Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729490 | XP_003614405.1 | 94.191 | 241 | 11 | 1 | 2 | 239 | 4 | 244 | 4.09e-141 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729490 | sp|Q9C540|ACFR4_ARATH | 61.538 | 247 | 76 | 4 | 1 | 239 | 1 | 236 | 5.62e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729490 | G7JX23 | 94.191 | 241 | 11 | 1 | 2 | 239 | 4 | 244 | 1.95e-141 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710800 | Msa0729490 | 0.871675 | 5.705749e-67 | -8.615850e-47 |
| Msa0729490 | Msa0756490 | 0.814070 | 1.857320e-51 | -8.615850e-47 |
| Msa0729490 | Msa0807260 | 0.922914 | 5.283693e-89 | -8.615850e-47 |
| Msa0729490 | Msa0866270 | 0.833219 | 6.048224e-56 | -8.615850e-47 |
| Msa0729490 | Msa1140210 | 0.801258 | 9.801620e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729490 | MtrunA17_Chr5g0422371 | 94.191 | 241 | 11 | 1 | 2 | 239 | 4 | 244 | 3.76e-145 | 405 |
| Msa0729490 | MtrunA17_Chr6g0456901 | 45.374 | 227 | 116 | 4 | 1 | 223 | 1 | 223 | 1.53e-57 | 182 |
| Msa0729490 | MtrunA17_Chr1g0203371 | 40.625 | 224 | 121 | 6 | 1 | 219 | 1 | 217 | 1.56e-43 | 146 |
| Msa0729490 | MtrunA17_Chr1g0161921 | 38.208 | 212 | 116 | 5 | 15 | 221 | 16 | 217 | 8.36e-38 | 131 |
| Msa0729490 | MtrunA17_Chr1g0161941 | 32.850 | 207 | 127 | 6 | 14 | 216 | 9 | 207 | 6.93e-28 | 105 |
| Msa0729490 | MtrunA17_Chr8g0375991 | 35.122 | 205 | 117 | 7 | 14 | 213 | 9 | 202 | 1.57e-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729490 | AT1G26100.1 | 61.538 | 247 | 76 | 4 | 1 | 239 | 1 | 236 | 5.71e-90 | 265 |
| Msa0729490 | AT5G38630.1 | 46.667 | 225 | 105 | 7 | 10 | 225 | 10 | 228 | 4.00e-59 | 187 |
| Msa0729490 | AT4G25570.1 | 38.967 | 213 | 121 | 5 | 9 | 217 | 8 | 215 | 2.25e-40 | 139 |
| Msa0729490 | AT4G25570.2 | 38.967 | 213 | 121 | 5 | 9 | 217 | 49 | 256 | 7.15e-40 | 139 |
| Msa0729490 | AT1G14730.1 | 30.233 | 215 | 135 | 5 | 14 | 223 | 20 | 224 | 2.44e-20 | 86.7 |
Find 68 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5_1:+36804169 | Msa0729490:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5_1:+36803730 | Msa0729490:CDS |
| CCTTAGTGGCTTTGTTATTC+TGG | 0.121532 | 5_1:+36806673 | Msa0729490:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5_1:+36804160 | Msa0729490:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5_1:+36804082 | Msa0729490:intron |
| TTGATTTGTGTATCACTCTT+TGG | 0.246496 | 5_1:+36804262 | Msa0729490:CDS |
| TAATAGGCTTCTTGAACTTT+TGG | 0.266466 | 5_1:+36806450 | Msa0729490:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5_1:+36804170 | Msa0729490:CDS |
| TTACCATGGCATGTATTTCT+TGG | 0.277630 | 5_1:+36806509 | Msa0729490:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5_1:+36804176 | Msa0729490:CDS |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5_1:-36803786 | None:intergenic |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5_1:+36804233 | Msa0729490:CDS |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5_1:+36804161 | Msa0729490:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5_1:+36803731 | Msa0729490:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5_1:-36803949 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5_1:-36804207 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5_1:+36806635 | Msa0729490:CDS |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5_1:+36803920 | Msa0729490:CDS |
| ACATTTAGTTACAGTTGTTA+TGG | 0.357021 | 5_1:+36803647 | Msa0729490:exon |
| GCAGTAGCAACGGCTGAAAC+TGG | 0.360280 | 5_1:+36806551 | Msa0729490:CDS |
