AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816910 MtrunA17_Chr5g0435751 90.187 642 24 2 1 623 1 622 0.0 1179
Msa0816910 MtrunA17_Chr3g0112341 74.806 643 116 6 25 623 30 670 0.0 982
Msa0816910 MtrunA17_Chr1g0159741 64.991 577 174 4 70 618 80 656 0.0 797
Msa0816910 MtrunA17_Chr1g0187601 45.143 525 244 9 106 599 78 589 2.38e-156 463
Msa0816910 MtrunA17_Chr3g0125511 47.273 495 229 8 131 596 230 721 3.13e-156 467
Msa0816910 MtrunA17_Chr3g0130381 46.881 497 229 10 134 600 268 759 3.35e-156 468
Msa0816910 MtrunA17_Chr1g0167381 45.136 514 228 10 123 597 90 588 1.56e-155 461
Msa0816910 MtrunA17_Chr1g0183721 45.087 519 237 9 123 605 60 566 1.05e-154 458
Msa0816910 MtrunA17_Chr5g0437501 43.860 513 242 10 125 601 91 593 1.33e-150 448
Msa0816910 MtrunA17_Chr3g0113981 44.531 512 249 11 113 599 153 654 2.52e-150 449
Msa0816910 MtrunA17_Chr8g0384431 42.960 554 271 11 82 603 252 792 1.03e-149 452
Msa0816910 MtrunA17_Chr8g0372471 46.351 507 235 11 124 601 376 874 9.99e-149 452
Msa0816910 MtrunA17_Chr8g0350391 42.056 535 265 12 121 618 101 627 2.56e-144 432
Msa0816910 MtrunA17_Chr8g0388881 40.185 540 263 12 122 618 95 617 1.27e-140 423
Msa0816910 MtrunA17_Chr1g0203741 42.620 542 263 15 113 614 77 610 1.70e-140 423
Msa0816910 MtrunA17_Chr7g0246701 40.951 547 261 14 117 618 93 622 5.38e-140 422
Msa0816910 MtrunA17_Chr6g0472571 40.038 527 269 11 124 614 104 619 1.57e-139 420
Msa0816910 MtrunA17_Chr8g0361791 40.801 549 275 14 98 614 63 593 3.49e-139 419
Msa0816910 MtrunA17_Chr5g0409411 40.536 560 289 12 93 618 38 587 1.23e-137 414
Msa0816910 MtrunA17_Chr8g0369481 41.176 527 266 12 125 618 70 585 2.39e-135 408
Msa0816910 MtrunA17_Chr5g0416991 41.243 531 267 13 116 614 75 592 4.02e-135 408
Msa0816910 MtrunA17_Chr4g0055031 40.637 534 266 13 121 618 82 600 1.17e-133 404
Msa0816910 MtrunA17_Chr7g0246681 40.325 553 282 12 100 620 50 586 2.98e-133 402
Msa0816910 MtrunA17_Chr7g0214551 41.779 517 258 11 118 598 36 545 1.37e-132 400
Msa0816910 MtrunA17_Chr1g0171781 43.600 500 245 8 126 596 87 578 5.30e-132 400
Msa0816910 MtrunA17_Chr3g0092501 40.183 545 280 15 101 614 61 590 2.84e-131 398
Msa0816910 MtrunA17_Chr8g0350351 39.736 531 276 11 118 618 81 597 5.95e-130 394
Msa0816910 MtrunA17_Chr1g0155141 42.670 457 231 12 155 600 246 682 8.34e-113 353
Msa0816910 MtrunA17_Chr3g0115931 33.579 542 310 13 121 618 150 685 2.06e-99 318
Msa0816910 MtrunA17_Chr5g0426281 33.024 539 303 13 123 618 144 667 1.09e-96 310
Msa0816910 MtrunA17_Chr5g0404771 48.708 271 109 5 103 348 292 557 4.18e-78 258
Msa0816910 MtrunA17_Chr5g0404761 41.045 268 142 8 350 606 1 263 1.97e-59 200
Msa0816910 MtrunA17_Chr4g0043121 30.194 361 202 11 120 450 81 421 9.60e-45 165
Msa0816910 MtrunA17_Chr4g0043131 50.345 145 69 2 476 619 39 181 1.34e-42 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816910 AT2G39750.1 64.553 694 175 6 1 623 1 694 0.0 932
Msa0816910 AT5G06050.1 63.215 647 200 4 10 618 15 661 0.0 887
Msa0816910 AT1G77260.1 61.801 644 209 6 10 620 16 655 0.0 855
Msa0816910 AT2G40280.1 42.671 614 257 18 19 600 18 568 3.82e-158 467
Msa0816910 AT3G23300.2 44.639 513 246 8 123 604 77 582 1.22e-155 461
Msa0816910 AT3G23300.1 44.639 513 246 8 123 604 77 582 1.22e-155 461
Msa0816910 AT1G29470.1 45.524 525 249 10 114 606 227 746 1.29e-154 464
Msa0816910 AT1G29470.2 45.524 525 249 10 114 606 227 746 1.29e-154 464
Msa0816910 AT4G14360.1 45.059 506 240 8 123 597 74 572 3.23e-154 457
Msa0816910 AT4G14360.2 45.059 506 240 8 123 597 74 572 3.23e-154 457
Msa0816910 AT2G34300.2 46.573 496 231 8 134 600 250 740 5.01e-153 460
Msa0816910 AT2G34300.3 46.573 496 231 8 134 600 250 740 5.01e-153 460
Msa0816910 AT2G34300.1 46.573 496 231 8 134 600 250 740 5.01e-153 460
Msa0816910 AT1G04430.1 43.551 535 257 10 99 599 59 582 4.89e-152 452
Msa0816910 AT1G04430.3 43.551 535 257 10 99 599 59 582 4.89e-152 452
Msa0816910 AT1G04430.2 43.551 535 257 10 99 599 59 582 4.89e-152 452
Msa0816910 AT3G51070.1 45.951 531 245 13 104 600 350 872 5.98e-152 461
Msa0816910 AT5G64030.1 43.345 556 276 11 79 605 259 804 6.92e-152 459
Msa0816910 AT3G56080.1 43.948 537 247 11 103 600 74 595 7.82e-152 451
Msa0816910 AT2G45750.1 41.084 572 283 13 84 613 48 607 7.53e-144 432
Msa0816910 AT4G10440.1 40.893 560 267 14 106 618 71 613 3.54e-143 430
Msa0816910 AT5G14430.2 43.893 524 240 11 115 596 64 575 8.26e-141 423
Msa0816910 AT5G14430.1 43.893 524 240 11 115 596 64 575 8.44e-141 423
Msa0816910 AT1G33170.1 40.502 558 269 13 104 614 86 627 2.61e-140 423
Msa0816910 AT1G26850.2 42.185 531 259 14 121 614 82 601 2.64e-138 417
Msa0816910 AT1G26850.1 42.185 531 259 14 121 614 82 601 2.64e-138 417
Msa0816910 AT3G56080.2 44.919 492 217 11 103 555 74 550 5.18e-138 414
Msa0816910 AT3G51070.2 46.708 486 217 13 104 555 350 827 8.15e-137 420
Msa0816910 AT4G19120.1 40.074 544 270 13 115 618 60 587 2.15e-134 406
Msa0816910 AT4G19120.2 40.074 544 270 13 115 618 60 587 2.15e-134 406
Msa0816910 AT4G00750.1 41.199 534 264 14 121 614 92 615 2.93e-134 407
Msa0816910 AT1G31850.1 39.020 551 286 12 105 618 56 593 4.30e-132 400
Msa0816910 AT1G31850.2 39.020 551 286 12 105 618 56 593 4.30e-132 400
Msa0816910 AT1G31850.4 39.020 551 286 12 105 618 56 593 4.30e-132 400
Msa0816910 AT1G31850.3 39.020 551 286 12 105 618 56 593 4.30e-132 400
Msa0816910 AT4G00740.1 39.439 535 274 12 117 618 73 590 2.53e-130 395
Msa0816910 AT4G00740.2 39.439 535 274 12 117 618 73 590 2.53e-130 395
Msa0816910 AT5G04060.1 41.188 522 263 12 128 618 86 594 2.75e-129 393
Msa0816910 AT2G43200.2 41.176 510 256 15 125 600 91 590 1.04e-125 384
Msa0816910 AT2G43200.1 41.176 510 256 15 125 600 91 590 1.04e-125 384
Msa0816910 AT4G18030.1 39.775 533 265 15 125 618 85 600 3.36e-122 375
Msa0816910 AT3G10200.1 40.918 501 255 10 128 598 75 564 1.81e-121 372
Msa0816910 AT3G10200.2 41.719 477 231 11 128 571 75 537 2.53e-116 360
Msa0816910 AT1G19430.1 40.719 501 243 14 131 600 228 705 1.28e-114 359
Msa0816910 AT1G19430.3 40.719 501 243 14 131 600 228 705 1.28e-114 359
Msa0816910 AT4G19120.3 39.121 455 222 12 115 529 60 499 2.07e-103 323
Msa0816910 AT1G26850.3 40.185 433 211 14 121 516 82 503 2.14e-97 307
Msa0816910 AT1G78240.1 32.413 543 310 14 123 618 144 676 9.16e-93 300
Msa0816910 AT1G78240.2 32.413 543 310 14 123 618 144 676 9.16e-93 300
Msa0816910 AT2G03480.1 32.616 558 312 17 104 618 65 601 4.79e-91 294
Msa0816910 AT2G03480.2 31.900 558 305 14 104 618 65 590 6.09e-91 293
Msa0816910 AT1G13860.4 32.900 538 305 16 121 618 77 598 4.77e-90 291
Msa0816910 AT1G13860.3 32.900 538 305 16 121 618 77 598 4.77e-90 291
Msa0816910 AT1G13860.1 32.900 538 305 16 121 618 77 598 4.77e-90 291
Msa0816910 AT1G13860.5 32.900 538 305 16 121 618 77 598 4.77e-90 291
Msa0816910 AT1G13860.2 35.385 455 247 14 195 618 4 442 3.33e-87 279
Msa0816910 AT1G19430.2 36.504 389 196 12 131 489 228 595 3.76e-66 228
Msa0816910 AT2G03480.3 29.412 340 201 10 104 411 65 397 6.99e-43 160

Find 179 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAGAATTTGTTGAAAT+TGG 0.181075 5_3:-51700584 None:intergenic
GGGCAGGAGGGTACTTTGTC+TGG 0.202993 5_3:+51703776 Msa0816910:CDS
ACAAAGAATCTAGACTAATT+TGG 0.238768 5_3:-51707052 None:intergenic
ACCGTGAAAATTAAGAAATT+AGG 0.240057 5_3:+51700643 Msa0816910:CDS
GTTCACGCTGCAGGATTAAT+TGG 0.245745 5_3:+51702940 Msa0816910:CDS
