AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422420 MtrunA17_Chr2g0331991 98.875 711 7 1 1 710 1 711 0.0 1434
Msa1422420 MtrunA17_Chr4g0004211 59.322 708 204 13 2 707 32 657 0.0 791
Msa1422420 MtrunA17_Chr4g0034861 60.234 684 210 12 31 710 9 634 0.0 740
Msa1422420 MtrunA17_Chr3g0141921 31.026 419 201 12 298 708 123 461 7.46e-38 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422420 AT3G15940.2 62.064 688 247 7 32 708 12 696 0.0 808
Msa1422420 AT3G15940.1 62.064 688 247 7 32 708 12 696 0.0 808
Msa1422420 AT1G52420.1 60.347 691 242 12 24 708 5 669 0.0 800
Msa1422420 AT1G19710.1 31.296 409 190 15 305 703 134 461 5.67e-36 142
Msa1422420 AT1G75420.2 42.384 151 83 3 553 703 219 365 1.15e-22 101
Msa1422420 AT1G75420.3 42.384 151 83 3 553 703 278 424 1.29e-22 102
Msa1422420 AT1G75420.1 42.384 151 83 3 553 703 304 450 1.68e-22 101

Find 180 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTCTCGGAACGGATTC+TGG 0.131653 tig0025379:-24024 Msa1422420:CDS
GATCTCCTGCTCTTCTTCTT+TGG 0.146647 tig0025379:+27586 None:intergenic
AAGCAATAGCTGGCCCTTTC+CGG 0.189848 tig0025379:+25828 None:intergenic
CTATTGGTTTGAGGAATTTC+TGG 0.194960 tig0025379:+27490 None:intergenic
ACGACCTACCTGAGAGTTTA+TGG 0.200248 tig0025379:+25318 None:intergenic
ATAATCCACCTTGTTACTTT+TGG 0.226187 tig0025379:+25453 None:intergenic
AAGGAATGTGTATTTCTAAA+AGG 0.229381 tig0025379:-28158 Msa1422420:five_prime_UTR
ATCTCCTGCTCTTCTTCTTT+GGG 0.236327 tig0025379:+27587 None:intergenic
TAGCGAAACTATCTTCATTA+AGG 0.246450 tig0025379:-28044 Msa1422420:CDS
CTCAACAGAAGATAGGATTT+TGG 0.248236 tig0025379:-27437 Msa1422420:CDS
CAGCAATAGAGGTGAATTTC+AGG 0.300352 tig0025379:-28073 Msa1422420:CDS
GTTCAAGATTGAAGCATTGT+AGG 0.311791 tig0025379:-28205 Msa1422420:five_prime_UTR
GGGACTTTGCACGCCTTGTT+TGG 0.322335 tig0025379:-27372 Msa1422420:CDS
AGCAATAGCTGGCCCTTTCC+GGG 0.327800 tig0025379:+25829 None:intergenic
CCATTTGCTTCCTTGCCAAC+TGG 0.333918 tig0025379:+23893 None:intergenic
AATGAGACGGTTAGAAATAA+AGG 0.341557 tig0025379:-27688 Msa1422420:CDS
GCATCTACGCCGGTATTTCT+TGG 0.344521 tig0025379:+27766 None:intergenic
GGCTGCTTCTAATTACCCTC+TGG 0.345486 tig0025379:-27867 Msa1422420:CDS
AAAGTTCTCATTGGTTCTGT+TGG 0.360825 tig0025379:-25478 Msa1422420:CDS
TCCACTCTCAATGTTGGAAT+TGG 0.362265 tig0025379:-27302 Msa1422420:CDS
AGCAATGGCATTTGGTCTTC+CGG 0.371847 tig0025379:-24668 Msa1422420:intron
ACAGACAAAGGAACAGTTGC+AGG 0.371888 tig0025379:+26018 None:intergenic
AGGAAAGAAGGAAGAACTTT+TGG 0.372630 tig0025379:-27928 Msa1422420:CDS
GGGGATAGAAGGCAGGAAAA+AGG 0.376967 tig0025379:-23872 Msa1422420:CDS
GACGGAGTGTTAAGTGTAGA+AGG 0.388857 tig0025379:+25964 None:intergenic
GGATTACTCGTCGGTCCATT+TGG 0.392207 tig0025379:-27460 Msa1422420:CDS
TTTGTCTGTTAATGATGAAC+TGG 0.392335 tig0025379:-26004 Msa1422420:CDS
AGAATCGGTCCGAAAAGAAA+TGG 0.395205 tig0025379:-25899 Msa1422420:CDS
TGGAGTCCTCAGAAACGTTC+CGG 0.397254 tig0025379:-27412 Msa1422420:CDS
TTCCCTGCTGCACGTCCAAT+TGG 0.397411 tig0025379:+23955 None:intergenic
ATTACCCTCTGGGCTTATCT+TGG 0.397833 tig0025379:-27856 Msa1422420:CDS
TTGTTCTTAATTTCCACAAT+TGG 0.400041 tig0025379:+27532 None:intergenic
CAGGGACTTGGAGAGACATT+TGG 0.403494 tig0025379:-24706 Msa1422420:CDS
GAGGCAACCTGTGTTGTGGC+TGG 0.406876 tig0025379:+25367 None:intergenic
TGTTGAGGAAAGGAATATAA+TGG 0.407641 tig0025379:-28103 Msa1422420:CDS
AGAGATTGTGGTTGCTGAGT+TGG 0.409917 tig0025379:+28701 None:intergenic
ATCTTATGGGAGCAGGTTCT+CGG 0.410753 tig0025379:-24036 Msa1422420:intron
ACTATAGAAGCAATGGCATT+TGG 0.411383 tig0025379:-24676 Msa1422420:CDS
CATCCAATTGGACGTGCAGC+AGG 0.414855 tig0025379:-23958 Msa1422420:CDS
CCAGTTGGCAAGGAAGCAAA+TGG 0.419877 tig0025379:-23893 Msa1422420:CDS
ATAGTTGAGAACAATGTTAC+AGG 0.420330 tig0025379:-23988 Msa1422420:CDS
ACAGGTCTTCTTCATCCAAT+TGG 0.421060 tig0025379:-23970 Msa1422420:CDS
GAGTAATCCATACGTACTAT+TGG 0.421436 tig0025379:+27474 None:intergenic
AGAAACATGGTTCTAACTCT+TGG 0.421622 tig0025379:+28782 None:intergenic
TTGTTACCATTGTTGAAAGA+TGG 0.422929 tig0025379:-25685 Msa1422420:CDS
AGAGCTAGCTAGTCACAAAT+TGG 0.429410 tig0025379:+23684 None:intergenic
AAGGCTGATCTTGTAATTGC+TGG 0.429776 tig0025379:-27142 Msa1422420:CDS
AATTTGTTGAGGTTATTGTT+AGG 0.429920 tig0025379:-23813 Msa1422420:CDS
CATTTGGCTCAACAGAAGAT+AGG 0.430286 tig0025379:-27444 Msa1422420:CDS
CTATCTTCTGTTGAGCCAAA+TGG 0.432141 tig0025379:+27445 None:intergenic
AGGTTCTCGGAACGGATTCT+GGG 0.432623 tig0025379:-24023 Msa1422420:CDS
CCTGCTTAAAGAATTGTTTG+AGG 0.438712 tig0025379:+25642 None:intergenic
CAATCTCTCAAAGTTCTCAT+TGG 0.442203 tig0025379:-25487 Msa1422420:CDS
CCATGACCCACCAAGCAACT+TGG 0.444595 tig0025379:+26175 None:intergenic
AAAGTTCTTCCTTCTTTCCT+CGG 0.444755 tig0025379:+27931 None:intergenic
AGGAAGCAAATGGGGATAGA+AGG 0.445303 tig0025379:-23883 Msa1422420:CDS
AAATGTAGCCTTGGCAAAGA+AGG 0.452522 tig0025379:-27647 Msa1422420:CDS
GGAGTCCTCAGAAACGTTCC+GGG 0.453244 tig0025379:-27411 Msa1422420:CDS
CCTCAAACAATTCTTTAAGC+AGG 0.454282 tig0025379:-25642 Msa1422420:intron
TTCCACGAGCTTTCCATGAC+CGG 0.456509 tig0025379:-27328 Msa1422420:CDS
TTTCAGCTGTTGCACTTAGC+AGG 0.456577 tig0025379:-27249 Msa1422420:CDS
GCTGCTTCTAATTACCCTCT+GGG 0.460105 tig0025379:-27866 Msa1422420:CDS
AGTCGAACGCCGAGGAAAGA+AGG 0.460307 tig0025379:-27940 Msa1422420:CDS