| TTAGGTCTTGCTCTCCTTAG+TGG | 0.363802 | 5_1:+36806659 | Msa0729490:CDS |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | 5_1:+36806817 | Msa0729490:three_prime_UTR |
| GTTGTAAATTCTTTAGGCTT+AGG | 0.366014 | 5_1:+36806641 | Msa0729490:CDS |
| ATTGTATTGCAGTGGCTAAT+AGG | 0.375849 | 5_1:+36806434 | Msa0729490:intron |
| CCTAAGTATCAAATTCTTCA+AGG | 0.384117 | 5_1:+36806707 | Msa0729490:CDS |
| CCTTGAAGAATTTGATACTT+AGG | 0.393626 | 5_1:-36806707 | None:intergenic |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5_1:+36803785 | Msa0729490:CDS |
| TGTATCACTCTTTGGAGCTC+AGG | 0.406685 | 5_1:+36804270 | Msa0729490:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5_1:-36806532 | None:intergenic |
| AAATGCGAACAGTGAGGATA+AGG | 0.435065 | 5_1:+36806483 | Msa0729490:CDS |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5_1:+36804199 | Msa0729490:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.438774 | 5_1:+36804109 | Msa0729490:intron |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5_1:+36804238 | Msa0729490:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5_1:-36806618 | None:intergenic |
| ACTACTAACTACTACACTCT+TGG | 0.453368 | 5_1:-36803582 | None:intergenic |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5_1:-36803776 | None:intergenic |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5_1:+36804142 | Msa0729490:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5_1:+36804101 | Msa0729490:intron |
| AAAAGCAAAGGGAGTAGTGA+GGG | 0.473857 | 5_1:-36803681 | None:intergenic |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5_1:+36803913 | Msa0729490:intron |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5_1:+36804237 | Msa0729490:CDS |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.482173 | 5_1:+36804108 | Msa0729490:intron |
| GGTCAAGGGGTTGAAGAAAT+CGG | 0.491162 | 5_1:+36804123 | Msa0729490:CDS |
| CCAGAATAACAAAGCCACTA+AGG | 0.497367 | 5_1:-36806673 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5_1:+36804143 | Msa0729490:CDS |
| TCACTGTTCGCATTTCTCCT+CGG | 0.512543 | 5_1:-36806475 | None:intergenic |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5_1:+36806619 | Msa0729490:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5_1:+36804200 | Msa0729490:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5_1:+36804207 | Msa0729490:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5_1:-36804243 | None:intergenic |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.539851 | 5_1:+36804110 | Msa0729490:intron |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5_1:+36804147 | Msa0729490:CDS |
| TGGTCACAAGCGAATTAAGA+TGG | 0.551793 | 5_1:+36806837 | Msa0729490:three_prime_UTR |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5_1:+36806529 | Msa0729490:CDS |
| TTTCTTCAACCCCTTGACCC+AGG | 0.573239 | 5_1:-36804119 | None:intergenic |
| AGGCCAAGAAATACATGCCA+TGG | 0.575316 | 5_1:-36806512 | None:intergenic |
| TTATGCATTGGCAGTAGCAA+CGG | 0.579204 | 5_1:+36806541 | Msa0729490:CDS |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5_1:+36804102 | Msa0729490:intron |
| GCCTAAAGAATTTACAACCA+TGG | 0.590393 | 5_1:-36806636 | None:intergenic |
| GTGAGTGAGTGACTAGTGAA+AGG | 0.593336 | 5_1:+36803603 | Msa0729490:five_prime_UTR |
