACAATCGAATGAA+AGG | 0.615161 | 5_1:-28158740 | Msa0726780:intron |
| GACTCATTAGGAGGCGTGGT+AGG | 0.617743 | 5_1:+28159395 | None:intergenic |
| CTATGCGGTGAACAAGGCTG+AGG | 0.629596 | 5_1:-28160021 | Msa0726780:CDS |
| TATGGTTGTCGACACCGAGA+AGG | 0.631327 | 5_1:-28159883 | Msa0726780:CDS |
| TCAATACCATGATCATGAGA+AGG | 0.631533 | 5_1:+28157293 | None:intergenic |
| TCTAGCTGGAGTGATGGCTG+TGG | 0.642668 | 5_1:+28160193 | None:intergenic |
| GCGCTGTCAGACTCATTAGG+AGG | 0.647145 | 5_1:+28159386 | None:intergenic |
| CTTGACATGTTGCACCAGCA+GGG | 0.647892 | 5_1:-28159930 | Msa0726780:CDS |
| GAAAACCTGATGTAATCACC+GGG | 0.660551 | 5_1:+28159692 | None:intergenic |
| TAATTGTTTGAGGATTGCTG+AGG | 0.663230 | 5_1:-28159979 | Msa0726780:CDS |
| TCAGGAGTTGGAAAACTATG+CGG | 0.755822 | 5_1:-28160036 | Msa0726780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATATTATAATTGAATT+TGG | - | chr5_1:28157962-28157981 | Msa0726780:intron | 10.0% |
| !!! | AAAAAGTGAAATATTATTTT+GGG | + | chr5_1:28159401-28159420 | None:intergenic | 10.0% |
| !!! | AAAAAAGTGAAATATTATTT+TGG | + | chr5_1:28159402-28159421 | None:intergenic | 10.0% |
| !!! | ACGAAATAAGAAATAATTTT+AGG | - | chr5_1:28159452-28159471 | Msa0726780:CDS | 15.0% |
| !!! | CGAAATAAGAAATAATTTTA+GGG | - | chr5_1:28159453-28159472 | Msa0726780:CDS | 15.0% |
| !!! | GAGTTAGAATGTAAAATTTT+GGG | + | chr5_1:28157679-28157698 | None:intergenic | 20.0% |
| !!! | AGAGTTAGAATGTAAAATTT+TGG | + | chr5_1:28157680-28157699 | None:intergenic | 20.0% |
| !! | TTTAATCATTGTACATCATT+AGG | - | chr5_1:28158359-28158378 | Msa0726780:intron | 20.0% |
| !!! | TTTTAGAACATGTGTAATAA+AGG | - | chr5_1:28158962-28158981 | Msa0726780:intron | 20.0% |
| !!! | AATTTTGCAATATCTAGATA+GGG | - | chr5_1:28159002-28159021 | Msa0726780:intron | 20.0% |
| !!! | TAGATAATCTACTGTATTTT+TGG | + | chr5_1:28159052-28159071 | None:intergenic | 20.0% |
| !! | TTATGATAAGAGTAACTAAA+TGG | + | chr5_1:28159181-28159200 | None:intergenic | 20.0% |
| !! | TTAATTGTAATCTACTAGTT+AGG | + | chr5_1:28159338-28159357 | None:intergenic | 20.0% |
| !!! | TGAAATATTATTTTGGGTTT+TGG | + | chr5_1:28159395-28159414 | None:intergenic | 20.0% |
| !! | TATCATAAATCAAGATTGTT+TGG | + | chr5_1:28159433-28159452 | None:intergenic | 20.0% |
| !! | GATTATTATACCTTAAACAT+AGG | + | chr5_1:28159622-28159641 | None:intergenic | 20.0% |
| !!! | AAATAGTTTCCTTTTGACTT+TGG | + | chr5_1:28157337-28157356 | None:intergenic | 25.0% |
| ! | ACAGTGTTAATAATTGTTTG+AGG | - | chr5_1:28157485-28157504 | Msa0726780:intron | 25.0% |
