AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728930 MtrunA17_Chr5g0435751 89.408 642 29 2 1 623 1 622 0.0 1173
Msa0728930 MtrunA17_Chr3g0112341 75.272 643 113 6 25 623 30 670 0.0 986
Msa0728930 MtrunA17_Chr1g0159741 64.991 577 174 4 70 618 80 656 0.0 800
Msa0728930 MtrunA17_Chr3g0130381 44.182 550 262 12 82 600 224 759 1.56e-156 469
Msa0728930 MtrunA17_Chr1g0187601 45.143 525 244 9 106 599 78 589 1.70e-156 463
Msa0728930 MtrunA17_Chr3g0125511 47.262 493 228 8 133 596 232 721 3.41e-156 467
Msa0728930 MtrunA17_Chr1g0167381 45.136 514 228 10 123 597 90 588 5.11e-156 462
Msa0728930 MtrunA17_Chr1g0183721 45.087 519 237 9 123 605 60 566 6.12e-155 458
Msa0728930 MtrunA17_Chr5g0437501 43.860 513 242 10 125 601 91 593 8.98e-151 448
Msa0728930 MtrunA17_Chr3g0113981 44.531 512 249 11 113 599 153 654 1.67e-150 450
Msa0728930 MtrunA17_Chr8g0384431 42.676 553 274 11 82 603 252 792 7.74e-150 452
Msa0728930 MtrunA17_Chr8g0372471 46.881 497 228 10 133 601 386 874 7.25e-149 452
Msa0728930 MtrunA17_Chr8g0350391 41.869 535 266 12 121 618 101 627 6.81e-144 432
Msa0728930 MtrunA17_Chr1g0203741 43.074 527 255 13 125 614 92 610 7.82e-141 424
Msa0728930 MtrunA17_Chr8g0388881 40.185 540 263 12 122 618 95 617 8.25e-141 423
Msa0728930 MtrunA17_Chr7g0246701 40.951 547 261 14 117 618 93 622 4.58e-140 422
Msa0728930 MtrunA17_Chr8g0361791 40.801 549 275 14 98 614 63 593 7.24e-140 420
Msa0728930 MtrunA17_Chr6g0472571 39.848 527 270 11 124 614 104 619 3.37e-139 419
Msa0728930 MtrunA17_Chr5g0409411 40.357 560 290 12 93 618 38 587 2.17e-137 414
Msa0728930 MtrunA17_Chr8g0369481 41.176 527 266 12 125 618 70 585 7.14e-136 409
Msa0728930 MtrunA17_Chr5g0416991 41.243 531 267 13 116 614 75 592 2.42e-135 409
Msa0728930 MtrunA17_Chr4g0055031 40.755 530 263 13 121 614 82 596 8.38e-134 405
Msa0728930 MtrunA17_Chr7g0246681 40.145 553 283 12 100 620 50 586 8.47e-133 401
Msa0728930 MtrunA17_Chr7g0214551 41.779 517 258 11 118 598 36 545 1.42e-132 400
Msa0728930 MtrunA17_Chr1g0171781 43.600 500 245 8 126 596 87 578 1.95e-132 401
Msa0728930 MtrunA17_Chr8g0350351 39.736 531 276 11 118 618 81 597 1.28e-130 396
Msa0728930 MtrunA17_Chr3g0092501 39.926 541 279 15 105 614 65 590 2.72e-130 395
Msa0728930 MtrunA17_Chr1g0155141 40.594 505 252 15 124 600 198 682 6.26e-113 353
Msa0728930 MtrunA17_Chr3g0115931 33.395 542 311 13 121 618 150 685 2.06e-98 315
Msa0728930 MtrunA17_Chr5g0426281 33.024 539 303 13 123 618 144 667 9.69e-97 310
Msa0728930 MtrunA17_Chr5g0404771 49.077 271 108 5 103 348 292 557 1.38e-78 260
Msa0728930 MtrunA17_Chr5g0404761 41.045 268 142 8 350 606 1 263 1.23e-59 201
Msa0728930 MtrunA17_Chr4g0043121 30.194 361 202 11 120 450 81 421 4.77e-45 166
Msa0728930 MtrunA17_Chr4g0043131 50.345 145 69 2 476 619 39 181 1.44e-42 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728930 AT2G39750.1 64.986 694 172 6 1 623 1 694 0.0 936
Msa0728930 AT5G06050.1 63.524 647 198 5 10 618 15 661 0.0 889
Msa0728930 AT1G77260.1 61.920 646 205 7 10 620 16 655 0.0 857
Msa0728930 AT2G40280.1 42.508 614 258 18 19 600 18 568 1.05e-157 466
Msa0728930 AT3G23300.2 44.639 513 246 8 123 604 77 582 5.41e-156 462
Msa0728930 AT3G23300.1 44.639 513 246 8 123 604 77 582 5.41e-156 462
Msa0728930 AT1G29470.1 45.524 525 249 10 114 606 227 746 8.66e-155 464
Msa0728930 AT1G29470.2 45.524 525 249 10 114 606 227 746 8.66e-155 464
Msa0728930 AT4G14360.1 45.059 506 240 8 123 597 74 572 1.29e-154 458
Msa0728930 AT4G14360.2 45.059 506 240 8 123 597 74 572 1.29e-154 458
Msa0728930 AT2G34300.2 46.573 496 231 8 134 600 250 740 3.22e-153 460
Msa0728930 AT2G34300.3 46.573 496 231 8 134 600 250 740 3.22e-153 460
Msa0728930 AT2G34300.1 46.573 496 231 8 134 600 250 740 3.22e-153 460
Msa0728930 AT3G51070.1 45.951 531 245 13 104 600 350 872 2.56e-152 462
Msa0728930 AT5G64030.1 43.345 556 276 11 79 605 259 804 4.23e-152 459
Msa0728930 AT3G56080.1 45.261 517 241 11 111 600 94 595 5.84e-152 452
Msa0728930 AT1G04430.1 43.364 535 258 10 99 599 59 582 9.55e-152 452
Msa0728930 AT1G04430.3 43.364 535 258 10 99 599 59 582 9.55e-152 452
Msa0728930 AT1G04430.2 43.364 535 258 10 99 599 59 582 9.55e-152 452
Msa0728930 AT2G45750.1 42.722 529 255 11 125 613 87 607 2.83e-143 430
Msa0728930 AT4G10440.1 40.569 562 268 14 101 618 74 613 1.24e-142 429
Msa0728930 AT5G14430.2 43.893 524 240 11 115 596 64 575 3.38e-141 424
Msa0728930 AT5G14430.1 43.893 524 240 11 115 596 64 575 3.72e-141 424
Msa0728930 AT1G33170.1 41.341 537 255 12 122 614 107 627 8.44e-140 421
Msa0728930 AT1G26850.2 42.185 531 259 14 121 614 82 601 1.77e-138 417
Msa0728930 AT1G26850.1 42.185 531 259 14 121 614 82 601 1.77e-138 417
Msa0728930 AT3G56080.2 46.398 472 211 11 111 555 94 550 4.86e-138 414
Msa0728930 AT3G51070.2 46.708 486 217 13 104 555 350 827 3.90e-137 421
Msa0728930 AT4G19120.1 39.748 556 278 14 104 618 48 587 6.79e-135 407
Msa0728930 AT4G19120.2 39.748 556 278 14 104 618 48 587 6.79e-135 407
Msa0728930 AT4G00750.1 41.199 534 264 14 121 614 92 615 7.88e-135 408
Msa0728930 AT1G31850.1 39.020 551 286 12 105 618 56 593 1.21e-132 402
Msa0728930 AT1G31850.2 39.020 551 286 12 105 618 56 593 1.21e-132 402
Msa0728930 AT1G31850.4 39.020 551 286 12 105 618 56 593 1.21e-132 402
Msa0728930 AT1G31850.3 39.020 551 286 12 105 618 56 593 1.21e-132 402
Msa0728930 AT4G00740.1 39.439 535 274 12 117 618 73 590 6.17e-130 395
Msa0728930 AT4G00740.2 39.439 535 274 12 117 618 73 590 6.17e-130 395
Msa0728930 AT5G04060.1 41.109 523 264 12 127 618 85 594 2.04e-129 393
Msa0728930 AT2G43200.2 41.373 510 255 15 125 600 91 590 8.94e-127 387
Msa0728930 AT2G43200.1 41.373 510 255 15 125 600 91 590 8.94e-127 387
Msa0728930 AT4G18030.1 39.775 533 265 15 125 618 85 600 1.81e-122 376
Msa0728930 AT3G10200.1 40.990 505 251 11 127 598 74 564 1.59e-121 373
Msa0728930 AT3G10200.2 41.875 480 228 12 127 571 74 537 1.70e-116 360
Msa0728930 AT1G19430.1 40.845 497 240 14 135 600 232 705 1.85e-114 358
Msa0728930 AT1G19430.3 40.845 497 240 14 135 600 232 705 1.85e-114 358
Msa0728930 AT4G19120.3 38.758 467 230 13 104 529 48 499 5.37e-104 324
Msa0728930 AT1G26850.3 40.185 433 211 14 121 516 82 503 1.13e-97 308
Msa0728930 AT1G78240.1 32.413 543 310 14 123 618 144 676 4.39e-92 299
Msa0728930 AT1G78240.2 32.413 543 310 14 123 618 144 676 4.39e-92 299
Msa0728930 AT1G13860.4 32.900 538 305 16 121 618 77 598 2.91e-90 292
Msa0728930 AT1G13860.3 32.900 538 305 16 121 618 77 598 2.91e-90 292
Msa0728930 AT1G13860.1 32.900 538 305 16 121 618 77 598 2.91e-90 292
Msa0728930 AT1G13860.5 32.900 538 305 16 121 618 77 598 2.91e-90 292
Msa0728930 AT2G03480.1 32.437 558 313 17 104 618 65 601 1.15e-89 290
Msa0728930 AT2G03480.2 31.720 558 306 14 104 618 65 590 1.69e-89 290
Msa0728930 AT1G13860.2 35.385 455 247 14 195 618 4 442 2.67e-87 279
Msa0728930 AT1G19430.2 36.623 385 193 12 135 489 232 595 5.61e-66 227
Msa0728930 AT2G03480.3 29.118 340 202 10 104 411 65 397 1.18e-41 156

Find 180 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAGAATTTGTTGAAAT+TGG 0.181075 5_1:-35285198 None:intergenic
GGGCAGGAGGGTACTTTGTC+TGG 0.202993 5_1:+35288390 Msa0728930:CDS
ACTGTCAAAATTAAGAAATT+AGG 0.217958 5_1:+35285257 Msa0728930:CDS
ACAAAGAATCTAGACTAATT+TGG 0.238768 5_1:-35291666 None:intergenic
GTTCACGCTGCAGGATTAAT+TGG 0.245745 5_1:+35287557 Msa0728930:CDS
