AlfalfaGEDB | Msa1419010

M. sativa cultivar zhongmu-4 / Msa1419010

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1419010	G7JXX8	74.000	50	12	1	3	52	5	53	8.08e-18	79.0

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011720	Msa1419010	0.816927	4.295988e-52	-8.615850e-47
Msa0012440	Msa1419010	0.820737	5.855217e-53	-8.615850e-47
Msa0057240	Msa1419010	0.815496	8.973547e-52	-8.615850e-47
Msa0060600	Msa1419010	0.812823	3.492794e-51	-8.615850e-47
Msa0105340	Msa1419010	0.821833	3.271471e-53	-8.615850e-47
Msa0105420	Msa1419010	0.802665	5.037966e-49	-8.615850e-47
Msa0113160	Msa1419010	0.801036	1.088123e-48	-8.615850e-47
Msa0149560	Msa1419010	0.818755	1.661400e-52	-8.615850e-47
Msa0189350	Msa1419010	0.808695	2.730041e-50	-8.615850e-47
Msa0213080	Msa1419010	0.818143	2.285817e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 20 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTTGAAGAGAATATGGT+TGG	0.531598	tig0024663:-6345	Msa1419010:CDS
AAGAGAATATGGTTGGAGTT+TGG	0.225607	tig0024663:-6338	Msa1419010:CDS
AGAGAATATGGTTGGAGTTT+GGG	0.298441	tig0024663:-6337	Msa1419010:CDS
AGATACATATACTTGTCCTT+TGG	0.454505	tig0024663:+6277	None:intergenic
ATTTATGGCTAAATGTCAAA+TGG	0.431655	tig0024663:-6254	Msa1419010:CDS
CAAGTATATGTATCTATTTA+TGG	0.308121	tig0024663:-6269	Msa1419010:CDS
CCATATTAATGAAACTCATG+GGG	0.670436	tig0024663:+6304	None:intergenic
CCCCATGAGTTTCATTAATA+TGG	0.183207	tig0024663:-6304	Msa1419010:CDS
GAGAATATGGTTGGAGTTTG+GGG	0.481399	tig0024663:-6336	Msa1419010:CDS
GCTGAATCTGAAAACAAGCA+TGG	0.598695	tig0024663:-6387	Msa1419010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGTGAGAATGTTGTAAA+AGG	-	tig0024663:6291-6310	Msa1419010:CDS	30.0%
TGTGTGAGAATGTTGTAAAA+GGG	-	tig0024663:6292-6311	Msa1419010:CDS	30.0%
CCATATTAATGAAACTCATG+GGG	+	tig0024663:6405-6424	None:intergenic	30.0%
GTCCATATTAATGAAACTCA+TGG	+	tig0024663:6407-6426	None:intergenic	30.0%
AGATACATATACTTGTCCTT+TGG	+	tig0024663:6432-6451	None:intergenic	30.0%
TCTGAAAACAAGCATGGAAA+TGG	-	tig0024663:6325-6344	Msa1419010:CDS	35.0%
AAGAGAATATGGTTGGAGTT+TGG	-	tig0024663:6368-6387	Msa1419010:CDS	35.0%
AGAGAATATGGTTGGAGTTT+GGG	-	tig0024663:6369-6388	Msa1419010:CDS	35.0%
CCCCATGAGTTTCATTAATA+TGG	-	tig0024663:6402-6421	Msa1419010:intron	35.0%
TCATTAATATGGACCACCAA+AGG	-	tig0024663:6413-6432	Msa1419010:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0024663	gene	6242	6486	6242	ID=Msa1419010;Name=Msa1419010
tig0024663	mRNA	6242	6486	6242	ID=Msa1419010-mRNA-1;Parent=Msa1419010;Name=Msa1419010-mRNA-1;_AED=0.35;_eAED=0.45;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|59
tig0024663	exon	6481	6486	6481	ID=Msa1419010-mRNA-1:exon:708;Parent=Msa1419010-mRNA-1
tig0024663	exon	6242	6415	6242	ID=Msa1419010-mRNA-1:exon:707;Parent=Msa1419010-mRNA-1
tig0024663	CDS	6481	6486	6481	ID=Msa1419010-mRNA-1:cds;Parent=Msa1419010-mRNA-1
tig0024663	CDS	6242	6415	6242	ID=Msa1419010-mRNA-1:cds;Parent=Msa1419010-mRNA-1

Gene Sequence	>Msa1419010 ATGCTTGGAAGAGCTGAATCTGAAAACAAGCATGGAAATGGACCTTTTTGGGGCAACTTTGAAGAGAATATGGTTGGAGTTTGGGGTCAGGAGGACCCCATGAGTTTCATTAATATGGACCACCAAAGGACAAGTATATGTATCTATTTATGGCTAAATGTCAAATGGATTCATTGGTAA
Protein sequence	>Msa1419010 MLGRAESENKHGNGPFWGNFEENMVGVWGQEDPMSFINMDHQRTSICIYLWLNVKWIHW*