| CTAACTACTACACTCTTGGA+TGG | 0.593357 | 5_1:-36803578 | None:intergenic |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5_1:-36803923 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5_1:-36803919 | None:intergenic |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5_1:+36804144 | Msa0729490:CDS |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5_1:-36803798 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5_1:-36803670 | None:intergenic |
| TGAGGATAAGGATCTTACCA+TGG | 0.703662 | 5_1:+36806495 | Msa0729490:CDS |
| GAGGAGAAATGCGAACAGTG+AGG | 0.732322 | 5_1:+36806477 | Msa0729490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTAAATAAATATTA+AGG | + | chr5_1:36804481-36804500 | Msa0729490:intron | 0.0% |
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5_1:36803854-36803873 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5_1:36803855-36803874 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5_1:36803892-36803911 | Msa0729490:intron | 10.0% |
| !!! | TAAAAATTCTGAAATTTTTT+TGG | + | chr5_1:36805062-36805081 | Msa0729490:intron | 10.0% |
| !!! | AAATTTTAAATGAAATTGAA+AGG | - | chr5_1:36805563-36805582 | None:intergenic | 10.0% |
| !! | TTAACTATTAATTTAAGAAT+TGG | + | chr5_1:36806176-36806195 | Msa0729490:intron | 10.0% |
| !!! | TTCTAAGATTAATTTTTACT+TGG | + | chr5_1:36804338-36804357 | Msa0729490:intron | 15.0% |
| !!! | TCTAAGATTAATTTTTACTT+GGG | + | chr5_1:36804339-36804358 | Msa0729490:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr5_1:36804866-36804885 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+AGG | + | chr5_1:36805177-36805196 | Msa0729490:intron | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | + | chr5_1:36805237-36805256 | Msa0729490:intron | 15.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5_1:36803985-36804004 | Msa0729490:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5_1:36803986-36804005 | Msa0729490:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5_1:36803990-36804009 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5_1:36803991-36804010 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5_1:36803992-36804011 | Msa0729490:intron | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5_1:36804025-36804044 | Msa0729490:intron | 20.0% |
| !!! | AATTTTATTTCCTGATGAAT+AGG | - | chr5_1:36804468-36804487 | None:intergenic | 20.0% |
| !!! | TTAGCTTATGAAATGATTTT+TGG | + | chr5_1:36804540-36804559 | Msa0729490:intron | 20.0% |
| !!! | ATTTTGTATTTTCCTTCTTT+GGG | - | chr5_1:36804701-36804720 | None:intergenic | 20.0% |
| !!! | TAAAAAGAACATGAAAGTAT+AGG | - | chr5_1:36804763-36804782 | None:intergenic | 20.0% |
| !!! | TATACTTTCATGTTCTTTTT+AGG | + | chr5_1:36804762-36804781 | Msa0729490:intron | 20.0% |
| !!! | ATACTTTCATGTTCTTTTTA+GGG | + | chr5_1:36804763-36804782 | Msa0729490:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr5_1:36804806-36804825 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr5_1:36804867-36804886 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr5_1:36805145-36805164 | Msa0729490:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr5_1:36805146-36805165 | Msa0729490:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr5_1:36805173-36805192 | None:intergenic | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | + | chr5_1:36805236-36805255 | Msa0729490:intron | 20.0% |
| !!! | AGAATGGTTAAATATGTTTT+TGG | - | chr5_1:36805264-36805283 | None:intergenic | 20.0% |
| !! | AATCGTGAAATTAAAAAGAA+TGG | - | chr5_1:36805280-36805299 | None:intergenic | 20.0% |
| !! | AATTCTATTATTATCCCATA+TGG | + | chr5_1:36805387-36805406 | Msa0729490:intron | 20.0% |
| !! | AATATTTATTCGATCCATAT+GGG | - | chr5_1:36805404-36805423 | None:intergenic | 20.0% |