| !!! | CTTGTTTCTTTTCTTTTTGT+TGG | - | chr5_1:28157635-28157654 | Msa0726780:intron | 25.0% |
| !!! | ATATACATGATTTGTTATGC+AGG | + | chr5_1:28157942-28157961 | None:intergenic | 25.0% |
| ! | TAAACAAAATGATCAAACCA+AGG | + | chr5_1:28158390-28158409 | None:intergenic | 25.0% |
| !!! | TAGAAAATCGACTTTTGAAA+TGG | - | chr5_1:28158536-28158555 | Msa0726780:intron | 25.0% |
| !! | GAATTTTGCAATATCTAGAT+AGG | - | chr5_1:28159001-28159020 | Msa0726780:intron | 25.0% |
| ! | TAAATTATCGCCAAAATGAT+CGG | - | chr5_1:28159025-28159044 | Msa0726780:intron | 25.0% |
| ! | AAATCGAACATCTAATCAAA+TGG | + | chr5_1:28159111-28159130 | None:intergenic | 25.0% |
| ! | CATTGGTATACTTTGATAAA+GGG | + | chr5_1:28159314-28159333 | None:intergenic | 25.0% |
| ! | TCATTGGTATACTTTGATAA+AGG | + | chr5_1:28159315-28159334 | None:intergenic | 25.0% |
| !! | TTTTAATGACCTATTGTGTA+TGG | + | chr5_1:28159515-28159534 | None:intergenic | 25.0% |
| ! | TTGTTTGAATCCTATGTTTA+AGG | - | chr5_1:28159609-28159628 | Msa0726780:intron | 25.0% |
| ! | AGTTTATATGTGGATGTTTA+TGG | + | chr5_1:28159658-28159677 | None:intergenic | 25.0% |
| !!! | GTCAATTAATTTTAGGGTTT+TGG | + | chr5_1:28159722-28159741 | None:intergenic | 25.0% |
| ! | AAATGATGAGAGAAAAAGAA+GGG | + | chr5_1:28159851-28159870 | None:intergenic | 25.0% |
| ! | AAAATGATGAGAGAAAAAGA+AGG | + | chr5_1:28159852-28159871 | None:intergenic | 25.0% |
| ! | AAGAATCACAATAAAGAAGA+TGG | + | chr5_1:28160087-28160106 | None:intergenic | 25.0% |
| TATTATGAGTCCTTGTAATC+TGG | + | chr5_1:28157573-28157592 | None:intergenic | 30.0% | |
| GATTACAAGGACTCATAATA+TGG | - | chr5_1:28157573-28157592 | Msa0726780:intron | 30.0% | |
| ! | TTTTACATTCTAACTCTCAC+AGG | - | chr5_1:28157683-28157702 | Msa0726780:intron | 30.0% |
| TTTACATTCTAACTCTCACA+GGG | - | chr5_1:28157684-28157703 | Msa0726780:intron | 30.0% | |
| GAAAAACTCCTAAACAATCT+TGG | - | chr5_1:28157708-28157727 | Msa0726780:intron | 30.0% | |
| AGAATAACTCGTAAGTATGA+AGG | + | chr5_1:28157814-28157833 | None:intergenic | 30.0% | |
| TTCATACTTACGAGTTATTC+TGG | - | chr5_1:28157813-28157832 | Msa0726780:intron | 30.0% | |
| !! | ACCATTGATTTGTTTATCCA+CGG | + | chr5_1:28157905-28157924 | None:intergenic | 30.0% |
| ATGTAATGAGTAAGGAAGAT+AGG | - | chr5_1:28158014-28158033 | Msa0726780:intron | 30.0% | |
| TGTAATGAGTAAGGAAGATA+GGG | - | chr5_1:28158015-28158034 | Msa0726780:intron | 30.0% | |
| GAAAAAGCTAAACAAGATGA+TGG | - | chr5_1:28158246-28158265 | Msa0726780:intron | 30.0% | |
| ! | AACTTGACAGGTACAATTTT+TGG | - | chr5_1:28158331-28158350 | Msa0726780:intron | 30.0% |