GATCTGCTCCATGTATAAAT+TGG 0.254182 5_3:-51702572 None:intergenic
TTAAGGCCGAATCAAAATAT+TGG 0.277578 5_3:+51705575 Msa0816910:CDS
GGTTATAAAACTCATGTTCT+TGG 0.278732 5_3:+51706731 Msa0816910:three_prime_UTR
ACGGTTTCTGGTGTCTGGTT+AGG 0.283298 5_3:-51700625 None:intergenic
CCGTGAAAATTAAGAAATTA+GGG 0.284795 5_3:+51700644 Msa0816910:CDS
ACATAATGACCTTGGAAATA+TGG 0.304152 5_3:-51702605 None:intergenic
TTGAAGAATTTGTTGAAATT+GGG 0.305965 5_3:-51700583 None:intergenic
TCAATACTTGAGACAAGTTT+AGG 0.308942 5_3:+51706792 Msa0816910:three_prime_UTR
GGCTGTGGTGTAGCTAGTTT+TGG 0.315277 5_3:+51702753 Msa0816910:CDS
TTCAATCGTTTCTCCTCAAC+TGG 0.316451 5_3:-51700907 None:intergenic
TTTATGCTTTGAAGCCTATC+AGG 0.317967 5_3:-51705520 None:intergenic
ACTCGTCTTGTGGAAGATAA+AGG 0.320120 5_3:+51702492 Msa0816910:CDS
TGTCTGGTTAGGGTTGATTA+TGG 0.325643 5_3:-51700614 None:intergenic
CTGAGGACCCAGACAATATC+TGG 0.343317 5_3:+51704470 Msa0816910:CDS
CGGTTTCTGGTGTCTGGTTA+GGG 0.349223 5_3:-51700624 None:intergenic
AAGGATAAGTTCAAGTTTCC+AGG 0.349433 5_3:+51702540 Msa0816910:CDS
CTCCAGAGTCCATACATATA+AGG 0.356571 5_3:-51706841 None:intergenic
TAACCCAGCTGTCAAGATTC+TGG 0.356752 5_3:-51705804 None:intergenic
ATGAATGTTGTTCCTGTTAG+TGG 0.356759 5_3:+51705826 Msa0816910:CDS
TGATTCTCATGAACATCCTT+TGG 0.357728 5_3:-51702819 None:intergenic
ATCTTACTACTCGTCTTTGC+TGG 0.357973 5_3:+51704341 Msa0816910:CDS
CAATTGCCTGAGAATGGATA+TGG 0.365506 5_3:+51705457 Msa0816910:CDS
TTATCATACAGGCAAGATAC+TGG 0.375320 5_3:-51706970 None:intergenic
TCAGACCGCAAGAGCTGATT+AGG 0.383699 5_3:+51706890 Msa0816910:three_prime_UTR
ATGGTTCTTGACATCACATT+TGG 0.384518 5_3:+51702702 Msa0816910:CDS
GTTTGCAAACTTCACCTGAT+AGG 0.386319 5_3:+51705506 Msa0816910:CDS
CTCGTCTTGTGGAAGATAAA+GGG 0.387548 5_3:+51702493 Msa0816910:CDS
GGCGGAGGTGGATGGTTTCA+TGG 0.387858 5_3:-51700422 None:intergenic
GGAGAAACGATTGAATTGTT+TGG 0.391998 5_3:+51700915 Msa0816910:CDS
ATGGACATGAGAGCTGGTTT+TGG 0.393652 5_3:+51705661 Msa0816910:CDS
TTGCAAACGTGCAGGCCATT+TGG 0.402548 5_3:-51705491 None:intergenic
ACATGCAAGTTATAGGATCT+TGG 0.405190 5_3:+51706671 Msa0816910:CDS
GAGTGAGTATATACCTTGTT+TGG 0.406292 5_3:+51700819 Msa0816910:CDS
CACCACGCTCAAGAGCAAAT+TGG 0.406873 5_3:-51702845 None:intergenic
GCAAATGCTGCCACCATCGC+TGG 0.409206 5_3:-51702870 None:intergenic
ATCTCACTTCCTTATATGTA+TGG 0.413943 5_3:+51706832 Msa0816910:three_prime_UTR
AGGGTCCACATGCAAGTTAT+AGG 0.415414 5_3:+51706664 Msa0816910:CDS
TGGATAATGTTAATGAGATC+AGG 0.419413 5_3:+51700839 Msa0816910:CDS
GATGAGATTAAGAAATGTTA+TGG 0.419508 5_3:+51705642 Msa0816910:CDS
AAGATGGGTATGTTGCAATA+TGG 0.422642 5_3:+51704377 Msa0816910:CDS
CCGAGATTCTCTTTCTATCA+TGG 0.426552 5_3:+51706581 Msa0816910:CDS
CTCATGTTTATAAACTGGTT+GGG 0.430395 5_3:-51703803 None:intergenic
AGCTGGAATCGGTGGAGAGA+GGG 0.430443 5_3:+51700863 Msa0816910:CDS
ACACTATACCAGATATTGTC+TGG 0.432522 5_3:-51704478 None:intergenic
GTAGTGTTTCTTTATCATAC+AGG 0.432715 5_3:-51706981 None:intergenic
ATAAATTGGGTGCCACCTCC+TGG 0.434844 5_3:-51702558 None:intergenic
CACAATGTCCGTTGCTCCAA+AGG 0.435310 5_3:+51702803 Msa0816910:CDS
TGAAGCACAAATTGATGATA+AGG 0.435958 5_3:+51700735 Msa0816910:CDS
TGATACATTGTTCACGCTGC+AGG 0.436413 5_3:+51702931 Msa0816910:CDS
TGCTTTCTGTTGAGAAGAAA+AGG 0.440670 5_3:+51706074 Msa0816910:CDS
AAGGTGTTTGAGCCACTAAC+AGG 0.441133 5_3:-51705838 None:intergenic
ACCACGCGGTTGATGCAATC+AGG 0.443189 5_3:+51706710 Msa0816910:exon
GAATTCCCCATTGCAGCTGC+AGG 0.443319 5_3:-51706771 None:intergenic
GAGTTGTTGTTGAGAGAGAT+TGG 0.449030 5_3:-51700515 None:intergenic
TGTGCTTCATCCACAAAATC+CGG 0.450204 5_3:-51700721 None:intergenic
ATGATCCCTGCAGCTGCAAT+GGG 0.451019 5_3:+51706765 Msa0816910:three_prime_UTR
GCTCATGTTTATAAACTGGT+TGG 0.454638 5_3:-51703804 None:intergenic
TATTGTCTGGGTCCTCAGTT+GGG 0.456375 5_3:-51704465 None:intergenic
TTTGCTCCATATCCATTCTC+AGG 0.461360 5_3:-51705463 None:intergenic
TGCAGAAGATCATAGGTTCT+TGG 0.461663 5_3:-51706040 None:intergenic
GCAAAATTTAGAAGAACAAT+GGG 0.462392 5_3:+51703825 Msa0816910:CDS
TGAGGTTGGGGAATTTGATC+CGG 0.464360 5_3:+51700702 Msa0816910:CDS
GAAATTAGGGGTTCTGAATG+AGG 0.464863 5_3:+51700657 Msa0816910:CDS
TAGACCAGAATCTTGACAGC+TGG 0.471760 5_3:+51705800 Msa0816910:CDS
TGAAGCATGCAGAAGATCAT+AGG 0.472661 5_3:-51706047 None:intergenic
ATATTGTCTGGGTCCTCAGT+TGG 0.472985 5_3:-51704466 None:intergenic
TCAGAATATAAGAGTTGCTC+TGG 0.472998 5_3:+51702725 Msa0816910:CDS
TGATCGGAGTTATGCATGAT+TGG 0.481628 5_3:+51705884 Msa0816910:CDS
ATCTTCCACAAGACGAGTGT+GGG 0.483729 5_3:-51702487 None:intergenic
GTTCTTGGATAAGTGTCAAA+TGG 0.485390 5_3:-51706025 None:intergenic
GGCAGGAGGGTACTTTGTCT+GGG 0.486517 5_3:+51703777 Msa0816910:CDS
TGTCTGATGAATTTGAGGTT+GGG 0.488431 5_3:+51700689 Msa0816910:CDS
GCCGTCACTTTCTTCTACCT+CGG 0.488561 5_3:+51700481 Msa0816910:CDS
ATCTCTCAATTGCCTGAGAA+TGG 0.494457 5_3:+51705451 Msa0816910:CDS
TTCTATCATGGACGAGCTTG+TGG 0.496750 5_3:+51706593 Msa0816910:CDS
ATCTGCTCCATGTATAAATT+GGG 0.499974 5_3:-51702571 None:intergenic
AGCAAAATTTAGAAGAACAA+TGG 0.501263 5_3:+51703824 Msa0816910:CDS
GTTATGTACGTGCTTACCAT+TGG 0.503666 5_3:+51705614 Msa0816910:CDS
AACAATGTCTGATGAATTTG+AGG 0.507825 5_3:+51700684 Msa0816910:CDS
AAGTTCAAGTTTCCAGGAGG+TGG 0.507980 5_3:+51702546 Msa0816910:CDS
TTGAAGCTAATAGGATGCTA+AGG 0.509046 5_3:+51703755 Msa0816910:CDS
TGTTAATGAGATCAGGAAGC+TGG 0.510397 5_3:+51700846 Msa0816910:CDS
CTCATCAATCATGCTTGAGA+TGG 0.518304 5_3:+51706524 Msa0816910:CDS
TTTGATGAATGGATCGGCGG+AGG 0.519320 5_3:-51700437 None:intergenic
GTCTGATGAATTTGAGGTTG+GGG 0.520356 5_3:+51700690 Msa0816910:CDS
GATGAATGGATCGGCGGAGG+TGG 0.524595 5_3:-51700434 None:intergenic
TGAAGAATTTGTTGAAATTG+GGG 0.529708 5_3:-51700582 None:intergenic
GATGATCCCTGCAGCTGCAA+TGG 0.532193 5_3:+51706764 Msa0816910:three_prime_UTR
GGTGAAGTTTGCAAACGTGC+AGG 0.533374 5_3:-51705499 None:intergenic
TTCCTTATATGTATGGACTC+TGG 0.533652 5_3:+51706839 Msa0816910:three_prime_UTR
ATGGAGCAAATCTTACCAAA+TGG 0.534971 5_3:+51705476 Msa0816910:CDS
ATAAGAGTTGCTCTGGATGT+TGG 0.539483 5_3:+51702732 Msa0816910:CDS
CAATCATGCTTGAGATGGAT+CGG 0.541237 5_3:+51706529 Msa0816910:CDS
TGTTCCCCACACTCGTCTTG+TGG 0.544319 5_3:+51702482 Msa0816910:CDS
TTAATCTCATCGTCTTCCAA+TGG 0.545743 5_3:-51705630 None:intergenic
TGAGATCAGGAAGCTGGAAT+CGG 0.547312 5_3:+51700852 Msa0816910:CDS
GGCTTGCCAGCCGATAGCCT+TGG 0.547916 5_3:-51706622 None:intergenic
ATCAAATCAAAAGCTTGACT+TGG 0.549295 5_3:-51702912 None:intergenic
TAGATAGCAGCTATTGTCGA+AGG 0.550514 5_3:-51704407 None:intergenic
GTGGAGATTGCCAAGGCTAT+CGG 0.550744 5_3:+51706612 Msa0816910:CDS
AAATGATGAAGTGAAATTGA+AGG 0.550749 5_3:+51700765 Msa0816910:CDS
GCTGGAATCGGTGGAGAGAG+GGG 0.551984 5_3:+51700864 Msa0816910:CDS
AATGTTATGGACATGAGAGC+TGG 0.553894 5_3:+51705655 Msa0816910:CDS
AATGGATCGGCGGAGGTGGA+TGG 0.556107 5_3:-51700430 None:intergenic
AGACCAGAATCTTGACAGCT+GGG 0.557207 5_3:+51705801 Msa0816910:CDS
TTGATCGGTTGTTGTTGTTG+TGG 0.559001 5_3:-51700548 None:intergenic
CTCAGCCGTGTCTCGCAATG+TGG 0.560028 5_3:-51706643 None:intergenic
GTTGCTCTGGATGTTGGCTG+TGG 0.560479 5_3:+51702738 Msa0816910:CDS
TGAGAGGCATTGTCCAGTTG+AGG 0.561494 5_3:+51700894 Msa0816910:CDS
CACATTGCGAGACACGGCTG+AGG 0.562629 5_3:+51706644 Msa0816910:CDS
TGAGCGTGGTGTCCCAGCGA+TGG 0.563033 5_3:+51702857 Msa0816910:CDS
ACATGGAGCAGATCAATACT+TGG 0.563213 5_3:+51702581 Msa0816910:CDS
AAGCTGGAATCGGTGGAGAG+AGG 0.563583 5_3:+51700862 Msa0816910:CDS