GATCTGCTCCATGTATAAAT+TGG 0.254182 5_1:-35287189 None:intergenic
ACAGTTTCTGGTGTTTGGTT+AGG 0.266861 5_1:-35285239 None:intergenic
TTAAGGCCGAATCAAAATAT+TGG 0.277578 5_1:+35290189 Msa0728930:CDS
GGTTATAAAACTCATGTTCT+TGG 0.278732 5_1:+35291345 Msa0728930:three_prime_UTR
ACATAATGACCTTGGAAATA+TGG 0.304152 5_1:-35287222 None:intergenic
TTGAAGAATTTGTTGAAATT+GGG 0.305965 5_1:-35285197 None:intergenic
TCAATACTTGAGACAAGTTT+AGG 0.308942 5_1:+35291406 Msa0728930:three_prime_UTR
CTGTCAAAATTAAGAAATTA+GGG 0.311996 5_1:+35285258 Msa0728930:CDS
GGCTGTGGTGTAGCTAGTTT+TGG 0.315277 5_1:+35287370 Msa0728930:CDS
TTCAATCGTTTCTCCTCAAC+TGG 0.316451 5_1:-35285521 None:intergenic
TTTATGCTTTGAAGCCTATC+AGG 0.317967 5_1:-35290134 None:intergenic
ACTCGTCTTGTGGAAGATAA+AGG 0.320120 5_1:+35287109 Msa0728930:CDS
CTGAGGACCCAGACAATATC+TGG 0.343317 5_1:+35289084 Msa0728930:CDS
TGTTTGGTTAGGGTTGATTA+TGG 0.343676 5_1:-35285228 None:intergenic
AAGGATAAGTTCAAGTTTCC+AGG 0.349433 5_1:+35287157 Msa0728930:CDS
CTCCAGAGTCCATACATATA+AGG 0.356571 5_1:-35291455 None:intergenic
TAACCCAGCTGTCAAGATTC+TGG 0.356752 5_1:-35290418 None:intergenic
ATGAATGTTGTTCCTGTTAG+TGG 0.356759 5_1:+35290440 Msa0728930:CDS
TGATTCTCATGAACATCCTT+TGG 0.357728 5_1:-35287436 None:intergenic
ATCTTACTACTCGTCTTTGC+TGG 0.357973 5_1:+35288955 Msa0728930:CDS
CAATTGCCTGAGAATGGATA+TGG 0.365506 5_1:+35290071 Msa0728930:CDS
TTATCATACAGGCAAGATAC+TGG 0.375320 5_1:-35291584 None:intergenic
TCAGACCGCAAGAGCTGATT+AGG 0.383699 5_1:+35291504 Msa0728930:three_prime_UTR
ATGGTTCTTGACATCACATT+TGG 0.384518 5_1:+35287319 Msa0728930:CDS
GTTTGCAAACTTCACCTGAT+AGG 0.386319 5_1:+35290120 Msa0728930:CDS
CAGTTTCTGGTGTTTGGTTA+GGG 0.386402 5_1:-35285238 None:intergenic
CTCGTCTTGTGGAAGATAAA+GGG 0.387548 5_1:+35287110 Msa0728930:CDS
GGAGAAACGATTGAATTGTT+TGG 0.391998 5_1:+35285529 Msa0728930:CDS
ATGGACATGAGAGCTGGTTT+TGG 0.393652 5_1:+35290275 Msa0728930:CDS
TTGCAAACGTGCAGGCCATT+TGG 0.402548 5_1:-35290105 None:intergenic
ACATGCAAGTTATAGGATCT+TGG 0.405190 5_1:+35291285 Msa0728930:CDS
CACCACGCTCAAGAGCAAAT+TGG 0.406873 5_1:-35287462 None:intergenic
GGCGGAGGTGGATGGTTTCA+TGG 0.407371 5_1:-35285036 None:intergenic
GCAAATGCTGCCACCATCGC+TGG 0.409206 5_1:-35287487 None:intergenic
ATCTCACTTCCTTATATGTA+TGG 0.413943 5_1:+35291446 Msa0728930:three_prime_UTR
AGGGTCCACATGCAAGTTAT+AGG 0.415414 5_1:+35291278 Msa0728930:CDS
GAAGAAATTTGAAATGTGTA+AGG 0.417940 5_1:+35285403 Msa0728930:CDS
CGAGGTTGGGGAATTTGATC+CGG 0.418776 5_1:+35285316 Msa0728930:CDS
TGGATAATGTTAATGAGATC+AGG 0.419413 5_1:+35285453 Msa0728930:CDS
GATGAGATTAAGAAATGTTA+TGG 0.419508 5_1:+35290256 Msa0728930:CDS
AAGATGGGTATGTTGCAATA+TGG 0.422642 5_1:+35288991 Msa0728930:CDS
CCGAGATTCTCTTTCTATCA+TGG 0.426552 5_1:+35291195 Msa0728930:CDS
CTCATGTTTATAAACTGGTT+GGG 0.430395 5_1:-35288417 None:intergenic
AGCTGGAATCGGTGGAGAGA+GGG 0.430443 5_1:+35285477 Msa0728930:CDS
ACACTATACCAGATATTGTC+TGG 0.432522 5_1:-35289092 None:intergenic
GTAGTGTTTCTTTATCATAC+AGG 0.432715 5_1:-35291595 None:intergenic
ATAAATTGGGTGCCACCTCC+TGG 0.434844 5_1:-35287175 None:intergenic
CACAATGTCCGTTGCTCCAA+AGG 0.435310 5_1:+35287420 Msa0728930:CDS
TGATACATTGTTCACGCTGC+AGG 0.436413 5_1:+35287548 Msa0728930:CDS
TGCTTTCTGTTGAGAAGAAA+AGG 0.440670 5_1:+35290688 Msa0728930:CDS
AAGGTGTTTGAGCCACTAAC+AGG 0.441133 5_1:-35290452 None:intergenic
ACCACGCGGTTGATGCAATC+AGG 0.443189 5_1:+35291324 Msa0728930:exon
GAATTCCCCATTGCAGCTGC+AGG 0.443319 5_1:-35291385 None:intergenic
TGTCTGATGAATTCGAGGTT+GGG 0.449402 5_1:+35285303 Msa0728930:CDS
ATGATCCCTGCAGCTGCAAT+GGG 0.451019 5_1:+35291379 Msa0728930:three_prime_UTR
GCTCATGTTTATAAACTGGT+TGG 0.454638 5_1:-35288418 None:intergenic
GAGTGAGTATATACCGTGTT+TGG 0.455260 5_1:+35285433 Msa0728930:CDS
TATTGTCTGGGTCCTCAGTT+GGG 0.456375 5_1:-35289079 None:intergenic
TTTGCTCCATATCCATTCTC+AGG 0.461360 5_1:-35290077 None:intergenic
TGCAGAAGATCATAGGTTCT+TGG 0.461663 5_1:-35290654 None:intergenic
GCAAAATTTAGAAGAACAAT+GGG 0.462392 5_1:+35288439 Msa0728930:CDS
TAGACCAGAATCTTGACAGC+TGG 0.471760 5_1:+35290414 Msa0728930:CDS
TGAAGCATGCAGAAGATCAT+AGG 0.472661 5_1:-35290661 None:intergenic
ATATTGTCTGGGTCCTCAGT+TGG 0.472985 5_1:-35289080 None:intergenic
TCAGAATATAAGAGTTGCTC+TGG 0.472998 5_1:+35287342 Msa0728930:CDS
TGATCGGAGTTATGCATGAT+TGG 0.481628 5_1:+35290498 Msa0728930:CDS
ATCTTCCACAAGACGAGTGT+GGG 0.483729 5_1:-35287104 None:intergenic
GTTCTTGGATAAGTGTCAAA+TGG 0.485390 5_1:-35290639 None:intergenic
GAGTTGCTGTTGAGAGAGAT+TGG 0.486383 5_1:-35285129 None:intergenic
GGCAGGAGGGTACTTTGTCT+GGG 0.486517 5_1:+35288391 Msa0728930:CDS
GAAATTAGGGATTCTGAATG+AGG 0.487572 5_1:+35285271 Msa0728930:CDS
GCCGTCACTTTCTTCTACCT+CGG 0.488561 5_1:+35285095 Msa0728930:CDS
TGTGCTTCATCCACATAATC+CGG 0.490053 5_1:-35285335 None:intergenic
ATCTCTCAATTGCCTGAGAA+TGG 0.494457 5_1:+35290065 Msa0728930:CDS
TTCTATCATGGACGAGCTTG+TGG 0.496750 5_1:+35291207 Msa0728930:CDS
ATCTGCTCCATGTATAAATT+GGG 0.499974 5_1:-35287188 None:intergenic
AGCAAAATTTAGAAGAACAA+TGG 0.501263 5_1:+35288438 Msa0728930:CDS
GATGAATGAGTCGGCGGAGG+TGG 0.502778 5_1:-35285048 None:intergenic
GTTATGTACGTGCTTACCAT+TGG 0.503666 5_1:+35290228 Msa0728930:CDS
AAGTTCAAGTTTCCAGGAGG+TGG 0.507980 5_1:+35287163 Msa0728930:CDS
TTGAAGCTAATAGGATGCTA+AGG 0.509046 5_1:+35288369 Msa0728930:CDS
TGTTAATGAGATCAGGAAGC+TGG 0.510397 5_1:+35285460 Msa0728930:CDS
GTCTGATGAATTCGAGGTTG+GGG 0.514617 5_1:+35285304 Msa0728930:CDS
TGAAGCACAAGTTGAAGATA+AGG 0.514912 5_1:+35285349 Msa0728930:CDS
GGAATTTGATCCGGATTATG+TGG 0.518256 5_1:+35285325 Msa0728930:CDS
CTCATCAATCATGCTTGAGA+TGG 0.518304 5_1:+35291138 Msa0728930:CDS
TGAAGAATTTGTTGAAATTG+GGG 0.529708 5_1:-35285196 None:intergenic
ATGTCTGATGAATTCGAGGT+TGG 0.530829 5_1:+35285302 Msa0728930:CDS
GATGATCCCTGCAGCTGCAA+TGG 0.532193 5_1:+35291378 Msa0728930:three_prime_UTR
GGTGAAGTTTGCAAACGTGC+AGG 0.533374 5_1:-35290113 None:intergenic
TTCCTTATATGTATGGACTC+TGG 0.533652 5_1:+35291453 Msa0728930:three_prime_UTR
ATGGAGCAAATCTTACCAAA+TGG 0.534971 5_1:+35290090 Msa0728930:CDS
TTTGATGAATGAGTCGGCGG+AGG 0.537476 5_1:-35285051 None:intergenic
ATAAGAGTTGCTCTGGATGT+TGG 0.539483 5_1:+35287349 Msa0728930:CDS
AACAATGTCTGATGAATTCG+AGG 0.540389 5_1:+35285298 Msa0728930:CDS
CAATCATGCTTGAGATGGAT+CGG 0.541237 5_1:+35291143 Msa0728930:CDS
TGTTCCCCACACTCGTCTTG+TGG 0.544319 5_1:+35287099 Msa0728930:CDS
TTAATCTCATCGTCTTCCAA+TGG 0.545743 5_1:-35290244 None:intergenic
TTGGTTAGGGTTGATTATGG+CGG 0.546981 5_1:-35285225 None:intergenic
TGAGATCAGGAAGCTGGAAT+CGG 0.547312 5_1:+35285466 Msa0728930:CDS
GATTTGATCGGTTGTTGTTG+TGG 0.547320 5_1:-35285165 None:intergenic
GGCTTGCCAGCCGATAGCCT+TGG 0.547916 5_1:-35291236 None:intergenic
ATCAAATCAAAAGCTTGACT+TGG 0.549295 5_1:-35287529 None:intergenic
TAGATAGCAGCTATTGTCGA+AGG 0.550514 5_1:-35289021 None:intergenic
GTGGAGATTGCCAAGGCTAT+CGG 0.550744 5_1:+35291226 Msa0728930:CDS
GCTGGAATCGGTGGAGAGAG+GGG 0.551984 5_1:+35285478 Msa0728930:CDS
AAGAAATTTGAAATGTGTAA+GGG 0.553801 5_1:+35285404 Msa0728930:CDS
AATGTTATGGACATGAGAGC+TGG 0.553894 5_1:+35290269 Msa0728930:CDS
AGACCAGAATCTTGACAGCT+GGG 0.557207 5_1:+35290415 Msa0728930:CDS
AATGAGTCGGCGGAGGTGGA+TGG 0.559759 5_1:-35285044 None:intergenic
CTCAGCCGTGTCTCGCAATG+TGG 0.560028 5_1:-35291257 None:intergenic
GTTGCTCTGGATGTTGGCTG+TGG 0.560479 5_1:+35287355 Msa0728930:CDS
TGAGAGGCATTGTCCAGTTG+AGG 0.561494 5_1:+35285508 Msa0728930:CDS