| ! | ACATATTTTTCTACGCACAA+CGG | + | chr5_1:28158516-28158535 | None:intergenic | 30.0% |
| GGTTGAAATTAGCTCATTAT+TGG | - | chr5_1:28158557-28158576 | Msa0726780:intron | 30.0% | |
| ! | ACTAATTTTGCCGTAAAGAA+CGG | - | chr5_1:28158596-28158615 | Msa0726780:intron | 30.0% |
| TTACAACATTCCGTTCTTTA+CGG | + | chr5_1:28158609-28158628 | None:intergenic | 30.0% | |
| !!! | TATTTTTGGTCCGATCATTT+TGG | + | chr5_1:28159038-28159057 | None:intergenic | 30.0% |
| TATCTACATTTGTACACAAG+TGG | - | chr5_1:28159066-28159085 | Msa0726780:intron | 30.0% | |
| TAATCTACTAGTTAGGTCAT+TGG | + | chr5_1:28159331-28159350 | None:intergenic | 30.0% | |
| AAACAAAAAGAAAGTTGGGT+TGG | + | chr5_1:28159568-28159587 | None:intergenic | 30.0% | |
| ! | AACCCAACTTTCTTTTTGTT+TGG | - | chr5_1:28159567-28159586 | Msa0726780:intron | 30.0% |
| TATATGTGGATGTTTATGGA+GGG | + | chr5_1:28159654-28159673 | None:intergenic | 30.0% | |
| TTATATGTGGATGTTTATGG+AGG | + | chr5_1:28159655-28159674 | None:intergenic | 30.0% | |
| ! | GGCTAGGTCAATTAATTTTA+GGG | + | chr5_1:28159728-28159747 | None:intergenic | 30.0% |
| ATGAAGATGTGTAAAGAAAG+GGG | + | chr5_1:28159752-28159771 | None:intergenic | 30.0% | |
| CATGAAGATGTGTAAAGAAA+GGG | + | chr5_1:28159753-28159772 | None:intergenic | 30.0% | |
| ACATGAAGATGTGTAAAGAA+AGG | + | chr5_1:28159754-28159773 | None:intergenic | 30.0% | |
| TGAATTGTGTGAAAATGAAG+AGG | + | chr5_1:28159824-28159843 | None:intergenic | 30.0% | |
| !! | GTGATGTTTGTGTTGTTTAT+GGG | + | chr5_1:28159879-28159898 | None:intergenic | 30.0% |
| !! | AGTGATGTTTGTGTTGTTTA+TGG | + | chr5_1:28159880-28159899 | None:intergenic | 30.0% |
| ! | TCTAAAACAGAGAAAAACAG+AGG | + | chr5_1:28159917-28159936 | None:intergenic | 30.0% |
| ! | CTTCTCTTTTTCTTCTCTTT+AGG | - | chr5_1:28159989-28160008 | Msa0726780:CDS | 30.0% |
| !! | TTTTGAGTGTTTCTTGATGA+AGG | + | chr5_1:28160052-28160071 | None:intergenic | 30.0% |
| !! | AATAAAGAAGATGGTGTTGT+TGG | + | chr5_1:28160078-28160097 | None:intergenic | 30.0% |
| CTTGTTTATGCAATCTTTGA+TGG | + | chr5_1:28160156-28160175 | None:intergenic | 30.0% | |
| ! | ACTAGAGAATCAAAGTGTTC+AGG | - | chr5_1:28157420-28157439 | Msa0726780:CDS | 35.0% |
| TAATTGTTTGAGGATTGCTG+AGG | - | chr5_1:28157495-28157514 | Msa0726780:intron | 35.0% | |
| ATATTCGAAGTGATGCTTCA+AGG | - | chr5_1:28157518-28157537 | Msa0726780:intron | 35.0% | |
| AAACTCCTAAACAATCTTGG+TGG | - | chr5_1:28157711-28157730 | Msa0726780:intron | 35.0% | |