| !!! | TTGTCAAAAGTTTTTCAATT+AGG | + | chr5_1:36805442-36805461 | Msa0729490:intron | 20.0% |
| !! | CAAAAAATTTGAACAAAAGA+GGG | + | chr5_1:36805671-36805690 | Msa0729490:intron | 20.0% |
| !! | AAAAAATTTGAACAAAAGAG+GGG | + | chr5_1:36805672-36805691 | Msa0729490:intron | 20.0% |
| !! | CTTATGCAAATTTATTAGTT+AGG | - | chr5_1:36805774-36805793 | None:intergenic | 20.0% |
| !! | CTCAAATAATGATAACTAAT+TGG | - | chr5_1:36805800-36805819 | None:intergenic | 20.0% |
| !!! | ATTCACAAATTAAGCTATTT+TGG | + | chr5_1:36805840-36805859 | Msa0729490:intron | 20.0% |
| !!! | TTAGTGTATACATAATCTTT+TGG | + | chr5_1:36806332-36806351 | Msa0729490:intron | 20.0% |
| !!! | TAGTGTATACATAATCTTTT+GGG | + | chr5_1:36806333-36806352 | Msa0729490:intron | 20.0% |
| !!! | GTGTATAGATATTTTATGTA+TGG | + | chr5_1:36806366-36806385 | Msa0729490:intron | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | + | chr5_1:36806817-36806836 | Msa0729490:three_prime_UTR | 20.0% |
| ! | ACATTTAGTTACAGTTGTTA+TGG | + | chr5_1:36803647-36803666 | Msa0729490:exon | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5_1:36803938-36803957 | Msa0729490:CDS | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5_1:36804199-36804218 | Msa0729490:CDS | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5_1:36804200-36804219 | Msa0729490:CDS | 25.0% |
| ! | AATATGCACTAAATATGTGA+TGG | + | chr5_1:36804594-36804613 | Msa0729490:intron | 25.0% |
| ! | ATTGTACTAACTAGCTAAAT+TGG | - | chr5_1:36804656-36804675 | None:intergenic | 25.0% |
| !! | CATTTTGTATTTTCCTTCTT+TGG | - | chr5_1:36804702-36804721 | None:intergenic | 25.0% |
| !! | TCGTCTTGTTGTAAAAATTT+AGG | + | chr5_1:36804736-36804755 | Msa0729490:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr5_1:36804807-36804826 | None:intergenic | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | + | chr5_1:36805192-36805211 | Msa0729490:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr5_1:36805205-36805224 | Msa0729490:intron | 25.0% |
| ! | CAATATTTATTCGATCCATA+TGG | - | chr5_1:36805405-36805424 | None:intergenic | 25.0% |
| ! | ATCATAAGAGAAAATATACG+AGG | - | chr5_1:36805531-36805550 | None:intergenic | 25.0% |
| !! | CCTCTTTTGTTCAAATTTTT+TGG | - | chr5_1:36805673-36805692 | None:intergenic | 25.0% |
| ! | CCAAAAAATTTGAACAAAAG+AGG | + | chr5_1:36805670-36805689 | Msa0729490:intron | 25.0% |
| !!! | TCAAAAAGTATTTTCCATGT+AGG | + | chr5_1:36805709-36805728 | Msa0729490:intron | 25.0% |
| !!! | ATTACATTTTTTCTCCTACA+TGG | - | chr5_1:36805726-36805745 | None:intergenic | 25.0% |
| ! | ATGCAAATTTATTAGTTAGG+AGG | - | chr5_1:36805771-36805790 | None:intergenic | 25.0% |
| !!! | CAAATTAAGCTATTTTGGTA+CGG | + | chr5_1:36805845-36805864 | Msa0729490:intron | 25.0% |
| ! | AACTCTCTATTTCATACAAA+TGG | - | chr5_1:36805897-36805916 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr5_1:36806223-36806242 | Msa0729490:intron | 25.0% |
| !! | AGTGTATACATAATCTTTTG+GGG | + | chr5_1:36806334-36806353 | Msa0729490:intron | 25.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5_1:36803837-36803856 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5_1:36803944-36803963 | Msa0729490:CDS | 30.0% |
| !! | TTGATTTGTGTATCACTCTT+TGG | + | chr5_1:36804262-36804281 | Msa0729490:CDS | 30.0% |
| ! | AGACTCTTTTGTATCAGTTT+TGG | + | chr5_1:36804513-36804532 | Msa0729490:intron | 30.0% |
| AACTAGCTAAATTGGAAAGT+AGG | - | chr5_1:36804648-36804667 | None:intergenic | 30.0% | |
| !! | AGTCGAAGGAATATTTTAGA+GGG | - | chr5_1:36804837-36804856 | None:intergenic | 30.0% |