CACATTGCGAGACACGGCTG+AGG 0.562629 5_1:+35291258 Msa0728930:CDS
TGAGCGTGGTGTCCCAGCGA+TGG 0.563033 5_1:+35287474 Msa0728930:CDS
ACATGGAGCAGATCAATACT+TGG 0.563213 5_1:+35287198 Msa0728930:CDS
AAGCTGGAATCGGTGGAGAG+AGG 0.563583 5_1:+35285476 Msa0728930:CDS
TCCTCAGTTGGGTCACAGAG+TGG 0.565777 5_1:-35289068 None:intergenic
GAGGTTTAGTTTCTGCCTCA+CGG 0.569050 5_1:-35289046 None:intergenic
CACTATACCAGATATTGTCT+GGG 0.572661 5_1:-35289091 None:intergenic
ATGAACATCCTTTGGAGCAA+CGG 0.573255 5_1:-35287428 None:intergenic
CGGATGTATACATGTCCACC+AGG 0.573803 5_1:-35291175 None:intergenic
CAAATGCTGCCACCATCGCT+GGG 0.574502 5_1:-35287486 None:intergenic
GCAAGCCACATTGCGAGACA+CGG 0.574862 5_1:+35291252 Msa0728930:CDS
TCAGTTGGGTCACAGAGTGG+AGG 0.576617 5_1:-35289065 None:intergenic
TTGATCGGTTGTTGTTGTGG+TGG 0.576695 5_1:-35285162 None:intergenic
GATCAGGAAGCTGGAATCGG+TGG 0.578234 5_1:+35285469 Msa0728930:CDS
ATATATGACCGTGGGCTGAT+CGG 0.578664 5_1:+35290482 Msa0728930:CDS
TCTTCTACCTCGGTAAACAC+TGG 0.580466 5_1:+35285105 Msa0728930:CDS
AGCCCACGGTCATATATCAC+AGG 0.582608 5_1:-35290476 None:intergenic
ATCCAATTTGCTCTTGAGCG+TGG 0.584623 5_1:+35287460 Msa0728930:CDS
CGAATCAAAATATTGGAATG+AGG 0.585929 5_1:+35290196 Msa0728930:CDS
TATCTTCCACAAGACGAGTG+TGG 0.590690 5_1:-35287105 None:intergenic
AATTCCCCATTGCAGCTGCA+GGG 0.592287 5_1:-35291384 None:intergenic
CCATGATAGAAAGAGAATCT+CGG 0.594394 5_1:-35291195 None:intergenic
GCTAATAGGATGCTAAGGGC+AGG 0.597013 5_1:+35288374 Msa0728930:CDS
AGATAGCAGCTATTGTCGAA+GGG 0.600387 5_1:-35289020 None:intergenic
AGAGAGGGGAGAGATTTGAG+AGG 0.601163 5_1:+35285492 Msa0728930:CDS
TCGTCTTGTGGAAGATAAAG+GGG 0.601257 5_1:+35287111 Msa0728930:CDS
AATAGGATGCTAAGGGCAGG+AGG 0.602368 5_1:+35288377 Msa0728930:CDS
ATACTTGGACCATATTTCCA+AGG 0.607174 5_1:+35287213 Msa0728930:CDS
AGGATTAATTGGACTCGAGA+TGG 0.610051 5_1:+35287568 Msa0728930:CDS
GGTGGCACCCAATTTATACA+TGG 0.618391 5_1:+35287181 Msa0728930:CDS
GCGTGGTGTCCCAGCGATGG+TGG 0.619449 5_1:+35287477 Msa0728930:CDS
TGAAGCTAATAGGATGCTAA+GGG 0.624119 5_1:+35288370 Msa0728930:CDS
CTATACCTAATCAGCTCTTG+CGG 0.624952 5_1:-35291509 None:intergenic
TGCCTGTGATATATGACCGT+GGG 0.626136 5_1:+35290474 Msa0728930:CDS
TTAGGGATTCTGAATGAGGA+CGG 0.628902 5_1:+35285275 Msa0728930:CDS
AGATTGCCAAGGCTATCGGC+TGG 0.629883 5_1:+35291230 Msa0728930:CDS
GTAGAAGAAAGTGACGGCGA+CGG 0.631848 5_1:-35285090 None:intergenic
ACATTGCGAGACACGGCTGA+GGG 0.636605 5_1:+35291259 Msa0728930:CDS
GCATAACTCCGATCAGCCCA+CGG 0.643651 5_1:-35290490 None:intergenic
TCCACTCTGTGACCCAACTG+AGG 0.650473 5_1:+35289067 Msa0728930:CDS
CGAGCTTGTGGAGATTGCCA+AGG 0.652296 5_1:+35291219 Msa0728930:CDS
TTGCCTGTGATATATGACCG+TGG 0.653035 5_1:+35290473 Msa0728930:CDS
CTTATATGTATGGACTCTGG+AGG 0.667077 5_1:+35291456 Msa0728930:three_prime_UTR
AATTTAGAAGAACAATGGGA+AGG 0.667240 5_1:+35288443 Msa0728930:CDS
AAGATCCTATAACTTGCATG+TGG 0.669433 5_1:-35291283 None:intergenic
TCTTCCACAAGACGAGTGTG+GGG 0.670598 5_1:-35287103 None:intergenic
ACGGTCATATATCACAGGCA+AGG 0.670975 5_1:-35290471 None:intergenic
GAAGAATTTGTTGAAATTGG+GGG 0.671241 5_1:-35285195 None:intergenic
ATAGGATGCTAAGGGCAGGA+GGG 0.671825 5_1:+35288378 Msa0728930:CDS
ATGGATCGGATACTTAGACC+TGG 0.683061 5_1:+35291157 Msa0728930:CDS
TCATTAACATTATCCAAACA+CGG 0.691870 5_1:-35285446 None:intergenic
AAATTGGATTACAAGAGACA+AGG 0.693865 5_1:+35287138 Msa0728930:CDS
ACCTGATTGCATCAACCGCG+TGG 0.695285 5_1:-35291325 None:intergenic
CGTCTTGTGGAAGATAAAGG+GGG 0.698310 5_1:+35287112 Msa0728930:CDS
GATCGGATACTTAGACCTGG+TGG 0.715952 5_1:+35291160 Msa0728930:CDS
GATTGGACCAGTGTTTACCG+AGG 0.722104 5_1:-35285112 None:intergenic
GATAAGTTCAAGTTTCCAGG+AGG 0.725442 5_1:+35287160 Msa0728930:CDS
ACCGAGGTAGAAGAAAGTGA+CGG 0.727876 5_1:-35285096 None:intergenic
TAGCTGCTATCTAAACCGTG+AGG 0.772667 5_1:+35289031 Msa0728930:CDS
TGATCCCTGCAGCTGCAATG+GGG 0.780340 5_1:+35291380 Msa0728930:three_prime_UTR
TGTGATAAGCTCATACCACG+CGG 0.789947 5_1:+35291310 Msa0728930:CDS
GGCGACGGTGAAGAACACAG+CGG 0.900038 5_1:-35285075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATAAAAAAAAAAA+GGG - chr5_1:35287993-35288012 None:intergenic 0.0%
!!! ATTTTATTATAAAAAAAAAA+AGG - chr5_1:35287994-35288013 None:intergenic 0.0%
!!! AAGTTTTAATATTCATTTAT+CGG + chr5_1:35286837-35286856 Msa0728930:intron 10.0%
!!! TTTTTTATAATAAAATCCTT+TGG + chr5_1:35287998-35288017 Msa0728930:intron 10.0%
!! AAATTTATATGAAATATAGA+AGG - chr5_1:35289592-35289611 None:intergenic 10.0%
!!! AGTTTTACTTATAATAAACT+TGG - chr5_1:35286433-35286452 None:intergenic 15.0%
!! TTATTATAAGTAAAACTTGT+TGG + chr5_1:35286436-35286455 Msa0728930:intron 15.0%
!! ATAATAATAAAATCCTTTGA+GGG + chr5_1:35287795-35287814 Msa0728930:intron 15.0%
!! ATTTAGTAATTTATTAGTGT+TGG + chr5_1:35288856-35288875 Msa0728930:intron 15.0%
!! ATTACTAAAAATGATAAACT+TGG - chr5_1:35289920-35289939 None:intergenic 15.0%
!!! ATTATTTTCATTGTCAATTT+AGG + chr5_1:35290021-35290040 Msa0728930:intron 15.0%
!! CTATATATGATTTCTAATTT+AGG + chr5_1:35290610-35290629 Msa0728930:intron 15.0%
!! AGAATATAAAAACTTAGATT+TGG - chr5_1:35290775-35290794 None:intergenic 15.0%
!! CAATATAATTTATTTCAAGA+TGG - chr5_1:35290960-35290979 None:intergenic 15.0%
!! CATCTTGAAATAAATTATAT+TGG + chr5_1:35290958-35290977 Msa0728930:intron 15.0%
!! TAAAAATAAGAAACTTGTAT+AGG + chr5_1:35291029-35291048 Msa0728930:intron 15.0%
!!! TTGAAGAATTTGTTGAAATT+GGG - chr5_1:35285200-35285219 None:intergenic 20.0%
!! ACTGTCAAAATTAAGAAATT+AGG + chr5_1:35285257-35285276 Msa0728930:CDS 20.0%
!! CTGTCAAAATTAAGAAATTA+GGG + chr5_1:35285258-35285277 Msa0728930:CDS 20.0%
!!! AAGAAATTTGAAATGTGTAA+GGG + chr5_1:35285404-35285423 Msa0728930:CDS 20.0%
!!! TTTATTTTGTCATAAGTTAG+CGG - chr5_1:35285874-35285893 None:intergenic 20.0%
!!! AATTATTTTGTCATATGAAG+TGG - chr5_1:35285950-35285969 None:intergenic 20.0%
!! TCATATGACAAAATAATTAG+CGG + chr5_1:35285952-35285971 Msa0728930:intron 20.0%
!! GTAGTATAATTAGAGTTTAA+TGG + chr5_1:35286193-35286212 Msa0728930:intron 20.0%
!! TGCAATATATAGTTATATCA+GGG - chr5_1:35286651-35286670 None:intergenic 20.0%
!! ATGCAATATATAGTTATATC+AGG - chr5_1:35286652-35286671 None:intergenic 20.0%
!!! TTGAATGAACCTTTTAATAA+TGG + chr5_1:35286688-35286707 Msa0728930:intron 20.0%
!!! TAATATTCATTTATCGGTTT+TGG + chr5_1:35286843-35286862 Msa0728930:intron 20.0%
!!! AGATCATTGATATATAGTTT+TGG - chr5_1:35286925-35286944 None:intergenic 20.0%
!!! ATGATCTTTAAAAGCATAAA+TGG + chr5_1:35286938-35286957 Msa0728930:intron 20.0%
!!! ATATTAAGCTTTTTTCTTGT+AGG + chr5_1:35287063-35287082 Msa0728930:intron 20.0%
!! AATTATAACATGCAATTCTA+CGG - chr5_1:35287640-35287659 None:intergenic 20.0%
!! CATAATAATAAAATCCTTTG+AGG + chr5_1:35287794-35287813 Msa0728930:intron 20.0%
!! TAATAATAAAATCCTTTGAG+GGG + chr5_1:35287796-35287815 Msa0728930:intron 20.0%
!! TCATTAGTAATGATTGATTA+GGG - chr5_1:35288119-35288138 None:intergenic 20.0%
!! ATCATTAGTAATGATTGATT+AGG - chr5_1:35288120-35288139 None:intergenic 20.0%
!! ATCATTACTAATGATTGATT+AGG + chr5_1:35288125-35288144 Msa0728930:intron 20.0%
!! TCATTACTAATGATTGATTA+GGG + chr5_1:35288126-35288145 Msa0728930:intron 20.0%
!! TATCAATAACTAAATCTAGA+TGG - chr5_1:35288487-35288506 None:intergenic 20.0%
!!! AAAATGTCCACATTTAAAAT+AGG - chr5_1:35288556-35288575 None:intergenic 20.0%
!! AACAATTAGTGAACAAATTA+TGG - chr5_1:35288594-35288613 None:intergenic 20.0%
