AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473240 MtrunA17_Chr3g0129011 96.503 286 10 0 1 286 1 286 0.0 585
Msa0473240 MtrunA17_Chr1g0197631 45.213 188 96 3 66 247 68 254 2.49e-43 152
Msa0473240 MtrunA17_Chr7g0228091 39.205 176 105 2 72 247 314 487 5.94e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473240 AT3G10940.1 71.970 264 67 3 28 286 21 282 6.77e-140 395
Msa0473240 AT3G52180.3 42.439 205 116 2 65 268 66 269 9.88e-46 155
Msa0473240 AT3G52180.2 42.439 205 116 2 65 268 66 269 1.68e-45 155
Msa0473240 AT3G52180.1 42.439 205 116 2 65 268 66 269 2.77e-44 154
Msa0473240 AT3G52180.4 44.000 175 96 2 95 268 1 174 1.37e-38 137
Msa0473240 AT3G01510.3 35.565 239 145 5 9 247 69 298 1.13e-31 122
Msa0473240 AT3G01510.2 35.565 239 145 5 9 247 69 298 1.13e-31 122
Msa0473240 AT3G01510.1 35.565 239 145 5 9 247 211 440 3.78e-31 122

Find 75 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTATCAATTACTCTATT+AGG 0.200564 3_3:-75766803 Msa0473240:CDS
TCAATACTACATGGAATATT+TGG 0.229020 3_3:+75763633 None:intergenic
TGACAATTGCTTATTTGTTC+TGG 0.251643 3_3:-75764814 Msa0473240:CDS
TTCAACATTCAGAGCTTCTT+TGG 0.262998 3_3:-75766880 Msa0473240:CDS
ATCTAAATCTAATGATTTAA+TGG 0.263330 3_3:-75766715 Msa0473240:CDS
AGTCTTCCAGACCATGCTTT+TGG 0.273596 3_3:-75763985 Msa0473240:CDS
GAATATTTGGTACCAGTTAC+AGG 0.278378 3_3:+75763646 None:intergenic
TCTAAGGATGACACTGCTTT+AGG 0.291760 3_3:+75764908 None:intergenic
CTCAGAAATTGCCCATTCTA+AGG 0.297875 3_3:+75764892 None:intergenic
TTAAGGTGATCTAAATCTTC+AGG 0.302598 3_3:+75765570 None:intergenic
ATCTTCAGGTTTCTGTGGTT+GGG 0.311400 3_3:+75765584 None:intergenic
GATTGACAGGTCAGTGCTTA+TGG 0.313968 3_3:-75763779 Msa0473240:intron
CCACACCTTCTTCCTTCTTA+AGG 0.313968 3_3:+75765553 None:intergenic
AGGATAAGGATGCTGAGTTT+TGG 0.315172 3_3:-75765509 Msa0473240:CDS
ACAAGGAGCAACTTATGATT+TGG 0.358184 3_3:-75764040 Msa0473240:CDS
AGAACAGAATTTAGATTCAA+TGG 0.367500 3_3:+75763525 None:intergenic
AATCTTCAGGTTTCTGTGGT+TGG 0.369739 3_3:+75765583 None:intergenic
AGTGCACCTCGCAAAGAGTT+TGG 0.380970 3_3:+75764932 None:intergenic
CTTTGAAGTTAGCATATCAT+AGG 0.392022 3_3:+75764092 None:intergenic
ATAGGTATATTGCCTGTAAC+TGG 0.397078 3_3:-75763658 Msa0473240:three_prime_UTR
ATATTCCATGTAGTATTGAT+TGG 0.399152 3_3:-75763629 Msa0473240:three_prime_UTR
TCTAAACTTGCAACAGGATA+AGG 0.402340 3_3:-75765523 Msa0473240:CDS
GCATATTTATATAGATATAT+AGG 0.402680 3_3:-75763676 Msa0473240:three_prime_UTR
TTATGAGTATCATCACGATC+TGG 0.441184 3_3:-75766652 Msa0473240:CDS
AACCGCGTCCGCGCTCTTCG+TGG 0.445075 3_3:-75763928 Msa0473240:CDS
CAAATAATAAATCAACTTTG+TGG 0.446478 3_3:-75763606 Msa0473240:three_prime_UTR
AGATTTAGATACCCTCTTGC+TGG 0.449666 3_3:+75766728 None:intergenic
ATATATTCTAAACTTGCAAC+AGG 0.450710 3_3:-75765529 Msa0473240:CDS
AGATCGTGATGATACTCATA+AGG 0.451970 3_3:+75766654 None:intergenic
AAGCAGTGTCATCCTTAGAA+TGG 0.458306 3_3:-75764904 Msa0473240:CDS
CTCTCAAATGGCTCCTTCCA+TGG 0.458673 3_3:+75764006 None:intergenic
TTTGTTGTACACTATCAGAA+AGG 0.464043 3_3:-75766770 Msa0473240:CDS
AAATAAGCAATTGTCACTGC+TGG 0.476094 3_3:+75764821 None:intergenic