| !! | AAGTCGAAGGAATATTTTAG+AGG | - | chr5_1:36804838-36804857 | None:intergenic | 30.0% |
| AGATTCTATGAGAGTTAACT+TGG | - | chr5_1:36805626-36805645 | None:intergenic | 30.0% | |
| !!! | AATTTTTTGGCAGTTTTTCG+TGG | - | chr5_1:36805660-36805679 | None:intergenic | 30.0% |
| ATGCATAATATATGCAAGGT+TGG | + | chr5_1:36806227-36806246 | Msa0729490:intron | 30.0% | |
| TTCAACATATTGTATTGCAG+TGG | + | chr5_1:36806426-36806445 | Msa0729490:intron | 30.0% | |
| ! | TAATAGGCTTCTTGAACTTT+TGG | + | chr5_1:36806450-36806469 | Msa0729490:CDS | 30.0% |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5_1:36806635-36806654 | Msa0729490:CDS | 30.0% | |
| GTTGTAAATTCTTTAGGCTT+AGG | + | chr5_1:36806641-36806660 | Msa0729490:CDS | 30.0% | |
| CCTTGAAGAATTTGATACTT+AGG | - | chr5_1:36806710-36806729 | None:intergenic | 30.0% | |
| CCTAAGTATCAAATTCTTCA+AGG | + | chr5_1:36806707-36806726 | Msa0729490:CDS | 30.0% | |
| ! | AACTTTTGTACTCAGATTCT+AGG | + | chr5_1:36806732-36806751 | Msa0729490:CDS | 30.0% |
| ACTACTAACTACTACACTCT+TGG | - | chr5_1:36803585-36803604 | None:intergenic | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5_1:36803730-36803749 | Msa0729490:CDS | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5_1:36803731-36803750 | Msa0729490:CDS | 35.0% | |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5_1:36803779-36803798 | None:intergenic | 35.0% |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5_1:36803952-36803971 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5_1:36804082-36804101 | Msa0729490:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5_1:36804170-36804189 | Msa0729490:CDS | 35.0% |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5_1:36804233-36804252 | Msa0729490:CDS | 35.0% | |
| TATCTTGACACCTATTCATC+AGG | + | chr5_1:36804455-36804474 | Msa0729490:intron | 35.0% | |
| TTGGGTCAGAATTCTCTAAT+TGG | - | chr5_1:36804683-36804702 | None:intergenic | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | - | chr5_1:36804851-36804870 | None:intergenic | 35.0% | |
| AACAAAAGAGGGGCAAAAAT+AGG | + | chr5_1:36805682-36805701 | Msa0729490:intron | 35.0% | |
| TTTGAGTATGCGAGATTATG+CGG | + | chr5_1:36805814-36805833 | Msa0729490:intron | 35.0% | |
| !!! | TTAAGCTATTTTGGTACGGT+TGG | + | chr5_1:36805849-36805868 | Msa0729490:intron | 35.0% |
| TGGTTAGAGTTTAACTCAGT+TGG | + | chr5_1:36806196-36806215 | Msa0729490:intron | 35.0% | |
| TTAGAGTTTAACTCAGTTGG+TGG | + | chr5_1:36806199-36806218 | Msa0729490:intron | 35.0% | |
| TAGAGTTTAACTCAGTTGGT+GGG | + | chr5_1:36806200-36806219 | Msa0729490:intron | 35.0% | |
| AATCCAGACACTACAAAGAT+TGG | + | chr5_1:36806256-36806275 | Msa0729490:intron | 35.0% | |
| TAACCAATCTTTGTAGTGTC+TGG | - | chr5_1:36806262-36806281 | None:intergenic | 35.0% | |
| ATTGTATTGCAGTGGCTAAT+AGG | + | chr5_1:36806434-36806453 | Msa0729490:intron | 35.0% | |
| TTACCATGGCATGTATTTCT+TGG | + | chr5_1:36806509-36806528 | Msa0729490:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5_1:36806639-36806658 | None:intergenic | 35.0% | |
| CTAACTACTACACTCTTGGA+TGG | - | chr5_1:36803581-36803600 | None:intergenic | 40.0% | |
| AAAAGCAAAGGGAGTAGTGA+GGG | - | chr5_1:36803684-36803703 | None:intergenic | 40.0% | |
| AAAAAGCAAAGGGAGTAGTG+AGG | - | chr5_1:36803685-36803704 | None:intergenic | 40.0% | |
| CTCTCGCAAGAAAAAGCAAA+GGG | - | chr5_1:36803695-36803714 | None:intergenic | 40.0% | |
| ACTCTCGCAAGAAAAAGCAA+AGG | - | chr5_1:36803696-36803715 | None:intergenic | 40.0% | |