!! ACTAACATGTAATCTTTAAA+TGG + chr5_1:35288650-35288669 Msa0728930:intron 20.0%
!! ATTGTTTGCGTAAAATTTAT+CGG - chr5_1:35289128-35289147 None:intergenic 20.0%
!!! AATATATAGTTTGAAACAAC+CGG + chr5_1:35289228-35289247 Msa0728930:intron 20.0%
!! TTCTGTTAATTATTGATCAT+GGG - chr5_1:35289408-35289427 None:intergenic 20.0%
!! TTTCTGTTAATTATTGATCA+TGG - chr5_1:35289409-35289428 None:intergenic 20.0%
!!! ATTTGTTTCTATTTTTTTCC+AGG - chr5_1:35289718-35289737 None:intergenic 20.0%
!! TAAATTGAAAACTGAATGAT+AGG + chr5_1:35289754-35289773 Msa0728930:intron 20.0%
!! TTCTAGATATAAAATTCCAT+GGG - chr5_1:35289859-35289878 None:intergenic 20.0%
!! TTTCTAGATATAAAATTCCA+TGG - chr5_1:35289860-35289879 None:intergenic 20.0%
!!! TGTGTTTTATTACATTTTAC+AGG + chr5_1:35289980-35289999 Msa0728930:intron 20.0%
!!! AGTTTTTATATTCTCTTCTT+AGG + chr5_1:35290781-35290800 Msa0728930:intron 20.0%
!!! CATTTTTCATTGCTTATTTA+CGG + chr5_1:35290988-35291007 Msa0728930:intron 20.0%
!!! TGAAGAATTTGTTGAAATTG+GGG - chr5_1:35285199-35285218 None:intergenic 25.0%
!!! GTTGAAGAATTTGTTGAAAT+TGG - chr5_1:35285201-35285220 None:intergenic 25.0%
!!! TTCTTAATTTTGACAGTTTC+TGG - chr5_1:35285254-35285273 None:intergenic 25.0%
!! GAAGAAATTTGAAATGTGTA+AGG + chr5_1:35285403-35285422 Msa0728930:CDS 25.0%
! TCATTAACATTATCCAAACA+CGG - chr5_1:35285449-35285468 None:intergenic 25.0%
! ATTTGTTTGGTAAAAAACAG+TGG + chr5_1:35285619-35285638 Msa0728930:intron 25.0%
!! GTTGATAAGTTAACTTATAG+TGG + chr5_1:35285645-35285664 Msa0728930:intron 25.0%
! AGCTTATATAGCAGTTAAAA+GGG - chr5_1:35285812-35285831 None:intergenic 25.0%
!! TTGTAACATCAGAACTTTTT+AGG + chr5_1:35286119-35286138 Msa0728930:intron 25.0%
! ATTAGATATCAGTGTAAAAC+AGG + chr5_1:35286325-35286344 Msa0728930:intron 25.0%
! TAATAAACTTGGAAAATGCT+AGG - chr5_1:35286422-35286441 None:intergenic 25.0%
!! TTTGCATAAGTAGAAGTTTT+AGG + chr5_1:35286526-35286545 Msa0728930:intron 25.0%
!! TTGCATAAGTAGAAGTTTTA+GGG + chr5_1:35286527-35286546 Msa0728930:intron 25.0%
! TATATAGTTATATCAGGGAA+AGG - chr5_1:35286646-35286665 None:intergenic 25.0%
!! AGGTTCATTCAAGTTAAAAT+AGG - chr5_1:35286680-35286699 None:intergenic 25.0%
! AAATGGAGAAAAATATGTCT+CGG + chr5_1:35286955-35286974 Msa0728930:intron 25.0%
!!! TACTTTGGTTTCTCATTTTA+AGG + chr5_1:35287244-35287263 Msa0728930:intron 25.0%
!!! CTTTTTTTCGCTAGTTTTTA+TGG + chr5_1:35287725-35287744 Msa0728930:intron 25.0%
! AAATAGAAAATAGAGACCAA+AGG - chr5_1:35288017-35288036 None:intergenic 25.0%
! TCATTACCTGATATCATTAT+TGG + chr5_1:35288157-35288176 Msa0728930:intron 25.0%
!! TTTTGCTCATGTTTATAAAC+TGG - chr5_1:35288425-35288444 None:intergenic 25.0%
! AGCAAAATTTAGAAGAACAA+TGG + chr5_1:35288438-35288457 Msa0728930:CDS 25.0%
! GCAAAATTTAGAAGAACAAT+GGG + chr5_1:35288439-35288458 Msa0728930:CDS 25.0%
! ATGAATAAATCATTGAGAGA+GGG - chr5_1:35288695-35288714 None:intergenic 25.0%
! AATGAATAAATCATTGAGAG+AGG - chr5_1:35288696-35288715 None:intergenic 25.0%
! TATAGTTAAAACTCTTGCTT+TGG - chr5_1:35288721-35288740 None:intergenic 25.0%
! TACTAAATATTCAAGTACAG+TGG - chr5_1:35288844-35288863 None:intergenic 25.0%
!!! TGGAAGTTTTTGAAAAAAGA+TGG + chr5_1:35288975-35288994 Msa0728930:CDS 25.0%
!!! GGAAGTTTTTGAAAAAAGAT+GGG + chr5_1:35288976-35288995 Msa0728930:CDS 25.0%
! TTGTTTGCGTAAAATTTATC+GGG - chr5_1:35289127-35289146 None:intergenic 25.0%
! AGAATCAAGGAGTAAAAAAT+CGG + chr5_1:35289194-35289213 Msa0728930:intron 25.0%
!! ATATATAGTTTGAAACAACC+GGG + chr5_1:35289229-35289248 Msa0728930:intron 25.0%
! CTAGCATTTAATATCAATGA+AGG - chr5_1:35289275-35289294 None:intergenic 25.0%
!!! CTATATTTTTTGTTCATCCA+AGG + chr5_1:35289299-35289318 Msa0728930:intron 25.0%
! AATTTATAGCTTCAACGAAA+TGG - chr5_1:35289341-35289360 None:intergenic 25.0%
!!! TTTTATAATTCTAGCCTTCT+AGG + chr5_1:35289636-35289655 Msa0728930:intron 25.0%
!! ATCCAGAAAAGAACTTTTTA+AGG + chr5_1:35290172-35290191 Msa0728930:CDS 25.0%
!!! CTCATTCCAATATTTTGATT+CGG - chr5_1:35290198-35290217 None:intergenic 25.0%
! GATGAGATTAAGAAATGTTA+TGG + chr5_1:35290256-35290275 Msa0728930:CDS 25.0%
! TTGTGCAAGATACTAAAATA+TGG + chr5_1:35290326-35290345 Msa0728930:intron 25.0%
!!! GATTGTTTTGTAAATATGTC+AGG + chr5_1:35290728-35290747 Msa0728930:intron 25.0%
! TACTGAGATATAGATTCTAA+AGG - chr5_1:35290932-35290951 None:intergenic 25.0%
! ACAAAGAATCTAGACTAATT+TGG - chr5_1:35291669-35291688 None:intergenic 25.0%
!! GAAGAATTTGTTGAAATTGG+GGG - chr5_1:35285198-35285217 None:intergenic 30.0%
TGGATAATGTTAATGAGATC+AGG + chr5_1:35285453-35285472 Msa0728930:CDS 30.0%
TAAACGAGCTAATTATACAG+CGG - chr5_1:35285758-35285777 None:intergenic 30.0%
GAGCTTATATAGCAGTTAAA+AGG - chr5_1:35285813-35285832 None:intergenic 30.0%
CATATGAGCTTATATGCTAT+AGG + chr5_1:35286060-35286079 Msa0728930:intron 30.0%
AAAATGACTTAGAAAGCAAG+AGG - chr5_1:35286257-35286276 None:intergenic 30.0%
TAAATTGCTCGTATAGAAGT+AGG + chr5_1:35286276-35286295 Msa0728930:intron 30.0%
AAATTGCTCGTATAGAAGTA+GGG + chr5_1:35286277-35286296 Msa0728930:intron 30.0%
! GAAATAGCAAGTGACAATTT+TGG - chr5_1:35286499-35286518 None:intergenic 30.0%
!! AAATTGTCACTTGCTATTTC+TGG + chr5_1:35286499-35286518 Msa0728930:intron 30.0%
GCATAAGCTTATCATAAAAG+AGG - chr5_1:35286586-35286605 None:intergenic 30.0%
GGTTGTTCACCATTATTAAA+AGG - chr5_1:35286700-35286719 None:intergenic 30.0%
AAAGTCGTGGAGAAAAAATA+TGG - chr5_1:35286740-35286759 None:intergenic 30.0%
!! GTATCACTGTCACTTAATTT+TGG + chr5_1:35286762-35286781 Msa0728930:intron 30.0%
TCGTCTTATAATCGATAATG+AGG + chr5_1:35286897-35286916 Msa0728930:intron 30.0%
AAATTGGATTACAAGAGACA+AGG + chr5_1:35287138-35287157 Msa0728930:CDS 30.0%
ATCTGCTCCATGTATAAATT+GGG - chr5_1:35287191-35287210 None:intergenic 30.0%
ACATAATGACCTTGGAAATA+TGG - chr5_1:35287225-35287244 None:intergenic 30.0%
!! TTTGGTTTCTCATTTTAAGG+CGG + chr5_1:35287247-35287266 Msa0728930:intron 30.0%
!! TATCATGCACATGTTTTAGA+TGG + chr5_1:35287300-35287319 Msa0728930:intron 30.0%
ATCAAATCAAAAGCTTGACT+TGG - chr5_1:35287532-35287551 None:intergenic 30.0%
AAAACTAGCGAAAAAAAGAG+TGG - chr5_1:35287723-35287742 None:intergenic 30.0%
!!! GCTAGTTTTTATGGTATGAA+TGG + chr5_1:35287734-35287753 Msa0728930:intron 30.0%
TTGTGTAAAAACAGGGTAAA+AGG + chr5_1:35287893-35287912 Msa0728930:intron 30.0%
TAAAAAAAAAAAGGGCAACC+CGG - chr5_1:35287985-35288004 None:intergenic 30.0%
AGCAATCCAATAATGATATC+AGG - chr5_1:35288166-35288185 None:intergenic 30.0%
ATCATTATTGGATTGCTAGT+AGG + chr5_1:35288169-35288188 Msa0728930:intron 30.0%
!! AAGACAAATTTGTTGTGAAC+AGG + chr5_1:35288193-35288212 Msa0728930:intron 30.0%
!! AGACAAATTTGTTGTGAACA+GGG + chr5_1:35288194-35288213 Msa0728930:intron 30.0%
CTCATGTTTATAAACTGGTT+GGG - chr5_1:35288420-35288439 None:intergenic 30.0%
AATTTAGAAGAACAATGGGA+AGG + chr5_1:35288443-35288462 Msa0728930:CDS 30.0%
!! TTGCACACCTATTTTAAATG+TGG + chr5_1:35288546-35288565 Msa0728930:intron 30.0%
TGAATAAATCATTGAGAGAG+GGG - chr5_1:35288694-35288713 None:intergenic 30.0%
TGAGCAGATATTTGATATCA+TGG - chr5_1:35288746-35288765 None:intergenic 30.0%
TAACAGTCAATTGCGAAAAT+TGG - chr5_1:35288775-35288794 None:intergenic 30.0%
ATGAGCTGTTGATCATATAA+AGG - chr5_1:35289432-35289451 None:intergenic 30.0%
CTTCTGTTAATTGTTGATCT+TGG - chr5_1:35289569-35289588 None:intergenic 30.0%
TGATGTGTACACTAAAATTG+CGG + chr5_1:35289664-35289683 Msa0728930:intron 30.0%
!!! GTTTCTATTTTTTTCCAGGA+AGG - chr5_1:35289714-35289733 None:intergenic 30.0%