ATAACTGACAATTTGATTGT+GGG 0.477333 3_3:-75765609 Msa0473240:CDS
TTGTTGTACACTATCAGAAA+GGG 0.479495 3_3:-75766769 Msa0473240:CDS
ATATCCCCAAAAGCATGGTC+TGG 0.485767 3_3:+75763979 None:intergenic
TATAACTGACAATTTGATTG+TGG 0.487738 3_3:-75765610 Msa0473240:CDS
AAATCTACATTCTACAATCA+TGG 0.497529 3_3:+75763575 None:intergenic
TTCGTGGAACCTGACGAATT+AGG 0.502926 3_3:-75763912 Msa0473240:intron
GATCACCTTAAGAAGGAAGA+AGG 0.505838 3_3:-75765558 Msa0473240:CDS
GTTTATGTGCACTGTACTGC+AGG 0.506912 3_3:-75764857 Msa0473240:CDS
GAATTTAGATTCAATGGAAG+AGG 0.507146 3_3:+75763531 None:intergenic
AGCAGTGTCATCCTTAGAAT+GGG 0.512745 3_3:-75764903 Msa0473240:CDS
GGGATATAGCAGATTGGGAG+AGG 0.512919 3_3:-75763963 Msa0473240:CDS
ATGGAAAGTGTAAGTAACAT+TGG 0.515333 3_3:-75766909 Msa0473240:CDS
GATCGTGATGATACTCATAA+GGG 0.517872 3_3:+75766655 None:intergenic
TGGGCAATTTCTGAGGGAAA+AGG 0.518950 3_3:-75764884 Msa0473240:CDS
TTCCACGAAGAGCGCGGACG+CGG 0.520660 3_3:+75763926 None:intergenic
TGGTCTGGAAGACTCTCAAA+TGG 0.522030 3_3:+75763994 None:intergenic
AGACTAATACCTAATTCGTC+AGG 0.528930 3_3:+75763903 None:intergenic
CTTAGAATGGGCAATTTCTG+AGG 0.532588 3_3:-75764891 Msa0473240:CDS
TCTAAATCTTCAGGTTTCTG+TGG 0.534119 3_3:+75765579 None:intergenic
TATGAGTATCATCACGATCT+GGG 0.535409 3_3:-75766651 Msa0473240:intron
GTGCACTGTACTGCAGGACT+TGG 0.536912 3_3:-75764851 Msa0473240:CDS
AGATTTAGATCACCTTAAGA+AGG 0.538768 3_3:-75765565 Msa0473240:CDS
ATTTGCCAATCAATACTACA+TGG 0.557524 3_3:+75763624 None:intergenic
AAAAGAACAACAACTTGTGT+AGG 0.570717 3_3:+75763751 None:intergenic
CCAAATAAAAGAGCAATACA+AGG 0.573394 3_3:-75764057 Msa0473240:CDS
TTAGAATGGGCAATTTCTGA+GGG 0.579734 3_3:-75764890 Msa0473240:CDS
TAACTGACAATTTGATTGTG+GGG 0.583931 3_3:-75765608 Msa0473240:CDS
TAGCTATGAAGAAGATGATG+AGG 0.589831 3_3:-75766680 Msa0473240:CDS
CTGCTATATCCCCAAAAGCA+TGG 0.592436 3_3:+75763974 None:intergenic
TTAGATACCCTCTTGCTGGT+AGG 0.594440 3_3:+75766732 None:intergenic
TCAAACAAGCAAAAGAACAA+TGG 0.598043 3_3:-75766928 Msa0473240:exon
CAAAAGTACTTTCAAAGCAG+AGG 0.607347 3_3:-75766854 Msa0473240:CDS
ATAGAAACCATAAAACTGCA+TGG 0.618576 3_3:+75766819 None:intergenic
CCTTAAGAAGGAAGAAGGTG+TGG 0.624960 3_3:-75765553 Msa0473240:CDS
AAGAGAATCCTACCAGCAAG+AGG 0.628874 3_3:-75766740 Msa0473240:CDS
GTTGTACACTATCAGAAAGG+GGG 0.629451 3_3:-75766767 Msa0473240:CDS
TGTTGTACACTATCAGAAAG+GGG 0.630282 3_3:-75766768 Msa0473240:CDS
TTTGATCCAAACTCTTTGCG+AGG 0.631653 3_3:-75764938 Msa0473240:CDS
GTCAGGTTCCACGAAGAGCG+CGG 0.653317 3_3:+75763920 None:intergenic
AGAGAATCCTACCAGCAAGA+GGG 0.665221 3_3:-75766739 Msa0473240:CDS
CTAACTTCAAAGAGACCTTG+TGG 0.666372 3_3:-75764081 Msa0473240:CDS
AACTTGAAATTAGACACATG+AGG 0.720805 3_3:-75765449 Msa0473240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAATGAAAAATAAT+TGG + chr3_3:75764716-75764735 None:intergenic 10.0%
!!! ATCACATTTTTAAAAAAATT+GGG + chr3_3:75765209-75765228 None:intergenic 10.0%
!!! TATCACATTTTTAAAAAAAT+TGG + chr3_3:75765210-75765229 None:intergenic 10.0%
!!! TTTTGTTTATTTACATTATT+AGG - chr3_3:75765451-75765470 Msa0473240:CDS 10.0%
!!! CTATTTATTTTCATAAAAAA+AGG + chr3_3:75766155-75766174 None:intergenic 10.0%