| AGAAAACCTGATGTAATCAC+CGG | + | chr5_1:28157786-28157805 | None:intergenic | 35.0% | |
| TTCATGTGCAAATACGCATT+AGG | - | chr5_1:28157855-28157874 | Msa0726780:intron | 35.0% | |
| GTTAATACTGTTCACTCTAG+AGG | + | chr5_1:28157883-28157902 | None:intergenic | 35.0% | |
| ACCGTGGATAAACAAATCAA+TGG | - | chr5_1:28157901-28157920 | Msa0726780:intron | 35.0% | |
| ATCAGATAACACATCCAAGA+AGG | - | chr5_1:28157991-28158010 | Msa0726780:intron | 35.0% | |
| CTTACTCATTACATCCTTCT+TGG | + | chr5_1:28158008-28158027 | None:intergenic | 35.0% | |
| CAAGAAGGATGTAATGAGTA+AGG | - | chr5_1:28158006-28158025 | Msa0726780:intron | 35.0% | |
| !!! | ACATACGTCGATTTTCTGAT+AGG | + | chr5_1:28158113-28158132 | None:intergenic | 35.0% |
| ! | AAGGGTATGGCAATTAGTAT+GGG | - | chr5_1:28158303-28158322 | Msa0726780:intron | 35.0% |
| !! | TACATCATTAGGAAGTACCT+TGG | - | chr5_1:28158370-28158389 | Msa0726780:intron | 35.0% |
| ! | ATTTGATTTCGCTAAGCATG+CGG | - | chr5_1:28158471-28158490 | Msa0726780:intron | 35.0% |
| CTCAGCATAACACAACTATA+GGG | + | chr5_1:28158643-28158662 | None:intergenic | 35.0% | |
| TCTCAGCATAACACAACTAT+AGG | + | chr5_1:28158644-28158663 | None:intergenic | 35.0% | |
| !!! | GATGATCAAGAGCTTTGTTT+TGG | + | chr5_1:28158697-28158716 | None:intergenic | 35.0% |
| AACAAAGCTCTTGATCATCT+CGG | - | chr5_1:28158698-28158717 | Msa0726780:intron | 35.0% | |
| ! | GAGAGGGAAAATGGTATTTT+GGG | + | chr5_1:28159546-28159565 | None:intergenic | 35.0% |
| GGCCAAACAAAAAGAAAGTT+GGG | + | chr5_1:28159572-28159591 | None:intergenic | 35.0% | |
| AGGCCAAACAAAAAGAAAGT+TGG | + | chr5_1:28159573-28159592 | None:intergenic | 35.0% | |
| !! | TTCTTTTTGTTTGGCCTACA+AGG | - | chr5_1:28159576-28159595 | Msa0726780:intron | 35.0% |
| !! | TCTTTTTGTTTGGCCTACAA+GGG | - | chr5_1:28159577-28159596 | Msa0726780:intron | 35.0% |
| AGAGTCATGGAGTTTATATG+TGG | + | chr5_1:28159668-28159687 | None:intergenic | 35.0% | |
| AGTACACATCAAAAGAGTCA+TGG | + | chr5_1:28159681-28159700 | None:intergenic | 35.0% | |
| ! | GGGCTAGGTCAATTAATTTT+AGG | + | chr5_1:28159729-28159748 | None:intergenic | 35.0% |
| TGAAGATGTGTAAAGAAAGG+GGG | + | chr5_1:28159751-28159770 | None:intergenic | 35.0% | |
| !! | TGTTTGTGTTGTTTATGGGA+TGG | + | chr5_1:28159875-28159894 | None:intergenic | 35.0% |
| TTTCTTGATGAAGGTGAAGA+TGG | + | chr5_1:28160043-28160062 | None:intergenic | 35.0% | |
| !! | GCAATCTTTGATGGATTCTT+TGG | + | chr5_1:28160147-28160166 | None:intergenic | 35.0% |
| TCAATACCATGATCATGAGA+AGG | + | chr5_1:28160184-28160203 | None:intergenic | 35.0% | |