TGGTTACACACATTTGTATA+GGG + chr5_1:35289812-35289831 Msa0728930:intron 30.0%
CTAAAAATGATAAACTTGGC+TGG - chr5_1:35289916-35289935 None:intergenic 30.0%
ATAATTGAACACCCAATCAA+AGG - chr5_1:35290006-35290025 None:intergenic 30.0%
TTAAGGCCGAATCAAAATAT+TGG + chr5_1:35290189-35290208 Msa0728930:CDS 30.0%
CGAATCAAAATATTGGAATG+AGG + chr5_1:35290196-35290215 Msa0728930:CDS 30.0%
GCAAGATACTAAAATATGGT+AGG + chr5_1:35290330-35290349 Msa0728930:intron 30.0%
GCAGAAAGCTAAAAACATTA+TGG - chr5_1:35290375-35290394 None:intergenic 30.0%
TACTGAGAAGTTCACAATAT+TGG - chr5_1:35290577-35290596 None:intergenic 30.0%
CAAAACAATCTATCAACACA+AGG - chr5_1:35290718-35290737 None:intergenic 30.0%
ATTTGGTCAATCCACATATA+AGG - chr5_1:35290758-35290777 None:intergenic 30.0%
TTCTCTCAAGCAAAATGAAA+TGG + chr5_1:35290829-35290848 Msa0728930:intron 30.0%
TCAAGCAAAATGAAATGGTT+TGG + chr5_1:35290834-35290853 Msa0728930:intron 30.0%
AGTATATCAGTGTAACAGAT+TGG - chr5_1:35290864-35290883 None:intergenic 30.0%
! ACTGCATTTTATGTGTATGT+TGG + chr5_1:35291055-35291074 Msa0728930:intron 30.0%
! CTGCATTTTATGTGTATGTT+GGG + chr5_1:35291056-35291075 Msa0728930:intron 30.0%
GGTTATAAAACTCATGTTCT+TGG + chr5_1:35291345-35291364 Msa0728930:three_prime_UTR 30.0%
TCAATACTTGAGACAAGTTT+AGG + chr5_1:35291406-35291425 Msa0728930:three_prime_UTR 30.0%
ATCTCACTTCCTTATATGTA+TGG + chr5_1:35291446-35291465 Msa0728930:three_prime_UTR 30.0%
GTAGTGTTTCTTTATCATAC+AGG - chr5_1:35291598-35291617 None:intergenic 30.0%
TTTGTTGAAATTGGGGGAAA+TGG - chr5_1:35285192-35285211 None:intergenic 35.0%
! TGTTTGGTTAGGGTTGATTA+TGG - chr5_1:35285231-35285250 None:intergenic 35.0%
!!! TTTTGACAGTTTCTGGTGTT+TGG - chr5_1:35285247-35285266 None:intergenic 35.0%
GAAATTAGGGATTCTGAATG+AGG + chr5_1:35285271-35285290 Msa0728930:CDS 35.0%
AACAATGTCTGATGAATTCG+AGG + chr5_1:35285298-35285317 Msa0728930:CDS 35.0%
! TGAAGCACAAGTTGAAGATA+AGG + chr5_1:35285349-35285368 Msa0728930:CDS 35.0%
GGAGAAACGATTGAATTGTT+TGG + chr5_1:35285529-35285548 Msa0728930:CDS 35.0%
! ACGATTGAATTGTTTGGTTC+CGG + chr5_1:35285535-35285554 Msa0728930:intron 35.0%
! AGGTACATTTCGGATTTGTT+TGG + chr5_1:35285606-35285625 Msa0728930:intron 35.0%
GCTATATAAGCTCGTTTAAC+TGG + chr5_1:35285820-35285839 Msa0728930:intron 35.0%
!! CTTATGTAGCGGTTTTATAG+TGG - chr5_1:35285918-35285937 None:intergenic 35.0%
TGAGAAAATGACTTACCGAA+CGG + chr5_1:35286025-35286044 Msa0728930:intron 35.0%
TATAGGCTCAAATTGTGTCT+TGG + chr5_1:35286077-35286096 Msa0728930:intron 35.0%
! ATAAAAGAGGAGAGCTTGTT+AGG - chr5_1:35286573-35286592 None:intergenic 35.0%
ATAGTTATATCAGGGAAAGG+AGG - chr5_1:35286643-35286662 None:intergenic 35.0%
TAATTTAAGCTTCTCCAGGT+GGG + chr5_1:35286987-35287006 Msa0728930:intron 35.0%
!!! AAGCTTTTTTCTTGTAGGTG+TGG + chr5_1:35287068-35287087 Msa0728930:intron 35.0%
AAGATAAAGGGGGTCAAAAT+TGG + chr5_1:35287122-35287141 Msa0728930:CDS 35.0%
! AAGGATAAGTTCAAGTTTCC+AGG + chr5_1:35287157-35287176 Msa0728930:CDS 35.0%
GATCTGCTCCATGTATAAAT+TGG - chr5_1:35287192-35287211 None:intergenic 35.0%
ATACTTGGACCATATTTCCA+AGG + chr5_1:35287213-35287232 Msa0728930:CDS 35.0%
TCCAAGGTCATTATGTACTT+TGG + chr5_1:35287229-35287248 Msa0728930:intron 35.0%
ACCAAAGTACATAATGACCT+TGG - chr5_1:35287233-35287252 None:intergenic 35.0%
ATGGTTCTTGACATCACATT+TGG + chr5_1:35287319-35287338 Msa0728930:CDS 35.0%
TCAGAATATAAGAGTTGCTC+TGG + chr5_1:35287342-35287361 Msa0728930:CDS 35.0%
TGATTCTCATGAACATCCTT+TGG - chr5_1:35287439-35287458 None:intergenic 35.0%
ATGGTATGAGTTCTCTTGTA+TGG + chr5_1:35287587-35287606 Msa0728930:intron 35.0%
ATTTACATAAAACCGCGACT+AGG - chr5_1:35287674-35287693 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr5_1:35287892-35287911 None:intergenic 35.0%
GAATTGGGATGAAAAAAGAG+AGG - chr5_1:35288043-35288062 None:intergenic 35.0%
TCCAAGAAGAAGAATCTCAA+GGG - chr5_1:35288069-35288088 None:intergenic 35.0%
TTCCAAGAAGAAGAATCTCA+AGG - chr5_1:35288070-35288089 None:intergenic 35.0%
AACTGAAACAAAGACGTGAA+GGG - chr5_1:35288287-35288306 None:intergenic 35.0%
TAACTGAAACAAAGACGTGA+AGG - chr5_1:35288288-35288307 None:intergenic 35.0%
!! TTTTGCTGCTTGAAGCTAAT+AGG + chr5_1:35288360-35288379 Msa0728930:CDS 35.0%
TTGAAGCTAATAGGATGCTA+AGG + chr5_1:35288369-35288388 Msa0728930:CDS 35.0%
TGAAGCTAATAGGATGCTAA+GGG + chr5_1:35288370-35288389 Msa0728930:CDS 35.0%
GCTCATGTTTATAAACTGGT+TGG - chr5_1:35288421-35288440 None:intergenic 35.0%
! GATACTTTTCAGCTATAGAC+TGG + chr5_1:35288503-35288522 Msa0728930:intron 35.0%
! TGTACAACTGTGCTATTGAA+AGG + chr5_1:35288806-35288825 Msa0728930:intron 35.0%
! GTACAACTGTGCTATTGAAA+GGG + chr5_1:35288807-35288826 Msa0728930:intron 35.0%
TCCATTGTGAGTGTAACATT+GGG + chr5_1:35288908-35288927 Msa0728930:intron 35.0%
AAGATGGGTATGTTGCAATA+TGG + chr5_1:35288991-35289010 Msa0728930:CDS 35.0%
CACTATACCAGATATTGTCT+GGG - chr5_1:35289094-35289113 None:intergenic 35.0%
ACACTATACCAGATATTGTC+TGG - chr5_1:35289095-35289114 None:intergenic 35.0%
TTGCGTAAAATTTATCGGGA+AGG - chr5_1:35289123-35289142 None:intergenic 35.0%
TCTATCACACAAGACAATGA+TGG - chr5_1:35289162-35289181 None:intergenic 35.0%
ATCATTGTCTTGTGTGATAG+AGG + chr5_1:35289161-35289180 Msa0728930:intron 35.0%
AGGTTTCGAGAATAGAATCA+AGG + chr5_1:35289181-35289200 Msa0728930:intron 35.0%
CTATTTAATTCTACACGTCC+CGG - chr5_1:35289250-35289269 None:intergenic 35.0%
TATGATCAACAGCTCATCAA+AGG + chr5_1:35289435-35289454 Msa0728930:intron 35.0%
CAAAGTTATCTGGATGGAAA+TGG - chr5_1:35289475-35289494 None:intergenic 35.0%
TACACATCAGTAAACCTAGA+AGG - chr5_1:35289653-35289672 None:intergenic 35.0%
! TTTTCTTCATCTAACCTTCC+TGG + chr5_1:35289697-35289716 Msa0728930:intron 35.0%
AAGTAGAATGTGATCTAACC+TGG + chr5_1:35289792-35289811 Msa0728930:intron 35.0%
CTATACAAATGTGTGTAACC+AGG - chr5_1:35289813-35289832 None:intergenic 35.0%
CTGGTTACACACATTTGTAT+AGG + chr5_1:35289811-35289830 Msa0728930:intron 35.0%
! ACATTTTACAGGCCTTTGAT+TGG + chr5_1:35289991-35290010 Msa0728930:intron 35.0%
! CATTTTACAGGCCTTTGATT+GGG + chr5_1:35289992-35290011 Msa0728930:intron 35.0%
ATGGAGCAAATCTTACCAAA+TGG + chr5_1:35290090-35290109 Msa0728930:CDS 35.0%
!! TTTATGCTTTGAAGCCTATC+AGG - chr5_1:35290137-35290156 None:intergenic 35.0%
! GGCCTTAAAAAGTTCTTTTC+TGG - chr5_1:35290177-35290196 None:intergenic 35.0%
TTAATCTCATCGTCTTCCAA+TGG - chr5_1:35290247-35290266 None:intergenic 35.0%
ATGAATGTTGTTCCTGTTAG+TGG + chr5_1:35290440-35290459 Msa0728930:CDS 35.0%
GTTCTTGGATAAGTGTCAAA+TGG - chr5_1:35290642-35290661 None:intergenic 35.0%
! TTTTCTTCTCAACAGAAAGC+AGG - chr5_1:35290689-35290708 None:intergenic 35.0%
TGCTTTCTGTTGAGAAGAAA+AGG + chr5_1:35290688-35290707 Msa0728930:CDS 35.0%
GAGAAATGCAACACATAGTT+AGG - chr5_1:35291100-35291119 None:intergenic 35.0%
CCATGATAGAAAGAGAATCT+CGG - chr5_1:35291198-35291217 None:intergenic 35.0%
! AAGATCCTATAACTTGCATG+TGG - chr5_1:35291286-35291305 None:intergenic 35.0%
ACATGCAAGTTATAGGATCT+TGG + chr5_1:35291285-35291304 Msa0728930:CDS 35.0%
TTCCTTATATGTATGGACTC+TGG + chr5_1:35291453-35291472 Msa0728930:three_prime_UTR 35.0%
TTATCATACAGGCAAGATAC+TGG - chr5_1:35291587-35291606 None:intergenic 35.0%
CACAAGCAAAAAACAACGAA+GGG + chr5_1:35291627-35291646 Msa0728930:three_prime_UTR 35.0%
ACGAAGGGAGTCTAAAAATT+TGG + chr5_1:35291642-35291661 Msa0728930:three_prime_UTR 35.0%
!! AGCGGTTTTGATGAATGAGT+CGG - chr5_1:35285060-35285079 None:intergenic 40.0%