!! ATCTAAATCTAATGATTTAA+TGG - chr3_3:75763705-75763724 Msa0473240:three_prime_UTR 15.0%
!!! AAAAATAATTGGTTTTCTTA+GGG + chr3_3:75764705-75764724 None:intergenic 15.0%
!! TAAATTAATGTACTAAAAAG+AGG + chr3_3:75765012-75765031 None:intergenic 15.0%
!!! TCACATTTTTAAAAAAATTG+GGG + chr3_3:75765208-75765227 None:intergenic 15.0%
!!! AAATTTTTCACAAATGAATA+TGG - chr3_3:75766276-75766295 Msa0473240:intron 15.0%
!! GCATATTTATATAGATATAT+AGG - chr3_3:75766744-75766763 Msa0473240:CDS 15.0%
!! TTTCTATCAATTACTCTATT+AGG - chr3_3:75763617-75763636 Msa0473240:three_prime_UTR 20.0%
!!! ATAGAAGTATAGAACTATAA+AGG - chr3_3:75763956-75763975 Msa0473240:CDS 20.0%
!!! TATAGTTTTCGAGTTTATAA+AGG - chr3_3:75764157-75764176 Msa0473240:intron 20.0%
!!! AGAAAGACATATTTTGAAAT+TGG - chr3_3:75764184-75764203 Msa0473240:intron 20.0%
!!! GAAAAATAATTGGTTTTCTT+AGG + chr3_3:75764706-75764725 None:intergenic 20.0%
!! TATAATTCATACCTGAAATT+AGG + chr3_3:75764786-75764805 None:intergenic 20.0%
!! GAAATTATTATCATTTGAAG+TGG + chr3_3:75765179-75765198 None:intergenic 20.0%
!!! TTTTAAAAAAATTGGGGAAA+GGG + chr3_3:75765202-75765221 None:intergenic 20.0%
!!! TTTTTAAAAAAATTGGGGAA+AGG + chr3_3:75765203-75765222 None:intergenic 20.0%
!!! TTGACTGTTTTATATAACAA+AGG + chr3_3:75766003-75766022 None:intergenic 20.0%
!! CAAATAATAAATCAACTTTG+TGG - chr3_3:75766814-75766833 Msa0473240:CDS 20.0%
! AATTGAATTCACAAAGAAAG+TGG + chr3_3:75763829-75763848 None:intergenic 25.0%
!! TGTGCCTTTTAAATTTAAAC+CGG - chr3_3:75764049-75764068 Msa0473240:CDS 25.0%
!! CTTTTAAATTTAAACCGGAA+GGG - chr3_3:75764054-75764073 Msa0473240:CDS 25.0%
!! TCTCCATTTCTTTTCAAAAT+TGG + chr3_3:75764125-75764144 None:intergenic 25.0%
! GTCTTTATACACTAAAATTG+TGG - chr3_3:75764220-75764239 Msa0473240:intron 25.0%
! AAACAAGATACTATTGGAAT+GGG + chr3_3:75764334-75764353 None:intergenic 25.0%
! TTATCCAAACAAGATACTAT+TGG + chr3_3:75764340-75764359 None:intergenic 25.0%
!! ACTTTTACAATTCATGTGAA+TGG - chr3_3:75764679-75764698 Msa0473240:intron 25.0%
! TATAACTGACAATTTGATTG+TGG - chr3_3:75764810-75764829 Msa0473240:CDS 25.0%
! ATAACTGACAATTTGATTGT+GGG - chr3_3:75764811-75764830 Msa0473240:CDS 25.0%
! ATATATTCTAAACTTGCAAC+AGG - chr3_3:75764891-75764910 Msa0473240:CDS 25.0%
! TTTAAAAAAATTGGGGAAAG+GGG + chr3_3:75765201-75765220 None:intergenic 25.0%
! ACTAAATATGTTTGTAGCTT+AGG - chr3_3:75765243-75765262 Msa0473240:intron 25.0%
!! TTAGGTTGTATTAGGAAATA+GGG - chr3_3:75765261-75765280 Msa0473240:intron 25.0%
! TAATTCAATCAAGAACAAGT+AGG + chr3_3:75765422-75765441 None:intergenic 25.0%
!!! TGTTTTTTGATTCAAAGACA+AGG + chr3_3:75765665-75765684 None:intergenic 25.0%
! TAGAAAAGACACTATAAATC+AGG - chr3_3:75765789-75765808 Msa0473240:intron 25.0%
! AGAAAAGACACTATAAATCA+GGG - chr3_3:75765790-75765809 Msa0473240:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG + chr3_3:75765907-75765926 None:intergenic 25.0%
! TTAAGTTATATATCCCATAC+AGG - chr3_3:75766215-75766234 Msa0473240:intron 25.0%
! TAAGTTATATATCCCATACA+GGG - chr3_3:75766216-75766235 Msa0473240:intron 25.0%
! TTAGCTGTGCAAAAAATAAA+AGG + chr3_3:75766302-75766321 None:intergenic 25.0%