ATGTCTGATGAATTTGAGGT+TGG 0.564124 5_3:+51700688 Msa0816910:CDS
TCCTCAGTTGGGTCACAGAG+TGG 0.565777 5_3:-51704454 None:intergenic
CTGGTTAGGGTTGATTATGG+AGG 0.568734 5_3:-51700611 None:intergenic
GAGGTTTAGTTTCTGCCTCA+CGG 0.569050 5_3:-51704432 None:intergenic
CACTATACCAGATATTGTCT+GGG 0.572661 5_3:-51704477 None:intergenic
ATGAACATCCTTTGGAGCAA+CGG 0.573255 5_3:-51702811 None:intergenic
CGGATGTATACATGTCCACC+AGG 0.573803 5_3:-51706561 None:intergenic
CAAATGCTGCCACCATCGCT+GGG 0.574502 5_3:-51702869 None:intergenic
GCAAGCCACATTGCGAGACA+CGG 0.574862 5_3:+51706638 Msa0816910:CDS
TTAGGGGTTCTGAATGAGGA+TGG 0.576410 5_3:+51700661 Msa0816910:CDS
TCAGTTGGGTCACAGAGTGG+AGG 0.576617 5_3:-51704451 None:intergenic
GATCAGGAAGCTGGAATCGG+TGG 0.578234 5_3:+51700855 Msa0816910:CDS
ATATATGACCGTGGGCTGAT+CGG 0.578664 5_3:+51705868 Msa0816910:CDS
TCTTCTACCTCGGTAAACAC+TGG 0.580466 5_3:+51700491 Msa0816910:CDS
AGCCCACGGTCATATATCAC+AGG 0.582608 5_3:-51705862 None:intergenic
ATCCAATTTGCTCTTGAGCG+TGG 0.584623 5_3:+51702843 Msa0816910:CDS
CGAATCAAAATATTGGAATG+AGG 0.585929 5_3:+51705582 Msa0816910:CDS
TATCTTCCACAAGACGAGTG+TGG 0.590690 5_3:-51702488 None:intergenic
AATTCCCCATTGCAGCTGCA+GGG 0.592287 5_3:-51706770 None:intergenic
CCATGATAGAAAGAGAATCT+CGG 0.594394 5_3:-51706581 None:intergenic
GCTAATAGGATGCTAAGGGC+AGG 0.597013 5_3:+51703760 Msa0816910:CDS
AGATAGCAGCTATTGTCGAA+GGG 0.600387 5_3:-51704406 None:intergenic
AGAGAGGGGAGAGATTTGAG+AGG 0.601163 5_3:+51700878 Msa0816910:CDS
TCGTCTTGTGGAAGATAAAG+GGG 0.601257 5_3:+51702494 Msa0816910:CDS
AATAGGATGCTAAGGGCAGG+AGG 0.602368 5_3:+51703763 Msa0816910:CDS
ATACTTGGACCATATTTCCA+AGG 0.607174 5_3:+51702596 Msa0816910:CDS
AGGATTAATTGGACTCGAGA+TGG 0.610051 5_3:+51702951 Msa0816910:CDS
GGTGGCACCCAATTTATACA+TGG 0.618391 5_3:+51702564 Msa0816910:CDS
GCGTGGTGTCCCAGCGATGG+TGG 0.619449 5_3:+51702860 Msa0816910:CDS
TGAAGCTAATAGGATGCTAA+GGG 0.624119 5_3:+51703756 Msa0816910:CDS
CGTGAAAATTAAGAAATTAG+GGG 0.624719 5_3:+51700645 Msa0816910:CDS
CTATACCTAATCAGCTCTTG+CGG 0.624952 5_3:-51706895 None:intergenic
TGCCTGTGATATATGACCGT+GGG 0.626136 5_3:+51705860 Msa0816910:CDS
AGATTGCCAAGGCTATCGGC+TGG 0.629883 5_3:+51706616 Msa0816910:CDS
GTAGAAGAAAGTGACGGCGA+CGG 0.631848 5_3:-51700476 None:intergenic
ACATTGCGAGACACGGCTGA+GGG 0.636605 5_3:+51706645 Msa0816910:CDS
GCATAACTCCGATCAGCCCA+CGG 0.643651 5_3:-51705876 None:intergenic
TCCACTCTGTGACCCAACTG+AGG 0.650473 5_3:+51704453 Msa0816910:CDS
CGAGCTTGTGGAGATTGCCA+AGG 0.652296 5_3:+51706605 Msa0816910:CDS
TTGCCTGTGATATATGACCG+TGG 0.653035 5_3:+51705859 Msa0816910:CDS
TCATTAACATTATCCAAACA+AGG 0.656304 5_3:-51700832 None:intergenic
CTTATATGTATGGACTCTGG+AGG 0.667077 5_3:+51706842 Msa0816910:three_prime_UTR
AATTTAGAAGAACAATGGGA+AGG 0.667240 5_3:+51703829 Msa0816910:CDS
AAGATCCTATAACTTGCATG+TGG 0.669433 5_3:-51706669 None:intergenic
TCTTCCACAAGACGAGTGTG+GGG 0.670598 5_3:-51702486 None:intergenic
ACGGTCATATATCACAGGCA+AGG 0.670975 5_3:-51705857 None:intergenic
GAAGAATTTGTTGAAATTGG+GGG 0.671241 5_3:-51700581 None:intergenic
ATAGGATGCTAAGGGCAGGA+GGG 0.671825 5_3:+51703764 Msa0816910:CDS
ATGGATCGGATACTTAGACC+TGG 0.683061 5_3:+51706543 Msa0816910:CDS
AAATTGGATTACAAGAGACA+AGG 0.693865 5_3:+51702521 Msa0816910:CDS
GACGGCGACGGTGAAGAACG+CGG 0.695199 5_3:-51700464 None:intergenic
ACCTGATTGCATCAACCGCG+TGG 0.695285 5_3:-51706711 None:intergenic
CGTCTTGTGGAAGATAAAGG+GGG 0.698310 5_3:+51702495 Msa0816910:CDS
GATCGGATACTTAGACCTGG+TGG 0.715952 5_3:+51706546 Msa0816910:CDS
GATTGGACCAGTGTTTACCG+AGG 0.722104 5_3:-51700498 None:intergenic
GATAAGTTCAAGTTTCCAGG+AGG 0.725442 5_3:+51702543 Msa0816910:CDS
ACCGAGGTAGAAGAAAGTGA+CGG 0.727876 5_3:-51700482 None:intergenic
TAGCTGCTATCTAAACCGTG+AGG 0.772667 5_3:+51704417 Msa0816910:CDS
TGATCCCTGCAGCTGCAATG+GGG 0.780340 5_3:+51706766 Msa0816910:three_prime_UTR
TGTGATAAGCTCATACCACG+CGG 0.789947 5_3:+51706696 Msa0816910:CDS
GGCGACGGTGAAGAACGCGG+CGG 0.842096 5_3:-51700461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATAAAAAAAAAAA+GGG - chr5_3:51703376-51703395 None:intergenic 0.0%
!! TTATTATTATAAAAAAAAAA+AGG - chr5_3:51703377-51703396 None:intergenic 0.0%
!!! AAGTTTTAATATTCATTTAT+CGG + chr5_3:51702220-51702239 Msa0816910:intron 10.0%
!! TTTATAATAATAAAATCCTT+TGG + chr5_3:51703384-51703403 Msa0816910:intron 10.0%
!! AAATTTATATGAAATATAGA+AGG - chr5_3:51704978-51704997 None:intergenic 10.0%
!!! AAGAAATTTGAATTTTGTAA+GGG + chr5_3:51700790-51700809 Msa0816910:CDS 15.0%
!!! AGTTTTACTTATAATAAACT+TGG - chr5_3:51701816-51701835 None:intergenic 15.0%
!! TTATTATAAGTAAAACTTGT+TGG + chr5_3:51701819-51701838 Msa0816910:intron 15.0%
!! ATAATAATAAAATCCTTTGA+GGG + chr5_3:51703178-51703197 Msa0816910:intron 15.0%
!! ATTTAGTAATTTATTAGTGT+TGG + chr5_3:51704242-51704261 Msa0816910:intron 15.0%
!! ATTACTAAAAATGATAAACT+TGG - chr5_3:51705306-51705325 None:intergenic 15.0%
!!! ATTATTTTCATTGTCAATTT+AGG + chr5_3:51705407-51705426 Msa0816910:intron 15.0%
!! CTATATATGATTTCTAATTT+AGG + chr5_3:51705996-51706015 Msa0816910:intron 15.0%
!! AGAATATAAAAACTTAGATT+TGG - chr5_3:51706161-51706180 None:intergenic 15.0%
!! CAATATAATTTATTTCAAGA+TGG - chr5_3:51706346-51706365 None:intergenic 15.0%
!! CATCTTGAAATAAATTATAT+TGG + chr5_3:51706344-51706363 Msa0816910:intron 15.0%
!! TAAAAATAAGAAACTTGTAT+AGG + chr5_3:51706415-51706434 Msa0816910:intron 15.0%
!!! TTGAAGAATTTGTTGAAATT+GGG - chr5_3:51700586-51700605 None:intergenic 20.0%
!!! GAAGAAATTTGAATTTTGTA+AGG + chr5_3:51700789-51700808 Msa0816910:CDS 20.0%
!! AGCTTATATAACAGTTAAAA+GGG - chr5_3:51701196-51701215 None:intergenic 20.0%
!!! TTTATTTTGTCATAAGTTAG+CGG - chr5_3:51701258-51701277 None:intergenic 20.0%
!!! AATTATTTTGTCATATGAAG+TGG - chr5_3:51701334-51701353 None:intergenic 20.0%
!! TCATATGACAAAATAATTAG+CGG + chr5_3:51701336-51701355 Msa0816910:intron 20.0%
!! GTAGTATAATTAGAGTTTAA+TGG + chr5_3:51701576-51701595 Msa0816910:intron 20.0%
!! TGCAATATATAGTTATATCA+GGG - chr5_3:51702034-51702053 None:intergenic 20.0%
!! ATGCAATATATAGTTATATC+AGG - chr5_3:51702035-51702054 None:intergenic 20.0%
!!! TTGAATGAACCTTTTAATAA+TGG + chr5_3:51702071-51702090 Msa0816910:intron 20.0%
!!! TAATATTCATTTATCGGTTT+TGG + chr5_3:51702226-51702245 Msa0816910:intron 20.0%
!!! AGATCATTGATATATAGTTT+TGG - chr5_3:51702308-51702327 None:intergenic 20.0%
!!! ATGATCTTTAAAAGCATAAA+TGG + chr5_3:51702321-51702340 Msa0816910:intron 20.0%
!!! ATATTAAGCTTTTTTCTTGT+AGG + chr5_3:51702446-51702465 Msa0816910:intron 20.0%
!! AATTATAACATGCAATTCTA+CGG - chr5_3:51703023-51703042 None:intergenic 20.0%
!! CATAATAATAAAATCCTTTG+AGG + chr5_3:51703177-51703196 Msa0816910:intron 20.0%
!! TAATAATAAAATCCTTTGAG+GGG + chr5_3:51703179-51703198 Msa0816910:intron 20.0%
!! TCATTAGTAATGATTGATTA+GGG - chr5_3:51703505-51703524 None:intergenic 20.0%
!! ATCATTAGTAATGATTGATT+AGG - chr5_3:51703506-51703525 None:intergenic 20.0%
!! ATCATTACTAATGATTGATT+AGG + chr5_3:51703511-51703530 Msa0816910:intron 20.0%
!! TCATTACTAATGATTGATTA+GGG + chr5_3:51703512-51703531 Msa0816910:intron 20.0%
!! TATCAATAACTAAATCTAGA+TGG - chr5_3:51703873-51703892 None:intergenic 20.0%
!!! AAAATGTCCACATTTAAAAT+AGG - chr5_3:51703942-51703961 None:intergenic 20.0%
!! AACAATTAGTGAACAAATTA+TGG - chr5_3:51703980-51703999 None:intergenic 20.0%
!! ACTAACATGTAATCTTTAAA+TGG + chr5_3:51704036-51704055 Msa0816910:intron 20.0%