| !! | CATGGTATTGATCCAAGATT+TGG | - | chr5_1:28160193-28160212 | Msa0726780:CDS | 35.0% |
| !!! | TTTCCTTTTGACTTTGGCAC+TGG | + | chr5_1:28157331-28157350 | None:intergenic | 40.0% |
| ! | ATGATGATGATGACGACGAT+TGG | - | chr5_1:28157359-28157378 | Msa0726780:CDS | 40.0% |
| ! | TGATGATGATGACGACGATT+GGG | - | chr5_1:28157360-28157379 | Msa0726780:CDS | 40.0% |
| ! | GAATCAAAGTGTTCAGGAGT+TGG | - | chr5_1:28157426-28157445 | Msa0726780:CDS | 40.0% |
| TCAGGAGTTGGAAAACTATG+CGG | - | chr5_1:28157438-28157457 | Msa0726780:CDS | 40.0% | |
| TACCCTACTCAAATCCTTCT+CGG | + | chr5_1:28157608-28157627 | None:intergenic | 40.0% | |
| ACATGCCACCAAGATTGTTT+AGG | + | chr5_1:28157719-28157738 | None:intergenic | 40.0% | |
| GAAAACCTGATGTAATCACC+GGG | + | chr5_1:28157785-28157804 | None:intergenic | 40.0% | |
| AGAGTGAACAGTATTAACCG+TGG | - | chr5_1:28157885-28157904 | Msa0726780:intron | 40.0% | |
| TCAGAACTCAGCGATATCTT+GGG | - | chr5_1:28158273-28158292 | Msa0726780:intron | 40.0% | |
| GATATCTTGGGCGATTTGAA+GGG | - | chr5_1:28158285-28158304 | Msa0726780:intron | 40.0% | |
| ! | GAAGGGTATGGCAATTAGTA+TGG | - | chr5_1:28158302-28158321 | Msa0726780:intron | 40.0% |
| !!! | TTTGTTTTGGCTGCAACATC+AGG | + | chr5_1:28158684-28158703 | None:intergenic | 40.0% |
| GAGCTGAACAATCGAATGAA+AGG | - | chr5_1:28158734-28158753 | Msa0726780:intron | 40.0% | |
| CTAGCGAAGTAACAGATGAT+AGG | - | chr5_1:28158782-28158801 | Msa0726780:CDS | 40.0% | |
| AAGTAACAGATGATAGGCTG+AGG | - | chr5_1:28158788-28158807 | Msa0726780:intron | 40.0% | |
| AGTAACAGATGATAGGCTGA+GGG | - | chr5_1:28158789-28158808 | Msa0726780:intron | 40.0% | |
| CACAAGCATCCATACACAAT+AGG | - | chr5_1:28159503-28159522 | Msa0726780:intron | 40.0% | |
| !! | GGGAAAATGGTATTTTGGGT+TGG | + | chr5_1:28159542-28159561 | None:intergenic | 40.0% |
| ! | GGAGAGGGAAAATGGTATTT+TGG | + | chr5_1:28159547-28159566 | None:intergenic | 40.0% |
| !! | AAAGAAAGTTGGGTTGGAGA+GGG | + | chr5_1:28159562-28159581 | None:intergenic | 40.0% |
| !! | AAAAGAAAGTTGGGTTGGAG+AGG | + | chr5_1:28159563-28159582 | None:intergenic | 40.0% |
| ! | ACAATTGTCACTTCCCTTGT+AGG | + | chr5_1:28159593-28159612 | None:intergenic | 40.0% |
| AAGATGTGTAAAGAAAGGGG+GGG | + | chr5_1:28159749-28159768 | None:intergenic | 40.0% | |
| GAAGATGTGTAAAGAAAGGG+GGG | + | chr5_1:28159750-28159769 | None:intergenic | 40.0% | |
| GTTTCACCTTCTCATGATCA+TGG | - | chr5_1:28160175-28160194 | Msa0726780:CDS | 40.0% | |
| TCTGAAGAAGTTCGTCTAGC+TGG | + | chr5_1:28157298-28157317 | None:intergenic | 45.0% | |