! TCAATACTACATGGAATATT+TGG + chr3_3:75766790-75766809 None:intergenic 25.0%
!!! ATATTCCATGTAGTATTGAT+TGG - chr3_3:75766791-75766810 Msa0473240:CDS 25.0%
! AAATCTACATTCTACAATCA+TGG + chr3_3:75766848-75766867 None:intergenic 25.0%
! AGAACAGAATTTAGATTCAA+TGG + chr3_3:75766898-75766917 None:intergenic 25.0%
TCAAACAAGCAAAAGAACAA+TGG - chr3_3:75763492-75763511 Msa0473240:three_prime_UTR 30.0%
! ATGGAAAGTGTAAGTAACAT+TGG - chr3_3:75763511-75763530 Msa0473240:three_prime_UTR 30.0%
ATAGAAACCATAAAACTGCA+TGG + chr3_3:75763604-75763623 None:intergenic 30.0%
! TTTGTTGTACACTATCAGAA+AGG - chr3_3:75763650-75763669 Msa0473240:three_prime_UTR 30.0%
TTGTTGTACACTATCAGAAA+GGG - chr3_3:75763651-75763670 Msa0473240:three_prime_UTR 30.0%
AAGAAAGTGGCAAAACAAAT+AGG + chr3_3:75763816-75763835 None:intergenic 30.0%
TATGAATACTCTTGAGAGAT+AGG - chr3_3:75763879-75763898 Msa0473240:intron 30.0%
ATAGGAATGAATGCAATTGT+TGG - chr3_3:75763897-75763916 Msa0473240:intron 30.0%
GTTACTGTTGCATTAGATTT+AGG - chr3_3:75763919-75763938 Msa0473240:exon 30.0%
CCTTCCGGTTTAAATTTAAA+AGG + chr3_3:75764056-75764075 None:intergenic 30.0%
! CCTTTTAAATTTAAACCGGA+AGG - chr3_3:75764053-75764072 Msa0473240:CDS 30.0%
!! GCACCAATTTTGAAAAGAAA+TGG - chr3_3:75764119-75764138 Msa0473240:intron 30.0%
CAAACAAGATACTATTGGAA+TGG + chr3_3:75764335-75764354 None:intergenic 30.0%
CATTCCAATAGTATCTTGTT+TGG - chr3_3:75764333-75764352 Msa0473240:intron 30.0%
! AAGCTATAAGTTGCTTTCAT+AGG - chr3_3:75764470-75764489 Msa0473240:intron 30.0%
CTCACTTCTATAAACTATCT+CGG + chr3_3:75764500-75764519 None:intergenic 30.0%
TAACTGACAATTTGATTGTG+GGG - chr3_3:75764812-75764831 Msa0473240:CDS 30.0%
TTAAGGTGATCTAAATCTTC+AGG + chr3_3:75764853-75764872 None:intergenic 30.0%
AGATTTAGATCACCTTAAGA+AGG - chr3_3:75764855-75764874 Msa0473240:CDS 30.0%
AACTTGAAATTAGACACATG+AGG - chr3_3:75764971-75764990 Msa0473240:intron 30.0%
CTAGATTATCACATAATGCA+TGG + chr3_3:75765050-75765069 None:intergenic 30.0%
! TGAAATGTTAGCTTAACAGT+AGG - chr3_3:75765080-75765099 Msa0473240:intron 30.0%
! TTTGTAGCTTAGGTTGTATT+AGG - chr3_3:75765253-75765272 Msa0473240:intron 30.0%
! CTTAGGTTGTATTAGGAAAT+AGG - chr3_3:75765260-75765279 Msa0473240:intron 30.0%
CTTGAAGTGTGCATATAAAT+TGG + chr3_3:75765306-75765325 None:intergenic 30.0%
CAATTTATATGCACACTTCA+AGG - chr3_3:75765304-75765323 Msa0473240:intron 30.0%
CTTGAAACTATTTCAAGAGT+CGG + chr3_3:75765383-75765402 None:intergenic 30.0%
TGACAATTGCTTATTTGTTC+TGG - chr3_3:75765606-75765625 Msa0473240:CDS 30.0%
TCGTATAAGCAAATCAAAAC+AGG + chr3_3:75765816-75765835 None:intergenic 30.0%
!!! TGTTTTGATTTGCTTATACG+AGG - chr3_3:75765815-75765834 Msa0473240:intron 30.0%
TAATCACTTGTGAGATTGTT+TGG - chr3_3:75765851-75765870 Msa0473240:intron 30.0%
AGATTGTTTGGAAGAGTTTA+TGG - chr3_3:75765863-75765882 Msa0473240:intron 30.0%
CAAATTTATAGTTCAAGTCC+TGG - chr3_3:75766020-75766039 Msa0473240:intron 30.0%
AACCACTTGTGTAAAAAAAC+AGG - chr3_3:75766047-75766066 Msa0473240:intron 30.0%
ACCACTTGTGTAAAAAAACA+GGG - chr3_3:75766048-75766067 Msa0473240:intron 30.0%
TTGTGTAAAAAAACAGGGTA+AGG - chr3_3:75766053-75766072 Msa0473240:intron 30.0%