!! ATTGTTTGCGTAAAATTTAT+CGG - chr5_3:51704514-51704533 None:intergenic 20.0%
!!! AATATATAGTTTGAAACAAC+CGG + chr5_3:51704614-51704633 Msa0816910:intron 20.0%
!! TTCTGTTAATTATTGATCAT+GGG - chr5_3:51704794-51704813 None:intergenic 20.0%
!! TTTCTGTTAATTATTGATCA+TGG - chr5_3:51704795-51704814 None:intergenic 20.0%
!!! ATTTGTTTCTATTTTTTTCC+AGG - chr5_3:51705104-51705123 None:intergenic 20.0%
!! TAAATTGAAAACTGAATGAT+AGG + chr5_3:51705140-51705159 Msa0816910:intron 20.0%
!! TTCTAGATATAAAATTCCAT+GGG - chr5_3:51705245-51705264 None:intergenic 20.0%
!! TTTCTAGATATAAAATTCCA+TGG - chr5_3:51705246-51705265 None:intergenic 20.0%
!!! TGTGTTTTATTACATTTTAC+AGG + chr5_3:51705366-51705385 Msa0816910:intron 20.0%
!!! AGTTTTTATATTCTCTTCTT+AGG + chr5_3:51706167-51706186 Msa0816910:intron 20.0%
!!! CATTTTTCATTGCTTATTTA+CGG + chr5_3:51706374-51706393 Msa0816910:intron 20.0%
!!! TGAAGAATTTGTTGAAATTG+GGG - chr5_3:51700585-51700604 None:intergenic 25.0%
!!! GTTGAAGAATTTGTTGAAAT+TGG - chr5_3:51700587-51700606 None:intergenic 25.0%
! ACCGTGAAAATTAAGAAATT+AGG + chr5_3:51700643-51700662 Msa0816910:CDS 25.0%
!! CCCTAATTTCTTAATTTTCA+CGG - chr5_3:51700647-51700666 None:intergenic 25.0%
! CCGTGAAAATTAAGAAATTA+GGG + chr5_3:51700644-51700663 Msa0816910:CDS 25.0%
! CGTGAAAATTAAGAAATTAG+GGG + chr5_3:51700645-51700664 Msa0816910:CDS 25.0%
! AAATGATGAAGTGAAATTGA+AGG + chr5_3:51700765-51700784 Msa0816910:CDS 25.0%
! TCATTAACATTATCCAAACA+AGG - chr5_3:51700835-51700854 None:intergenic 25.0%
! ATTTGTTTGGTAAAAAACAG+TGG + chr5_3:51701005-51701024 Msa0816910:intron 25.0%
!! GTTGATAAGTTAACTTATAG+TGG + chr5_3:51701031-51701050 Msa0816910:intron 25.0%
! GAGCTTATATAACAGTTAAA+AGG - chr5_3:51701197-51701216 None:intergenic 25.0%
!! TTGTAACATCAGAACTTTTT+AGG + chr5_3:51701502-51701521 Msa0816910:intron 25.0%
! ATTAGATATCAGTGTAAAAC+AGG + chr5_3:51701708-51701727 Msa0816910:intron 25.0%
! TAATAAACTTGGAAAATGCT+AGG - chr5_3:51701805-51701824 None:intergenic 25.0%
!! TTTGCATAAGTAGAAGTTTT+AGG + chr5_3:51701909-51701928 Msa0816910:intron 25.0%
!! TTGCATAAGTAGAAGTTTTA+GGG + chr5_3:51701910-51701929 Msa0816910:intron 25.0%
! TATATAGTTATATCAGGGAA+AGG - chr5_3:51702029-51702048 None:intergenic 25.0%
!! AGGTTCATTCAAGTTAAAAT+AGG - chr5_3:51702063-51702082 None:intergenic 25.0%
! AAATGGAGAAAAATATGTCT+CGG + chr5_3:51702338-51702357 Msa0816910:intron 25.0%
!!! TACTTTGGTTTCTCATTTTA+AGG + chr5_3:51702627-51702646 Msa0816910:intron 25.0%
!!! CTTTTTTTCGCTAGTTTTTA+TGG + chr5_3:51703108-51703127 Msa0816910:intron 25.0%
! AAATAGAAAATAGAGACCAA+AGG - chr5_3:51703403-51703422 None:intergenic 25.0%
! TCATTACCTGATATCATTAT+TGG + chr5_3:51703543-51703562 Msa0816910:intron 25.0%
!! TTTTGCTCATGTTTATAAAC+TGG - chr5_3:51703811-51703830 None:intergenic 25.0%
! AGCAAAATTTAGAAGAACAA+TGG + chr5_3:51703824-51703843 Msa0816910:CDS 25.0%
! GCAAAATTTAGAAGAACAAT+GGG + chr5_3:51703825-51703844 Msa0816910:CDS 25.0%
! ATGAATAAATCATTGAGAGA+GGG - chr5_3:51704081-51704100 None:intergenic 25.0%
! AATGAATAAATCATTGAGAG+AGG - chr5_3:51704082-51704101 None:intergenic 25.0%
! TATAGTTAAAACTCTTGCTT+TGG - chr5_3:51704107-51704126 None:intergenic 25.0%
! TACTAAATATTCAAGTACAG+TGG - chr5_3:51704230-51704249 None:intergenic 25.0%
!!! TGGAAGTTTTTGAAAAAAGA+TGG + chr5_3:51704361-51704380 Msa0816910:CDS 25.0%
!!! GGAAGTTTTTGAAAAAAGAT+GGG + chr5_3:51704362-51704381 Msa0816910:CDS 25.0%
! TTGTTTGCGTAAAATTTATC+GGG - chr5_3:51704513-51704532 None:intergenic 25.0%
! AGAATCAAGGAGTAAAAAAT+CGG + chr5_3:51704580-51704599 Msa0816910:intron 25.0%
!! ATATATAGTTTGAAACAACC+GGG + chr5_3:51704615-51704634 Msa0816910:intron 25.0%
! CTAGCATTTAATATCAATGA+AGG - chr5_3:51704661-51704680 None:intergenic 25.0%
!!! CTATATTTTTTGTTCATCCA+AGG + chr5_3:51704685-51704704 Msa0816910:intron 25.0%
! AATTTATAGCTTCAACGAAA+TGG - chr5_3:51704727-51704746 None:intergenic 25.0%
!!! TTTTATAATTCTAGCCTTCT+AGG + chr5_3:51705022-51705041 Msa0816910:intron 25.0%
!! ATCCAGAAAAGAACTTTTTA+AGG + chr5_3:51705558-51705577 Msa0816910:CDS 25.0%
!!! CTCATTCCAATATTTTGATT+CGG - chr5_3:51705584-51705603 None:intergenic 25.0%
! GATGAGATTAAGAAATGTTA+TGG + chr5_3:51705642-51705661 Msa0816910:CDS 25.0%
! TTGTGCAAGATACTAAAATA+TGG + chr5_3:51705712-51705731 Msa0816910:intron 25.0%
!!! GATTGTTTTGTAAATATGTC+AGG + chr5_3:51706114-51706133 Msa0816910:intron 25.0%
! TACTGAGATATAGATTCTAA+AGG - chr5_3:51706318-51706337 None:intergenic 25.0%
! ACAAAGAATCTAGACTAATT+TGG - chr5_3:51707055-51707074 None:intergenic 25.0%
!! GAAGAATTTGTTGAAATTGG+GGG - chr5_3:51700584-51700603 None:intergenic 30.0%
! TTCTTAATTTTCACGGTTTC+TGG - chr5_3:51700640-51700659 None:intergenic 30.0%
AACAATGTCTGATGAATTTG+AGG + chr5_3:51700684-51700703 Msa0816910:CDS 30.0%
! TGAAGCACAAATTGATGATA+AGG + chr5_3:51700735-51700754 Msa0816910:CDS 30.0%
TGGATAATGTTAATGAGATC+AGG + chr5_3:51700839-51700858 Msa0816910:CDS 30.0%
TAAACGAGCTAATTATACAG+CGG - chr5_3:51701142-51701161 None:intergenic 30.0%
GTTATATAAGCTCGTTTAAC+TGG + chr5_3:51701204-51701223 Msa0816910:intron 30.0%
CATATGAGCTTATATGCTAT+AGG + chr5_3:51701443-51701462 Msa0816910:intron 30.0%
AAAATGACTTAGAAAGCAAG+AGG - chr5_3:51701640-51701659 None:intergenic 30.0%
TAAATTGCTCGTATAGAAGT+AGG + chr5_3:51701659-51701678 Msa0816910:intron 30.0%
AAATTGCTCGTATAGAAGTA+GGG + chr5_3:51701660-51701679 Msa0816910:intron 30.0%
! GAAATAGCAAGTGACAATTT+TGG - chr5_3:51701882-51701901 None:intergenic 30.0%
!! AAATTGTCACTTGCTATTTC+TGG + chr5_3:51701882-51701901 Msa0816910:intron 30.0%
GCATAAGCTTATCATAAAAG+AGG - chr5_3:51701969-51701988 None:intergenic 30.0%
GGTTGTTCACCATTATTAAA+AGG - chr5_3:51702083-51702102 None:intergenic 30.0%
AAAGTCGTGGAGAAAAAATA+TGG - chr5_3:51702123-51702142 None:intergenic 30.0%
!! GTATCACTGTCACTTAATTT+TGG + chr5_3:51702145-51702164 Msa0816910:intron 30.0%
TCGTCTTATAATCGATAATG+AGG + chr5_3:51702280-51702299 Msa0816910:intron 30.0%
AAATTGGATTACAAGAGACA+AGG + chr5_3:51702521-51702540 Msa0816910:CDS 30.0%
ATCTGCTCCATGTATAAATT+GGG - chr5_3:51702574-51702593 None:intergenic 30.0%
ACATAATGACCTTGGAAATA+TGG - chr5_3:51702608-51702627 None:intergenic 30.0%
!! TTTGGTTTCTCATTTTAAGG+CGG + chr5_3:51702630-51702649 Msa0816910:intron 30.0%
!! TATCATGCACATGTTTTAGA+TGG + chr5_3:51702683-51702702 Msa0816910:intron 30.0%
ATCAAATCAAAAGCTTGACT+TGG - chr5_3:51702915-51702934 None:intergenic 30.0%
AAAACTAGCGAAAAAAAGAG+TGG - chr5_3:51703106-51703125 None:intergenic 30.0%
!!! GCTAGTTTTTATGGTATGAA+TGG + chr5_3:51703117-51703136 Msa0816910:intron 30.0%
TTGTGTAAAAACAGGGTAAA+AGG + chr5_3:51703276-51703295 Msa0816910:intron 30.0%
TAAAAAAAAAAAGGGCAACC+CGG - chr5_3:51703368-51703387 None:intergenic 30.0%
AGCAATCCAATAATGATATC+AGG - chr5_3:51703552-51703571 None:intergenic 30.0%
ATCATTATTGGATTGCTAGT+AGG + chr5_3:51703555-51703574 Msa0816910:intron 30.0%
!! AAGACAAATTTGTTGTGAAC+AGG + chr5_3:51703579-51703598 Msa0816910:intron 30.0%
!! AGACAAATTTGTTGTGAACA+GGG + chr5_3:51703580-51703599 Msa0816910:intron 30.0%
CTCATGTTTATAAACTGGTT+GGG - chr5_3:51703806-51703825 None:intergenic 30.0%
AATTTAGAAGAACAATGGGA+AGG + chr5_3:51703829-51703848 Msa0816910:CDS 30.0%
!! TTGCACACCTATTTTAAATG+TGG + chr5_3:51703932-51703951 Msa0816910:intron 30.0%
TGAATAAATCATTGAGAGAG+GGG - chr5_3:51704080-51704099 None:intergenic 30.0%
TGAGCAGATATTTGATATCA+TGG - chr5_3:51704132-51704151 None:intergenic 30.0%
TAACAGTCAATTGCGAAAAT+TGG - chr5_3:51704161-51704180 None:intergenic 30.0%
ATGAGCTGTTGATCATATAA+AGG - chr5_3:51704818-51704837 None:intergenic 30.0%
CTTCTGTTAATTGTTGATCT+TGG - chr5_3:51704955-51704974 None:intergenic 30.0%
TGAAGTGTACACTAAAATTG+CGG + chr5_3:51705050-51705069 Msa0816910:intron 30.0%
!!! GTTTCTATTTTTTTCCAGGA+AGG - chr5_3:51705100-51705119 None:intergenic 30.0%
TGGTTACACACATTTGTATA+GGG + chr5_3:51705198-51705217 Msa0816910:intron 30.0%
CTAAAAATGATAAACTTGGC+TGG - chr5_3:51705302-51705321 None:intergenic 30.0%
ATAATTGAACACCCAATCAA+AGG - chr5_3:51705392-51705411 None:intergenic 30.0%
TTAAGGCCGAATCAAAATAT+TGG + chr5_3:51705575-51705594 Msa0816910:CDS 30.0%
CGAATCAAAATATTGGAATG+AGG + chr5_3:51705582-51705601 Msa0816910:CDS 30.0%
GCAAGATACTAAAATATGGT+AGG + chr5_3:51705716-51705735 Msa0816910:intron 30.0%
TACTGAGAAGTTCACAATAT+TGG - chr5_3:51705963-51705982 None:intergenic 30.0%
CAAAACAATCTATCAACACA+AGG - chr5_3:51706104-51706123 None:intergenic 30.0%
ATTTGGTCAATCCACATATA+AGG - chr5_3:51706144-51706163 None:intergenic 30.0%
TTCTCTCAAGCAAAATGAAA+TGG + chr5_3:51706215-51706234 Msa0816910:intron 30.0%
TCAAGCAAAATGAAATGGTT+TGG + chr5_3:51706220-51706239 Msa0816910:intron 30.0%
AGTATATCAGTGTAACAGAT+TGG - chr5_3:51706250-51706269 None:intergenic 30.0%
! ACTGCATTTTATGTGTATGT+TGG + chr5_3:51706441-51706460 Msa0816910:intron 30.0%
! CTGCATTTTATGTGTATGTT+GGG + chr5_3:51706442-51706461 Msa0816910:intron 30.0%
GGTTATAAAACTCATGTTCT+TGG + chr5_3:51706731-51706750 Msa0816910:three_prime_UTR 30.0%
TCAATACTTGAGACAAGTTT+AGG + chr5_3:51706792-51706811 Msa0816910:three_prime_UTR 30.0%
ATCTCACTTCCTTATATGTA+TGG + chr5_3:51706832-51706851 Msa0816910:three_prime_UTR 30.0%
GTAGTGTTTCTTTATCATAC+AGG - chr5_3:51706984-51707003 None:intergenic 30.0%
CACAAGCAAAAAACAACAAA+GGG + chr5_3:51707013-51707032 Msa0816910:three_prime_UTR 30.0%
ACAAAGGGAGTCTAAAAATT+TGG + chr5_3:51707028-51707047 Msa0816910:three_prime_UTR 30.0%
TTTGTTGAAATTGGGGGAAA+TGG - chr5_3:51700578-51700597 None:intergenic 35.0%
! ATGTCTGATGAATTTGAGGT+TGG + chr5_3:51700688-51700707 Msa0816910:CDS 35.0%
! TGTCTGATGAATTTGAGGTT+GGG + chr5_3:51700689-51700708 Msa0816910:CDS 35.0%
GAGTGAGTATATACCTTGTT+TGG + chr5_3:51700819-51700838 Msa0816910:CDS 35.0%
GGAGAAACGATTGAATTGTT+TGG + chr5_3:51700915-51700934 Msa0816910:CDS 35.0%
! ACGATTGAATTGTTTGGTTC+CGG + chr5_3:51700921-51700940 Msa0816910:intron 35.0%
! AGGTACATTTCGGATTTGTT+TGG + chr5_3:51700992-51701011 Msa0816910:intron 35.0%
!! CTTATGTAGCGGTTTTATAG+TGG - chr5_3:51701302-51701321 None:intergenic 35.0%
TGAGAAAATGACTTACCGAA+CGG + chr5_3:51701409-51701428 Msa0816910:intron 35.0%
TATAGGCTCAAATTGTGTCT+TGG + chr5_3:51701460-51701479 Msa0816910:intron 35.0%
! ATAAAAGAGGAGAGCTTGTT+AGG - chr5_3:51701956-51701975 None:intergenic 35.0%
ATAGTTATATCAGGGAAAGG+AGG - chr5_3:51702026-51702045 None:intergenic 35.0%
AAATTATAATCCACTCCACC+TGG - chr5_3:51702387-51702406 None:intergenic 35.0%
!!! AAGCTTTTTTCTTGTAGGTG+TGG + chr5_3:51702451-51702470 Msa0816910:intron 35.0%
AAGATAAAGGGGGTCAAAAT+TGG + chr5_3:51702505-51702524 Msa0816910:CDS 35.0%
! AAGGATAAGTTCAAGTTTCC+AGG + chr5_3:51702540-51702559 Msa0816910:CDS 35.0%
GATCTGCTCCATGTATAAAT+TGG - chr5_3:51702575-51702594 None:intergenic 35.0%
ATACTTGGACCATATTTCCA+AGG + chr5_3:51702596-51702615 Msa0816910:CDS 35.0%
TCCAAGGTCATTATGTACTT+TGG + chr5_3:51702612-51702631 Msa0816910:intron 35.0%
ACCAAAGTACATAATGACCT+TGG - chr5_3:51702616-51702635 None:intergenic 35.0%
ATGGTTCTTGACATCACATT+TGG + chr5_3:51702702-51702721 Msa0816910:CDS 35.0%
TCAGAATATAAGAGTTGCTC+TGG + chr5_3:51702725-51702744 Msa0816910:CDS 35.0%
TGATTCTCATGAACATCCTT+TGG - chr5_3:51702822-51702841 None:intergenic 35.0%
ATGGTATGAGTTCTCTTGTA+TGG + chr5_3:51702970-51702989 Msa0816910:intron 35.0%
ATTTACATAAAACCGCGACT+AGG - chr5_3:51703057-51703076 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr5_3:51703275-51703294 None:intergenic 35.0%
GAATTGGGATGAAAAAAGAG+AGG - chr5_3:51703429-51703448 None:intergenic 35.0%
TCCAAGAAGAAGAATCTCAA+GGG - chr5_3:51703455-51703474 None:intergenic 35.0%
TTCCAAGAAGAAGAATCTCA+AGG - chr5_3:51703456-51703475 None:intergenic 35.0%
AACTGAAACAAAGACGTGAA+GGG - chr5_3:51703673-51703692 None:intergenic 35.0%
TAACTGAAACAAAGACGTGA+AGG - chr5_3:51703674-51703693 None:intergenic 35.0%
!! TTTTGCTGCTTGAAGCTAAT+AGG + chr5_3:51703746-51703765 Msa0816910:CDS 35.0%
TTGAAGCTAATAGGATGCTA+AGG + chr5_3:51703755-51703774 Msa0816910:CDS 35.0%
TGAAGCTAATAGGATGCTAA+GGG + chr5_3:51703756-51703775 Msa0816910:CDS 35.0%
GCTCATGTTTATAAACTGGT+TGG - chr5_3:51703807-51703826 None:intergenic 35.0%
! GATACTTTTCAGCTATAGAC+TGG + chr5_3:51703889-51703908 Msa0816910:intron 35.0%
! TGTACAACTGTGCTATTGAA+AGG + chr5_3:51704192-51704211 Msa0816910:intron 35.0%
! GTACAACTGTGCTATTGAAA+GGG + chr5_3:51704193-51704212 Msa0816910:intron 35.0%
TCCATTGTGAGTGTAACATT+GGG + chr5_3:51704294-51704313 Msa0816910:intron 35.0%
AAGATGGGTATGTTGCAATA+TGG + chr5_3:51704377-51704396 Msa0816910:CDS 35.0%
CACTATACCAGATATTGTCT+GGG - chr5_3:51704480-51704499 None:intergenic 35.0%
ACACTATACCAGATATTGTC+TGG - chr5_3:51704481-51704500 None:intergenic 35.0%
TTGCGTAAAATTTATCGGGA+AGG - chr5_3:51704509-51704528 None:intergenic 35.0%
TCTATCACACAAGACAATGA+TGG - chr5_3:51704548-51704567 None:intergenic 35.0%
ATCATTGTCTTGTGTGATAG+AGG + chr5_3:51704547-51704566 Msa0816910:intron 35.0%
AGGTTTCGAGAATAGAATCA+AGG + chr5_3:51704567-51704586 Msa0816910:intron 35.0%
CTATTTAATTCTACACGTCC+CGG - chr5_3:51704636-51704655 None:intergenic 35.0%
TATGATCAACAGCTCATCAA+AGG + chr5_3:51704821-51704840 Msa0816910:intron 35.0%
CAAAGTTATCTGGATGGAAA+TGG - chr5_3:51704861-51704880 None:intergenic 35.0%
TACACTTCAGTAAACCTAGA+AGG - chr5_3:51705039-51705058 None:intergenic 35.0%
! TTTTCTTCATCTAACCTTCC+TGG + chr5_3:51705083-51705102 Msa0816910:intron 35.0%
AAGTAGAATGTGATCTAACC+TGG + chr5_3:51705178-51705197 Msa0816910:intron 35.0%
CTATACAAATGTGTGTAACC+AGG - chr5_3:51705199-51705218 None:intergenic 35.0%
CTGGTTACACACATTTGTAT+AGG + chr5_3:51705197-51705216 Msa0816910:intron 35.0%
! ACATTTTACAGGCCTTTGAT+TGG + chr5_3:51705377-51705396 Msa0816910:intron 35.0%
! CATTTTACAGGCCTTTGATT+GGG + chr5_3:51705378-51705397 Msa0816910:intron 35.0%
ATGGAGCAAATCTTACCAAA+TGG + chr5_3:51705476-51705495 Msa0816910:CDS 35.0%
!! TTTATGCTTTGAAGCCTATC+AGG - chr5_3:51705523-51705542 None:intergenic 35.0%
! GGCCTTAAAAAGTTCTTTTC+TGG - chr5_3:51705563-51705582 None:intergenic 35.0%
TTAATCTCATCGTCTTCCAA+TGG - chr5_3:51705633-51705652 None:intergenic 35.0%
ATGAATGTTGTTCCTGTTAG+TGG + chr5_3:51705826-51705845 Msa0816910:CDS 35.0%
GTTCTTGGATAAGTGTCAAA+TGG - chr5_3:51706028-51706047 None:intergenic 35.0%
! TTTTCTTCTCAACAGAAAGC+AGG - chr5_3:51706075-51706094 None:intergenic 35.0%
TGCTTTCTGTTGAGAAGAAA+AGG + chr5_3:51706074-51706093 Msa0816910:CDS 35.0%
GAGAAATGCAACACATAGTT+AGG - chr5_3:51706486-51706505 None:intergenic 35.0%
CCATGATAGAAAGAGAATCT+CGG - chr5_3:51706584-51706603 None:intergenic 35.0%
! AAGATCCTATAACTTGCATG+TGG - chr5_3:51706672-51706691 None:intergenic 35.0%
ACATGCAAGTTATAGGATCT+TGG + chr5_3:51706671-51706690 Msa0816910:CDS 35.0%
TTCCTTATATGTATGGACTC+TGG + chr5_3:51706839-51706858 Msa0816910:three_prime_UTR 35.0%
TTATCATACAGGCAAGATAC+TGG - chr5_3:51706973-51706992 None:intergenic 35.0%
!!! CCTTTGTTGTTTTTTGCTTG+TGG - chr5_3:51707015-51707034 None:intergenic 35.0%
CCACAAGCAAAAAACAACAA+AGG + chr5_3:51707012-51707031 Msa0816910:three_prime_UTR 35.0%
! GAGTTGTTGTTGAGAGAGAT+TGG - chr5_3:51700518-51700537 None:intergenic 40.0%
! TTGATCGGTTGTTGTTGTTG+TGG - chr5_3:51700551-51700570 None:intergenic 40.0%
! TGTCTGGTTAGGGTTGATTA+TGG - chr5_3:51700617-51700636 None:intergenic 40.0%
!! GAAATTAGGGGTTCTGAATG+AGG + chr5_3:51700657-51700676 Msa0816910:CDS 40.0%
! GTCTGATGAATTTGAGGTTG+GGG + chr5_3:51700690-51700709 Msa0816910:CDS 40.0%
! GGAATTTGATCCGGATTTTG+TGG + chr5_3:51700711-51700730 Msa0816910:CDS 40.0%
TGTGCTTCATCCACAAAATC+CGG - chr5_3:51700724-51700743 None:intergenic 40.0%
TGTTAATGAGATCAGGAAGC+TGG + chr5_3:51700846-51700865 Msa0816910:CDS 40.0%
TTCAATCGTTTCTCCTCAAC+TGG - chr5_3:51700910-51700929 None:intergenic 40.0%
ATTAGCTCGTTTAACTGCAC+CGG + chr5_3:51701149-51701168 Msa0816910:intron 40.0%
TAACAGTTAAAAGGGCAACC+TGG - chr5_3:51701188-51701207 None:intergenic 40.0%
GAGAAAATGACTTACCGAAC+GGG + chr5_3:51701410-51701429 Msa0816910:intron 40.0%
TATGACTAAGAAGACCCGTT+CGG - chr5_3:51701427-51701446 None:intergenic 40.0%
ATGGACAGAAGACTCATTCA+TGG - chr5_3:51702104-51702123 None:intergenic 40.0%
TGGAGAAAAATATGTCTCGG+TGG + chr5_3:51702341-51702360 Msa0816910:intron 40.0%
AGAAAAATATGTCTCGGTGG+AGG + chr5_3:51702344-51702363 Msa0816910:intron 40.0%
GAAAAATATGTCTCGGTGGA+GGG + chr5_3:51702345-51702364 Msa0816910:intron 40.0%
GGTGTAATTTAAGCTTCTCC+AGG + chr5_3:51702366-51702385 Msa0816910:intron 40.0%
GTAATTTAAGCTTCTCCAGG+TGG + chr5_3:51702369-51702388 Msa0816910:intron 40.0%
ACTCGTCTTGTGGAAGATAA+AGG + chr5_3:51702492-51702511 Msa0816910:CDS 40.0%
CTCGTCTTGTGGAAGATAAA+GGG + chr5_3:51702493-51702512 Msa0816910:CDS 40.0%
TCGTCTTGTGGAAGATAAAG+GGG + chr5_3:51702494-51702513 Msa0816910:CDS 40.0%
! GATAAGTTCAAGTTTCCAGG+AGG + chr5_3:51702543-51702562 Msa0816910:CDS 40.0%
ACATGGAGCAGATCAATACT+TGG + chr5_3:51702581-51702600 Msa0816910:CDS 40.0%
! ATAAGAGTTGCTCTGGATGT+TGG + chr5_3:51702732-51702751 Msa0816910:CDS 40.0%
!! ATGAACATCCTTTGGAGCAA+CGG - chr5_3:51702814-51702833 None:intergenic 40.0%
AGGATTAATTGGACTCGAGA+TGG + chr5_3:51702951-51702970 Msa0816910:CDS 40.0%
! TCTACGGTTAGTTAGCTGTT+AGG - chr5_3:51703007-51703026 None:intergenic 40.0%
! TGCAAGTTTTTACCTAGTCG+CGG + chr5_3:51703042-51703061 Msa0816910:intron 40.0%
GCATATGCACTTGTTTACTC+TGG + chr5_3:51703139-51703158 Msa0816910:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr5_3:51703224-51703243 Msa0816910:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr5_3:51703268-51703287 Msa0816910:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr5_3:51703269-51703288 Msa0816910:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr5_3:51703302-51703321 Msa0816910:intron 40.0%
GAATCTCAAGGGGATGAATT+GGG - chr5_3:51703444-51703463 None:intergenic 40.0%
AGAATCTCAAGGGGATGAAT+TGG - chr5_3:51703445-51703464 None:intergenic 40.0%
CCAAGAAGAAGAATCTCAAG+GGG - chr5_3:51703454-51703473 None:intergenic 40.0%
GTTTGAACTTGTGATGCAGA+TGG + chr5_3:51703721-51703740 Msa0816910:intron 40.0%
! TGGGAAGGTATGACTCAAAT+TGG + chr5_3:51703844-51703863 Msa0816910:intron 40.0%
CAGCTATAGACTGGCATTTA+TGG + chr5_3:51703898-51703917 Msa0816910:intron 40.0%
! TCGCAATTGACTGTTACTTC+TGG + chr5_3:51704165-51704184 Msa0816910:intron 40.0%
CAATGTTACACTCACAATGG+AGG - chr5_3:51704295-51704314 None:intergenic 40.0%
CTCCATTGTGAGTGTAACAT+TGG + chr5_3:51704293-51704312 Msa0816910:intron 40.0%
ACCCAATGTTACACTCACAA+TGG - chr5_3:51704298-51704317 None:intergenic 40.0%
ATCTTACTACTCGTCTTTGC+TGG + chr5_3:51704341-51704360 Msa0816910:CDS 40.0%
! GAGTTTCACTCTCTTTTCCT+TGG - chr5_3:51704705-51704724 None:intergenic 40.0%
CTTCAGCAAAGTTATCTGGA+TGG - chr5_3:51704867-51704886 None:intergenic 40.0%
CATCCAGATAACTTTGCTGA+AGG + chr5_3:51704865-51704884 Msa0816910:intron 40.0%
CAACCTTCAGCAAAGTTATC+TGG - chr5_3:51704871-51704890 None:intergenic 40.0%
! TTTTCCTGTGGCTGCATATA+GGG - chr5_3:51705278-51705297 None:intergenic 40.0%
! TTTTTCCTGTGGCTGCATAT+AGG - chr5_3:51705279-51705298 None:intergenic 40.0%
ATCTCTCAATTGCCTGAGAA+TGG + chr5_3:51705451-51705470 Msa0816910:CDS 40.0%
CAATTGCCTGAGAATGGATA+TGG + chr5_3:51705457-51705476 Msa0816910:CDS 40.0%
TTTGCTCCATATCCATTCTC+AGG - chr5_3:51705466-51705485 None:intergenic 40.0%
GTTTGCAAACTTCACCTGAT+AGG + chr5_3:51705506-51705525 Msa0816910:CDS 40.0%
GTTATGTACGTGCTTACCAT+TGG + chr5_3:51705614-51705633 Msa0816910:CDS 40.0%
AATGTTATGGACATGAGAGC+TGG + chr5_3:51705655-51705674 Msa0816910:CDS 40.0%
TGATCGGAGTTATGCATGAT+TGG + chr5_3:51705884-51705903 Msa0816910:CDS 40.0%
TGCAGAAGATCATAGGTTCT+TGG - chr5_3:51706043-51706062 None:intergenic 40.0%
TGAAGCATGCAGAAGATCAT+AGG - chr5_3:51706050-51706069 None:intergenic 40.0%
CTCATCAATCATGCTTGAGA+TGG + chr5_3:51706524-51706543 Msa0816910:CDS 40.0%
CAATCATGCTTGAGATGGAT+CGG + chr5_3:51706529-51706548 Msa0816910:CDS 40.0%
CCGAGATTCTCTTTCTATCA+TGG + chr5_3:51706581-51706600 Msa0816910:CDS 40.0%
CTCCAGAGTCCATACATATA+AGG - chr5_3:51706844-51706863 None:intergenic 40.0%
CTTATATGTATGGACTCTGG+AGG + chr5_3:51706842-51706861 Msa0816910:three_prime_UTR 40.0%
CTATACCTAATCAGCTCTTG+CGG - chr5_3:51706898-51706917 None:intergenic 40.0%
!! GGTTTTGATGAATGGATCGG+CGG - chr5_3:51700443-51700462 None:intergenic 45.0%
!! GGCGGTTTTGATGAATGGAT+CGG - chr5_3:51700446-51700465 None:intergenic 45.0%
ACCGAGGTAGAAGAAAGTGA+CGG - chr5_3:51700485-51700504 None:intergenic 45.0%
TCTTCTACCTCGGTAAACAC+TGG + chr5_3:51700491-51700510 Msa0816910:CDS 45.0%
GGGGGAAATGGAGATTTGAT+CGG - chr5_3:51700566-51700585 None:intergenic 45.0%
! CTGGTTAGGGTTGATTATGG+AGG - chr5_3:51700614-51700633 None:intergenic 45.0%
!!! TTTTCACGGTTTCTGGTGTC+TGG - chr5_3:51700633-51700652 None:intergenic 45.0%
!! TTAGGGGTTCTGAATGAGGA+TGG + chr5_3:51700661-51700680 Msa0816910:CDS 45.0%
TGAGGTTGGGGAATTTGATC+CGG + chr5_3:51700702-51700721 Msa0816910:CDS 45.0%
TGAGATCAGGAAGCTGGAAT+CGG + chr5_3:51700852-51700871 Msa0816910:CDS 45.0%
ATCCGAAATGTACCTCGTCA+CGG - chr5_3:51700987-51701006 None:intergenic 45.0%
TTAGCTCGTTTAACTGCACC+GGG + chr5_3:51701150-51701169 Msa0816910:intron 45.0%
GGTTGAACGAGCTTATGTAG+CGG - chr5_3:51701313-51701332 None:intergenic 45.0%
GAAAGCAAGAGGACTCTCAT+TGG - chr5_3:51701629-51701648 None:intergenic 45.0%
!! GTAAAACTTGTTGGTCCCAG+TGG + chr5_3:51701828-51701847 Msa0816910:intron 45.0%
GACAGTGATACTGAAAGTCG+TGG - chr5_3:51702136-51702155 None:intergenic 45.0%
ATCTTCCACAAGACGAGTGT+GGG - chr5_3:51702490-51702509 None:intergenic 45.0%
TATCTTCCACAAGACGAGTG+TGG - chr5_3:51702491-51702510 None:intergenic 45.0%
CGTCTTGTGGAAGATAAAGG+GGG + chr5_3:51702495-51702514 Msa0816910:CDS 45.0%
! AAGTTCAAGTTTCCAGGAGG+TGG + chr5_3:51702546-51702565 Msa0816910:CDS 45.0%
GGTGGCACCCAATTTATACA+TGG + chr5_3:51702564-51702583 Msa0816910:CDS 45.0%
! ATCCAATTTGCTCTTGAGCG+TGG + chr5_3:51702843-51702862 Msa0816910:CDS 45.0%
TGATACATTGTTCACGCTGC+AGG + chr5_3:51702931-51702950 Msa0816910:CDS 45.0%
GTTCACGCTGCAGGATTAAT+TGG + chr5_3:51702940-51702959 Msa0816910:CDS 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr5_3:51703230-51703249 Msa0816910:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr5_3:51703231-51703250 Msa0816910:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr5_3:51703264-51703283 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr5_3:51703298-51703317 Msa0816910:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr5_3:51703301-51703320 Msa0816910:intron 45.0%
CCCCTTGAGATTCTTCTTCT+TGG + chr5_3:51703451-51703470 Msa0816910:intron 45.0%
TGTTGTGAACAGGGATTGCA+TGG + chr5_3:51703589-51703608 Msa0816910:intron 45.0%
CACAAGTTCAAACGAGGTGT+TGG - chr5_3:51703714-51703733 None:intergenic 45.0%
CTGCATCACAAGTTCAAACG+AGG - chr5_3:51703720-51703739 None:intergenic 45.0%
AGAGAGGGGTCTAAGTCAAA+GGG - chr5_3:51704066-51704085 None:intergenic 45.0%
ACAATGGAGGCTGCGATATT+AGG - chr5_3:51704282-51704301 None:intergenic 45.0%
! GAGGTTTAGTTTCTGCCTCA+CGG - chr5_3:51704435-51704454 None:intergenic 45.0%
TATTGTCTGGGTCCTCAGTT+GGG - chr5_3:51704468-51704487 None:intergenic 45.0%
ATATTGTCTGGGTCCTCAGT+TGG - chr5_3:51704469-51704488 None:intergenic 45.0%
TGTATAGGGTTTCTACCTGC+AGG + chr5_3:51705212-51705231 Msa0816910:intron 45.0%
!!! AACTTGGCTGGTTTTTCCTG+TGG - chr5_3:51705290-51705309 None:intergenic 45.0%
!! ATGGACATGAGAGCTGGTTT+TGG + chr5_3:51705661-51705680 Msa0816910:CDS 45.0%
TAGACCAGAATCTTGACAGC+TGG + chr5_3:51705800-51705819 Msa0816910:CDS 45.0%
AGACCAGAATCTTGACAGCT+GGG + chr5_3:51705801-51705820 Msa0816910:CDS 45.0%
TAACCCAGCTGTCAAGATTC+TGG - chr5_3:51705807-51705826 None:intergenic 45.0%
! AAGGTGTTTGAGCCACTAAC+AGG - chr5_3:51705841-51705860 None:intergenic 45.0%
ACGGTCATATATCACAGGCA+AGG - chr5_3:51705860-51705879 None:intergenic 45.0%
TTGCCTGTGATATATGACCG+TGG + chr5_3:51705859-51705878 Msa0816910:CDS 45.0%
TGCCTGTGATATATGACCGT+GGG + chr5_3:51705860-51705879 Msa0816910:CDS 45.0%
! ATATATGACCGTGGGCTGAT+CGG + chr5_3:51705868-51705887 Msa0816910:CDS 45.0%
TGTCAGGCTGTCCTTATATG+TGG + chr5_3:51706130-51706149 Msa0816910:intron 45.0%
ATGGATCGGATACTTAGACC+TGG + chr5_3:51706543-51706562 Msa0816910:CDS 45.0%
TTCTATCATGGACGAGCTTG+TGG + chr5_3:51706593-51706612 Msa0816910:CDS 45.0%
AGGGTCCACATGCAAGTTAT+AGG + chr5_3:51706664-51706683 Msa0816910:CDS 45.0%
TGTGATAAGCTCATACCACG+CGG + chr5_3:51706696-51706715 Msa0816910:CDS 45.0%
TTTGATGAATGGATCGGCGG+AGG - chr5_3:51700440-51700459 None:intergenic 50.0%
!! AACGCGGCGGTTTTGATGAA+TGG - chr5_3:51700451-51700470 None:intergenic 50.0%
GTAGAAGAAAGTGACGGCGA+CGG - chr5_3:51700479-51700498 None:intergenic 50.0%
! GCCGTCACTTTCTTCTACCT+CGG + chr5_3:51700481-51700500 Msa0816910:CDS 50.0%
GATTGGACCAGTGTTTACCG+AGG - chr5_3:51700501-51700520 None:intergenic 50.0%
!! CGGTTTCTGGTGTCTGGTTA+GGG - chr5_3:51700627-51700646 None:intergenic 50.0%
!! ACGGTTTCTGGTGTCTGGTT+AGG - chr5_3:51700628-51700647 None:intergenic 50.0%
AGAGAGGGGAGAGATTTGAG+AGG + chr5_3:51700878-51700897 Msa0816910:CDS 50.0%
!! TGAGAGGCATTGTCCAGTTG+AGG + chr5_3:51700894-51700913 Msa0816910:CDS 50.0%
! TGTTTGGTTCCGGTGCCTAA+AGG + chr5_3:51700931-51700950 Msa0816910:intron 50.0%
AGCCGTGACGAGGTACATTT+CGG + chr5_3:51700982-51701001 Msa0816910:intron 50.0%
TTGTGAAGTCGACGACCACT+GGG - chr5_3:51701846-51701865 None:intergenic 50.0%
TTTGTGAAGTCGACGACCAC+TGG - chr5_3:51701847-51701866 None:intergenic 50.0%
TTAAGCTTCTCCAGGTGGAG+TGG + chr5_3:51702374-51702393 Msa0816910:intron 50.0%
TCTTCCACAAGACGAGTGTG+GGG - chr5_3:51702489-51702508 None:intergenic 50.0%
! ATAAATTGGGTGCCACCTCC+TGG - chr5_3:51702561-51702580 None:intergenic 50.0%
!! GGCTGTGGTGTAGCTAGTTT+TGG + chr5_3:51702753-51702772 Msa0816910:CDS 50.0%
CACAATGTCCGTTGCTCCAA+AGG + chr5_3:51702803-51702822 Msa0816910:CDS 50.0%
CACCACGCTCAAGAGCAAAT+TGG - chr5_3:51702848-51702867 None:intergenic 50.0%
! AATCCTTTGAGGGGCAACCT+TGG + chr5_3:51703188-51703207 Msa0816910:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr5_3:51703208-51703227 None:intergenic 50.0%
GCTAATAGGATGCTAAGGGC+AGG + chr5_3:51703760-51703779 Msa0816910:CDS 50.0%
AATAGGATGCTAAGGGCAGG+AGG + chr5_3:51703763-51703782 Msa0816910:CDS 50.0%
ATAGGATGCTAAGGGCAGGA+GGG + chr5_3:51703764-51703783 Msa0816910:CDS 50.0%
CCTATCAACGCGACACATGA+AGG - chr5_3:51704012-51704031 None:intergenic 50.0%
! CCTTCATGTGTCGCGTTGAT+AGG + chr5_3:51704009-51704028 Msa0816910:intron 50.0%
GAGAGAGGGGTCTAAGTCAA+AGG - chr5_3:51704067-51704086 None:intergenic 50.0%
CTGAGGACCCAGACAATATC+TGG + chr5_3:51704470-51704489 Msa0816910:CDS 50.0%
TGTGGCTGCATATAGGGTCA+AGG - chr5_3:51705272-51705291 None:intergenic 50.0%
TTGACCCTATATGCAGCCAC+AGG + chr5_3:51705271-51705290 Msa0816910:intron 50.0%
TTGCAAACGTGCAGGCCATT+TGG - chr5_3:51705494-51705513 None:intergenic 50.0%
GGTGAAGTTTGCAAACGTGC+AGG - chr5_3:51705502-51705521 None:intergenic 50.0%
!!! GACATGAGAGCTGGTTTTGG+CGG + chr5_3:51705664-51705683 Msa0816910:CDS 50.0%
!!! ACATGAGAGCTGGTTTTGGC+GGG + chr5_3:51705665-51705684 Msa0816910:CDS 50.0%
AGCCCACGGTCATATATCAC+AGG - chr5_3:51705865-51705884 None:intergenic 50.0%
GATCGGATACTTAGACCTGG+TGG + chr5_3:51706546-51706565 Msa0816910:CDS 50.0%
CGGATGTATACATGTCCACC+AGG - chr5_3:51706564-51706583 None:intergenic 50.0%
GTGGAGATTGCCAAGGCTAT+CGG + chr5_3:51706612-51706631 Msa0816910:CDS 50.0%
ATGATCCCTGCAGCTGCAAT+GGG + chr5_3:51706765-51706784 Msa0816910:three_prime_UTR 50.0%
AATTCCCCATTGCAGCTGCA+GGG - chr5_3:51706773-51706792 None:intergenic 50.0%
TCAGACCGCAAGAGCTGATT+AGG + chr5_3:51706890-51706909 Msa0816910:three_prime_UTR 50.0%
GATCAGGAAGCTGGAATCGG+TGG + chr5_3:51700855-51700874 Msa0816910:CDS 55.0%
AAGCTGGAATCGGTGGAGAG+AGG + chr5_3:51700862-51700881 Msa0816910:CDS 55.0%
AGCTGGAATCGGTGGAGAGA+GGG + chr5_3:51700863-51700882 Msa0816910:CDS 55.0%
TCCGGTGCCTAAAGGTTACC+AGG + chr5_3:51700939-51700958 Msa0816910:intron 55.0%
GCCTGGTAACCTTTAGGCAC+CGG - chr5_3:51700943-51700962 None:intergenic 55.0%
ATCGGCGCCTGGTAACCTTT+AGG - chr5_3:51700949-51700968 None:intergenic 55.0%
CGGCTTCTAGGCCAAGGAAT+CGG - chr5_3:51700967-51700986 None:intergenic 55.0%
TGTACCTCGTCACGGCTTCT+AGG - chr5_3:51700979-51700998 None:intergenic 55.0%
ACCTGGTGCACTAAAGCTCC+CGG - chr5_3:51701171-51701190 None:intergenic 55.0%
TGTTCCCCACACTCGTCTTG+TGG + chr5_3:51702482-51702501 Msa0816910:CDS 55.0%
! GTTGCTCTGGATGTTGGCTG+TGG + chr5_3:51702738-51702757 Msa0816910:CDS 55.0%
CAAATGCTGCCACCATCGCT+GGG - chr5_3:51702872-51702891 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr5_3:51703243-51703262 Msa0816910:intron 55.0%
!! GGCAGGAGGGTACTTTGTCT+GGG + chr5_3:51703777-51703796 Msa0816910:CDS 55.0%
TCAGTTGGGTCACAGAGTGG+AGG - chr5_3:51704454-51704473 None:intergenic 55.0%
TCCACTCTGTGACCCAACTG+AGG + chr5_3:51704453-51704472 Msa0816910:CDS 55.0%
TCCTCAGTTGGGTCACAGAG+TGG - chr5_3:51704457-51704476 None:intergenic 55.0%
GCATAACTCCGATCAGCCCA+CGG - chr5_3:51705879-51705898 None:intergenic 55.0%
CGAGCTTGTGGAGATTGCCA+AGG + chr5_3:51706605-51706624 Msa0816910:CDS 55.0%
AGATTGCCAAGGCTATCGGC+TGG + chr5_3:51706616-51706635 Msa0816910:CDS 55.0%
GCAAGCCACATTGCGAGACA+CGG + chr5_3:51706638-51706657 Msa0816910:CDS 55.0%
ACATTGCGAGACACGGCTGA+GGG + chr5_3:51706645-51706664 Msa0816910:CDS 55.0%
! ACCACGCGGTTGATGCAATC+AGG + chr5_3:51706710-51706729 Msa0816910:exon 55.0%
ACCTGATTGCATCAACCGCG+TGG - chr5_3:51706714-51706733 None:intergenic 55.0%
GATGATCCCTGCAGCTGCAA+TGG + chr5_3:51706764-51706783 Msa0816910:three_prime_UTR 55.0%
TGATCCCTGCAGCTGCAATG+GGG + chr5_3:51706766-51706785 Msa0816910:three_prime_UTR 55.0%
GAATTCCCCATTGCAGCTGC+AGG - chr5_3:51706774-51706793 None:intergenic 55.0%
AATGGATCGGCGGAGGTGGA+TGG - chr5_3:51700433-51700452 None:intergenic 60.0%
GATGAATGGATCGGCGGAGG+TGG - chr5_3:51700437-51700456 None:intergenic 60.0%
GCTGGAATCGGTGGAGAGAG+GGG + chr5_3:51700864-51700883 Msa0816910:CDS 60.0%
!! GTTACCAGGCGCCGATTCCT+TGG + chr5_3:51700953-51700972 Msa0816910:intron 60.0%
TCGTCACGGCTTCTAGGCCA+AGG - chr5_3:51700973-51700992 None:intergenic 60.0%
TTGGCCTAGAAGCCGTGACG+AGG + chr5_3:51700972-51700991 Msa0816910:intron 60.0%
! ACCGGGAGCTTTAGTGCACC+AGG + chr5_3:51701167-51701186 Msa0816910:intron 60.0%
GCAAATGCTGCCACCATCGC+TGG - chr5_3:51702873-51702892 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr5_3:51703314-51703333 Msa0816910:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr5_3:51703341-51703360 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr5_3:51703342-51703361 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr5_3:51703346-51703365 Msa0816910:intron 60.0%
!! GGGCAGGAGGGTACTTTGTC+TGG + chr5_3:51703776-51703795 Msa0816910:CDS 60.0%
CTCAGCCGTGTCTCGCAATG+TGG - chr5_3:51706646-51706665 None:intergenic 60.0%
CACATTGCGAGACACGGCTG+AGG + chr5_3:51706644-51706663 Msa0816910:CDS 60.0%
GACGGCGACGGTGAAGAACG+CGG - chr5_3:51700467-51700486 None:intergenic 65.0%
TAGGCCAAGGAATCGGCGCC+TGG - chr5_3:51700960-51700979 None:intergenic 65.0%
TGAGCGTGGTGTCCCAGCGA+TGG + chr5_3:51702857-51702876 Msa0816910:CDS 65.0%
GCGCCAAGGTTGCCCCTCAA+AGG - chr5_3:51703194-51703213 None:intergenic 65.0%
AGGGGCAACCTTGGCGCAAC+TGG + chr5_3:51703197-51703216 Msa0816910:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr5_3:51703316-51703335 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr5_3:51703329-51703348 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr5_3:51703330-51703349 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr5_3:51703329-51703348 Msa0816910:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr5_3:51703330-51703349 Msa0816910:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr5_3:51703347-51703366 Msa0816910:intron 65.0%
ACCTGCAGGCTGCAGTCCCA+TGG + chr5_3:51705226-51705245 Msa0816910:intron 65.0%
TCCATGGGACTGCAGCCTGC+AGG - chr5_3:51705230-51705249 None:intergenic 65.0%
GGCTTGCCAGCCGATAGCCT+TGG - chr5_3:51706625-51706644 None:intergenic 65.0%
GGCGACGGTGAAGAACGCGG+CGG - chr5_3:51700464-51700483 None:intergenic 70.0%
GCGTGGTGTCCCAGCGATGG+TGG + chr5_3:51702860-51702879 Msa0816910:CDS 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr5_3:51703331-51703350 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr5_3:51703335-51703354 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr5_3:51703336-51703355 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 51700424 51707077 51700424 ID=Msa0816910;Name=Msa0816910
chr5_3 mRNA 51700424 51707077 51700424 ID=Msa0816910-mRNA-1;Parent=Msa0816910;Name=Msa0816910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.87|0.88|1|1|1|9|355|623
chr5_3 exon 51700424 51700936 51700424 ID=Msa0816910-mRNA-1:exon:15508;Parent=Msa0816910-mRNA-1
chr5_3 exon 51702468 51702617 51702468 ID=Msa0816910-mRNA-1:exon:15509;Parent=Msa0816910-mRNA-1
chr5_3 exon 51702702 51702972 51702702 ID=Msa0816910-mRNA-1:exon:15510;Parent=Msa0816910-mRNA-1
chr5_3 exon 51703740 51703850 51703740 ID=Msa0816910-mRNA-1:exon:15511;Parent=Msa0816910-mRNA-1
chr5_3 exon 51704332 51704491 51704332 ID=Msa0816910-mRNA-1:exon:15512;Parent=Msa0816910-mRNA-1
chr5_3 exon 51705429 51705686 51705429 ID=Msa0816910-mRNA-1:exon:15513;Parent=Msa0816910-mRNA-1
chr5_3 exon 51705783 51705905 51705783 ID=Msa0816910-mRNA-1:exon:15514;Parent=Msa0816910-mRNA-1
chr5_3 exon 51706018 51706095 51706018 ID=Msa0816910-mRNA-1:exon:15515;Parent=Msa0816910-mRNA-1
chr5_3 exon 51706515 51707077 51706515 ID=Msa0816910-mRNA-1:exon:15516;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51700424 51700936 51700424 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51702468 51702617 51702468 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51702702 51702972 51702702 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51703740 51703850 51703740 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51704332 51704491 51704332 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51705429 51705686 51705429 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51705783 51705905 51705783 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51706018 51706095 51706018 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 CDS 51706515 51706722 51706515 ID=Msa0816910-mRNA-1:cds;Parent=Msa0816910-mRNA-1
chr5_3 three_prime_UTR 51706723 51707077 51706723 ID=Msa0816910-mRNA-1:three_prime_utr;Parent=Msa0816910-mRNA-1
Gene Sequence

>Msa0816910

ATGAAACCATCCACCTCCGCCGATCCATTCATCAAAACCGCCGCGTTCTTCACCGTCGCCGTCACTTTCTTCTACCTCGGTAAACACTGGTCCAATCTCTCTCAACAACAACTCATTTTCTTTACCACAACAACAACAACCGATCAAATCTCCATTTCCCCCAATTTCAACAAATTCTTCAACATCTCCTCCATAATCAACCCTAACCAGACACCAGAAACCGTGAAAATTAAGAAATTAGGGGTTCTGAATGAGGATGGAACAATGTCTGATGAATTTGAGGTTGGGGAATTTGATCCGGATTTTGTGGATGAAGCACAAATTGATGATAAGGATAATTCAAATGATGAAGTGAAATTGAAGGTGAAGAAATTTGAATTTTGTAAGGGAAGTATGAGTGAGTATATACCTTGTTTGGATAATGTTAATGAGATCAGGAAGCTGGAATCGGTGGAGAGAGGGGAGAGATTTGAGAGGCATTGTCCAGTTGAGGAGAAACGATTGAATTGTTTGGTGTGGTACAGTAATGTTCCCCACACTCGTCTTGTGGAAGATAAAGGGGGTCAAAATTGGATTACAAGAGACAAGGATAAGTTCAAGTTTCCAGGAGGTGGCACCCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCCAAGATGGTTCTTGACATCACATTTGGTCAGAATATAAGAGTTGCTCTGGATGTTGGCTGTGGTGTAGCTAGTTTTGGTGCATACTTATTGTCAAGAAATGTCATCACAATGTCCGTTGCTCCAAAGGATGTTCATGAGAATCAGATCCAATTTGCTCTTGAGCGTGGTGTCCCAGCGATGGTGGCAGCATTTGCAACTAGACGTTTATTATATCCAAGTCAAGCTTTTGATTTGATACATTGTTCACGCTGCAGGATTAATTGGACTCGAGATGATGGTATTTTGCTGCTTGAAGCTAATAGGATGCTAAGGGCAGGAGGGTACTTTGTCTGGGCTGCCCAACCAGTTTATAAACATGAGCAAAATTTAGAAGAACAATGGGAAGAGATGATTAATCTTACTACTCGTCTTTGCTGGAAGTTTTTGAAAAAAGATGGGTATGTTGCAATATGGCAGAAACCCTTCGACAATAGCTGCTATCTAAACCGTGAGGCAGAAACTAAACCTCCACTCTGTGACCCAACTGAGGACCCAGACAATATCTGGTATGTTAATTTAAAAGCATGCATCTCTCAATTGCCTGAGAATGGATATGGAGCAAATCTTACCAAATGGCCTGCACGTTTGCAAACTTCACCTGATAGGCTTCAAAGCATAAAACTTGATGCTCTCTTATCCAGAAAAGAACTTTTTAAGGCCGAATCAAAATATTGGAATGAGGTAATAGCAAGTTATGTACGTGCTTACCATTGGAAGACGATGAGATTAAGAAATGTTATGGACATGAGAGCTGGTTTTGGCGGATTTGCAGCTGCATTGATAGACCAGAATCTTGACAGCTGGGTTATGAATGTTGTTCCTGTTAGTGGCTCAAACACCTTGCCTGTGATATATGACCGTGGGCTGATCGGAGTTATGCATGATTGGTGTGAACCATTTGACACTTATCCAAGAACCTATGATCTTCTGCATGCTTCATACCTGCTTTCTGTTGAGAAGAAAAGATGCAATGTCTCATCAATCATGCTTGAGATGGATCGGATACTTAGACCTGGTGGACATGTATACATCCGAGATTCTCTTTCTATCATGGACGAGCTTGTGGAGATTGCCAAGGCTATCGGCTGGCAAGCCACATTGCGAGACACGGCTGAGGGTCCACATGCAAGTTATAGGATCTTGGCTTGTGATAAGCTCATACCACGCGGTTGA
Protein sequence

>Msa0816910

MKPSTSADPFIKTAAFFTVAVTFFYLGKHWSNLSQQQLIFFTTTTTTDQISISPNFNKFFNISSIINPNQTPETVKIKKLGVLNEDGTMSDEFEVGEFDPDFVDEAQIDDKDNSNDEVKLKVKKFEFCKGSMSEYIPCLDNVNEIRKLESVERGERFERHCPVEEKRLNCLVWYSNVPHTRLVEDKGGQNWITRDKDKFKFPGGGTQFIHGADQYLDHISKMVLDITFGQNIRVALDVGCGVASFGAYLLSRNVITMSVAPKDVHENQIQFALERGVPAMVAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEANRMLRAGGYFVWAAQPVYKHEQNLEEQWEEMINLTTRLCWKFLKKDGYVAIWQKPFDNSCYLNREAETKPPLCDPTEDPDNIWYVNLKACISQLPENGYGANLTKWPARLQTSPDRLQSIKLDALLSRKELFKAESKYWNEVIASYVRAYHWKTMRLRNVMDMRAGFGGFAAALIDQNLDSWVMNVVPVSGSNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHASYLLSVEKKRCNVSSIMLEMDRILRPGGHVYIRDSLSIMDELVEIAKAIGWQATLRDTAEGPHASYRILACDKLIPRG*