| !!! | CTTTTGACTTTGGCACTGGT+AGG | + | chr5_1:28157327-28157346 | None:intergenic | 45.0% |
| CTACCAGTGCCAAAGTCAAA+AGG | - | chr5_1:28157325-28157344 | Msa0726780:CDS | 45.0% | |
| ! | GATGATGATGACGACGATTG+GGG | - | chr5_1:28157361-28157380 | Msa0726780:CDS | 45.0% |
| AAGAAAGCCTGCATCGTCAT+CGG | - | chr5_1:28157384-28157403 | Msa0726780:CDS | 45.0% | |
| GGAAAACTATGCGGTGAACA+AGG | - | chr5_1:28157447-28157466 | Msa0726780:CDS | 45.0% | |
| ACACCGAGAAGGATTTGAGT+AGG | - | chr5_1:28157602-28157621 | Msa0726780:intron | 45.0% | |
| CACCGAGAAGGATTTGAGTA+GGG | - | chr5_1:28157603-28157622 | Msa0726780:intron | 45.0% | |
| TAAACCCTGGAAGCCAAAGA+AGG | - | chr5_1:28157743-28157762 | Msa0726780:intron | 45.0% | |
| AAACCCTGGAAGCCAAAGAA+GGG | - | chr5_1:28157744-28157763 | Msa0726780:intron | 45.0% | |
| ! | TTTCCCTTCTTTGGCTTCCA+GGG | + | chr5_1:28157750-28157769 | None:intergenic | 45.0% |
| AAGGAAGATAGGGCAAAGCT+AGG | - | chr5_1:28158025-28158044 | Msa0726780:intron | 45.0% | |
| AGGAAGATAGGGCAAAGCTA+GGG | - | chr5_1:28158026-28158045 | Msa0726780:intron | 45.0% | |
| CTCAGAACTCAGCGATATCT+TGG | - | chr5_1:28158272-28158291 | Msa0726780:intron | 45.0% | |
| CGATATCTTGGGCGATTTGA+AGG | - | chr5_1:28158284-28158303 | Msa0726780:intron | 45.0% | |
| GTATGGGAACTGAACTTGAC+AGG | - | chr5_1:28158319-28158338 | Msa0726780:intron | 45.0% | |
| GTAACAGATGATAGGCTGAG+GGG | - | chr5_1:28158790-28158809 | Msa0726780:intron | 45.0% | |
| GTTATGGTGCTTTCACTTGC+TGG | - | chr5_1:28158820-28158839 | Msa0726780:intron | 45.0% | |
| ! | TGTTTATGGAGGGTATGGTG+TGG | + | chr5_1:28159644-28159663 | None:intergenic | 45.0% |
| GTGGATGTTTATGGAGGGTA+TGG | + | chr5_1:28159649-28159668 | None:intergenic | 45.0% | |
| CTCTTCTCAGCACCAAATCT+TGG | + | chr5_1:28160208-28160227 | None:intergenic | 45.0% | |
| !! | CAAGATTTGGTGCTGAGAAG+AGG | - | chr5_1:28160206-28160225 | Msa0726780:CDS | 45.0% |
| !!! | TTTTGTATTTTTATATAAAA+AGG | + | chr5_1:28159218-28159237 | None:intergenic | 5.0% |
| !!! | AAAATAATCTATAAATTTTT+TGG | - | chr5_1:28159236-28159255 | Msa0726780:intron | 5.0% |
| !!! | TTTTCTGGTTCGGTGGTTGG+TGG | + | chr5_1:28157259-28157278 | None:intergenic | 50.0% |
| !!! | GTCTTTTCTGGTTCGGTGGT+TGG | + | chr5_1:28157262-28157281 | None:intergenic | 50.0% |
| !!! | TGTGGTCTTTTCTGGTTCGG+TGG | + | chr5_1:28157266-28157285 | None:intergenic | 50.0% |
| !!! | GGCTGTGGTCTTTTCTGGTT+CGG | + | chr5_1:28157269-28157288 | None:intergenic | 50.0% |
| ! | GTGATGGCTGTGGTCTTTTC+TGG | + | chr5_1:28157274-28157293 | None:intergenic | 50.0% |