!! CTTTGAAGTTAGCATATCAT+AGG + chr3_3:75766331-75766350 None:intergenic 30.0%
! CCTTGTATTGCTCTTTTATT+TGG + chr3_3:75766366-75766385 None:intergenic 30.0%
CCAAATAAAAGAGCAATACA+AGG - chr3_3:75766363-75766382 Msa0473240:intron 30.0%
ATTTGGCTAAAAATGATCCA+TGG - chr3_3:75766397-75766416 Msa0473240:intron 30.0%
AAAAGAACAACAACTTGTGT+AGG + chr3_3:75766672-75766691 None:intergenic 30.0%
ATTTGCCAATCAATACTACA+TGG + chr3_3:75766799-75766818 None:intergenic 30.0%
GAATTTAGATTCAATGGAAG+AGG + chr3_3:75766892-75766911 None:intergenic 30.0%
TTCAACATTCAGAGCTTCTT+TGG - chr3_3:75763540-75763559 Msa0473240:three_prime_UTR 35.0%
!! CAAAAGTACTTTCAAAGCAG+AGG - chr3_3:75763566-75763585 Msa0473240:three_prime_UTR 35.0%
! AAAATCGCCATGCAGTTTTA+TGG - chr3_3:75763594-75763613 Msa0473240:three_prime_UTR 35.0%
TGTTGTACACTATCAGAAAG+GGG - chr3_3:75763652-75763671 Msa0473240:three_prime_UTR 35.0%
TAGCTATGAAGAAGATGATG+AGG - chr3_3:75763740-75763759 Msa0473240:three_prime_UTR 35.0%
GATCGTGATGATACTCATAA+GGG + chr3_3:75763768-75763787 None:intergenic 35.0%
AGATCGTGATGATACTCATA+AGG + chr3_3:75763769-75763788 None:intergenic 35.0%
TTATGAGTATCATCACGATC+TGG - chr3_3:75763768-75763787 Msa0473240:three_prime_UTR 35.0%
TATGAGTATCATCACGATCT+GGG - chr3_3:75763769-75763788 Msa0473240:three_prime_UTR 35.0%
ACTGTTGCATTAGATTTAGG+TGG - chr3_3:75763922-75763941 Msa0473240:CDS 35.0%
! TCCTTTTCCTTCATTGCATT+TGG - chr3_3:75763990-75764009 Msa0473240:CDS 35.0%
ACCAAATGCAATGAAGGAAA+AGG + chr3_3:75763994-75764013 None:intergenic 35.0%
TCTACCACTGAACATAACAT+GGG + chr3_3:75764295-75764314 None:intergenic 35.0%
CTTCTATAAACTATCTCGGA+TGG + chr3_3:75764496-75764515 None:intergenic 35.0%
!! TTGCACTTTAGGATCTGTTT+GGG + chr3_3:75764606-75764625 None:intergenic 35.0%
!! TTTGCACTTTAGGATCTGTT+TGG + chr3_3:75764607-75764626 None:intergenic 35.0%
TATCAGTGATGCCTAATTTC+AGG - chr3_3:75764772-75764791 Msa0473240:intron 35.0%
! TCTAAATCTTCAGGTTTCTG+TGG + chr3_3:75764844-75764863 None:intergenic 35.0%
TCTAAACTTGCAACAGGATA+AGG - chr3_3:75764897-75764916 Msa0473240:CDS 35.0%
! CTAAAAAGAGGTTTGCTTAC+AGG + chr3_3:75765000-75765019 None:intergenic 35.0%
! ATCATTTGAAGTGGCACTAA+GGG + chr3_3:75765170-75765189 None:intergenic 35.0%
! TATCATTTGAAGTGGCACTA+AGG + chr3_3:75765171-75765190 None:intergenic 35.0%
TTAGAATGGGCAATTTCTGA+GGG - chr3_3:75765530-75765549 Msa0473240:CDS 35.0%
AAATAAGCAATTGTCACTGC+TGG + chr3_3:75765602-75765621 None:intergenic 35.0%
TTGATTCAAAGACAAGGTGA+GGG + chr3_3:75765659-75765678 None:intergenic 35.0%
TTTGATTCAAAGACAAGGTG+AGG + chr3_3:75765660-75765679 None:intergenic 35.0%
TATTGTTGCACAAAACCTCT+TGG - chr3_3:75765722-75765741 Msa0473240:intron 35.0%
GAACTATCATTGAGAGCTTA+TGG + chr3_3:75765931-75765950 None:intergenic 35.0%
!!! ACCCTGTTTTTTTACACAAG+TGG + chr3_3:75766052-75766071 None:intergenic 35.0%
TTTGAATCCATGTCAGATTG+AGG + chr3_3:75766242-75766261 None:intergenic 35.0%
ACAAGGAGCAACTTATGATT+TGG - chr3_3:75766380-75766399 Msa0473240:intron 35.0%
!! TTTTGGGGATATAGCAGATT+GGG - chr3_3:75766452-75766471 Msa0473240:intron 35.0%
AGACTAATACCTAATTCGTC+AGG + chr3_3:75766520-75766539 None:intergenic 35.0%