! GATTTGATCGGTTGTTGTTG+TGG - chr5_1:35285168-35285187 None:intergenic 40.0%
! TTGGTTAGGGTTGATTATGG+CGG - chr5_1:35285228-35285247 None:intergenic 40.0%
!! CAGTTTCTGGTGTTTGGTTA+GGG - chr5_1:35285241-35285260 None:intergenic 40.0%
!! ACAGTTTCTGGTGTTTGGTT+AGG - chr5_1:35285242-35285261 None:intergenic 40.0%
TTAGGGATTCTGAATGAGGA+CGG + chr5_1:35285275-35285294 Msa0728930:CDS 40.0%
ATGTCTGATGAATTCGAGGT+TGG + chr5_1:35285302-35285321 Msa0728930:CDS 40.0%
TGTCTGATGAATTCGAGGTT+GGG + chr5_1:35285303-35285322 Msa0728930:CDS 40.0%
GGAATTTGATCCGGATTATG+TGG + chr5_1:35285325-35285344 Msa0728930:CDS 40.0%
TGTGCTTCATCCACATAATC+CGG - chr5_1:35285338-35285357 None:intergenic 40.0%
GAGTGAGTATATACCGTGTT+TGG + chr5_1:35285433-35285452 Msa0728930:CDS 40.0%
TGTTAATGAGATCAGGAAGC+TGG + chr5_1:35285460-35285479 Msa0728930:CDS 40.0%
TTCAATCGTTTCTCCTCAAC+TGG - chr5_1:35285524-35285543 None:intergenic 40.0%
ATTAGCTCGTTTAACTGCAC+CGG + chr5_1:35285765-35285784 Msa0728930:intron 40.0%
GAGAAAATGACTTACCGAAC+GGG + chr5_1:35286026-35286045 Msa0728930:intron 40.0%
ATGACTAAGAAAGACCCGTT+CGG - chr5_1:35286043-35286062 None:intergenic 40.0%
ATGGACAGAAGACTCATTCA+TGG - chr5_1:35286721-35286740 None:intergenic 40.0%
TGGAGAAAAATATGTCTCGG+TGG + chr5_1:35286958-35286977 Msa0728930:intron 40.0%
AGAAAAATATGTCTCGGTGG+AGG + chr5_1:35286961-35286980 Msa0728930:intron 40.0%
GAAAAATATGTCTCGGTGGA+GGG + chr5_1:35286962-35286981 Msa0728930:intron 40.0%
GGTGTAATTTAAGCTTCTCC+AGG + chr5_1:35286983-35287002 Msa0728930:intron 40.0%
GTAATTTAAGCTTCTCCAGG+TGG + chr5_1:35286986-35287005 Msa0728930:intron 40.0%
AATTTAAGCTTCTCCAGGTG+GGG + chr5_1:35286988-35287007 Msa0728930:intron 40.0%
AAATTATAATCCACCCCACC+TGG - chr5_1:35287004-35287023 None:intergenic 40.0%
ACTCGTCTTGTGGAAGATAA+AGG + chr5_1:35287109-35287128 Msa0728930:CDS 40.0%
CTCGTCTTGTGGAAGATAAA+GGG + chr5_1:35287110-35287129 Msa0728930:CDS 40.0%
TCGTCTTGTGGAAGATAAAG+GGG + chr5_1:35287111-35287130 Msa0728930:CDS 40.0%
! GATAAGTTCAAGTTTCCAGG+AGG + chr5_1:35287160-35287179 Msa0728930:CDS 40.0%
ACATGGAGCAGATCAATACT+TGG + chr5_1:35287198-35287217 Msa0728930:CDS 40.0%
! ATAAGAGTTGCTCTGGATGT+TGG + chr5_1:35287349-35287368 Msa0728930:CDS 40.0%
!! ATGAACATCCTTTGGAGCAA+CGG - chr5_1:35287431-35287450 None:intergenic 40.0%
AGGATTAATTGGACTCGAGA+TGG + chr5_1:35287568-35287587 Msa0728930:CDS 40.0%
! TCTACGGTTAGTTAGCTGTT+AGG - chr5_1:35287624-35287643 None:intergenic 40.0%
! TGCAAGTTTTTACCTAGTCG+CGG + chr5_1:35287659-35287678 Msa0728930:intron 40.0%
GCATATGCACTTGTTTACTC+TGG + chr5_1:35287756-35287775 Msa0728930:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr5_1:35287841-35287860 Msa0728930:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr5_1:35287885-35287904 Msa0728930:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr5_1:35287886-35287905 Msa0728930:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr5_1:35287919-35287938 Msa0728930:intron 40.0%
GAATCTCAAGGGGATGAATT+GGG - chr5_1:35288058-35288077 None:intergenic 40.0%
AGAATCTCAAGGGGATGAAT+TGG - chr5_1:35288059-35288078 None:intergenic 40.0%
CCAAGAAGAAGAATCTCAAG+GGG - chr5_1:35288068-35288087 None:intergenic 40.0%
GTTTGAACTTGTGATGCAGA+TGG + chr5_1:35288335-35288354 Msa0728930:intron 40.0%
! TGGGAAGGTATGACTCAAAT+TGG + chr5_1:35288458-35288477 Msa0728930:intron 40.0%
CAGCTATAGACTGGCATTTA+TGG + chr5_1:35288512-35288531 Msa0728930:intron 40.0%
! TCGCAATTGACTGTTACTTC+TGG + chr5_1:35288779-35288798 Msa0728930:intron 40.0%
CAATGTTACACTCACAATGG+AGG - chr5_1:35288909-35288928 None:intergenic 40.0%
CTCCATTGTGAGTGTAACAT+TGG + chr5_1:35288907-35288926 Msa0728930:intron 40.0%
ACCCAATGTTACACTCACAA+TGG - chr5_1:35288912-35288931 None:intergenic 40.0%
ATCTTACTACTCGTCTTTGC+TGG + chr5_1:35288955-35288974 Msa0728930:CDS 40.0%
! GAGTTTCACTCTCTTTTCCT+TGG - chr5_1:35289319-35289338 None:intergenic 40.0%
CTTCAGCAAAGTTATCTGGA+TGG - chr5_1:35289481-35289500 None:intergenic 40.0%
CATCCAGATAACTTTGCTGA+AGG + chr5_1:35289479-35289498 Msa0728930:intron 40.0%
CAACCTTCAGCAAAGTTATC+TGG - chr5_1:35289485-35289504 None:intergenic 40.0%
! TTTTCCTGTGGCTGCATATA+GGG - chr5_1:35289892-35289911 None:intergenic 40.0%
! TTTTTCCTGTGGCTGCATAT+AGG - chr5_1:35289893-35289912 None:intergenic 40.0%
ATCTCTCAATTGCCTGAGAA+TGG + chr5_1:35290065-35290084 Msa0728930:CDS 40.0%
CAATTGCCTGAGAATGGATA+TGG + chr5_1:35290071-35290090 Msa0728930:CDS 40.0%
TTTGCTCCATATCCATTCTC+AGG - chr5_1:35290080-35290099 None:intergenic 40.0%
GTTTGCAAACTTCACCTGAT+AGG + chr5_1:35290120-35290139 Msa0728930:CDS 40.0%
GTTATGTACGTGCTTACCAT+TGG + chr5_1:35290228-35290247 Msa0728930:CDS 40.0%
AATGTTATGGACATGAGAGC+TGG + chr5_1:35290269-35290288 Msa0728930:CDS 40.0%
TGATCGGAGTTATGCATGAT+TGG + chr5_1:35290498-35290517 Msa0728930:CDS 40.0%
TGCAGAAGATCATAGGTTCT+TGG - chr5_1:35290657-35290676 None:intergenic 40.0%
TGAAGCATGCAGAAGATCAT+AGG - chr5_1:35290664-35290683 None:intergenic 40.0%
CTCATCAATCATGCTTGAGA+TGG + chr5_1:35291138-35291157 Msa0728930:CDS 40.0%
CAATCATGCTTGAGATGGAT+CGG + chr5_1:35291143-35291162 Msa0728930:CDS 40.0%
CCGAGATTCTCTTTCTATCA+TGG + chr5_1:35291195-35291214 Msa0728930:CDS 40.0%
CTCCAGAGTCCATACATATA+AGG - chr5_1:35291458-35291477 None:intergenic 40.0%
CTTATATGTATGGACTCTGG+AGG + chr5_1:35291456-35291475 Msa0728930:three_prime_UTR 40.0%
CTATACCTAATCAGCTCTTG+CGG - chr5_1:35291512-35291531 None:intergenic 40.0%
!!! CCTTCGTTGTTTTTTGCTTG+TGG - chr5_1:35291629-35291648 None:intergenic 40.0%
CCACAAGCAAAAAACAACGA+AGG + chr5_1:35291626-35291645 Msa0728930:three_prime_UTR 40.0%
!! GGTTTTGATGAATGAGTCGG+CGG - chr5_1:35285057-35285076 None:intergenic 45.0%
ACCGAGGTAGAAGAAAGTGA+CGG - chr5_1:35285099-35285118 None:intergenic 45.0%
TCTTCTACCTCGGTAAACAC+TGG + chr5_1:35285105-35285124 Msa0728930:CDS 45.0%
! GAGTTGCTGTTGAGAGAGAT+TGG - chr5_1:35285132-35285151 None:intergenic 45.0%
! TTGATCGGTTGTTGTTGTGG+TGG - chr5_1:35285165-35285184 None:intergenic 45.0%
GGGGGAAATGGAGATTTGAT+CGG - chr5_1:35285180-35285199 None:intergenic 45.0%
GTCTGATGAATTCGAGGTTG+GGG + chr5_1:35285304-35285323 Msa0728930:CDS 45.0%
TGAGATCAGGAAGCTGGAAT+CGG + chr5_1:35285466-35285485 Msa0728930:CDS 45.0%
ATCCGAAATGTACCTCGTCA+CGG - chr5_1:35285601-35285620 None:intergenic 45.0%
TTAGCTCGTTTAACTGCACC+GGG + chr5_1:35285766-35285785 Msa0728930:intron 45.0%
TAGCAGTTAAAAGGGCAACC+TGG - chr5_1:35285804-35285823 None:intergenic 45.0%
GGTTGAACGAGCTTATGTAG+CGG - chr5_1:35285929-35285948 None:intergenic 45.0%
GAAAGCAAGAGGACTCTCAT+TGG - chr5_1:35286246-35286265 None:intergenic 45.0%
!! GTAAAACTTGTTGGTCCCAG+TGG + chr5_1:35286445-35286464 Msa0728930:intron 45.0%
GACAGTGATACTGAAAGTCG+TGG - chr5_1:35286753-35286772 None:intergenic 45.0%
ATCTTCCACAAGACGAGTGT+GGG - chr5_1:35287107-35287126 None:intergenic 45.0%
TATCTTCCACAAGACGAGTG+TGG - chr5_1:35287108-35287127 None:intergenic 45.0%
CGTCTTGTGGAAGATAAAGG+GGG + chr5_1:35287112-35287131 Msa0728930:CDS 45.0%
! AAGTTCAAGTTTCCAGGAGG+TGG + chr5_1:35287163-35287182 Msa0728930:CDS 45.0%
GGTGGCACCCAATTTATACA+TGG + chr5_1:35287181-35287200 Msa0728930:CDS 45.0%
! ATCCAATTTGCTCTTGAGCG+TGG + chr5_1:35287460-35287479 Msa0728930:CDS 45.0%
TGATACATTGTTCACGCTGC+AGG + chr5_1:35287548-35287567 Msa0728930:CDS 45.0%
GTTCACGCTGCAGGATTAAT+TGG + chr5_1:35287557-35287576 Msa0728930:CDS 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr5_1:35287847-35287866 Msa0728930:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr5_1:35287848-35287867 Msa0728930:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr5_1:35287881-35287900 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr5_1:35287915-35287934 Msa0728930:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr5_1:35287918-35287937 Msa0728930:intron 45.0%
CCCCTTGAGATTCTTCTTCT+TGG + chr5_1:35288065-35288084 Msa0728930:intron 45.0%
TGTTGTGAACAGGGATTGCA+TGG + chr5_1:35288203-35288222 Msa0728930:intron 45.0%
CACAAGTTCAAACGAGGTGT+TGG - chr5_1:35288328-35288347 None:intergenic 45.0%
CTGCATCACAAGTTCAAACG+AGG - chr5_1:35288334-35288353 None:intergenic 45.0%
AGAGAGGGGTCTAAGTCAAA+GGG - chr5_1:35288680-35288699 None:intergenic 45.0%
ACAATGGAGGCTGCGATATT+AGG - chr5_1:35288896-35288915 None:intergenic 45.0%
! GAGGTTTAGTTTCTGCCTCA+CGG - chr5_1:35289049-35289068 None:intergenic 45.0%
TATTGTCTGGGTCCTCAGTT+GGG - chr5_1:35289082-35289101 None:intergenic 45.0%
ATATTGTCTGGGTCCTCAGT+TGG - chr5_1:35289083-35289102 None:intergenic 45.0%
TGTATAGGGTTTCTACCTGC+AGG + chr5_1:35289826-35289845 Msa0728930:intron 45.0%
!!! AACTTGGCTGGTTTTTCCTG+TGG - chr5_1:35289904-35289923 None:intergenic 45.0%
!! ATGGACATGAGAGCTGGTTT+TGG + chr5_1:35290275-35290294 Msa0728930:CDS 45.0%
TAGACCAGAATCTTGACAGC+TGG + chr5_1:35290414-35290433 Msa0728930:CDS 45.0%
AGACCAGAATCTTGACAGCT+GGG + chr5_1:35290415-35290434 Msa0728930:CDS 45.0%
TAACCCAGCTGTCAAGATTC+TGG - chr5_1:35290421-35290440 None:intergenic 45.0%
! AAGGTGTTTGAGCCACTAAC+AGG - chr5_1:35290455-35290474 None:intergenic 45.0%
ACGGTCATATATCACAGGCA+AGG - chr5_1:35290474-35290493 None:intergenic 45.0%
TTGCCTGTGATATATGACCG+TGG + chr5_1:35290473-35290492 Msa0728930:CDS 45.0%
TGCCTGTGATATATGACCGT+GGG + chr5_1:35290474-35290493 Msa0728930:CDS 45.0%
! ATATATGACCGTGGGCTGAT+CGG + chr5_1:35290482-35290501 Msa0728930:CDS 45.0%
TGTCAGGCTGTCCTTATATG+TGG + chr5_1:35290744-35290763 Msa0728930:intron 45.0%
ATGGATCGGATACTTAGACC+TGG + chr5_1:35291157-35291176 Msa0728930:CDS 45.0%
TTCTATCATGGACGAGCTTG+TGG + chr5_1:35291207-35291226 Msa0728930:CDS 45.0%
AGGGTCCACATGCAAGTTAT+AGG + chr5_1:35291278-35291297 Msa0728930:CDS 45.0%
TGTGATAAGCTCATACCACG+CGG + chr5_1:35291310-35291329 Msa0728930:CDS 45.0%
TTTGATGAATGAGTCGGCGG+AGG - chr5_1:35285054-35285073 None:intergenic 50.0%
GTAGAAGAAAGTGACGGCGA+CGG - chr5_1:35285093-35285112 None:intergenic 50.0%
! GCCGTCACTTTCTTCTACCT+CGG + chr5_1:35285095-35285114 Msa0728930:CDS 50.0%
GATTGGACCAGTGTTTACCG+AGG - chr5_1:35285115-35285134 None:intergenic 50.0%
CGAGGTTGGGGAATTTGATC+CGG + chr5_1:35285316-35285335 Msa0728930:CDS 50.0%
AGAGAGGGGAGAGATTTGAG+AGG + chr5_1:35285492-35285511 Msa0728930:CDS 50.0%
!! TGAGAGGCATTGTCCAGTTG+AGG + chr5_1:35285508-35285527 Msa0728930:CDS 50.0%
! TGTTTGGTTCCGGTGCCTAA+AGG + chr5_1:35285545-35285564 Msa0728930:intron 50.0%
TTCCGGTGCCTAAAGGTTAC+CGG + chr5_1:35285552-35285571 Msa0728930:intron 50.0%
AGCCGTGACGAGGTACATTT+CGG + chr5_1:35285596-35285615 Msa0728930:intron 50.0%
TTGTGAAGTCGACGACCACT+GGG - chr5_1:35286463-35286482 None:intergenic 50.0%
TTTGTGAAGTCGACGACCAC+TGG - chr5_1:35286464-35286483 None:intergenic 50.0%
TCTTCCACAAGACGAGTGTG+GGG - chr5_1:35287106-35287125 None:intergenic 50.0%
! ATAAATTGGGTGCCACCTCC+TGG - chr5_1:35287178-35287197 None:intergenic 50.0%
!! GGCTGTGGTGTAGCTAGTTT+TGG + chr5_1:35287370-35287389 Msa0728930:CDS 50.0%
CACAATGTCCGTTGCTCCAA+AGG + chr5_1:35287420-35287439 Msa0728930:CDS 50.0%
CACCACGCTCAAGAGCAAAT+TGG - chr5_1:35287465-35287484 None:intergenic 50.0%
! AATCCTTTGAGGGGCAACCT+TGG + chr5_1:35287805-35287824 Msa0728930:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr5_1:35287825-35287844 None:intergenic 50.0%
GCTAATAGGATGCTAAGGGC+AGG + chr5_1:35288374-35288393 Msa0728930:CDS 50.0%
AATAGGATGCTAAGGGCAGG+AGG + chr5_1:35288377-35288396 Msa0728930:CDS 50.0%
ATAGGATGCTAAGGGCAGGA+GGG + chr5_1:35288378-35288397 Msa0728930:CDS 50.0%
CCTATCAACGCGACACATGA+AGG - chr5_1:35288626-35288645 None:intergenic 50.0%
! CCTTCATGTGTCGCGTTGAT+AGG + chr5_1:35288623-35288642 Msa0728930:intron 50.0%
GAGAGAGGGGTCTAAGTCAA+AGG - chr5_1:35288681-35288700 None:intergenic 50.0%
CTGAGGACCCAGACAATATC+TGG + chr5_1:35289084-35289103 Msa0728930:CDS 50.0%
TGTGGCTGCATATAGGGTCA+AGG - chr5_1:35289886-35289905 None:intergenic 50.0%
TTGACCCTATATGCAGCCAC+AGG + chr5_1:35289885-35289904 Msa0728930:intron 50.0%
TTGCAAACGTGCAGGCCATT+TGG - chr5_1:35290108-35290127 None:intergenic 50.0%
GGTGAAGTTTGCAAACGTGC+AGG - chr5_1:35290116-35290135 None:intergenic 50.0%
!!! GACATGAGAGCTGGTTTTGG+CGG + chr5_1:35290278-35290297 Msa0728930:CDS 50.0%
!!! ACATGAGAGCTGGTTTTGGC+GGG + chr5_1:35290279-35290298 Msa0728930:CDS 50.0%
AGCCCACGGTCATATATCAC+AGG - chr5_1:35290479-35290498 None:intergenic 50.0%
GATCGGATACTTAGACCTGG+TGG + chr5_1:35291160-35291179 Msa0728930:CDS 50.0%
CGGATGTATACATGTCCACC+AGG - chr5_1:35291178-35291197 None:intergenic 50.0%
GTGGAGATTGCCAAGGCTAT+CGG + chr5_1:35291226-35291245 Msa0728930:CDS 50.0%
ATGATCCCTGCAGCTGCAAT+GGG + chr5_1:35291379-35291398 Msa0728930:three_prime_UTR 50.0%
AATTCCCCATTGCAGCTGCA+GGG - chr5_1:35291387-35291406 None:intergenic 50.0%
TCAGACCGCAAGAGCTGATT+AGG + chr5_1:35291504-35291523 Msa0728930:three_prime_UTR 50.0%
GATCAGGAAGCTGGAATCGG+TGG + chr5_1:35285469-35285488 Msa0728930:CDS 55.0%
AAGCTGGAATCGGTGGAGAG+AGG + chr5_1:35285476-35285495 Msa0728930:CDS 55.0%
AGCTGGAATCGGTGGAGAGA+GGG + chr5_1:35285477-35285496 Msa0728930:CDS 55.0%
TCCGGTGCCTAAAGGTTACC+GGG + chr5_1:35285553-35285572 Msa0728930:intron 55.0%
CGGCTTCTAGGCCAAGGAAT+CGG - chr5_1:35285581-35285600 None:intergenic 55.0%
TGTACCTCGTCACGGCTTCT+AGG - chr5_1:35285593-35285612 None:intergenic 55.0%
ACCTGGTGCACTAAAGCTCC+CGG - chr5_1:35285787-35285806 None:intergenic 55.0%
TTAAGCTTCTCCAGGTGGGG+TGG + chr5_1:35286991-35287010 Msa0728930:intron 55.0%
TGTTCCCCACACTCGTCTTG+TGG + chr5_1:35287099-35287118 Msa0728930:CDS 55.0%
! GTTGCTCTGGATGTTGGCTG+TGG + chr5_1:35287355-35287374 Msa0728930:CDS 55.0%
CAAATGCTGCCACCATCGCT+GGG - chr5_1:35287489-35287508 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr5_1:35287860-35287879 Msa0728930:intron 55.0%
!! GGCAGGAGGGTACTTTGTCT+GGG + chr5_1:35288391-35288410 Msa0728930:CDS 55.0%
TCAGTTGGGTCACAGAGTGG+AGG - chr5_1:35289068-35289087 None:intergenic 55.0%
TCCACTCTGTGACCCAACTG+AGG + chr5_1:35289067-35289086 Msa0728930:CDS 55.0%
TCCTCAGTTGGGTCACAGAG+TGG - chr5_1:35289071-35289090 None:intergenic 55.0%
GCATAACTCCGATCAGCCCA+CGG - chr5_1:35290493-35290512 None:intergenic 55.0%
CGAGCTTGTGGAGATTGCCA+AGG + chr5_1:35291219-35291238 Msa0728930:CDS 55.0%
AGATTGCCAAGGCTATCGGC+TGG + chr5_1:35291230-35291249 Msa0728930:CDS 55.0%
GCAAGCCACATTGCGAGACA+CGG + chr5_1:35291252-35291271 Msa0728930:CDS 55.0%
ACATTGCGAGACACGGCTGA+GGG + chr5_1:35291259-35291278 Msa0728930:CDS 55.0%
! ACCACGCGGTTGATGCAATC+AGG + chr5_1:35291324-35291343 Msa0728930:exon 55.0%
ACCTGATTGCATCAACCGCG+TGG - chr5_1:35291328-35291347 None:intergenic 55.0%
GATGATCCCTGCAGCTGCAA+TGG + chr5_1:35291378-35291397 Msa0728930:three_prime_UTR 55.0%
TGATCCCTGCAGCTGCAATG+GGG + chr5_1:35291380-35291399 Msa0728930:three_prime_UTR 55.0%
GAATTCCCCATTGCAGCTGC+AGG - chr5_1:35291388-35291407 None:intergenic 55.0%
AATGAGTCGGCGGAGGTGGA+TGG - chr5_1:35285047-35285066 None:intergenic 60.0%
GATGAATGAGTCGGCGGAGG+TGG - chr5_1:35285051-35285070 None:intergenic 60.0%
GGCGACGGTGAAGAACACAG+CGG - chr5_1:35285078-35285097 None:intergenic 60.0%
GCTGGAATCGGTGGAGAGAG+GGG + chr5_1:35285478-35285497 Msa0728930:CDS 60.0%
GCCCGGTAACCTTTAGGCAC+CGG - chr5_1:35285557-35285576 None:intergenic 60.0%
ATCGGCGCCCGGTAACCTTT+AGG - chr5_1:35285563-35285582 None:intergenic 60.0%
TCGTCACGGCTTCTAGGCCA+AGG - chr5_1:35285587-35285606 None:intergenic 60.0%
TTGGCCTAGAAGCCGTGACG+AGG + chr5_1:35285586-35285605 Msa0728930:intron 60.0%
! ACCGGGAGCTTTAGTGCACC+AGG + chr5_1:35285783-35285802 Msa0728930:intron 60.0%
GCAAATGCTGCCACCATCGC+TGG - chr5_1:35287490-35287509 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr5_1:35287931-35287950 Msa0728930:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr5_1:35287958-35287977 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr5_1:35287959-35287978 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr5_1:35287963-35287982 Msa0728930:intron 60.0%
!! GGGCAGGAGGGTACTTTGTC+TGG + chr5_1:35288390-35288409 Msa0728930:CDS 60.0%
CTCAGCCGTGTCTCGCAATG+TGG - chr5_1:35291260-35291279 None:intergenic 60.0%
CACATTGCGAGACACGGCTG+AGG + chr5_1:35291258-35291277 Msa0728930:CDS 60.0%
!! GTTACCGGGCGCCGATTCCT+TGG + chr5_1:35285567-35285586 Msa0728930:intron 65.0%
TAGGCCAAGGAATCGGCGCC+CGG - chr5_1:35285574-35285593 None:intergenic 65.0%
TGAGCGTGGTGTCCCAGCGA+TGG + chr5_1:35287474-35287493 Msa0728930:CDS 65.0%
GCGCCAAGGTTGCCCCTCAA+AGG - chr5_1:35287811-35287830 None:intergenic 65.0%
AGGGGCAACCTTGGCGCAAC+TGG + chr5_1:35287814-35287833 Msa0728930:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr5_1:35287933-35287952 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr5_1:35287946-35287965 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr5_1:35287947-35287966 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr5_1:35287946-35287965 Msa0728930:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr5_1:35287947-35287966 Msa0728930:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr5_1:35287964-35287983 Msa0728930:intron 65.0%
ACCTGCAGGCTGCAGTCCCA+TGG + chr5_1:35289840-35289859 Msa0728930:intron 65.0%
TCCATGGGACTGCAGCCTGC+AGG - chr5_1:35289844-35289863 None:intergenic 65.0%
GGCTTGCCAGCCGATAGCCT+TGG - chr5_1:35291239-35291258 None:intergenic 65.0%
GCGTGGTGTCCCAGCGATGG+TGG + chr5_1:35287477-35287496 Msa0728930:CDS 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr5_1:35287948-35287967 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr5_1:35287952-35287971 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr5_1:35287953-35287972 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 35285038 35291691 35285038 ID=Msa0728930;Name=Msa0728930
chr5_1 mRNA 35285038 35291691 35285038 ID=Msa0728930-mRNA-1;Parent=Msa0728930;Name=Msa0728930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.87|0.88|1|1|1|9|355|623
chr5_1 exon 35285038 35285550 35285038 ID=Msa0728930-mRNA-1:exon:10920;Parent=Msa0728930-mRNA-1
chr5_1 exon 35287085 35287234 35287085 ID=Msa0728930-mRNA-1:exon:10921;Parent=Msa0728930-mRNA-1
chr5_1 exon 35287319 35287589 35287319 ID=Msa0728930-mRNA-1:exon:10922;Parent=Msa0728930-mRNA-1
chr5_1 exon 35288354 35288464 35288354 ID=Msa0728930-mRNA-1:exon:10923;Parent=Msa0728930-mRNA-1
chr5_1 exon 35288946 35289105 35288946 ID=Msa0728930-mRNA-1:exon:10924;Parent=Msa0728930-mRNA-1
chr5_1 exon 35290043 35290300 35290043 ID=Msa0728930-mRNA-1:exon:10925;Parent=Msa0728930-mRNA-1
chr5_1 exon 35290397 35290519 35290397 ID=Msa0728930-mRNA-1:exon:10926;Parent=Msa0728930-mRNA-1
chr5_1 exon 35290632 35290709 35290632 ID=Msa0728930-mRNA-1:exon:10927;Parent=Msa0728930-mRNA-1
chr5_1 exon 35291129 35291691 35291129 ID=Msa0728930-mRNA-1:exon:10928;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35285038 35285550 35285038 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35287085 35287234 35287085 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35287319 35287589 35287319 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35288354 35288464 35288354 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35288946 35289105 35288946 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35290043 35290300 35290043 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35290397 35290519 35290397 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35290632 35290709 35290632 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 CDS 35291129 35291336 35291129 ID=Msa0728930-mRNA-1:cds;Parent=Msa0728930-mRNA-1
chr5_1 three_prime_UTR 35291337 35291691 35291337 ID=Msa0728930-mRNA-1:three_prime_utr;Parent=Msa0728930-mRNA-1
Gene Sequence

>Msa0728930

ATGAAACCATCCACCTCCGCCGACTCATTCATCAAAACCGCTGTGTTCTTCACCGTCGCCGTCACTTTCTTCTACCTCGGTAAACACTGGTCCAATCTCTCTCAACAGCAACTCATCTTCTTCACCACCACAACAACAACCGATCAAATCTCCATTTCCCCCAATTTCAACAAATTCTTCAACATCTCCGCCATAATCAACCCTAACCAAACACCAGAAACTGTCAAAATTAAGAAATTAGGGATTCTGAATGAGGACGGAACAATGTCTGATGAATTCGAGGTTGGGGAATTTGATCCGGATTATGTGGATGAAGCACAAGTTGAAGATAAGGATAATTCAAATGATGAAGTGAAATTGAAAGTGAAGAAATTTGAAATGTGTAAGGGAAATATGAGTGAGTATATACCGTGTTTGGATAATGTTAATGAGATCAGGAAGCTGGAATCGGTGGAGAGAGGGGAGAGATTTGAGAGGCATTGTCCAGTTGAGGAGAAACGATTGAATTGTTTGGTGTGGTACAGTAATGTTCCCCACACTCGTCTTGTGGAAGATAAAGGGGGTCAAAATTGGATTACAAGAGACAAGGATAAGTTCAAGTTTCCAGGAGGTGGCACCCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCCAAGATGGTTCTTGACATCACATTTGGTCAGAATATAAGAGTTGCTCTGGATGTTGGCTGTGGTGTAGCTAGTTTTGGTGCATACTTATTGTCAAGAAATGTCATCACAATGTCCGTTGCTCCAAAGGATGTTCATGAGAATCAGATCCAATTTGCTCTTGAGCGTGGTGTCCCAGCGATGGTGGCAGCATTTGCAACTAGACGTTTATTATATCCAAGTCAAGCTTTTGATTTGATACATTGTTCACGCTGCAGGATTAATTGGACTCGAGATGATGGTATTTTGCTGCTTGAAGCTAATAGGATGCTAAGGGCAGGAGGGTACTTTGTCTGGGCTGCCCAACCAGTTTATAAACATGAGCAAAATTTAGAAGAACAATGGGAAGAGATGATTAATCTTACTACTCGTCTTTGCTGGAAGTTTTTGAAAAAAGATGGGTATGTTGCAATATGGCAGAAACCCTTCGACAATAGCTGCTATCTAAACCGTGAGGCAGAAACTAAACCTCCACTCTGTGACCCAACTGAGGACCCAGACAATATCTGGTATGTTAATTTAAAAGCATGCATCTCTCAATTGCCTGAGAATGGATATGGAGCAAATCTTACCAAATGGCCTGCACGTTTGCAAACTTCACCTGATAGGCTTCAAAGCATAAAACTTGATGCTCTCTTATCCAGAAAAGAACTTTTTAAGGCCGAATCAAAATATTGGAATGAGGTAATAGCAAGTTATGTACGTGCTTACCATTGGAAGACGATGAGATTAAGAAATGTTATGGACATGAGAGCTGGTTTTGGCGGATTTGCAGCTGCATTGATAGACCAGAATCTTGACAGCTGGGTTATGAATGTTGTTCCTGTTAGTGGCTCAAACACCTTGCCTGTGATATATGACCGTGGGCTGATCGGAGTTATGCATGATTGGTGTGAACCATTTGACACTTATCCAAGAACCTATGATCTTCTGCATGCTTCATACCTGCTTTCTGTTGAGAAGAAAAGATGCAATGTCTCATCAATCATGCTTGAGATGGATCGGATACTTAGACCTGGTGGACATGTATACATCCGAGATTCTCTTTCTATCATGGACGAGCTTGTGGAGATTGCCAAGGCTATCGGCTGGCAAGCCACATTGCGAGACACGGCTGAGGGTCCACATGCAAGTTATAGGATCTTGGCTTGTGATAAGCTCATACCACGCGGTTGA
Protein sequence

>Msa0728930

MKPSTSADSFIKTAVFFTVAVTFFYLGKHWSNLSQQQLIFFTTTTTTDQISISPNFNKFFNISAIINPNQTPETVKIKKLGILNEDGTMSDEFEVGEFDPDYVDEAQVEDKDNSNDEVKLKVKKFEMCKGNMSEYIPCLDNVNEIRKLESVERGERFERHCPVEEKRLNCLVWYSNVPHTRLVEDKGGQNWITRDKDKFKFPGGGTQFIHGADQYLDHISKMVLDITFGQNIRVALDVGCGVASFGAYLLSRNVITMSVAPKDVHENQIQFALERGVPAMVAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEANRMLRAGGYFVWAAQPVYKHEQNLEEQWEEMINLTTRLCWKFLKKDGYVAIWQKPFDNSCYLNREAETKPPLCDPTEDPDNIWYVNLKACISQLPENGYGANLTKWPARLQTSPDRLQSIKLDALLSRKELFKAESKYWNEVIASYVRAYHWKTMRLRNVMDMRAGFGGFAAALIDQNLDSWVMNVVPVSGSNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHASYLLSVEKKRCNVSSIMLEMDRILRPGGHVYIRDSLSIMDELVEIAKAIGWQATLRDTAEGPHASYRILACDKLIPRG*