| AGTTCGTCTAGCTGGAGTGA+TGG | + | chr5_1:28157290-28157309 | None:intergenic | 50.0% | |
| !! | TGACTTTGGCACTGGTAGGA+CGG | + | chr5_1:28157323-28157342 | None:intergenic | 50.0% |
| ! | TTTGAAGCCGATGACGATGC+AGG | + | chr5_1:28157394-28157413 | None:intergenic | 50.0% |
| !! | GCATCGTCATCGGCTTCAAA+AGG | - | chr5_1:28157394-28157413 | Msa0726780:CDS | 50.0% |
| !! | TCGTCATCGGCTTCAAAAGG+TGG | - | chr5_1:28157397-28157416 | Msa0726780:CDS | 50.0% |
| TCTTGACATGTTGCACCAGC+AGG | - | chr5_1:28157543-28157562 | Msa0726780:intron | 50.0% | |
| CTTGACATGTTGCACCAGCA+GGG | - | chr5_1:28157544-28157563 | Msa0726780:intron | 50.0% | |
| TTGTAATCTGGTCACCCTGC+TGG | + | chr5_1:28157561-28157580 | None:intergenic | 50.0% | |
| AGCAGGGTGACCAGATTACA+AGG | - | chr5_1:28157560-28157579 | Msa0726780:intron | 50.0% | |
| TATGGTTGTCGACACCGAGA+AGG | - | chr5_1:28157591-28157610 | Msa0726780:intron | 50.0% | |
| GTGGCATGTTCTCTAAACCC+TGG | - | chr5_1:28157730-28157749 | Msa0726780:intron | 50.0% | |
| ! | CTTTCCCTTCTTTGGCTTCC+AGG | + | chr5_1:28157751-28157770 | None:intergenic | 50.0% |
| CTGGAAGCCAAAGAAGGGAA+AGG | - | chr5_1:28157749-28157768 | Msa0726780:intron | 50.0% | |
| GTGATCGCCTTTCCCTTCTT+TGG | + | chr5_1:28157759-28157778 | None:intergenic | 50.0% | |
| AAGAAGGGAAAGGCGATCAC+AGG | - | chr5_1:28157759-28157778 | Msa0726780:intron | 50.0% | |
| !! | AGGGTTAGCTCCTTTGCCTA+AGG | - | chr5_1:28158045-28158064 | Msa0726780:intron | 50.0% |
| !! | GGGTTAGCTCCTTTGCCTAA+GGG | - | chr5_1:28158046-28158065 | Msa0726780:intron | 50.0% |
| ! | TAGGCGCTGTCAGACTCATT+AGG | + | chr5_1:28158094-28158113 | None:intergenic | 50.0% |
| CTTGGGCGATTTGAAGGGTA+TGG | - | chr5_1:28158290-28158309 | Msa0726780:intron | 50.0% | |
| ATTTCGCTAAGCATGCGGTC+AGG | - | chr5_1:28158476-28158495 | Msa0726780:intron | 50.0% | |
| ! | TAATTTGCGTGCACGCTGGT+TGG | + | chr5_1:28158762-28158781 | None:intergenic | 50.0% |
| ! | CTAGTAATTTGCGTGCACGC+TGG | + | chr5_1:28158766-28158785 | None:intergenic | 50.0% |
| GCTGAGGGGCTTCTTTGTTA+TGG | - | chr5_1:28158804-28158823 | Msa0726780:intron | 50.0% | |
| !! | GTTGGGTTGGAGAGGGAAAA+TGG | + | chr5_1:28159555-28159574 | None:intergenic | 50.0% |
| TGAGAAGAGGCGAGTTCCTA+CGG | - | chr5_1:28160219-28160238 | Msa0726780:CDS | 50.0% | |
| TCTAGCTGGAGTGATGGCTG+TGG | + | chr5_1:28157284-28157303 | None:intergenic | 55.0% | |
| !! | GACTTTGGCACTGGTAGGAC+GGG | + | chr5_1:28157322-28157341 | None:intergenic | 55.0% |
| CTATGCGGTGAACAAGGCTG+AGG | - | chr5_1:28157453-28157472 | Msa0726780:CDS | 55.0% | |