ACACACAAAATCCAATATCC+TGG + chr3_3:75766559-75766578 None:intergenic 35.0%
ATGCTATACTTGTGATTGAC+AGG - chr3_3:75766628-75766647 Msa0473240:intron 35.0%
!! ACAAGTTGTTGTTCTTTTGC+AGG - chr3_3:75766674-75766693 Msa0473240:CDS 35.0%
!! TTGTTGTTCTTTTGCAGGAT+TGG - chr3_3:75766679-75766698 Msa0473240:CDS 35.0%
ATAGGTATATTGCCTGTAAC+TGG - chr3_3:75766762-75766781 Msa0473240:CDS 35.0%
GAATATTTGGTACCAGTTAC+AGG + chr3_3:75766777-75766796 None:intergenic 35.0%
GTTGTACACTATCAGAAAGG+GGG - chr3_3:75763653-75763672 Msa0473240:three_prime_UTR 40.0%
AGATTTAGATACCCTCTTGC+TGG + chr3_3:75763695-75763714 None:intergenic 40.0%
ACACAGACCAAATGCAATGA+AGG + chr3_3:75764000-75764019 None:intergenic 40.0%
! GGTGCTTTTCAGAAATGAAG+AGG + chr3_3:75764104-75764123 None:intergenic 40.0%
TCTACCCATGTTATGTTCAG+TGG - chr3_3:75764288-75764307 Msa0473240:intron 40.0%
CTCTACCACTGAACATAACA+TGG + chr3_3:75764296-75764315 None:intergenic 40.0%
GATACTATTGGAATGGGAAG+TGG + chr3_3:75764328-75764347 None:intergenic 40.0%
CAGCTTATGACAAAAGCTGA+TGG - chr3_3:75764527-75764546 Msa0473240:intron 40.0%
CAGCACAAAGTTTGCACTTT+AGG + chr3_3:75764617-75764636 None:intergenic 40.0%
! ATCTTCAGGTTTCTGTGGTT+GGG + chr3_3:75764839-75764858 None:intergenic 40.0%
! AATCTTCAGGTTTCTGTGGT+TGG + chr3_3:75764840-75764859 None:intergenic 40.0%
GATCACCTTAAGAAGGAAGA+AGG - chr3_3:75764862-75764881 Msa0473240:CDS 40.0%
! AGGATAAGGATGCTGAGTTT+TGG - chr3_3:75764911-75764930 Msa0473240:CDS 40.0%
! GGATAAGGATGCTGAGTTTT+GGG - chr3_3:75764912-75764931 Msa0473240:CDS 40.0%
! GATAAGGATGCTGAGTTTTG+GGG - chr3_3:75764913-75764932 Msa0473240:CDS 40.0%
TCTCTGGCGTTGTAATTTCT+AGG - chr3_3:75765105-75765124 Msa0473240:intron 40.0%
CTCTGGCGTTGTAATTTCTA+GGG - chr3_3:75765106-75765125 Msa0473240:intron 40.0%
TTTGATCCAAACTCTTTGCG+AGG - chr3_3:75765482-75765501 Msa0473240:CDS 40.0%
TCTAAGGATGACACTGCTTT+AGG + chr3_3:75765515-75765534 None:intergenic 40.0%
AAGCAGTGTCATCCTTAGAA+TGG - chr3_3:75765516-75765535 Msa0473240:CDS 40.0%
AGCAGTGTCATCCTTAGAAT+GGG - chr3_3:75765517-75765536 Msa0473240:CDS 40.0%
CTCAGAAATTGCCCATTCTA+AGG + chr3_3:75765531-75765550 None:intergenic 40.0%
CTTAGAATGGGCAATTTCTG+AGG - chr3_3:75765529-75765548 Msa0473240:CDS 40.0%
TTGCACAAAACCTCTTGGTT+TGG - chr3_3:75765727-75765746 Msa0473240:intron 40.0%
!! ACAAAACCTCTTGGTTTGGT+GGG - chr3_3:75765731-75765750 Msa0473240:intron 40.0%
TTTGGTGGGAACAACTAACA+AGG - chr3_3:75765745-75765764 Msa0473240:intron 40.0%
TTTCTACTCTTAGCAGCTCA+AGG + chr3_3:75765775-75765794 None:intergenic 40.0%
! TTACACAAGTGGTTGTTTCC+AGG + chr3_3:75766041-75766060 None:intergenic 40.0%
GCTACGTACAATACACCAAA+TGG - chr3_3:75766075-75766094 Msa0473240:intron 40.0%
ACGTACAATACACCAAATGG+CGG - chr3_3:75766078-75766097 Msa0473240:intron 40.0%
CTAACTTCAAAGAGACCTTG+TGG - chr3_3:75766339-75766358 Msa0473240:intron 40.0%
!! GCTCTTTTATTTGGTCCACA+AGG + chr3_3:75766357-75766376 None:intergenic 40.0%
GGCTAAAAATGATCCATGGA+AGG - chr3_3:75766401-75766420 Msa0473240:intron 40.0%
!! CTTTTGGGGATATAGCAGAT+TGG - chr3_3:75766451-75766470 Msa0473240:intron 40.0%
CTATTGTGAAAATCAGCTCC+AGG - chr3_3:75766538-75766557 Msa0473240:intron 40.0%