ATCAAATCACGGCGAAGACT+CGG 0.460731 tig0025379:+27739 None:intergenic
AAGCTTCAAAACTGCAATGA+AGG 0.464293 tig0025379:-27161 Msa1422420:CDS
GGCAACCTGTGTTGTGGCTG+GGG 0.469028 tig0025379:+25369 None:intergenic
CAAGCCCAAAGAAGAAGAGC+AGG 0.470250 tig0025379:-27591 Msa1422420:CDS
CAAAATGGTGAACAGGGACT+TGG 0.473978 tig0025379:-24718 Msa1422420:intron
AGGAATGTGTATTTCTAAAA+GGG 0.476882 tig0025379:-28157 Msa1422420:five_prime_UTR
GTTAGAAATAAAGGAGGGAT+TGG 0.478873 tig0025379:-27679 Msa1422420:CDS
AACGTTCCGGGACATGTAAT+AGG 0.479019 tig0025379:-27399 Msa1422420:CDS
AAGGCAGTTGTTGCGAGAAT+CGG 0.482088 tig0025379:-25914 Msa1422420:CDS
AGGCAACCTGTGTTGTGGCT+GGG 0.485271 tig0025379:+25368 None:intergenic
CGGGTGCGAGCCAAGTTGCT+TGG 0.485763 tig0025379:-26185 Msa1422420:CDS
CCAAGTTGCTTGGTGGGTCA+TGG 0.487031 tig0025379:-26175 Msa1422420:CDS
CCCCTTCCTATTACATGTCC+CGG 0.487747 tig0025379:+27393 None:intergenic
CTGATAAAATGATTGAGAAA+AGG 0.490392 tig0025379:-25933 Msa1422420:CDS
GAACAATGATATAGAAGAGC+AGG 0.492309 tig0025379:-27515 Msa1422420:CDS
TGCGAGCCAAGTTGCTTGGT+GGG 0.493421 tig0025379:-26181 Msa1422420:CDS
AGTAGCATCAACCCCGGAAA+GGG 0.494447 tig0025379:-25841 Msa1422420:CDS
AATCTAAACAATGGCAAAAG+TGG 0.495011 tig0025379:-26074 Msa1422420:CDS
GTGCGAGCCAAGTTGCTTGG+TGG 0.495804 tig0025379:-26182 Msa1422420:CDS
ATCACTTTCCTTCTTTGCCA+AGG 0.496573 tig0025379:+27639 None:intergenic
TACGCCGGTATTTCTTGGCC+CGG 0.496951 tig0025379:+27771 None:intergenic
GAATCGGTCCGAAAAGAAAT+GGG 0.498856 tig0025379:-25898 Msa1422420:CDS
TGTTTATGCCATAAACTCTC+AGG 0.500207 tig0025379:-25326 Msa1422420:intron
TCACAGAAGGAAGCAATTGT+TGG 0.502273 tig0025379:-25533 Msa1422420:intron
TAGAACAATAAATGTAGCCT+TGG 0.503789 tig0025379:-27656 Msa1422420:CDS
GAGTACTTCGACCGTTCAAA+GGG 0.504167 tig0025379:-26141 Msa1422420:CDS
CCATACGTACTATTGGTTTG+AGG 0.507465 tig0025379:+27481 None:intergenic
ATGGAGGAAAGCAGCAATAG+AGG 0.508277 tig0025379:-28084 Msa1422420:CDS
CGGAGCTCCACTCTCAATGT+TGG 0.508341 tig0025379:-27308 Msa1422420:CDS
CAGTTGGCAAGGAAGCAAAT+GGG 0.510086 tig0025379:-23892 Msa1422420:CDS
CTTATCAATATGTGCCCACC+TGG 0.518074 tig0025379:+27819 None:intergenic
TGAGAGTGGAGCTCCGGTCA+TGG 0.520701 tig0025379:+27315 None:intergenic
GGAACCGGGCCAAGAAATAC+CGG 0.521618 tig0025379:-27775 Msa1422420:CDS
GAAACTATCTTCATTAAGGT+CGG 0.521851 tig0025379:-28040 Msa1422420:CDS
GTGGGCACATATTGATAAGA+AGG 0.524950 tig0025379:-27815 Msa1422420:CDS
AGAGTACTTCGACCGTTCAA+AGG 0.525221 tig0025379:-26142 Msa1422420:CDS
GCTTTCTAGAAGACGAATCA+AGG 0.531246 tig0025379:-27206 Msa1422420:CDS
GATGAACTGGCATTTGTAGC+CGG 0.532193 tig0025379:-25991 Msa1422420:CDS
CCTCAAACCAATAGTACGTA+TGG 0.533615 tig0025379:-27481 Msa1422420:CDS
AGATGGCAAAGTAGCTCTGA+AGG 0.536743 tig0025379:-25668 Msa1422420:CDS
AACGAAGGAGAATTATTTCG+CGG 0.538604 tig0025379:+27979 None:intergenic
AACGGTCGAAGTACTCTCTA+CGG 0.540457 tig0025379:+26148 None:intergenic
AGCTGTTGCACTTAGCAGGA+AGG 0.547033 tig0025379:-27245 Msa1422420:CDS
CAACATTGAGAGTGGAGCTC+CGG 0.548238 tig0025379:+27309 None:intergenic
CTGATTCAAGAAGCAATAGC+TGG 0.552842 tig0025379:+25818 None:intergenic
AGCAAATGGGGATAGAAGGC+AGG 0.552878 tig0025379:-23879 Msa1422420:CDS
AAACTATCTTCATTAAGGTC+GGG 0.554864 tig0025379:-28039 Msa1422420:CDS
GTTCAGCTGTATGTGCATCA+TGG 0.555139 tig0025379:-27120 Msa1422420:CDS
GCCAATTCCAACATTGAGAG+TGG 0.556981 tig0025379:+27301 None:intergenic
GGAGCAATCGTGTGTTGTTG+TGG 0.563046 tig0025379:-27888 Msa1422420:CDS
GCTGTTGCACTTAGCAGGAA+GGG 0.563411 tig0025379:-27244 Msa1422420:CDS
TCCGGGACATGTAATAGGAA+GGG 0.564524 tig0025379:-27394 Msa1422420:CDS
CTTGCACAGAGTAAAGATGT+TGG 0.568045 tig0025379:-26115 Msa1422420:CDS
GAATCATGATTGTTGAGGAA+AGG 0.568364 tig0025379:-28113 Msa1422420:exon
CCGGGACATGTAATAGGAAG+GGG 0.570061 tig0025379:-27393 Msa1422420:CDS
TTCAGCACTGTGAGAGATTG+TGG 0.571822 tig0025379:+28689 None:intergenic
TTCCGGGACATGTAATAGGA+AGG 0.571893 tig0025379:-27395 Msa1422420:CDS
TAAATCTTCTCGACCAAACA+AGG 0.573246 tig0025379:+27359 None:intergenic
GCAACTTGGCTCGCACCCGC+CGG 0.574124 tig0025379:+26189 None:intergenic
AAGTAGCATCAACCCCGGAA+AGG 0.577074 tig0025379:-25842 Msa1422420:CDS
GGTTCTCGGAACGGATTCTG+GGG 0.577256 tig0025379:-24022 Msa1422420:CDS
CTATCTTCATTAAGGTCGGG+TGG 0.578139 tig0025379:-28036 Msa1422420:CDS
ACTTGGAGAGACATTTGGAC+GGG 0.580802 tig0025379:-24701 Msa1422420:CDS
GTTAAGTGTAGAAGGAATGC+CGG 0.582910 tig0025379:+25972 None:intergenic
GGGCTTGCTTTACGACGAGA+AGG 0.583830 tig0025379:+27607 None:intergenic
CATGTCCCGGAACGTTTCTG+AGG 0.586620 tig0025379:+27406 None:intergenic
CTCCGGTCATGGAAAGCTCG+TGG 0.587117 tig0025379:+27326 None:intergenic
ATGGGAGCAGGTTCTCGGAA+CGG 0.587903 tig0025379:-24031 Msa1422420:intron
TAAAGGAAGGCTTGTCTACA+CGG 0.590742 tig0025379:-25732 Msa1422420:CDS
CTTGTCTGTTAATAATGAGA+CGG 0.594500 tig0025379:-27701 Msa1422420:CDS
ATTGAATGATAGCACGTGCT+TGG 0.594648 tig0025379:+28826 None:intergenic
GAGACGGTTAGAAATAAAGG+AGG 0.595028 tig0025379:-27685 Msa1422420:CDS
GCTGTATGTGCATCATGGAT+TGG 0.595255 tig0025379:-27115 Msa1422420:intron
ACTTTGCCATCTTTCAACAA+TGG 0.596363 tig0025379:+25679 None:intergenic
TGGTAAGAAGAAACCAATTG+TGG 0.596946 tig0025379:-27545 Msa1422420:CDS
AAGAGCAGGAGATCTTCGAA+AGG 0.599991 tig0025379:-27577 Msa1422420:CDS
CCTCTGATAAAAGAAAATAG+AGG 0.600162 tig0025379:+23661 None:intergenic
ATCTGCTGCAGAGTATAATG+AGG 0.601212 tig0025379:+25348 None:intergenic
AAGTGCAACAGCTGAAACAG+TGG 0.603037 tig0025379:+27255 None:intergenic
CTGAATCACAATCTAAACAA+TGG 0.603498 tig0025379:-26083 Msa1422420:CDS
AAGACGAATCAAGGTGCTTG+AGG 0.605518 tig0025379:-27197 Msa1422420:CDS
AAATTATCAAATATAAAGGA+AGG 0.606570 tig0025379:-25745 Msa1422420:CDS
GCAATAGCTGGCCCTTTCCG+GGG 0.611467 tig0025379:+25830 None:intergenic
CATGTATAAGAAATTTGTTG+AGG 0.611722 tig0025379:-23824 Msa1422420:CDS
GTTGCACTTAGCAGGAAGGG+TGG 0.613077 tig0025379:-27241 Msa1422420:CDS
GAGTTTAGTCTTCGAAACGA+AGG 0.614670 tig0025379:+27964 None:intergenic
GACTTGGAGAGACATTTGGA+CGG 0.618285 tig0025379:-24702 Msa1422420:CDS
AGTTCATCATTAACAGACAA+AGG 0.620196 tig0025379:+26006 None:intergenic
ACGGGTGACTATAGAAGCAA+TGG 0.624266 tig0025379:-24683 Msa1422420:CDS
AATACCAAGATAAGCCCAGA+GGG 0.624408 tig0025379:+27852 None:intergenic
TGTGCAAGACACCCTTTGAA+CGG 0.624594 tig0025379:+26130 None:intergenic
ATACATAATGTAGTGACTGC+TGG 0.625005 tig0025379:-23718 Msa1422420:three_prime_UTR
AGTTGGCAAGGAAGCAAATG+GGG 0.626977 tig0025379:-23891 Msa1422420:CDS
CGTCTCATTATTAACAGACA+AGG 0.627188 tig0025379:+27702 None:intergenic
AATACAGAAGATTCTGTGCA+AGG 0.628515 tig0025379:+23926 None:intergenic
AAAGAAGGAAAGTGATGATG+AGG 0.629203 tig0025379:-27632 Msa1422420:CDS
ATCCAATTGGACGTGCAGCA+GGG 0.637876 tig0025379:-23957 Msa1422420:CDS
TGAGGAAAGGAATATAATGG+AGG 0.639776 tig0025379:-28100 Msa1422420:CDS
GTGGACCCCAGCCACAACAC+AGG 0.642970 tig0025379:-25374 Msa1422420:CDS
AGACGGTTAGAAATAAAGGA+GGG 0.643625 tig0025379:-27684 Msa1422420:CDS
CATCACTAGCAATCAAATCA+CGG 0.645910 tig0025379:+27728 None:intergenic
ACAAAGGAACAGTTGCAGGT+TGG 0.651753 tig0025379:+26022 None:intergenic
TGTTGGATCCAAAAGTAACA+AGG 0.656667 tig0025379:-25461 Msa1422420:CDS
GCTGTTCTAAGAAACTGAGA+AGG 0.659200 tig0025379:+25422 None:intergenic
TAATGAGGCAACCTGTGTTG+TGG 0.663004 tig0025379:+25363 None:intergenic
GGCACATATTGATAAGAAGG+AGG 0.663174 tig0025379:-27812 Msa1422420:CDS
TCTTCGAAAGGTAAAGCTCG+TGG 0.669801 tig0025379:-27565 Msa1422420:CDS
TCTCTAAGTAGCATCAACCC+CGG 0.669974 tig0025379:-25847 Msa1422420:CDS
ATGAGAGTGAGAGAGAAACA+TGG 0.676193 tig0025379:+28769 None:intergenic
GTTCTCGGAACGGATTCTGG+GGG 0.681613 tig0025379:-24021 Msa1422420:CDS
AGTACGTATGGATTACTCGT+CGG 0.683292 tig0025379:-27469 Msa1422420:CDS
ACTCGGATCAGCATCTACGC+CGG 0.684071 tig0025379:+27756 None:intergenic
TGGATCCAAAAGTAACAAGG+TGG 0.684946 tig0025379:-25458 Msa1422420:CDS
TAAACTCTAGTCGAACGCCG+AGG 0.690673 tig0025379:-27948 Msa1422420:CDS
CGGGACATGTAATAGGAAGG+GGG 0.712818 tig0025379:-27392 Msa1422420:CDS
TATATGAATCATGATTGTTG+AGG 0.718092 tig0025379:-28118 Msa1422420:exon
AAATACCAAGATAAGCCCAG+AGG 0.740468 tig0025379:+27851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAATTTAATATGCTT+AGG - tig0025379:25625-25644 Msa1422420:intron 10.0%
!! GAAAAAATTATCAAATATAA+AGG - tig0025379:26704-26723 Msa1422420:intron 10.0%
!!! TTATTTTACTTTTTCTAATT+TGG - tig0025379:27405-27424 Msa1422420:CDS 10.0%
!!! TTGTTTTTTTAATTACTTGA+AGG - tig0025379:24183-24202 Msa1422420:intron 15.0%
!!! TATTTTAATATTTCCTTTTG+TGG + tig0025379:25612-25631 None:intergenic 15.0%
!! ATTTACAAGAGAAATATAAT+CGG + tig0025379:26098-26117 None:intergenic 15.0%
!! AAATTATCAAATATAAAGGA+AGG - tig0025379:26708-26727 Msa1422420:intron 15.0%
!! GAAGTAAATTATATAACTTA+TGG - tig0025379:26847-26866 Msa1422420:intron 15.0%
!!! ATGTAATAATGCTTTTATAT+AGG - tig0025379:27215-27234 Msa1422420:CDS 15.0%
!! AACAAAATCTATATATTTAG+AGG + tig0025379:28224-28243 None:intergenic 15.0%
!! TTCAATTGAAAAAGAAAAAA+AGG + tig0025379:28701-28720 None:intergenic 15.0%
!!! TTTTAATTACTTGAAGGATT+CGG - tig0025379:24189-24208 Msa1422420:intron 20.0%
!!! GACTATTTTTTAGTGAATTT+GGG - tig0025379:24270-24289 Msa1422420:intron 20.0%
!!! ACTATTTTTTAGTGAATTTG+GGG - tig0025379:24271-24290 Msa1422420:intron 20.0%
!!! AGTTTTAAATCAACATTATC+AGG - tig0025379:24441-24460 Msa1422420:intron 20.0%
!! TTCAATGTTGCATATTAATT+TGG + tig0025379:25524-25543 None:intergenic 20.0%
!! TAATGGTTTGAATGATTAAA+AGG + tig0025379:25849-25868 None:intergenic 20.0%
!! TAATTCTTTCCTTTATTGTT+TGG - tig0025379:26015-26034 Msa1422420:CDS 20.0%
!!! AATCATTTTATCAGTACTAA+AGG + tig0025379:26514-26533 None:intergenic 20.0%
!! TATTACATATATCGATATGA+AGG + tig0025379:27203-27222 None:intergenic 20.0%
!!! TCATTTAAAATATCTTTGCT+TGG + tig0025379:27314-27333 None:intergenic 20.0%
! CTCAATCTTAGATAAAGAAA+TGG + tig0025379:23847-23866 None:intergenic 25.0%
! TTTAGCAAGTAAATTCATGT+GGG + tig0025379:24161-24180 None:intergenic 25.0%
!!! GGACTATTTTTTAGTGAATT+TGG - tig0025379:24269-24288 Msa1422420:intron 25.0%
!! AAGGAATGTGTATTTCTAAA+AGG - tig0025379:24295-24314 Msa1422420:intron 25.0%
!! AGGAATGTGTATTTCTAAAA+GGG - tig0025379:24296-24315 Msa1422420:intron 25.0%
! TATATGAATCATGATTGTTG+AGG - tig0025379:24335-24354 Msa1422420:intron 25.0%
! TTGTTCTTAATTTCCACAAT+TGG + tig0025379:24924-24943 None:intergenic 25.0%
! TTGTTACATTTCATTATGCA+TGG - tig0025379:25372-25391 Msa1422420:CDS 25.0%
! GTTTGAATGATTAAAAGGTT+AGG + tig0025379:25844-25863 None:intergenic 25.0%
! TTAAACTCATTCGTTTCTAA+TGG + tig0025379:25866-25885 None:intergenic 25.0%
! TAGAACTAGAAAATGGTATA+AGG + tig0025379:25927-25946 None:intergenic 25.0%
! TAAAGGTTAGAACTAGAAAA+TGG + tig0025379:25934-25953 None:intergenic 25.0%
! TCTAACCTTTATATATATCG+TGG - tig0025379:25943-25962 Msa1422420:CDS 25.0%
! ATCTACCACGATATATATAA+AGG + tig0025379:25951-25970 None:intergenic 25.0%
! TTTATTAAGACATGTAGAAG+AGG + tig0025379:26197-26216 None:intergenic 25.0%
! AAACGTTCAATATATTGTTC+TGG + tig0025379:26243-26262 None:intergenic 25.0%
!! ACAATATATTGAACGTTTTC+CGG - tig0025379:26245-26264 Msa1422420:intron 25.0%
!! ATTTTATCAGTACTAAAGGA+CGG + tig0025379:26510-26529 None:intergenic 25.0%
! CTGATAAAATGATTGAGAAA+AGG - tig0025379:26520-26539 Msa1422420:intron 25.0%
!!! AAAACTGATTTTGAAGTGTT+TGG + tig0025379:27059-27078 None:intergenic 25.0%
!! GTATTCTAAAAAAAGAACCA+AGG + tig0025379:27468-27487 None:intergenic 25.0%
! TCAGTATTCTTTATCAGTAA+AGG - tig0025379:27504-27523 Msa1422420:CDS 25.0%
! AGTAAAGGATAAGATTTACT+GGG - tig0025379:27519-27538 Msa1422420:CDS 25.0%
!!! ATAGTATTGAATGGAAGTTT+TGG - tig0025379:27562-27581 Msa1422420:CDS 25.0%
!!! ATAGTAATAGCTCTAAATGT+AGG + tig0025379:27671-27690 None:intergenic 25.0%
! ACAATAATCAAAAGGATCAA+AGG + tig0025379:28124-28143 None:intergenic 25.0%
! CTTCAGTAACAATAATCAAA+AGG + tig0025379:28132-28151 None:intergenic 25.0%
!!! TTGTTCTAAAACTAGGAAAA+AGG - tig0025379:28264-28283 Msa1422420:intron 25.0%
! TAATTTAGTGCCATAAATCT+AGG + tig0025379:28292-28311 None:intergenic 25.0%
! TTGTGTTCCAATTAATCTTA+TGG - tig0025379:28403-28422 Msa1422420:intron 25.0%
! TGTGTTCCAATTAATCTTAT+GGG - tig0025379:28404-28423 Msa1422420:intron 25.0%
!!! CATGTATAAGAAATTTGTTG+AGG - tig0025379:28629-28648 Msa1422420:intron 25.0%
!!! AATTTGTTGAGGTTATTGTT+AGG - tig0025379:28640-28659 Msa1422420:intron 25.0%
! AAAAAGGAATGATTATTGCA+GGG + tig0025379:28685-28704 None:intergenic 25.0%
! AAAAAAGGAATGATTATTGC+AGG + tig0025379:28686-28705 None:intergenic 25.0%
! TTGCATGTTCTTTTACTACT+TGG - tig0025379:23914-23933 Msa1422420:CDS 30.0%
TTTAGCAAGTTAATCCATGT+GGG + tig0025379:24072-24091 None:intergenic 30.0%
ATTTAGCAAGTTAATCCATG+TGG + tig0025379:24073-24092 None:intergenic 30.0%
CTTTAGCAAGTAAATTCATG+TGG + tig0025379:24162-24181 None:intergenic 30.0%
!! TTTTTAGTGAATTTGGGGAA+AGG - tig0025379:24276-24295 Msa1422420:intron 30.0%
TGTTGAGGAAAGGAATATAA+TGG - tig0025379:24350-24369 Msa1422420:intron 30.0%
TAGCGAAACTATCTTCATTA+AGG - tig0025379:24409-24428 Msa1422420:intron 30.0%
GAAACTATCTTCATTAAGGT+CGG - tig0025379:24413-24432 Msa1422420:intron 30.0%
AAACTATCTTCATTAAGGTC+GGG - tig0025379:24414-24433 Msa1422420:intron 30.0%
!!! TTGGTATTTTTTTTCAGTCC+AGG - tig0025379:24616-24635 Msa1422420:intron 30.0%
!!! TATTTTTTTTCAGTCCAGGT+GGG - tig0025379:24620-24639 Msa1422420:intron 30.0%
CTTGTCTGTTAATAATGAGA+CGG - tig0025379:24752-24771 Msa1422420:intron 30.0%
AATGAGACGGTTAGAAATAA+AGG - tig0025379:24765-24784 Msa1422420:intron 30.0%
TAGAACAATAAATGTAGCCT+TGG - tig0025379:24797-24816 Msa1422420:intron 30.0%
TAAGATACAAAAGTAGAGGA+AGG + tig0025379:25469-25488 None:intergenic 30.0%
! AGTCTAAGATACAAAAGTAG+AGG + tig0025379:25473-25492 None:intergenic 30.0%
!!! TAAATGCTTTTTCAACCTCA+CGG - tig0025379:25496-25515 Msa1422420:CDS 30.0%
AACTAACAAGCATATCTTTC+TGG + tig0025379:25566-25585 None:intergenic 30.0%
! ATAGAGCTAGTATGATAATG+TGG + tig0025379:25700-25719 None:intergenic 30.0%
!! CATACTAGCTCTATAACTAT+TGG - tig0025379:25706-25725 Msa1422420:CDS 30.0%
!! AGCTCTATAACTATTGGTTT+AGG - tig0025379:25712-25731 Msa1422420:CDS 30.0%
GACACAATACCAAACAATAA+AGG + tig0025379:26027-26046 None:intergenic 30.0%
! TGATTTTGCTTCTAATACAG+AGG - tig0025379:26068-26087 Msa1422420:CDS 30.0%
CTGAATCACAATCTAAACAA+TGG - tig0025379:26370-26389 Msa1422420:intron 30.0%
AATCTAAACAATGGCAAAAG+TGG - tig0025379:26379-26398 Msa1422420:intron 30.0%
AGTTCATCATTAACAGACAA+AGG + tig0025379:26450-26469 None:intergenic 30.0%
TTTGTCTGTTAATGATGAAC+TGG - tig0025379:26449-26468 Msa1422420:intron 30.0%
! CAGTTAATCCCATTTCTTTT+CGG + tig0025379:26566-26585 None:intergenic 30.0%
TTGTTACCATTGTTGAAAGA+TGG - tig0025379:26768-26787 Msa1422420:intron 30.0%
TTAAGCAGGTTACATTAAAC+TGG - tig0025379:26825-26844 Msa1422420:intron 30.0%
!!! ATAATCCACCTTGTTACTTT+TGG + tig0025379:27003-27022 None:intergenic 30.0%
! ACACTTCAAAATCAGTTTTG+TGG - tig0025379:27060-27079 Msa1422420:intron 30.0%
GGATGCATATACTCATAATT+AGG + tig0025379:27254-27273 None:intergenic 30.0%
! AAGACTTGAAGTTTTTACCT+TGG - tig0025379:27448-27467 Msa1422420:CDS 30.0%
TACTGAATATACAGACAAGA+AGG + tig0025379:27490-27509 None:intergenic 30.0%
CAGTAAAGGATAAGATTTAC+TGG - tig0025379:27518-27537 Msa1422420:CDS 30.0%
TACGAAAATATCCTCCAAAA+TGG - tig0025379:27694-27713 Msa1422420:CDS 30.0%
ACGAAAATATCCTCCAAAAT+GGG - tig0025379:27695-27714 Msa1422420:CDS 30.0%
ACTGTTGCTAACTAACAAAA+TGG - tig0025379:27720-27739 Msa1422420:CDS 30.0%
TAACTAACAAAATGGTGAAC+AGG - tig0025379:27728-27747 Msa1422420:CDS 30.0%
AACTAACAAAATGGTGAACA+GGG - tig0025379:27729-27748 Msa1422420:CDS 30.0%
ATTTGCATGAGATAAACAAG+AGG + tig0025379:27831-27850 None:intergenic 30.0%
!! TTTTATTTGAGTGTCACACT+TGG - tig0025379:27856-27875 Msa1422420:CDS 30.0%
TTTATTTGAGTGTCACACTT+GGG - tig0025379:27857-27876 Msa1422420:CDS 30.0%
! ACTGTTTTCGTAAGCTATAT+TGG - tig0025379:27975-27994 Msa1422420:CDS 30.0%
! TTGTGGTAGTAAGTTGAAAA+CGG - tig0025379:28003-28022 Msa1422420:CDS 30.0%
!! TTGTCAGTTGTTCTAAAACT+AGG - tig0025379:28257-28276 Msa1422420:intron 30.0%
TCACTCATTCATTTACATTC+AGG + tig0025379:28377-28396 None:intergenic 30.0%
ATAGTTGAGAACAATGTTAC+AGG - tig0025379:28465-28484 Msa1422420:intron 30.0%
GTATTTGCTTAAAAACCAGT+TGG - tig0025379:28545-28564 Msa1422420:intron 30.0%
CCTCTGATAAAAGAAAATAG+AGG + tig0025379:28795-28814 None:intergenic 30.0%
! CCTCTATTTTCTTTTATCAG+AGG - tig0025379:28792-28811 Msa1422420:five_prime_UTR 30.0%
GGGAAAAACTATTGATACTT+TGG + tig0025379:28899-28918 None:intergenic 30.0%
!! AGAAACATGGTTCTAACTCT+TGG + tig0025379:23674-23693 None:intergenic 35.0%
TGTTAAGAATGATACCCACA+TGG - tig0025379:24055-24074 Msa1422420:intron 35.0%
!! GTTCAAGATTGAAGCATTGT+AGG - tig0025379:24248-24267 Msa1422420:intron 35.0%
GAATCATGATTGTTGAGGAA+AGG - tig0025379:24340-24359 Msa1422420:intron 35.0%
TGAGGAAAGGAATATAATGG+AGG - tig0025379:24353-24372 Msa1422420:intron 35.0%
AACGAAGGAGAATTATTTCG+CGG + tig0025379:24477-24496 None:intergenic 35.0%
AAAGTTCTTCCTTCTTTCCT+CGG + tig0025379:24525-24544 None:intergenic 35.0%
! AGGAAAGAAGGAAGAACTTT+TGG - tig0025379:24525-24544 Msa1422420:intron 35.0%
! AAAGAAGGAAGAACTTTTGG+TGG - tig0025379:24528-24547 Msa1422420:intron 35.0%
!! TTGGTGGTTTTCTGTTGTTT+CGG - tig0025379:24544-24563 Msa1422420:intron 35.0%
!!! GTATTTTTTTTCAGTCCAGG+TGG - tig0025379:24619-24638 Msa1422420:intron 35.0%
! GATAAGAAGGAGGAATTTTC+TGG - tig0025379:24651-24670 Msa1422420:intron 35.0%
CATCACTAGCAATCAAATCA+CGG + tig0025379:24728-24747 None:intergenic 35.0%
CGTCTCATTATTAACAGACA+AGG + tig0025379:24754-24773 None:intergenic 35.0%
AGACGGTTAGAAATAAAGGA+GGG - tig0025379:24769-24788 Msa1422420:intron 35.0%
GTTAGAAATAAAGGAGGGAT+TGG - tig0025379:24774-24793 Msa1422420:intron 35.0%
! AAAGAAGGAAAGTGATGATG+AGG - tig0025379:24821-24840 Msa1422420:intron 35.0%
TGGTAAGAAGAAACCAATTG+TGG - tig0025379:24908-24927 Msa1422420:intron 35.0%
GAACAATGATATAGAAGAGC+AGG - tig0025379:24938-24957 Msa1422420:intron 35.0%
!! CTATTGGTTTGAGGAATTTC+TGG + tig0025379:24966-24985 None:intergenic 35.0%
GAGTAATCCATACGTACTAT+TGG + tig0025379:24982-25001 None:intergenic 35.0%
! CTCAACAGAAGATAGGATTT+TGG - tig0025379:25016-25035 Msa1422420:intron 35.0%
!! CAGAAGATAGGATTTTGGAA+TGG - tig0025379:25021-25040 Msa1422420:intron 35.0%
TAAATCTTCTCGACCAAACA+AGG + tig0025379:25097-25116 None:intergenic 35.0%
AAGCTTCAAAACTGCAATGA+AGG - tig0025379:25292-25311 Msa1422420:intron 35.0%
AAAGTAGAGGAAGGAAAAGA+TGG + tig0025379:25460-25479 None:intergenic 35.0%
GATATTGTAGCTACCACAAA+AGG - tig0025379:25596-25615 Msa1422420:intron 35.0%
! TTTTGCAATGTTGCAATGTC+CGG + tig0025379:25668-25687 None:intergenic 35.0%
!!! GACACTTGAGTTTTGAAGTA+TGG + tig0025379:25758-25777 None:intergenic 35.0%
AACTCAAGTGTCTCAGTAAA+TGG - tig0025379:25766-25785 Msa1422420:CDS 35.0%
ATTGTTTGGTATTGTGTCCA+TGG - tig0025379:26029-26048 Msa1422420:CDS 35.0%
AGTAACAGCTAAACAATCCA+TGG + tig0025379:26049-26068 None:intergenic 35.0%
CTGGAGACATAAGAAAACAA+AGG + tig0025379:26224-26243 None:intergenic 35.0%
! ATATATTGAACGTTTTCCGG+CGG - tig0025379:26248-26267 Msa1422420:intron 35.0%
ACTTTGCCATCTTTCAACAA+TGG + tig0025379:26777-26796 None:intergenic 35.0%
CCTGCTTAAAGAATTGTTTG+AGG + tig0025379:26814-26833 None:intergenic 35.0%
CCTCAAACAATTCTTTAAGC+AGG - tig0025379:26811-26830 Msa1422420:intron 35.0%
TGAACTTTGACAATCACAGA+AGG - tig0025379:26907-26926 Msa1422420:intron 35.0%
CAATCTCTCAAAGTTCTCAT+TGG - tig0025379:26966-26985 Msa1422420:intron 35.0%
!! AAAGTTCTCATTGGTTCTGT+TGG - tig0025379:26975-26994 Msa1422420:intron 35.0%
TGTTGGATCCAAAAGTAACA+AGG - tig0025379:26992-27011 Msa1422420:intron 35.0%
TGTTTATGCCATAAACTCTC+AGG - tig0025379:27127-27146 Msa1422420:CDS 35.0%
ACGAAACTGTTCAATCATGT+TGG - tig0025379:27333-27352 Msa1422420:CDS 35.0%
! TTAGCAACAGTTTCCCATTT+TGG + tig0025379:27711-27730 None:intergenic 35.0%
ACTATAGAAGCAATGGCATT+TGG - tig0025379:27777-27796 Msa1422420:CDS 35.0%
AAGCTATATTGGAAAGCTTG+TGG - tig0025379:27986-28005 Msa1422420:CDS 35.0%
CTACTAACATTCGAACTTGT+GGG + tig0025379:28072-28091 None:intergenic 35.0%
TCTACTAACATTCGAACTTG+TGG + tig0025379:28073-28092 None:intergenic 35.0%
TCAAATGATCCAATCCAAAC+AGG - tig0025379:28098-28117 Msa1422420:CDS 35.0%
! TGTGCCTTTCTTTCAGTTTT+AGG + tig0025379:28181-28200 None:intergenic 35.0%
TATTTAGAGGCAACCACTAT+CGG + tig0025379:28211-28230 None:intergenic 35.0%
GAAAAAGGCTCCTAGATTTA+TGG - tig0025379:28279-28298 Msa1422420:intron 35.0%
AATACAGAAGATTCTGTGCA+AGG + tig0025379:28530-28549 None:intergenic 35.0%
ATACATAATGTAGTGACTGC+TGG - tig0025379:28735-28754 Msa1422420:five_prime_UTR 35.0%
ATTGAATGATAGCACGTGCT+TGG + tig0025379:23630-23649 None:intergenic 40.0%
ATGAGAGTGAGAGAGAAACA+TGG + tig0025379:23687-23706 None:intergenic 40.0%
CAGCAATAGAGGTGAATTTC+AGG - tig0025379:24380-24399 Msa1422420:intron 40.0%
! GAGTTTAGTCTTCGAAACGA+AGG + tig0025379:24492-24511 None:intergenic 40.0%
AATACCAAGATAAGCCCAGA+GGG + tig0025379:24604-24623 None:intergenic 40.0%
AAATACCAAGATAAGCCCAG+AGG + tig0025379:24605-24624 None:intergenic 40.0%
GTGGGCACATATTGATAAGA+AGG - tig0025379:24638-24657 Msa1422420:intron 40.0%
GGCACATATTGATAAGAAGG+AGG - tig0025379:24641-24660 Msa1422420:intron 40.0%
!!! AAGGAGGAATTTTCTGGCTT+TGG - tig0025379:24657-24676 Msa1422420:intron 40.0%
!!! GAATTTTCTGGCTTTGGAAC+CGG - tig0025379:24663-24682 Msa1422420:intron 40.0%
!!! AATTTTCTGGCTTTGGAACC+GGG - tig0025379:24664-24683 Msa1422420:intron 40.0%
GAGACGGTTAGAAATAAAGG+AGG - tig0025379:24768-24787 Msa1422420:intron 40.0%
! AAATGTAGCCTTGGCAAAGA+AGG - tig0025379:24806-24825 Msa1422420:intron 40.0%
ATCACTTTCCTTCTTTGCCA+AGG + tig0025379:24817-24836 None:intergenic 40.0%
ATCTCCTGCTCTTCTTCTTT+GGG + tig0025379:24869-24888 None:intergenic 40.0%
!! CCATACGTACTATTGGTTTG+AGG + tig0025379:24975-24994 None:intergenic 40.0%
CCTCAAACCAATAGTACGTA+TGG - tig0025379:24972-24991 Msa1422420:intron 40.0%
! AGTACGTATGGATTACTCGT+CGG - tig0025379:24984-25003 Msa1422420:intron 40.0%
CTATCTTCTGTTGAGCCAAA+TGG + tig0025379:25011-25030 None:intergenic 40.0%
! CATTTGGCTCAACAGAAGAT+AGG - tig0025379:25009-25028 Msa1422420:intron 40.0%
TCCACTCTCAATGTTGGAAT+TGG - tig0025379:25151-25170 Msa1422420:intron 40.0%
! GCTTTCTAGAAGACGAATCA+AGG - tig0025379:25247-25266 Msa1422420:intron 40.0%
AAGGCTGATCTTGTAATTGC+TGG - tig0025379:25311-25330 Msa1422420:intron 40.0%
! CATATTAATTTGGCACCGTG+AGG + tig0025379:25514-25533 None:intergenic 40.0%
GGACATTGCAACATTGCAAA+AGG - tig0025379:25667-25686 Msa1422420:CDS 40.0%
! TGAAGTATGGCATGCTTTTG+TGG + tig0025379:25745-25764 None:intergenic 40.0%
TCAGTAAATGGCACCAACTT+TGG - tig0025379:25778-25797 Msa1422420:CDS 40.0%
GTATGTTGAGGATCCAAAGT+TGG + tig0025379:25794-25813 None:intergenic 40.0%
GCAGGAATATAGGTATGTTG+AGG + tig0025379:25806-25825 None:intergenic 40.0%
GTGCATATGTGCAGGAATAT+AGG + tig0025379:25816-25835 None:intergenic 40.0%
! TATATTGAACGTTTTCCGGC+GGG - tig0025379:26249-26268 Msa1422420:intron 40.0%
CTTGCACAGAGTAAAGATGT+TGG - tig0025379:26338-26357 Msa1422420:intron 40.0%
GTTAAGTGTAGAAGGAATGC+CGG + tig0025379:26484-26503 None:intergenic 40.0%
AGAATCGGTCCGAAAAGAAA+TGG - tig0025379:26554-26573 Msa1422420:intron 40.0%
GAATCGGTCCGAAAAGAAAT+GGG - tig0025379:26555-26574 Msa1422420:intron 40.0%
CTGATTCAAGAAGCAATAGC+TGG + tig0025379:26638-26657 None:intergenic 40.0%
TAAAGGAAGGCTTGTCTACA+CGG - tig0025379:26721-26740 Msa1422420:intron 40.0%
TCACAGAAGGAAGCAATTGT+TGG - tig0025379:26920-26939 Msa1422420:intron 40.0%
TGGATCCAAAAGTAACAAGG+TGG - tig0025379:26995-27014 Msa1422420:intron 40.0%
!! GCTGTTCTAAGAAACTGAGA+AGG + tig0025379:27034-27053 None:intergenic 40.0%
ATCTGCTGCAGAGTATAATG+AGG + tig0025379:27108-27127 None:intergenic 40.0%
TATGCCATAAACTCTCAGGT+AGG - tig0025379:27131-27150 Msa1422420:CDS 40.0%
GGGCAAAGTAGATTCATAAG+TGG + tig0025379:27275-27294 None:intergenic 40.0%
TTGGAGCTATGTGAATGTCA+GGG + tig0025379:27295-27314 None:intergenic 40.0%
CTCTAAATGTAGGTAACAGC+TGG + tig0025379:27661-27680 None:intergenic 40.0%
AAGCAAACTAGCAGTCATAC+CGG + tig0025379:27807-27826 None:intergenic 40.0%
AAAAGGATCAAAGGCCTGTT+TGG + tig0025379:28115-28134 None:intergenic 40.0%
!!! CCTTTCTTTCAGTTTTAGGC+TGG + tig0025379:28177-28196 None:intergenic 40.0%
CCAGCCTAAAACTGAAAGAA+AGG - tig0025379:28174-28193 Msa1422420:five_prime_UTR 40.0%
CCTGCTCCCATAAGATTAAT+TGG + tig0025379:28413-28432 None:intergenic 40.0%
CCAATTAATCTTATGGGAGC+AGG - tig0025379:28410-28429 Msa1422420:intron 40.0%
ACAGGTCTTCTTCATCCAAT+TGG - tig0025379:28483-28502 Msa1422420:intron 40.0%
TGCTTAAAAACCAGTTGGCA+AGG - tig0025379:28550-28569 Msa1422420:intron 40.0%
AGAGCTAGCTAGTCACAAAT+TGG + tig0025379:28772-28791 None:intergenic 40.0%
AGAGATTGTGGTTGCTGAGT+TGG + tig0025379:23755-23774 None:intergenic 45.0%
TTCAGCACTGTGAGAGATTG+TGG + tig0025379:23767-23786 None:intergenic 45.0%
ATGGAGGAAAGCAGCAATAG+AGG - tig0025379:24369-24388 Msa1422420:intron 45.0%
CTATCTTCATTAAGGTCGGG+TGG - tig0025379:24417-24436 Msa1422420:intron 45.0%
GCTGCTTCTAATTACCCTCT+GGG - tig0025379:24587-24606 Msa1422420:intron 45.0%
ATTACCCTCTGGGCTTATCT+TGG - tig0025379:24597-24616 Msa1422420:intron 45.0%
CTTATCAATATGTGCCCACC+TGG + tig0025379:24637-24656 None:intergenic 45.0%
ATCAAATCACGGCGAAGACT+CGG + tig0025379:24717-24736 None:intergenic 45.0%
GATCTCCTGCTCTTCTTCTT+TGG + tig0025379:24870-24889 None:intergenic 45.0%
AAGAGCAGGAGATCTTCGAA+AGG - tig0025379:24876-24895 Msa1422420:intron 45.0%
TCTTCGAAAGGTAAAGCTCG+TGG - tig0025379:24888-24907 Msa1422420:intron 45.0%
AACGTTCCGGGACATGTAAT+AGG - tig0025379:25054-25073 Msa1422420:intron 45.0%
TTCCGGGACATGTAATAGGA+AGG - tig0025379:25058-25077 Msa1422420:intron 45.0%
TCCGGGACATGTAATAGGAA+GGG - tig0025379:25059-25078 Msa1422420:intron 45.0%
GCCAATTCCAACATTGAGAG+TGG + tig0025379:25155-25174 None:intergenic 45.0%
AAGTGCAACAGCTGAAACAG+TGG + tig0025379:25201-25220 None:intergenic 45.0%
TTTCAGCTGTTGCACTTAGC+AGG - tig0025379:25204-25223 Msa1422420:intron 45.0%
! AAGACGAATCAAGGTGCTTG+AGG - tig0025379:25256-25275 Msa1422420:intron 45.0%
GTTCAGCTGTATGTGCATCA+TGG - tig0025379:25333-25352 Msa1422420:CDS 45.0%
GCTGTATGTGCATCATGGAT+TGG - tig0025379:25338-25357 Msa1422420:CDS 45.0%
CAATGTCCGGTCAAAAGACT+AGG + tig0025379:25655-25674 None:intergenic 45.0%
AGGAGTTTGTGCATATGTGC+AGG + tig0025379:25824-25843 None:intergenic 45.0%
! AACGGTCGAAGTACTCTCTA+CGG + tig0025379:26308-26327 None:intergenic 45.0%
! AGAGTACTTCGACCGTTCAA+AGG - tig0025379:26311-26330 Msa1422420:intron 45.0%
GAGTACTTCGACCGTTCAAA+GGG - tig0025379:26312-26331 Msa1422420:intron 45.0%
TGTGCAAGACACCCTTTGAA+CGG + tig0025379:26326-26345 None:intergenic 45.0%
ACAAAGGAACAGTTGCAGGT+TGG + tig0025379:26434-26453 None:intergenic 45.0%
ACAGACAAAGGAACAGTTGC+AGG + tig0025379:26438-26457 None:intergenic 45.0%
GATGAACTGGCATTTGTAGC+CGG - tig0025379:26462-26481 Msa1422420:intron 45.0%
! GACGGAGTGTTAAGTGTAGA+AGG + tig0025379:26492-26511 None:intergenic 45.0%
AAGGCAGTTGTTGCGAGAAT+CGG - tig0025379:26539-26558 Msa1422420:intron 45.0%
TCTCTAAGTAGCATCAACCC+CGG - tig0025379:26606-26625 Msa1422420:intron 45.0%
!! AGATGGCAAAGTAGCTCTGA+AGG - tig0025379:26785-26804 Msa1422420:intron 45.0%
TAATGAGGCAACCTGTGTTG+TGG + tig0025379:27093-27112 None:intergenic 45.0%
ACGACCTACCTGAGAGTTTA+TGG + tig0025379:27138-27157 None:intergenic 45.0%
CTTGGAGCTATGTGAATGTC+AGG + tig0025379:27296-27315 None:intergenic 45.0%
! GCAACAGTTTCCCATTTTGG+AGG + tig0025379:27708-27727 None:intergenic 45.0%
CAAAATGGTGAACAGGGACT+TGG - tig0025379:27735-27754 Msa1422420:CDS 45.0%
GACTTGGAGAGACATTTGGA+CGG - tig0025379:27751-27770 Msa1422420:CDS 45.0%
ACTTGGAGAGACATTTGGAC+GGG - tig0025379:27752-27771 Msa1422420:CDS 45.0%
ACGGGTGACTATAGAAGCAA+TGG - tig0025379:27770-27789 Msa1422420:CDS 45.0%
! AGCAATGGCATTTGGTCTTC+CGG - tig0025379:27785-27804 Msa1422420:CDS 45.0%
TTCGAACTTGTGGGACTGTT+TGG + tig0025379:28063-28082 None:intergenic 45.0%
GATCAAAGGCCTGTTTGGAT+TGG + tig0025379:28110-28129 None:intergenic 45.0%
ATCTTATGGGAGCAGGTTCT+CGG - tig0025379:28417-28436 Msa1422420:intron 45.0%
CAGTTGGCAAGGAAGCAAAT+GGG - tig0025379:28561-28580 Msa1422420:intron 45.0%
AGTTGGCAAGGAAGCAAATG+GGG - tig0025379:28562-28581 Msa1422420:intron 45.0%
AGGAAGCAAATGGGGATAGA+AGG - tig0025379:28570-28589 Msa1422420:intron 45.0%
GATAGAAGGCAGGAAAAAGG+TGG - tig0025379:28584-28603 Msa1422420:intron 45.0%
!!! AAATATTTTTTAATTTTCAA+TGG + tig0025379:27597-27616 None:intergenic 5.0%
TAAACTCTAGTCGAACGCCG+AGG - tig0025379:24505-24524 Msa1422420:intron 50.0%
! GGAGCAATCGTGTGTTGTTG+TGG - tig0025379:24565-24584 Msa1422420:intron 50.0%
GGCTGCTTCTAATTACCCTC+TGG - tig0025379:24586-24605 Msa1422420:intron 50.0%
GCATCTACGCCGGTATTTCT+TGG + tig0025379:24690-24709 None:intergenic 50.0%
CAAGCCCAAAGAAGAAGAGC+AGG - tig0025379:24862-24881 Msa1422420:intron 50.0%
GGATTACTCGTCGGTCCATT+TGG - tig0025379:24993-25012 Msa1422420:intron 50.0%
TGGAGTCCTCAGAAACGTTC+CGG - tig0025379:25041-25060 Msa1422420:intron 50.0%
CCCCTTCCTATTACATGTCC+CGG + tig0025379:25063-25082 None:intergenic 50.0%
CCGGGACATGTAATAGGAAG+GGG - tig0025379:25060-25079 Msa1422420:intron 50.0%
CGGGACATGTAATAGGAAGG+GGG - tig0025379:25061-25080 Msa1422420:intron 50.0%
TTCCACGAGCTTTCCATGAC+CGG - tig0025379:25125-25144 Msa1422420:intron 50.0%
CAACATTGAGAGTGGAGCTC+CGG + tig0025379:25147-25166 None:intergenic 50.0%
! GCAACAGAGCTTTTGAGCTG+TGG - tig0025379:25173-25192 Msa1422420:intron 50.0%
AGCTGTTGCACTTAGCAGGA+AGG - tig0025379:25208-25227 Msa1422420:intron 50.0%
GCTGTTGCACTTAGCAGGAA+GGG - tig0025379:25209-25228 Msa1422420:intron 50.0%
!! GGACGACCTAGTCTTTTGAC+CGG - tig0025379:25646-25665 Msa1422420:CDS 50.0%
AAGTAGCATCAACCCCGGAA+AGG - tig0025379:26611-26630 Msa1422420:intron 50.0%
AGTAGCATCAACCCCGGAAA+GGG - tig0025379:26612-26631 Msa1422420:intron 50.0%
AAGCAATAGCTGGCCCTTTC+CGG + tig0025379:26628-26647 None:intergenic 50.0%
CAGGGACTTGGAGAGACATT+TGG - tig0025379:27747-27766 Msa1422420:CDS 50.0%
TAGAGGCAACCACTATCGGA+AGG + tig0025379:28207-28226 None:intergenic 50.0%
! AGGTTCTCGGAACGGATTCT+GGG - tig0025379:28430-28449 Msa1422420:intron 50.0%
ATCCAATTGGACGTGCAGCA+GGG - tig0025379:28496-28515 Msa1422420:intron 50.0%
CCATTTGCTTCCTTGCCAAC+TGG + tig0025379:28563-28582 None:intergenic 50.0%
CCAGTTGGCAAGGAAGCAAA+TGG - tig0025379:28560-28579 Msa1422420:intron 50.0%
AGCAAATGGGGATAGAAGGC+AGG - tig0025379:28574-28593 Msa1422420:intron 50.0%
GGGGATAGAAGGCAGGAAAA+AGG - tig0025379:28581-28600 Msa1422420:intron 50.0%
AGTCGAACGCCGAGGAAAGA+AGG - tig0025379:24513-24532 Msa1422420:intron 55.0%
GGAACCGGGCCAAGAAATAC+CGG - tig0025379:24678-24697 Msa1422420:CDS 55.0%
TACGCCGGTATTTCTTGGCC+CGG + tig0025379:24685-24704 None:intergenic 55.0%
ACTCGGATCAGCATCTACGC+CGG + tig0025379:24700-24719 None:intergenic 55.0%
! GGGCTTGCTTTACGACGAGA+AGG + tig0025379:24849-24868 None:intergenic 55.0%
GGAGTCCTCAGAAACGTTCC+GGG - tig0025379:25042-25061 Msa1422420:intron 55.0%
CATGTCCCGGAACGTTTCTG+AGG + tig0025379:25050-25069 None:intergenic 55.0%
! GGGACTTTGCACGCCTTGTT+TGG - tig0025379:25081-25100 Msa1422420:intron 55.0%
CGGAGCTCCACTCTCAATGT+TGG - tig0025379:25145-25164 Msa1422420:intron 55.0%
GTTGCACTTAGCAGGAAGGG+TGG - tig0025379:25212-25231 Msa1422420:intron 55.0%
TGCGAGCCAAGTTGCTTGGT+GGG - tig0025379:26272-26291 Msa1422420:intron 55.0%
CCATGACCCACCAAGCAACT+TGG + tig0025379:26281-26300 None:intergenic 55.0%
! CCAAGTTGCTTGGTGGGTCA+TGG - tig0025379:26278-26297 Msa1422420:intron 55.0%
AGCAATAGCTGGCCCTTTCC+GGG + tig0025379:26627-26646 None:intergenic 55.0%
AGGCAACCTGTGTTGTGGCT+GGG + tig0025379:27088-27107 None:intergenic 55.0%
ATGGGAGCAGGTTCTCGGAA+CGG - tig0025379:28422-28441 Msa1422420:intron 55.0%
! CAGGTTCTCGGAACGGATTC+TGG - tig0025379:28429-28448 Msa1422420:intron 55.0%
! GGTTCTCGGAACGGATTCTG+GGG - tig0025379:28431-28450 Msa1422420:intron 55.0%
! GTTCTCGGAACGGATTCTGG+GGG - tig0025379:28432-28451 Msa1422420:intron 55.0%
! AACGGATTCTGGGGGAACGA+AGG - tig0025379:28440-28459 Msa1422420:intron 55.0%
CATCCAATTGGACGTGCAGC+AGG - tig0025379:28495-28514 Msa1422420:intron 55.0%
TTCCCTGCTGCACGTCCAAT+TGG + tig0025379:28501-28520 None:intergenic 55.0%
CTCCGGTCATGGAAAGCTCG+TGG + tig0025379:25130-25149 None:intergenic 60.0%
TGAGAGTGGAGCTCCGGTCA+TGG + tig0025379:25141-25160 None:intergenic 60.0%
GTGCGAGCCAAGTTGCTTGG+TGG - tig0025379:26271-26290 Msa1422420:intron 60.0%
GCAATAGCTGGCCCTTTCCG+GGG + tig0025379:26626-26645 None:intergenic 60.0%
GGCAACCTGTGTTGTGGCTG+GGG + tig0025379:27087-27106 None:intergenic 60.0%
GAGGCAACCTGTGTTGTGGC+TGG + tig0025379:27089-27108 None:intergenic 60.0%
GGCACACTGCCTTCCGATAG+TGG - tig0025379:28195-28214 Msa1422420:five_prime_UTR 60.0%
CGGGTGCGAGCCAAGTTGCT+TGG - tig0025379:26268-26287 Msa1422420:intron 65.0%
GTGGACCCCAGCCACAACAC+AGG - tig0025379:27079-27098 Msa1422420:intron 65.0%
! GCAACTTGGCTCGCACCCGC+CGG + tig0025379:26267-26286 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0025379 gene 23554 28921 23554 ID=Msa1422420;Name=Msa1422420
tig0025379 mRNA 23554 28921 23554 ID=Msa1422420-mRNA-1;Parent=Msa1422420;Name=Msa1422420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=421|1|1|1|0.8|0.66|6|241|710
tig0025379 exon 23554 24043 23554 ID=Msa1422420-mRNA-1:exon:2564;Parent=Msa1422420-mRNA-1
tig0025379 exon 24669 24725 24669 ID=Msa1422420-mRNA-1:exon:2563;Parent=Msa1422420-mRNA-1
tig0025379 exon 25327 25549 25327 ID=Msa1422420-mRNA-1:exon:2562;Parent=Msa1422420-mRNA-1
tig0025379 exon 25643 26231 25643 ID=Msa1422420-mRNA-1:exon:2561;Parent=Msa1422420-mRNA-1
tig0025379 exon 27116 28270 27116 ID=Msa1422420-mRNA-1:exon:2560;Parent=Msa1422420-mRNA-1
tig0025379 exon 28641 28921 28641 ID=Msa1422420-mRNA-1:exon:2559;Parent=Msa1422420-mRNA-1
tig0025379 five_prime_UTR 28641 28921 28641 ID=Msa1422420-mRNA-1:five_prime_utr;Parent=Msa1422420-mRNA-1
tig0025379 five_prime_UTR 28131 28270 28131 ID=Msa1422420-mRNA-1:five_prime_utr;Parent=Msa1422420-mRNA-1
tig0025379 CDS 27116 28130 27116 ID=Msa1422420-mRNA-1:cds;Parent=Msa1422420-mRNA-1
tig0025379 CDS 25643 26231 25643 ID=Msa1422420-mRNA-1:cds;Parent=Msa1422420-mRNA-1
tig0025379 CDS 25327 25549 25327 ID=Msa1422420-mRNA-1:cds;Parent=Msa1422420-mRNA-1
tig0025379 CDS 24669 24725 24669 ID=Msa1422420-mRNA-1:cds;Parent=Msa1422420-mRNA-1
tig0025379 CDS 23795 24043 23795 ID=Msa1422420-mRNA-1:cds;Parent=Msa1422420-mRNA-1
tig0025379 three_prime_UTR 23554 23794 23554 ID=Msa1422420-mRNA-1:three_prime_utr;Parent=Msa1422420-mRNA-1
Gene Sequence

>Msa1422420

ATGATTGTTGAGGAAAGGAATATAATGGAGGAAAGCAGCAATAGAGGTGAATTTCAGGCTAGTTTAGCGAAACTATCTTCATTAAGGTCGGGTGGAAGTTTTAAATCAACATTATCAGGAAGATCGTCTCCGCGAAATAATTCTCCTTCGTTTCGAAGACTAAACTCTAGTCGAACGCCGAGGAAAGAAGGAAGAACTTTTGGTGGTTTTCTGTTGTTTCGGAGCAATCGTGTGTTGTTGTGGCTGCTTCTAATTACCCTCTGGGCTTATCTTGGTATTTTTTTTCAGTCCAGGTGGGCACATATTGATAAGAAGGAGGAATTTTCTGGCTTTGGAACCGGGCCAAGAAATACCGGCGTAGATGCTGATCCGAGTCTTCGCCGTGATTTGATTGCTAGTGATGACTCCTTGTCTGTTAATAATGAGACGGTTAGAAATAAAGGAGGGATTGGTAGAACAATAAATGTAGCCTTGGCAAAGAAGGAAAGTGATGATGAGGTTCCTTCTCGTCGTAAAGCAAGCCCAAAGAAGAAGAGCAGGAGATCTTCGAAAGGTAAAGCTCGTGGTAAGAAGAAACCAATTGTGGAAATTAAGAACAATGATATAGAAGAGCAGGAACCAGAAATTCCTCAAACCAATAGTACGTATGGATTACTCGTCGGTCCATTTGGCTCAACAGAAGATAGGATTTTGGAATGGAGTCCTCAGAAACGTTCCGGGACATGTAATAGGAAGGGGGACTTTGCACGCCTTGTTTGGTCGAGAAGATTTATCTTGATATTCCACGAGCTTTCCATGACCGGAGCTCCACTCTCAATGTTGGAATTGGCAACAGAGCTTTTGAGCTGTGGTGCCACTGTTTCAGCTGTTGCACTTAGCAGGAAGGGTGGTTTGATGTCAGAGCTTTCTAGAAGACGAATCAAGGTGCTTGAGGACAAAGCAGATCAAAGCTTCAAAACTGCAATGAAGGCTGATCTTGTAATTGCTGGTTCAGCTGTATGTGCATCATGGATTGAACAATATATTGAACGTTTTCCGGCGGGTGCGAGCCAAGTTGCTTGGTGGGTCATGGAAAACCGTAGAGAGTACTTCGACCGTTCAAAGGGTGTCTTGCACAGAGTAAAGATGTTGGTTTTTCTTTCTGAATCACAATCTAAACAATGGCAAAAGTGGTGCGAAGAAGAAAACATAAAACTGAGATACCAACCTGCAACTGTTCCTTTGTCTGTTAATGATGAACTGGCATTTGTAGCCGGCATTCCTTCTACACTTAACACTCCGTCCTTTAGTACTGATAAAATGATTGAGAAAAGGCAGTTGTTGCGAGAATCGGTCCGAAAAGAAATGGGATTAACTGACAATGATATGCTTGTAATATCTCTAAGTAGCATCAACCCCGGAAAGGGCCAGCTATTGCTTCTTGAATCAGCAATCTCAGTAGTAGAACACAAACAATTGCAAGATGATAAGAACATGAAAAAATTATCAAATATAAAGGAAGGCTTGTCTACACGGACTAGAAGACATCGTATGAGAAAATTGTTACCATTGTTGAAAGATGGCAAAGTAGCTCTGAAGGATACCTCAAACAATTCTTTAAGCAGAAGGAAGCAATTGTTGGCTAATAACAAAGCAACAATGCAGCAATCTCTCAAAGTTCTCATTGGTTCTGTTGGATCCAAAAGTAACAAGGTGGATTATGTTAAAAGCCTTCTCAGTTTCTTAGAACAGCATCCAAACACTTCAAAATCAGTTTTGTGGACCCCAGCCACAACACAGGTTGCCTCATTATACTCTGCAGCAGATGTTTATGCCATAAACTCTCAGGGACTTGGAGAGACATTTGGACGGGTGACTATAGAAGCAATGGCATTTGGTCTTCCGGTTCTCGGAACGGATTCTGGGGGAACGAAGGAGATAGTTGAGAACAATGTTACAGGTCTTCTTCATCCAATTGGACGTGCAGCAGGGAACGATGTCCTTGCACAGAATCTTCTGTATTTGCTTAAAAACCAGTTGGCAAGGAAGCAAATGGGGATAGAAGGCAGGAAAAAGGTGGAGAGAATGTATTTGAAGCAACACATGTATAAGAAATTTGTTGAGGTTATTGTTAGGTGCATGAGAAGCAAATAA

Protein sequence

>Msa1422420

MIVEERNIMEESSNRGEFQASLAKLSSLRSGGSFKSTLSGRSSPRNNSPSFRRLNSSRTPRKEGRTFGGFLLFRSNRVLLWLLLITLWAYLGIFFQSRWAHIDKKEEFSGFGTGPRNTGVDADPSLRRDLIASDDSLSVNNETVRNKGGIGRTINVALAKKESDDEVPSRRKASPKKKSRRSSKGKARGKKKPIVEIKNNDIEEQEPEIPQTNSTYGLLVGPFGSTEDRILEWSPQKRSGTCNRKGDFARLVWSRRFILIFHELSMTGAPLSMLELATELLSCGATVSAVALSRKGGLMSELSRRRIKVLEDKADQSFKTAMKADLVIAGSAVCASWIEQYIERFPAGASQVAWWVMENRREYFDRSKGVLHRVKMLVFLSESQSKQWQKWCEEENIKLRYQPATVPLSVNDELAFVAGIPSTLNTPSFSTDKMIEKRQLLRESVRKEMGLTDNDMLVISLSSINPGKGQLLLLESAISVVEHKQLQDDKNMKKLSNIKEGLSTRTRRHRMRKLLPLLKDGKVALKDTSNNSLSRRKQLLANNKATMQQSLKVLIGSVGSKSNKVDYVKSLLSFLEQHPNTSKSVLWTPATTQVASLYSAADVYAINSQGLGETFGRVTIEAMAFGLPVLGTDSGGTKEIVENNVTGLLHPIGRAAGNDVLAQNLLYLLKNQLARKQMGIEGRKKVERMYLKQHMYKKFVEVIVRCMRSK*