| ACAGGCCCGGTGATTACATC+AGG | - | chr5_1:28157777-28157796 | Msa0726780:intron | 55.0% | |
| GCAGAACGTCCCTTAGGCAA+AGG | + | chr5_1:28158058-28158077 | None:intergenic | 55.0% | |
| GTAGGAGCAGAACGTCCCTT+AGG | + | chr5_1:28158064-28158083 | None:intergenic | 55.0% | |
| ! | GACTCATTAGGAGGCGTGGT+AGG | + | chr5_1:28158082-28158101 | None:intergenic | 55.0% |
| GTCAGACTCATTAGGAGGCG+TGG | + | chr5_1:28158086-28158105 | None:intergenic | 55.0% | |
| GCGCTGTCAGACTCATTAGG+AGG | + | chr5_1:28158091-28158110 | None:intergenic | 55.0% | |
| GTGTAAAGAAAGGGGGGGCT+AGG | + | chr5_1:28159744-28159763 | None:intergenic | 55.0% | |
| GAGAAGAGGCGAGTTCCTAC+GGG | - | chr5_1:28160220-28160239 | Msa0726780:CDS | 55.0% | |
| ! | TGAAGTGGGTTTGGTCCCGT+AGG | + | chr5_1:28160238-28160257 | None:intergenic | 55.0% |
| GGGAAAGGCGATCACAGGCC+CGG | - | chr5_1:28157764-28157783 | Msa0726780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 28157232 | 28160264 | 28157232 | ID=Msa0726780;Name=Msa0726780 |
| chr5_1 | mRNA | 28157232 | 28160264 | 28157232 | ID=Msa0726780-mRNA-1;Parent=Msa0726780;Name=Msa0726780-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.83|1|1|6|0|343 |
| chr5_1 | exon | 28159872 | 28160264 | 28159872 | ID=Msa0726780-mRNA-1:exon:9821;Parent=Msa0726780-mRNA-1 |
| chr5_1 | exon | 28159698 | 28159791 | 28159698 | ID=Msa0726780-mRNA-1:exon:9820;Parent=Msa0726780-mRNA-1 |
| chr5_1 | exon | 28159370 | 28159500 | 28159370 | ID=Msa0726780-mRNA-1:exon:9819;Parent=Msa0726780-mRNA-1 |
| chr5_1 | exon | 28159156 | 28159253 | 28159156 | ID=Msa0726780-mRNA-1:exon:9818;Parent=Msa0726780-mRNA-1 |
| chr5_1 | exon | 28158741 | 28158802 | 28158741 | ID=Msa0726780-mRNA-1:exon:9817;Parent=Msa0726780-mRNA-1 |
| chr5_1 | exon | 28157232 | 28157485 | 28157232 | ID=Msa0726780-mRNA-1:exon:9816;Parent=Msa0726780-mRNA-1 |
| chr5_1 | CDS | 28159872 | 28160264 | 28159872 | ID=Msa0726780-mRNA-1:cds;Parent=Msa0726780-mRNA-1 |
| chr5_1 | CDS | 28159698 | 28159791 | 28159698 | ID=Msa0726780-mRNA-1:cds;Parent=Msa0726780-mRNA-1 |
| chr5_1 | CDS | 28159370 | 28159500 | 28159370 | ID=Msa0726780-mRNA-1:cds;Parent=Msa0726780-mRNA-1 |
| chr5_1 | CDS | 28159156 | 28159253 | 28159156 | ID=Msa0726780-mRNA-1:cds;Parent=Msa0726780-mRNA-1 |
| chr5_1 | CDS | 28158741 | 28158802 | 28158741 | ID=Msa0726780-mRNA-1:cds;Parent=Msa0726780-mRNA-1 |
| chr5_1 | CDS | 28157232 | 28157485 | 28157232 | ID=Msa0726780-mRNA-1:cds;Parent=Msa0726780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