GAAAATCAGCTCCAGGATAT+TGG - chr3_3:75766545-75766564 Msa0473240:intron 40.0%
!!! CTCTCAAGTTTTGAGCACTA+TGG + chr3_3:75766714-75766733 None:intergenic 40.0%
AAGAGAATCCTACCAGCAAG+AGG - chr3_3:75763680-75763699 Msa0473240:three_prime_UTR 45.0%
AGAGAATCCTACCAGCAAGA+GGG - chr3_3:75763681-75763700 Msa0473240:three_prime_UTR 45.0%
TTAGATACCCTCTTGCTGGT+AGG + chr3_3:75763691-75763710 None:intergenic 45.0%
GAAGAGGATCTCTACTCCTT+CGG + chr3_3:75764088-75764107 None:intergenic 45.0%
CCACACCTTCTTCCTTCTTA+AGG + chr3_3:75764870-75764889 None:intergenic 45.0%
CCTTAAGAAGGAAGAAGGTG+TGG - chr3_3:75764867-75764886 Msa0473240:CDS 45.0%
AGCTTAACAGTAGGAGTCTC+TGG - chr3_3:75765089-75765108 Msa0473240:intron 45.0%
ACAGAATCCAAAACACGTCG+AGG - chr3_3:75765129-75765148 Msa0473240:intron 45.0%
CGTCGAGGACGATTGTAAAA+TGG - chr3_3:75765144-75765163 Msa0473240:intron 45.0%
! TGGGCAATTTCTGAGGGAAA+AGG - chr3_3:75765536-75765555 Msa0473240:CDS 45.0%
GTTTATGTGCACTGTACTGC+AGG - chr3_3:75765563-75765582 Msa0473240:CDS 45.0%
!! CACAAAACCTCTTGGTTTGG+TGG - chr3_3:75765730-75765749 Msa0473240:intron 45.0%
CGTACAATACACCAAATGGC+GGG - chr3_3:75766079-75766098 Msa0473240:intron 45.0%
TGGTCTGGAAGACTCTCAAA+TGG + chr3_3:75766429-75766448 None:intergenic 45.0%
! AGTCTTCCAGACCATGCTTT+TGG - chr3_3:75766435-75766454 Msa0473240:intron 45.0%
! GTCTTCCAGACCATGCTTTT+GGG - chr3_3:75766436-75766455 Msa0473240:intron 45.0%
! TCTTCCAGACCATGCTTTTG+GGG - chr3_3:75766437-75766456 Msa0473240:intron 45.0%
! ATATCCCCAAAAGCATGGTC+TGG + chr3_3:75766444-75766463 None:intergenic 45.0%
CTGCTATATCCCCAAAAGCA+TGG + chr3_3:75766449-75766468 None:intergenic 45.0%
TTCGTGGAACCTGACGAATT+AGG - chr3_3:75766508-75766527 Msa0473240:intron 45.0%
GATTGACAGGTCAGTGCTTA+TGG - chr3_3:75766641-75766660 Msa0473240:intron 45.0%
!!! TATTTATTTTCATAAAAAAA+GGG + chr3_3:75766154-75766173 None:intergenic 5.0%
!! TTTAAACCGGAAGGGTGCTG+TGG - chr3_3:75764062-75764081 Msa0473240:CDS 50.0%
! CAATCGTCCTCGACGTGTTT+TGG + chr3_3:75765139-75765158 None:intergenic 50.0%
AGTGCACCTCGCAAAGAGTT+TGG + chr3_3:75765491-75765510 None:intergenic 50.0%
GTTGTTCCCACCAAACCAAG+AGG + chr3_3:75765740-75765759 None:intergenic 50.0%
GTCAGATTGAGGCCCTGTAT+GGG + chr3_3:75766231-75766250 None:intergenic 50.0%
TGTCAGATTGAGGCCCTGTA+TGG + chr3_3:75766232-75766251 None:intergenic 50.0%
TACAGGGCCTCAATCTGACA+TGG - chr3_3:75766232-75766251 Msa0473240:intron 50.0%
CTCTCAAATGGCTCCTTCCA+TGG + chr3_3:75766417-75766436 None:intergenic 50.0%
GGGATATAGCAGATTGGGAG+AGG - chr3_3:75766457-75766476 Msa0473240:intron 50.0%
GTGCACTGTACTGCAGGACT+TGG - chr3_3:75765569-75765588 Msa0473240:CDS 55.0%
ATACGCAGGGGTCTAGGAAG+GGG + chr3_3:75766106-75766125 None:intergenic 55.0%
CATACGCAGGGGTCTAGGAA+GGG + chr3_3:75766107-75766126 None:intergenic 55.0%
TTCCTAGACCCCTGCGTATG+CGG - chr3_3:75766107-75766126 Msa0473240:intron 55.0%
TAAAGCTCCCGCATACGCAG+GGG + chr3_3:75766118-75766137 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr3_3:75766119-75766138 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr3_3:75766120-75766139 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG - chr3_3:75766124-75766143 Msa0473240:intron 55.0%