| ! | CTTTTTCTTGCGAGAGTTTG+TGG | + | chr5_1:36803699-36803718 | Msa0729490:CDS | 40.0% |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5_1:36803785-36803804 | Msa0729490:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5_1:36803789-36803808 | None:intergenic | 40.0% | |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5_1:36804093-36804112 | Msa0729490:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5_1:36804142-36804161 | Msa0729490:CDS | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5_1:36804143-36804162 | Msa0729490:CDS | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5_1:36804144-36804163 | Msa0729490:CDS | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5_1:36804169-36804188 | Msa0729490:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5_1:36804176-36804195 | Msa0729490:CDS | 40.0% |
| CCACAATCCCATCATTTACT+TGG | - | chr5_1:36804210-36804229 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5_1:36804207-36804226 | Msa0729490:CDS | 40.0% |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5_1:36804238-36804257 | Msa0729490:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5_1:36804246-36804265 | None:intergenic | 40.0% | |
| !! | TGAATGATTGATGACGACCT+CGG | + | chr5_1:36804621-36804640 | Msa0729490:intron | 40.0% |
| TAAATTGGAAAGTAGGTCCG+AGG | - | chr5_1:36804641-36804660 | None:intergenic | 40.0% | |
| AGAGAATTCTGACCCAAAGA+AGG | + | chr5_1:36804686-36804705 | Msa0729490:intron | 40.0% | |
| ACAAGACGAATGCTTCTGTT+GGG | - | chr5_1:36804725-36804744 | None:intergenic | 40.0% | |
| AACAAGACGAATGCTTCTGT+TGG | - | chr5_1:36804726-36804745 | None:intergenic | 40.0% | |
| ! | AGAGTTTAACTCAGTTGGTG+GGG | + | chr5_1:36806201-36806220 | Msa0729490:intron | 40.0% |
| AAATGCGAACAGTGAGGATA+AGG | + | chr5_1:36806483-36806502 | Msa0729490:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCA+TGG | + | chr5_1:36806495-36806514 | Msa0729490:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5_1:36806529-36806548 | Msa0729490:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5_1:36806535-36806554 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5_1:36806541-36806560 | Msa0729490:CDS | 40.0% |
| CCAGAATAACAAAGCCACTA+AGG | - | chr5_1:36806676-36806695 | None:intergenic | 40.0% | |
| !! | CCTTAGTGGCTTTGTTATTC+TGG | + | chr5_1:36806673-36806692 | Msa0729490:CDS | 40.0% |
| TGGTCACAAGCGAATTAAGA+TGG | + | chr5_1:36806837-36806856 | Msa0729490:three_prime_UTR | 40.0% | |
| GTGAGTGAGTGACTAGTGAA+AGG | + | chr5_1:36803603-36803622 | Msa0729490:five_prime_UTR | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5_1:36803801-36803820 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | - | chr5_1:36803926-36803945 | None:intergenic | 45.0% | |
| GGTCAAGGGGTTGAAGAAAT+CGG | + | chr5_1:36804123-36804142 | Msa0729490:CDS | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5_1:36804147-36804166 | Msa0729490:CDS | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5_1:36804237-36804256 | Msa0729490:CDS | 45.0% | |
| !! | TGTATCACTCTTTGGAGCTC+AGG | + | chr5_1:36804270-36804289 | Msa0729490:CDS | 45.0% |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5_1:36806458-36806477 | Msa0729490:CDS | 45.0% |
| TCACTGTTCGCATTTCTCCT+CGG | - | chr5_1:36806478-36806497 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+TGG | - | chr5_1:36806515-36806534 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCTCCTTAG+TGG | + | chr5_1:36806659-36806678 | Msa0729490:CDS | 45.0% | |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr5_1:36804897-36804916 | None:intergenic | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr5_1:36804898-36804917 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+AGG | - | chr5_1:36804971-36804990 | None:intergenic | 5.0% |
| !!! | TATAATATTTTGAATTTTTT+TGG | + | chr5_1:36805094-36805113 | Msa0729490:intron | 5.0% |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5_1:36803673-36803692 | None:intergenic | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5_1:36803922-36803941 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5_1:36803920-36803939 | Msa0729490:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5_1:36804101-36804120 | Msa0729490:intron | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5_1:36804102-36804121 | Msa0729490:intron | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5_1:36804108-36804127 | Msa0729490:intron | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5_1:36804109-36804128 | Msa0729490:intron | 50.0% | |
| TTTCTTCAACCCCTTGACCC+AGG | - | chr5_1:36804122-36804141 | None:intergenic | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5_1:36804161-36804180 | Msa0729490:CDS | 50.0% |
| GAGGAGAAATGCGAACAGTG+AGG | + | chr5_1:36806477-36806496 | Msa0729490:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5_1:36806621-36806640 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5_1:36806619-36806638 | Msa0729490:CDS | 50.0% |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5_1:36803913-36803932 | Msa0729490:intron | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5_1:36804110-36804129 | Msa0729490:intron | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5_1:36804160-36804179 | Msa0729490:CDS | 55.0% |
| GCAGTAGCAACGGCTGAAAC+TGG | + | chr5_1:36806551-36806570 | Msa0729490:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 36803570 | 36806873 | 36803570 | ID=Msa0729490;Name=Msa0729490 |
| chr5_1 | mRNA | 36803570 | 36806873 | 36803570 | ID=Msa0729490-mRNA-1;Parent=Msa0729490;Name=Msa0729490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=96|0.75|0.6|1|0.5|0.6|5|104|239 |
| chr5_1 | exon | 36803570 | 36803821 | 36803570 | ID=Msa0729490-mRNA-1:exon:11191;Parent=Msa0729490-mRNA-1 |
| chr5_1 | exon | 36803914 | 36803965 | 36803914 | ID=Msa0729490-mRNA-1:exon:11192;Parent=Msa0729490-mRNA-1 |
| chr5_1 | exon | 36804096 | 36804103 | 36804096 | ID=Msa0729490-mRNA-1:exon:11193;Parent=Msa0729490-mRNA-1 |
| chr5_1 | exon | 36804112 | 36804291 | 36804112 | ID=Msa0729490-mRNA-1:exon:11194;Parent=Msa0729490-mRNA-1 |
| chr5_1 | exon | 36806446 | 36806873 | 36806446 | ID=Msa0729490-mRNA-1:exon:11195;Parent=Msa0729490-mRNA-1 |
| chr5_1 | five_prime_UTR | 36803570 | 36803665 | 36803570 | ID=Msa0729490-mRNA-1:five_prime_utr;Parent=Msa0729490-mRNA-1 |
| chr5_1 | CDS | 36803666 | 36803821 | 36803666 | ID=Msa0729490-mRNA-1:cds;Parent=Msa0729490-mRNA-1 |
| chr5_1 | CDS | 36803914 | 36803965 | 36803914 | ID=Msa0729490-mRNA-1:cds;Parent=Msa0729490-mRNA-1 |
| chr5_1 | CDS | 36804096 | 36804103 | 36804096 | ID=Msa0729490-mRNA-1:cds;Parent=Msa0729490-mRNA-1 |
| chr5_1 | CDS | 36804112 | 36804291 | 36804112 | ID=Msa0729490-mRNA-1:cds;Parent=Msa0729490-mRNA-1 |
| chr5_1 | CDS | 36806446 | 36806769 | 36806446 | ID=Msa0729490-mRNA-1:cds;Parent=Msa0729490-mRNA-1 |
| chr5_1 | three_prime_UTR | 36806770 | 36806873 | 36806770 | ID=Msa0729490-mRNA-1:three_prime_utr;Parent=Msa0729490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