TAGGAAGGGGTCCCGCCATT+TGG + chr3_3:75766093-75766112 None:intergenic 60.0%
GCATACGCAGGGGTCTAGGA+AGG + chr3_3:75766108-75766127 None:intergenic 60.0%
TCCTAGACCCCTGCGTATGC+GGG - chr3_3:75766108-75766127 Msa0473240:intron 60.0%
!!! CGCGGACGCGGTTTTGAATC+AGG + chr3_3:75766485-75766504 None:intergenic 60.0%
GTCAGGTTCCACGAAGAGCG+CGG + chr3_3:75766503-75766522 None:intergenic 60.0%
CTTCGGCCACAGCACCCTTC+CGG + chr3_3:75764071-75764090 None:intergenic 65.0%
TCCCGCATACGCAGGGGTCT+AGG + chr3_3:75766112-75766131 None:intergenic 65.0%
! TTCCACGAAGAGCGCGGACG+CGG + chr3_3:75766497-75766516 None:intergenic 65.0%
!! CGGAAGGGTGCTGTGGCCGA+AGG - chr3_3:75764069-75764088 Msa0473240:CDS 70.0%
AACCGCGTCCGCGCTCTTCG+TGG - chr3_3:75766492-75766511 Msa0473240:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75763477 75766965 75763477 ID=Msa0473240;Name=Msa0473240
chr3_3 mRNA 75763477 75766965 75763477 ID=Msa0473240-mRNA-1;Parent=Msa0473240;Name=Msa0473240-mRNA-1;_AED=0.13;_eAED=0.13;_QI=34|1|1|1|0.75|0.6|5|324|286
chr3_3 exon 75763477 75763792 75763477 ID=Msa0473240-mRNA-1:exon:19741;Parent=Msa0473240-mRNA-1
chr3_3 exon 75763913 75764124 75763913 ID=Msa0473240-mRNA-1:exon:19740;Parent=Msa0473240-mRNA-1
chr3_3 exon 75764799 75764969 75764799 ID=Msa0473240-mRNA-1:exon:19739;Parent=Msa0473240-mRNA-1
chr3_3 exon 75765443 75765648 75765443 ID=Msa0473240-mRNA-1:exon:19738;Parent=Msa0473240-mRNA-1
chr3_3 exon 75766652 75766965 75766652 ID=Msa0473240-mRNA-1:exon:19737;Parent=Msa0473240-mRNA-1
chr3_3 five_prime_UTR 75766932 75766965 75766932 ID=Msa0473240-mRNA-1:five_prime_utr;Parent=Msa0473240-mRNA-1
chr3_3 CDS 75766652 75766931 75766652 ID=Msa0473240-mRNA-1:cds;Parent=Msa0473240-mRNA-1
chr3_3 CDS 75765443 75765648 75765443 ID=Msa0473240-mRNA-1:cds;Parent=Msa0473240-mRNA-1
chr3_3 CDS 75764799 75764969 75764799 ID=Msa0473240-mRNA-1:cds;Parent=Msa0473240-mRNA-1
chr3_3 CDS 75763921 75764124 75763921 ID=Msa0473240-mRNA-1:cds;Parent=Msa0473240-mRNA-1
chr3_3 three_prime_UTR 75763913 75763920 75763913 ID=Msa0473240-mRNA-1:three_prime_utr;Parent=Msa0473240-mRNA-1
chr3_3 three_prime_UTR 75763477 75763792 75763477 ID=Msa0473240-mRNA-1:three_prime_utr;Parent=Msa0473240-mRNA-1
Gene Sequence

>Msa0473240

ATGGAAAGTGTAAGTAACATTGGTTTCTCTTCAACATTCAGAGCTTCTTTGGACACAAAAGTACTTTCAAAGCAGAGGAAACAAAAATCGCCATGCAGTTTTATGGTTTCTATCAATTACTCTATTAGGATGAACAAAATTTGTTGTACACTATCAGAAAGGGGGATTGAAGAGAATCCTACCAGCAAGAGGGTATCTAAATCTAATGATTTAATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGGAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATTTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGTGAACTTGAAATTAGACACATGAGGAGACCTGCAGTAGACTTTGATCCAAACTCTTTGCGAGGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGCGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>Msa0473240

MESVSNIGFSSTFRASLDTKVLSKQRKQKSPCSFMVSINYSIRMNKICCTLSERGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDLDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRGALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT*