AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756490 MtrunA17_Chr5g0401431 97.256 328 9 0 1 328 1 328 0.0 660
Msa0756490 MtrunA17_Chr4g0053871 71.341 328 89 1 1 328 1 323 9.18e-180 499
Msa0756490 MtrunA17_Chr4g0072091 67.442 301 95 2 26 326 23 320 3.39e-152 430
Msa0756490 MtrunA17_Chr1g0148021 61.321 318 119 3 12 328 13 327 5.09e-143 407
Msa0756490 MtrunA17_Chr7g0225221 58.621 319 125 3 8 326 6 317 1.74e-129 372
Msa0756490 MtrunA17_Chr8g0364291 44.099 322 176 3 6 325 1 320 2.14e-90 273
Msa0756490 MtrunA17_Chr6g0451571 42.679 321 178 4 10 328 17 333 2.47e-85 260
Msa0756490 MtrunA17_Chr3g0128061 42.947 319 178 3 11 328 10 325 2.66e-84 257
Msa0756490 MtrunA17_Chr1g0197411 41.640 317 178 4 14 325 12 326 1.06e-82 253
Msa0756490 MtrunA17_Chr4g0046131 42.484 306 170 4 26 327 41 344 4.15e-81 250
Msa0756490 MtrunA17_Chr1g0204011 41.641 329 177 8 2 328 6 321 2.27e-79 244
Msa0756490 MtrunA17_Chr2g0292211 41.141 333 187 5 1 328 12 340 1.47e-78 244
Msa0756490 MtrunA17_Chr5g0405991 41.846 325 174 7 7 328 3 315 3.56e-78 241
Msa0756490 MtrunA17_Chr2g0292271 41.456 316 179 4 16 328 17 329 7.67e-78 242
Msa0756490 MtrunA17_Chr2g0292241 41.141 333 187 5 1 328 1 329 2.56e-77 240
Msa0756490 MtrunA17_Chr2g0292261 40.841 333 188 5 1 328 1 329 3.04e-77 240
Msa0756490 MtrunA17_Chr1g0157051 40.557 323 178 7 8 328 7 317 1.07e-76 238
Msa0756490 MtrunA17_Chr8g0371381 42.857 308 163 5 23 328 22 318 1.55e-76 237
Msa0756490 MtrunA17_Chr1g0188431 39.521 334 182 7 1 328 7 326 5.22e-75 233
Msa0756490 MtrunA17_Chr2g0322861 40.694 317 181 5 14 328 74 385 4.74e-74 233
Msa0756490 MtrunA17_Chr2g0292181 39.157 332 195 4 1 328 10 338 4.79e-74 232
Msa0756490 MtrunA17_Chr2g0320061 38.906 329 188 5 1 328 1 317 1.52e-73 229
Msa0756490 MtrunA17_Chr2g0292151 39.339 333 193 6 1 328 1 329 2.83e-73 230
Msa0756490 MtrunA17_Chr4g0024121 40.752 319 184 2 11 328 11 325 3.08e-73 229
Msa0756490 MtrunA17_Chr2g0320051 39.210 329 187 5 1 328 1 317 5.22e-73 228
Msa0756490 MtrunA17_Chr2g0320091 40.248 323 175 7 12 328 7 317 5.95e-73 228
Msa0756490 MtrunA17_Chr7g0268501 40.979 327 183 7 3 328 2 319 1.65e-72 227
Msa0756490 MtrunA17_Chr7g0268521 40.979 327 183 7 3 328 2 319 1.65e-72 227
Msa0756490 MtrunA17_Chr2g0292251 41.100 309 175 4 23 328 24 328 5.71e-72 227
Msa0756490 MtrunA17_Chr2g0292111 38.438 333 196 6 1 328 1 329 8.42e-72 226
Msa0756490 MtrunA17_Chr2g0299691 37.846 325 190 6 10 328 39 357 1.44e-71 226
Msa0756490 MtrunA17_Chr2g0291751 39.640 333 192 6 1 328 1 329 1.54e-71 226
Msa0756490 MtrunA17_Chr4g0063671 40.673 327 177 7 7 326 1 317 1.90e-71 224
Msa0756490 MtrunA17_Chr4g0070951 39.009 323 188 4 10 328 11 328 3.13e-71 224
Msa0756490 MtrunA17_Chr2g0320071 38.245 319 186 4 11 328 8 316 3.66e-71 223
Msa0756490 MtrunA17_Chr1g0194151 39.645 338 188 8 1 328 1 332 1.41e-70 222
Msa0756490 MtrunA17_Chr7g0258811 39.319 323 184 6 7 325 53 367 1.84e-70 223
Msa0756490 MtrunA17_Chr2g0320101 38.438 320 184 4 12 328 7 316 1.87e-70 221
Msa0756490 MtrunA17_Chr8g0372601 39.297 313 182 4 21 328 20 329 5.37e-70 221
Msa0756490 MtrunA17_Chr3g0129051 38.485 330 186 7 1 325 1 318 1.12e-69 219
Msa0756490 MtrunA17_Chr2g0292091 38.438 333 191 8 1 328 1 324 3.15e-69 219
Msa0756490 MtrunA17_Chr7g0244461 37.500 328 188 5 1 328 1 311 4.58e-69 218
Msa0756490 MtrunA17_Chr4g0076211 39.799 299 168 6 31 328 45 332 5.29e-69 218
Msa0756490 MtrunA17_Chr1g0194271 39.420 345 186 8 1 328 1 339 6.90e-69 218
Msa0756490 MtrunA17_Chr2g0292291 40.120 334 188 8 2 328 3 331 1.50e-68 218
Msa0756490 MtrunA17_Chr2g0292101 37.764 331 197 5 1 328 1 325 1.84e-68 217
Msa0756490 MtrunA17_Chr7g0244451 38.344 326 189 4 4 328 1 315 4.27e-68 215
Msa0756490 MtrunA17_Chr4g0013821 37.255 306 186 4 23 328 24 323 5.62e-68 216
Msa0756490 MtrunA17_Chr7g0254201 39.604 303 173 5 25 327 18 310 6.18e-68 215
Msa0756490 MtrunA17_Chr5g0404721 39.867 301 175 4 30 328 33 329 1.33e-67 214
Msa0756490 MtrunA17_Chr1g0175561 37.421 318 192 5 11 325 9 322 1.52e-67 214
Msa0756490 MtrunA17_Chr1g0164891 40.461 304 168 8 32 328 94 391 2.53e-67 216
Msa0756490 MtrunA17_Chr4g0013201 38.636 308 177 5 22 328 41 337 5.50e-66 211
Msa0756490 MtrunA17_Chr4g0013171 36.335 322 186 6 13 325 6 317 8.01e-66 210
Msa0756490 MtrunA17_Chr4g0013721 38.047 297 178 4 32 328 105 395 9.08e-66 213
Msa0756490 MtrunA17_Chr2g0279041 35.168 327 199 6 5 326 4 322 2.34e-65 209
Msa0756490 MtrunA17_Chr6g0467121 39.091 330 180 8 6 328 47 362 4.36e-65 210
Msa0756490 MtrunA17_Chr5g0402581 34.783 322 203 5 9 328 9 325 5.41e-65 208
Msa0756490 MtrunA17_Chr5g0402571 35.276 326 197 7 6 328 11 325 1.24e-64 207
Msa0756490 MtrunA17_Chr2g0320031 36.923 325 192 6 7 328 4 318 1.81e-64 206
Msa0756490 MtrunA17_Chr5g0432441 37.846 325 182 8 7 325 12 322 3.44e-64 206
Msa0756490 MtrunA17_Chr6g0477071 37.117 326 185 6 8 328 31 341 3.75e-64 206
Msa0756490 MtrunA17_Chr7g0254231 40.404 297 162 6 32 327 27 309 7.46e-64 204
Msa0756490 MtrunA17_Chr5g0438021 37.037 324 188 6 5 325 11 321 1.38e-63 204
Msa0756490 MtrunA17_Chr2g0296621 37.954 303 175 7 27 328 50 340 1.48e-63 204
Msa0756490 MtrunA17_Chr3g0129061 38.066 331 186 7 1 325 1 318 3.24e-63 203
Msa0756490 MtrunA17_Chr3g0106921 37.846 325 178 8 6 325 11 316 3.97e-63 203
Msa0756490 MtrunA17_Chr3g0114451 37.072 321 192 3 8 328 7 317 4.13e-63 202
Msa0756490 MtrunA17_Chr4g0038171 37.695 321 187 5 12 328 9 320 5.45e-63 202
Msa0756490 MtrunA17_Chr3g0136751 35.671 328 200 5 1 326 1 319 1.08e-62 202
Msa0756490 MtrunA17_Chr4g0043391 37.304 319 187 5 14 328 14 323 3.58e-62 201
Msa0756490 MtrunA17_Chr4g0038161 35.385 325 196 5 8 328 5 319 4.05e-62 200
Msa0756490 MtrunA17_Chr6g0467161 35.258 329 196 6 6 328 18 335 7.53e-62 200
Msa0756490 MtrunA17_Chr4g0013181 36.700 297 178 4 30 325 62 349 1.24e-61 200
Msa0756490 MtrunA17_Chr2g0278671 37.742 310 178 7 23 326 20 320 2.68e-61 198
Msa0756490 MtrunA17_Chr4g0038151 35.474 327 196 6 6 328 5 320 7.18e-61 197
Msa0756490 MtrunA17_Chr3g0129041 38.066 331 186 7 1 325 1 318 1.39e-60 196
Msa0756490 MtrunA17_Chr4g0013191 38.176 296 169 6 36 328 55 339 1.11e-59 194
Msa0756490 MtrunA17_Chr4g0068621 35.599 309 189 7 23 328 34 335 1.28e-59 194
Msa0756490 MtrunA17_Chr6g0467251 36.810 326 188 6 7 325 10 324 2.22e-59 194
Msa0756490 MtrunA17_Chr5g0432351 37.082 329 188 8 2 325 3 317 2.80e-59 193
Msa0756490 MtrunA17_Chr6g0460711 36.957 322 191 6 4 325 1 310 1.14e-58 191
Msa0756490 MtrunA17_Chr5g0432341 36.170 329 191 8 2 325 3 317 1.81e-57 188
Msa0756490 MtrunA17_Chr5g0400331 35.737 319 192 5 18 328 17 330 2.90e-57 188
Msa0756490 MtrunA17_Chr3g0107881 36.890 328 187 8 6 328 11 323 4.74e-57 187
Msa0756490 MtrunA17_Chr1g0213061 37.346 324 183 9 13 328 9 320 6.14e-57 187
Msa0756490 MtrunA17_Chr5g0432331 36.170 329 191 8 2 325 34 348 9.05e-57 187
Msa0756490 MtrunA17_Chr1g0155611 35.880 301 188 3 27 325 46 343 9.29e-56 184
Msa0756490 MtrunA17_Chr7g0224371 33.846 325 202 7 6 328 8 321 3.45e-55 182
Msa0756490 MtrunA17_Chr2g0329641 33.657 309 184 5 26 325 35 331 5.60e-55 182
Msa0756490 MtrunA17_Chr4g0075241 32.219 329 210 6 4 325 1 323 1.06e-54 181
Msa0756490 MtrunA17_Chr2g0316791 31.737 334 192 6 25 326 74 403 1.39e-53 181
Msa0756490 MtrunA17_Chr3g0106901 35.404 322 193 5 5 325 12 319 3.14e-53 177
Msa0756490 MtrunA17_Chr2g0316481 32.335 334 190 6 25 326 74 403 3.97e-53 179
Msa0756490 MtrunA17_Chr2g0316831 31.437 334 193 7 25 326 110 439 6.74e-51 174
Msa0756490 MtrunA17_Chr2g0316191 30.746 335 195 6 25 326 74 404 7.16e-51 174
Msa0756490 MtrunA17_Chr5g0421411 35.714 280 160 9 60 328 14 284 1.03e-50 170
Msa0756490 MtrunA17_Chr2g0279061 36.154 260 154 5 71 326 12 263 1.16e-50 169
Msa0756490 MtrunA17_Chr1g0181511 35.179 307 187 5 25 328 25 322 9.03e-50 168
Msa0756490 MtrunA17_Chr4g0074851 33.882 304 189 5 27 327 32 326 2.18e-49 167
Msa0756490 MtrunA17_Chr1g0181481 35.505 307 186 5 25 328 25 322 2.70e-49 167
Msa0756490 MtrunA17_Chr2g0311251 31.953 338 189 8 25 328 9 339 9.77e-49 166
Msa0756490 MtrunA17_Chr1g0181431 35.048 311 182 6 25 328 25 322 1.60e-48 165
Msa0756490 MtrunA17_Chr2g0311241 29.351 385 194 7 17 328 50 429 2.24e-48 167
Msa0756490 MtrunA17_Chr5g0413051 33.010 309 193 7 25 325 71 373 1.76e-47 164
Msa0756490 MtrunA17_Chr2g0292281 40.865 208 111 3 123 328 18 215 8.06e-44 150
Msa0756490 MtrunA17_Chr4g0004591 30.124 322 162 4 27 328 77 355 2.69e-42 149
Msa0756490 MtrunA17_Chr5g0432401 31.173 324 168 8 7 325 9 282 1.73e-40 143
Msa0756490 MtrunA17_Chr2g0316811 33.913 230 131 5 25 237 48 273 1.93e-36 134
Msa0756490 MtrunA17_Chr3g0114461 38.265 196 112 4 131 325 1 188 1.14e-34 125
Msa0756490 MtrunA17_Chr2g0316141 28.571 287 150 7 73 326 11 275 3.14e-27 108
Msa0756490 MtrunA17_Chr2g0316181 28.571 287 150 7 73 326 11 275 3.14e-27 108
Msa0756490 MtrunA17_Chr7g0254181 45.283 106 48 4 102 202 33 133 2.50e-19 83.6
Msa0756490 MtrunA17_Chr1g0181501 32.812 192 118 4 141 328 4 188 3.49e-19 84.0
Msa0756490 MtrunA17_Chr5g0432321 36.496 137 73 3 144 274 4 132 4.66e-19 82.0
Msa0756490 MtrunA17_Chr3g0114491 40.179 112 64 2 26 137 17 125 5.42e-17 76.6
Msa0756490 MtrunA17_Chr3g0137751 32.584 178 92 7 47 212 92 253 4.49e-16 77.8
Msa0756490 MtrunA17_Chr1g0181491 37.391 115 67 3 25 139 10 119 2.25e-15 72.4
Msa0756490 MtrunA17_Chr4g0013811 41.096 73 43 0 141 213 6 78 1.78e-14 67.8
Msa0756490 MtrunA17_Chr3g0104101 30.282 142 90 6 194 328 9 148 5.91e-14 68.6
Msa0756490 MtrunA17_Chr7g0268491 39.583 96 56 2 233 328 3 96 3.53e-13 64.7
Msa0756490 MtrunA17_Chr1g0196191 50.000 70 31 2 69 138 27 92 1.00e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756490 AT3G49960.1 62.769 325 121 0 1 325 1 325 2.19e-153 433
Msa0756490 AT4G37530.1 66.337 303 102 0 23 325 23 325 2.67e-153 433
Msa0756490 AT5G67400.1 62.154 325 123 0 1 325 1 325 7.04e-152 429
Msa0756490 AT4G37520.1 64.784 301 106 0 25 325 25 325 4.16e-150 425
Msa0756490 AT4G30170.1 63.158 304 108 1 25 328 25 324 4.12e-148 420
Msa0756490 AT4G37520.2 64.452 301 104 1 25 325 25 322 5.89e-147 417
Msa0756490 AT2G18980.1 61.635 318 118 1 11 328 9 322 1.34e-146 416
Msa0756490 AT4G37530.2 68.462 260 82 0 23 282 23 282 2.23e-135 386
Msa0756490 AT5G14130.1 55.000 320 140 3 7 326 12 327 7.51e-120 348
Msa0756490 AT5G14130.2 55.000 320 140 3 7 326 53 368 2.27e-119 348
Msa0756490 AT4G17690.1 45.307 309 160 4 18 325 18 318 2.17e-94 283
Msa0756490 AT5G47000.1 46.026 302 156 3 25 325 31 326 1.23e-89 271
Msa0756490 AT2G34060.1 44.156 308 166 4 24 327 39 344 1.67e-87 266
Msa0756490 AT5G40150.1 46.078 306 157 4 24 328 29 327 2.52e-86 263
Msa0756490 AT3G28200.1 41.883 308 166 4 24 328 18 315 4.85e-82 251
Msa0756490 AT5G51890.1 40.867 323 181 7 8 328 7 321 1.30e-78 243
Msa0756490 AT3G21770.1 42.857 308 167 6 23 327 25 326 1.32e-78 243
Msa0756490 AT5G42180.1 42.284 324 174 8 4 325 1 313 1.64e-78 243
Msa0756490 AT1G05260.1 41.463 328 183 6 4 327 1 323 1.88e-78 243
Msa0756490 AT1G24110.1 41.456 316 181 3 11 325 6 318 4.23e-78 242
Msa0756490 AT5G06730.1 39.077 325 186 4 6 328 19 333 1.58e-74 234
Msa0756490 AT1G71695.1 39.640 333 180 6 6 326 13 336 1.06e-73 231
Msa0756490 AT3G49120.1 39.264 326 188 5 10 328 12 334 3.18e-72 228
Msa0756490 AT3G01190.1 39.571 326 187 7 1 325 1 317 4.12e-72 226
Msa0756490 AT3G49110.1 39.877 326 186 5 10 328 13 335 1.56e-71 226
Msa0756490 AT4G11290.1 38.671 331 194 6 1 328 1 325 2.24e-71 224
Msa0756490 AT3G03670.1 37.736 318 187 5 11 325 8 317 2.61e-71 224
Msa0756490 AT3G32980.1 39.264 326 188 5 10 328 11 333 2.75e-71 225
Msa0756490 AT5G19880.1 37.888 322 192 5 9 325 7 325 1.12e-69 220
Msa0756490 AT5G15180.1 36.826 334 199 7 1 328 1 328 2.67e-69 219
Msa0756490 AT2G38380.1 37.695 321 194 4 11 328 15 332 2.96e-69 220
Msa0756490 AT5G06720.1 39.542 306 178 5 23 325 28 329 3.78e-69 219
Msa0756490 AT2G18140.1 39.597 298 176 3 32 328 40 334 4.81e-69 219
Msa0756490 AT4G08780.1 40.968 310 176 4 23 328 20 326 4.97e-69 219
Msa0756490 AT4G36430.1 38.245 319 193 3 11 328 14 329 5.02e-69 219
Msa0756490 AT4G08770.1 40.645 310 177 4 23 328 20 326 5.66e-69 219
Msa0756490 AT4G31760.1 39.506 324 180 6 11 328 12 325 7.36e-69 218
Msa0756490 AT2G38390.1 37.383 321 195 4 11 328 15 332 2.22e-68 218
Msa0756490 AT5G17820.1 38.006 321 179 6 5 325 9 309 2.30e-68 216
Msa0756490 AT2G18150.1 39.262 298 177 3 32 328 41 335 7.73e-68 216
Msa0756490 AT5G17820.2 38.978 313 178 5 13 325 63 362 1.00e-67 216
Msa0756490 AT2G22420.1 37.231 325 197 5 4 328 1 318 1.85e-67 214
Msa0756490 AT4G33420.1 38.226 327 184 7 6 328 12 324 3.70e-67 214
Msa0756490 AT1G05240.1 39.604 303 174 5 27 326 26 322 6.21e-67 213
Msa0756490 AT1G05250.1 39.604 303 174 5 27 326 26 322 6.21e-67 213
Msa0756490 AT4G33420.2 38.226 327 184 7 6 328 59 371 1.94e-66 213
Msa0756490 AT5G64120.1 38.384 297 174 5 32 328 40 327 4.00e-66 211
Msa0756490 AT1G14540.1 36.533 323 190 5 7 328 6 314 4.71e-66 211
Msa0756490 AT5G19890.1 38.272 324 187 6 9 328 12 326 5.71e-66 211
Msa0756490 AT4G16270.1 39.333 300 172 8 32 328 55 347 2.89e-65 209
Msa0756490 AT2G41480.1 37.231 325 191 5 9 328 11 327 3.72e-64 206
Msa0756490 AT5G66390.1 39.189 296 174 4 32 325 38 329 5.66e-64 206
Msa0756490 AT5G05340.1 38.361 305 174 5 24 325 27 320 7.36e-64 205
Msa0756490 AT2G39040.1 38.782 312 179 7 24 328 43 349 9.50e-64 206
Msa0756490 AT3G50990.1 35.474 327 206 4 1 325 14 337 1.80e-63 205
Msa0756490 AT2G24800.1 37.419 310 178 6 25 328 29 328 5.40e-63 203
Msa0756490 AT5G58400.1 38.080 323 181 8 8 325 13 321 1.62e-62 202
Msa0756490 AT1G34510.1 37.152 323 184 7 4 325 1 305 1.72e-62 201
Msa0756490 AT5G64110.1 36.223 323 191 6 12 328 16 329 1.93e-62 202
Msa0756490 AT1G77100.1 37.195 328 187 8 6 326 1 316 4.88e-62 200
Msa0756490 AT5G39580.1 36.923 325 192 9 8 328 3 318 6.05e-62 200
Msa0756490 AT1G49570.1 34.018 341 201 7 4 325 11 346 6.60e-62 201
Msa0756490 AT1G14550.1 36.061 330 199 6 1 328 1 320 7.52e-62 200
Msa0756490 AT4G33870.1 32.840 338 188 5 24 326 65 398 1.22e-60 199
Msa0756490 AT4G26010.1 35.514 321 189 7 8 327 4 307 2.48e-60 196
Msa0756490 AT1G30870.1 38.312 308 176 7 22 326 46 342 2.80e-60 197
Msa0756490 AT4G26010.2 35.714 322 187 8 8 327 32 335 4.30e-60 196
Msa0756490 AT1G44970.1 36.482 307 190 3 24 328 42 345 3.56e-59 194
Msa0756490 AT2G43480.1 33.762 311 190 6 22 325 30 331 9.49e-58 190
Msa0756490 AT5G58390.1 38.154 325 183 8 6 325 1 312 1.18e-57 189
Msa0756490 AT5G22410.1 34.259 324 196 9 7 325 10 321 1.38e-56 187
Msa0756490 AT5G24070.1 34.951 309 185 6 26 327 34 333 4.49e-56 186
Msa0756490 AT5G64100.1 35.333 300 180 6 32 328 42 330 1.36e-55 184
Msa0756490 AT4G25980.1 34.091 308 189 5 25 326 24 323 6.12e-55 182
Msa0756490 AT2G35380.1 34.441 331 202 7 9 328 8 334 3.93e-53 178
Msa0756490 AT1G68850.1 31.361 338 214 10 4 328 2 334 8.12e-52 174
Msa0756490 AT4G21960.1 32.776 299 189 5 32 327 36 325 2.11e-48 165
Msa0756490 AT2G37130.1 33.657 309 192 6 24 328 27 326 1.82e-47 163
Msa0756490 AT2G37130.2 33.993 303 187 6 30 328 2 295 4.77e-47 161
Msa0756490 AT3G17070.1 32.680 306 191 6 27 325 38 335 9.34e-46 159
Msa0756490 AT2G35380.2 35.897 234 140 5 102 328 16 246 9.51e-38 135
Msa0756490 AT2G24800.2 38.012 171 99 3 25 195 29 192 2.88e-31 118
Msa0756490 AT3G17070.2 30.303 264 168 7 69 325 18 272 1.36e-30 117
Msa0756490 AT4G25980.2 38.202 178 101 4 25 201 69 238 3.63e-28 110
Msa0756490 AT5G39580.2 40.719 167 91 5 32 198 30 188 4.14e-28 109
Msa0756490 AT4G32320.1 28.421 285 157 12 1 267 68 323 9.87e-18 83.2

Find 89 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGTGGTGTCTACTTAAT+TGG 0.165416 5_2:-10788043 None:intergenic
TCAAAGGCATGTGGAGTAAT+TGG 0.184890 5_2:-10790421 None:intergenic
TGCATTCCAATAATATAATT+TGG 0.188636 5_2:-10790706 None:intergenic
ATGATGCCAAATTATATTAT+TGG 0.201224 5_2:+10790700 Msa0756490:three_prime_UTR
ACAGAAATGATTGCACTTTC+AGG 0.236725 5_2:+10789036 Msa0756490:CDS
TCTAAAGATTCTGATGTAAA+TGG 0.264360 5_2:+10788943 Msa0756490:CDS
CCAGCCAATGAAAGATTATC+AGG 0.272485 5_2:-10788346 None:intergenic
TGTTGCTGCCATGACCAAAT+TGG 0.291402 5_2:+10790576 Msa0756490:CDS
CTTCCATGACTGCTTTGTTC+AGG 0.296230 5_2:+10788163 Msa0756490:CDS
GACACCAACTCTACCCAATT+TGG 0.305325 5_2:-10790590 None:intergenic
AGCTTAATCTTATACTTGTT+TGG 0.314208 5_2:+10787976 Msa0756490:CDS
ACCATACTATGAGGTAGAAT+TGG 0.315906 5_2:+10788900 Msa0756490:CDS
TCCAAGGGTTGCAGTTGATA+TGG 0.330440 5_2:+10790396 Msa0756490:CDS
CTTGAAATTGTACACTCTAT+TGG 0.334476 5_2:-10790296 None:intergenic
CAGCACAAGAAACTTTATTC+TGG 0.336699 5_2:-10788426 None:intergenic
AACAGCATCCACAGCTGCTT+TGG 0.345598 5_2:-10788395 None:intergenic
TGTACTTACGGAATATAATA+AGG 0.380746 5_2:-10790772 None:intergenic
CCCAATTCTACCTCATAGTA+TGG 0.385461 5_2:-10788901 None:intergenic
AAAAGCATTTACTGCAGCTT+TGG 0.387024 5_2:-10790521 None:intergenic
GTAGAATTGGGAAGATTTGA+TGG 0.400406 5_2:+10788913 Msa0756490:CDS
ATATGGAATGTGAAATTGTC+GGG 0.416625 5_2:-10787823 None:intergenic
TCACCCTGATAATCTTTCAT+TGG 0.428396 5_2:+10788342 Msa0756490:CDS
CCTGATAATCTTTCATTGGC+TGG 0.430855 5_2:+10788346 Msa0756490:CDS
GTAGTGGTGTCTACTTAATT+GGG 0.434010 5_2:-10788042 None:intergenic
CAAAGGCATGTGGAGTAATT+GGG 0.442444 5_2:-10790420 None:intergenic
TGAAAAGATTCTAATCCAAC+TGG 0.445880 5_2:+10787792 Msa0756490:five_prime_UTR
TTGCAGAGGTAAAGTAAAGT+AGG 0.448695 5_2:-10787934 None:intergenic
ACCCTTGGATCCACATCCCT+TGG 0.454377 5_2:-10790382 None:intergenic
AATCTTTCATTGGCTGGAGA+TGG 0.460504 5_2:+10788352 Msa0756490:CDS
ATCAATGTGCCCAAGGGATG+TGG 0.460713 5_2:+10790372 Msa0756490:CDS
TTGTGCTGATATTCTAGCTA+TGG 0.463503 5_2:+10788441 Msa0756490:CDS
GTTTAAACAATGTATTAAGC+TGG 0.467335 5_2:-10788996 None:intergenic
CCATACTATGAGGTAGAATT+GGG 0.468056 5_2:+10788901 Msa0756490:CDS
TTGAATCCGTGAAGAGGACT+TGG 0.468682 5_2:-10790495 None:intergenic
TCCATATCAACTGCAACCCT+TGG 0.475393 5_2:-10790397 None:intergenic
CTATTTCAAGAATCTACAAA+AGG 0.475878 5_2:+10790450 Msa0756490:CDS
AGCTGGTTCAAGTTGAATCC+TGG 0.480998 5_2:-10788979 None:intergenic
GTTGCTGCCATGACCAAATT+GGG 0.483030 5_2:+10790577 Msa0756490:CDS
GCGTAGTGTAAGTCTAATGT+AGG 0.483647 5_2:-10790337 None:intergenic
CTCAGACCAAGTCCTCTTCA+CGG 0.486562 5_2:+10790489 Msa0756490:CDS
ATACATTGTTTAAACATCAC+GGG 0.490569 5_2:+10789004 Msa0756490:CDS
CAAGAATCTACAAAAGGGAA+AGG 0.501575 5_2:+10790456 Msa0756490:CDS
AAGAAGAGACGTAGAGTGGC+AGG 0.502656 5_2:-10788143 None:intergenic
CCCTTGGATCCACATCCCTT+GGG 0.505679 5_2:-10790381 None:intergenic
AAGAATCTACAAAAGGGAAA+GGG 0.508178 5_2:+10790457 Msa0756490:CDS
AATACATTGTTTAAACATCA+CGG 0.513218 5_2:+10789003 Msa0756490:CDS
GTGTCAAGAATTCACACAAT+GGG 0.518226 5_2:+10790608 Msa0756490:CDS
AACCCGTGATGTTATTGCAT+TGG 0.520448 5_2:+10788465 Msa0756490:CDS
TTCAAGTTGAATCCTGGCTC+AGG 0.520683 5_2:-10788973 None:intergenic
TTACCTGAACAAAGCAGTCA+TGG 0.532969 5_2:-10788166 None:intergenic
AATGGAAAACTTCCTGAGCC+AGG 0.533024 5_2:+10788961 Msa0756490:CDS
TCCCTCTCTGCTCTATTATG+TGG 0.534283 5_2:-10788319 None:intergenic
TCTGTAGGTGCTCACACCGT+TGG 0.536753 5_2:+10790250 Msa0756490:intron
GAAACTTTATTCTGGCAAAG+AGG 0.538555 5_2:-10788418 None:intergenic
GGTCATGGCAGCAACAAAGT+TGG 0.538768 5_2:-10790569 None:intergenic
CCAATTACACAGGGGTGTGA+TGG 0.539283 5_2:+10788274 Msa0756490:intron
AATTAAAATCAATGTGCCCA+AGG 0.543156 5_2:+10790365 Msa0756490:CDS
TATATGGAATGTGAAATTGT+CGG 0.543572 5_2:-10787824 None:intergenic
TAGAATTGGGAAGATTTGAT+GGG 0.544238 5_2:+10788914 Msa0756490:CDS
TATTTCAAGAATCTACAAAA+GGG 0.560775 5_2:+10790451 Msa0756490:CDS
AACCAATGCAATAACATCAC+GGG 0.563893 5_2:-10788467 None:intergenic
CTTGAAATAGACATTATCAA+AGG 0.566475 5_2:-10790437 None:intergenic
GCCCAAGGGATGTGGATCCA+AGG 0.566912 5_2:+10790380 Msa0756490:CDS
CATATCAAGTTAGAATGTTG+TGG 0.566972 5_2:+10790663 Msa0756490:three_prime_UTR
TGGATCTTGAATCCGTGAAG+AGG 0.581662 5_2:-10790501 None:intergenic
ACACAATGGGAACATTCGTA+CGG 0.590337 5_2:+10790621 Msa0756490:CDS
TTAGAATGTTGTGGTCCTTG+TGG 0.594211 5_2:+10790672 Msa0756490:three_prime_UTR
GCCACATAATAGAGCAGAGA+GGG 0.597026 5_2:+10788318 Msa0756490:CDS
CTACTTAATTGGGCATGAGT+AGG 0.598762 5_2:-10788032 None:intergenic
CCCAAGGGATGTGGATCCAA+GGG 0.601578 5_2:+10790381 Msa0756490:CDS
ATTAAAATCAATGTGCCCAA+GGG 0.604041 5_2:+10790366 Msa0756490:CDS
CGTGAAGAGGACTTGGTCTG+AGG 0.605078 5_2:-10790488 None:intergenic
TGTCGGGGTCACGAGCCAGT+TGG 0.605082 5_2:-10787807 None:intergenic
ATGACCAAATTGGGTAGAGT+TGG 0.605285 5_2:+10790586 Msa0756490:CDS
AAACCAATGCAATAACATCA+CGG 0.605408 5_2:-10788468 None:intergenic
TATACAAGCCAAAGCAGCTG+TGG 0.607386 5_2:+10788387 Msa0756490:CDS
AATTTGAATTTGCAGGCAGG+AGG 0.609634 5_2:+10788877 Msa0756490:intron
AACTCTACCCAATTTGGTCA+TGG 0.620775 5_2:-10790584 None:intergenic
GGCAGGAGGACCATACTATG+AGG 0.631628 5_2:+10788891 Msa0756490:intron
CGTAGTGTAAGTCTAATGTA+GGG 0.631745 5_2:-10790336 None:intergenic
CAGCCAATGAAAGATTATCA+GGG 0.640554 5_2:-10788345 None:intergenic
ATGGAAGAAGAGACGTAGAG+TGG 0.643216 5_2:-10788147 None:intergenic
TAGGACAAGAATTCTTGTAG+TGG 0.645111 5_2:-10788058 None:intergenic
TAGACATTATCAAAGGCATG+TGG 0.651893 5_2:-10790430 None:intergenic
GGTGTCAAGAATTCACACAA+TGG 0.671153 5_2:+10790607 Msa0756490:CDS
TATGGAATGTGAAATTGTCG+GGG 0.683790 5_2:-10787822 None:intergenic
GTTGCAATGTGAGAATCCAA+CGG 0.699363 5_2:-10790266 None:intergenic
TTGGCATCATGTCATCCACA+AGG 0.724780 5_2:-10790687 None:intergenic
CGCCACATAATAGAGCAGAG+AGG 0.791379 5_2:+10788317 Msa0756490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTAAAAATTAGATTGA+TGG + chr5_2:10788713-10788732 Msa0756490:intron 15.0%
!! TAGAAAAATAAAGATATTGA+AGG + chr5_2:10789652-10789671 Msa0756490:intron 15.0%
!! AGAAAAATAAAGATATTGAA+GGG + chr5_2:10789653-10789672 Msa0756490:intron 15.0%
!!! AACACTTTTTTTTAGAAAAT+GGG - chr5_2:10789998-10790017 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr5_2:10790067-10790086 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr5_2:10790068-10790087 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr5_2:10790132-10790151 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr5_2:10790133-10790152 None:intergenic 15.0%
!!! AGTCAAATTTTACTAGTATA+TGG - chr5_2:10787843-10787862 None:intergenic 20.0%
!!! TCAATTACATGCATTTTATT+TGG + chr5_2:10788195-10788214 Msa0756490:intron 20.0%
!! GAAAAGGTAACATTTATTTA+TGG - chr5_2:10788225-10788244 None:intergenic 20.0%
!! TGCACAATATAAATTAGAAA+AGG - chr5_2:10788241-10788260 None:intergenic 20.0%
!! TAGGATAATTAAAATAGTCA+CGG - chr5_2:10788617-10788636 None:intergenic 20.0%
!! TCTAATTATTAGAATAGACT+TGG + chr5_2:10788747-10788766 Msa0756490:intron 20.0%
!! AATACATTGTTTAAACATCA+CGG + chr5_2:10789003-10789022 Msa0756490:CDS 20.0%
!!! ACACTTTTCCAATTAATTAA+AGG + chr5_2:10789084-10789103 Msa0756490:intron 20.0%
!!! CACTTTTCCAATTAATTAAA+GGG + chr5_2:10789085-10789104 Msa0756490:intron 20.0%
!! TTCACAATATATCAAAGTTA+AGG - chr5_2:10789246-10789265 None:intergenic 20.0%
!!! TAAAGTTACTTTGTAGTATA+TGG - chr5_2:10789583-10789602 None:intergenic 20.0%
!! AGTAATCATTCTTAAAAAGT+TGG + chr5_2:10789733-10789752 Msa0756490:intron 20.0%
!! TCAAAAAAGTTGTCATTAAA+TGG - chr5_2:10789802-10789821 None:intergenic 20.0%
!! AATAAAAAGTGAAAAAACCA+AGG - chr5_2:10789828-10789847 None:intergenic 20.0%
!!! TTGGTTTTTTCACTTTTTAT+TGG + chr5_2:10789827-10789846 Msa0756490:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + chr5_2:10789840-10789859 Msa0756490:intron 20.0%
!!! GAACACTTTTTTTTAGAAAA+TGG - chr5_2:10789999-10790018 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr5_2:10790034-10790053 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr5_2:10790035-10790054 None:intergenic 20.0%
!! AAAAGTGGAATATATTGTAT+TGG - chr5_2:10790109-10790128 None:intergenic 20.0%
!! TATTTCAAGAATCTACAAAA+GGG + chr5_2:10790451-10790470 Msa0756490:CDS 20.0%
!! ATGATGCCAAATTATATTAT+TGG + chr5_2:10790700-10790719 Msa0756490:three_prime_UTR 20.0%
!! TGCATTCCAATAATATAATT+TGG - chr5_2:10790709-10790728 None:intergenic 20.0%
! TATATGGAATGTGAAATTGT+CGG - chr5_2:10787827-10787846 None:intergenic 25.0%
!!! ATTTGATGTTTTTTTTGCAG+AGG - chr5_2:10787951-10787970 None:intergenic 25.0%
! TCTGCAAAAAAAACATCAAA+TGG + chr5_2:10787950-10787969 Msa0756490:exon 25.0%
! AGCTTAATCTTATACTTGTT+TGG + chr5_2:10787976-10787995 Msa0756490:CDS 25.0%
! TTATGATATTCCAATTACAC+AGG + chr5_2:10788264-10788283 Msa0756490:intron 25.0%
! TATGATATTCCAATTACACA+GGG + chr5_2:10788265-10788284 Msa0756490:intron 25.0%
!!! CAAAGAAAGTTGATATCTTT+AGG - chr5_2:10788636-10788655 None:intergenic 25.0%
! TTACTCGTTATAATAGTGTT+TGG - chr5_2:10788796-10788815 None:intergenic 25.0%
!! ATTCAGTCTTATAACTAACT+AGG + chr5_2:10788833-10788852 Msa0756490:intron 25.0%
! AATGTGAAATTTGAATTTGC+AGG + chr5_2:10788870-10788889 Msa0756490:intron 25.0%
! TCTAAAGATTCTGATGTAAA+TGG + chr5_2:10788943-10788962 Msa0756490:CDS 25.0%
! GTTTAAACAATGTATTAAGC+TGG - chr5_2:10788999-10789018 None:intergenic 25.0%
! ATACATTGTTTAAACATCAC+GGG + chr5_2:10789004-10789023 Msa0756490:CDS 25.0%
!! CCTGTTTAAAATTATTTGAC+TGG - chr5_2:10789113-10789132 None:intergenic 25.0%
!! CCAGTCAAATAATTTTAAAC+AGG + chr5_2:10789110-10789129 Msa0756490:intron 25.0%
! ATCAAAGTTAAGGACAAATT+TGG - chr5_2:10789236-10789255 None:intergenic 25.0%
! TGTATAAATAAAGGGAAAAG+TGG - chr5_2:10790124-10790143 None:intergenic 25.0%
! CCAAAGTAGATCAATTATAT+CGG + chr5_2:10790167-10790186 Msa0756490:intron 25.0%
! CAAAGTAGATCAATTATATC+GGG + chr5_2:10790168-10790187 Msa0756490:intron 25.0%
! GGTAGTAATAGATAAAACTT+TGG + chr5_2:10790196-10790215 Msa0756490:intron 25.0%
! CTTGAAATAGACATTATCAA+AGG - chr5_2:10790440-10790459 None:intergenic 25.0%
! CTATTTCAAGAATCTACAAA+AGG + chr5_2:10790450-10790469 Msa0756490:CDS 25.0%
! TGTACTTACGGAATATAATA+AGG - chr5_2:10790775-10790794 None:intergenic 25.0%
TGAAAAGATTCTAATCCAAC+TGG + chr5_2:10787792-10787811 Msa0756490:five_prime_UTR 30.0%
ATATGGAATGTGAAATTGTC+GGG - chr5_2:10787826-10787845 None:intergenic 30.0%
! CTGACAATGTTTTCAACATT+AGG - chr5_2:10788080-10788099 None:intergenic 30.0%
ATGATATTCCAATTACACAG+GGG + chr5_2:10788266-10788285 Msa0756490:intron 30.0%
AAACCAATGCAATAACATCA+CGG - chr5_2:10788471-10788490 None:intergenic 30.0%
AGACTGAATTAACTTTCACA+GGG - chr5_2:10788822-10788841 None:intergenic 30.0%
AAGACTGAATTAACTTTCAC+AGG - chr5_2:10788823-10788842 None:intergenic 30.0%
TAGAATTGGGAAGATTTGAT+GGG + chr5_2:10788914-10788933 Msa0756490:CDS 30.0%
ACGACTTGACATTGTTTATA+CGG + chr5_2:10789321-10789340 Msa0756490:intron 30.0%
TTATTGGTCAAAAACAATGG+AGG + chr5_2:10789843-10789862 Msa0756490:intron 30.0%
TATTGGTCAAAAACAATGGA+GGG + chr5_2:10789844-10789863 Msa0756490:intron 30.0%
GTTCAAAAGTTGTCAAAAAG+TGG + chr5_2:10789920-10789939 Msa0756490:intron 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr5_2:10790021-10790040 None:intergenic 30.0%
CCGATATAATTGATCTACTT+TGG - chr5_2:10790170-10790189 None:intergenic 30.0%
CTTGAAATTGTACACTCTAT+TGG - chr5_2:10790299-10790318 None:intergenic 30.0%
AATTAAAATCAATGTGCCCA+AGG + chr5_2:10790365-10790384 Msa0756490:CDS 30.0%
ATTAAAATCAATGTGCCCAA+GGG + chr5_2:10790366-10790385 Msa0756490:CDS 30.0%
AAGAATCTACAAAAGGGAAA+GGG + chr5_2:10790457-10790476 Msa0756490:CDS 30.0%
CATATCAAGTTAGAATGTTG+TGG + chr5_2:10790663-10790682 Msa0756490:three_prime_UTR 30.0%
! CAGTCTTTTAGATGTACTTA+CGG - chr5_2:10790787-10790806 None:intergenic 30.0%
TATGGAATGTGAAATTGTCG+GGG - chr5_2:10787825-10787844 None:intergenic 35.0%
TTGCAGAGGTAAAGTAAAGT+AGG - chr5_2:10787937-10787956 None:intergenic 35.0%
GTAGTGGTGTCTACTTAATT+GGG - chr5_2:10788045-10788064 None:intergenic 35.0%
TGTAGTGGTGTCTACTTAAT+TGG - chr5_2:10788046-10788065 None:intergenic 35.0%
TAGGACAAGAATTCTTGTAG+TGG - chr5_2:10788061-10788080 None:intergenic 35.0%
TCACCCTGATAATCTTTCAT+TGG + chr5_2:10788342-10788361 Msa0756490:CDS 35.0%
CAGCCAATGAAAGATTATCA+GGG - chr5_2:10788348-10788367 None:intergenic 35.0%
GAAACTTTATTCTGGCAAAG+AGG - chr5_2:10788421-10788440 None:intergenic 35.0%
CAGCACAAGAAACTTTATTC+TGG - chr5_2:10788429-10788448 None:intergenic 35.0%
! TTGTGCTGATATTCTAGCTA+TGG + chr5_2:10788441-10788460 Msa0756490:CDS 35.0%
AACCAATGCAATAACATCAC+GGG - chr5_2:10788470-10788489 None:intergenic 35.0%
TGAAATTTGAATTTGCAGGC+AGG + chr5_2:10788874-10788893 Msa0756490:intron 35.0%
ACCATACTATGAGGTAGAAT+TGG + chr5_2:10788900-10788919 Msa0756490:CDS 35.0%
CCATACTATGAGGTAGAATT+GGG + chr5_2:10788901-10788920 Msa0756490:CDS 35.0%
GTAGAATTGGGAAGATTTGA+TGG + chr5_2:10788913-10788932 Msa0756490:CDS 35.0%
ACAGAAATGATTGCACTTTC+AGG + chr5_2:10789036-10789055 Msa0756490:CDS 35.0%
ACTGGCACCCTTTAATTAAT+TGG - chr5_2:10789095-10789114 None:intergenic 35.0%
TCAATATGTCTCATGCATGT+TGG - chr5_2:10789138-10789157 None:intergenic 35.0%
ACCCTCATTATACTGTTTGA+GGG + chr5_2:10789179-10789198 Msa0756490:intron 35.0%
ACCCTCAAACAGTATAATGA+GGG - chr5_2:10789183-10789202 None:intergenic 35.0%
TACCCTCAAACAGTATAATG+AGG - chr5_2:10789184-10789203 None:intergenic 35.0%
AAGCATCTGAGTTAGATCTT+AGG + chr5_2:10789606-10789625 Msa0756490:intron 35.0%
!! TTGAAGGGTAGTATTTCTAG+TGG + chr5_2:10789668-10789687 Msa0756490:intron 35.0%
!! GTAGTATTTCTAGTGGTTGT+CGG + chr5_2:10789675-10789694 Msa0756490:intron 35.0%
!!! GACAACTTTTTTGACAACCT+TGG + chr5_2:10789808-10789827 Msa0756490:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr5_2:10789985-10790004 None:intergenic 35.0%
GTAGATCAATTATATCGGGA+CGG + chr5_2:10790172-10790191 Msa0756490:intron 35.0%
GAATCATGTCAATCAACACT+AGG - chr5_2:10790224-10790243 None:intergenic 35.0%
CGTAGTGTAAGTCTAATGTA+GGG - chr5_2:10790339-10790358 None:intergenic 35.0%
! TAGACATTATCAAAGGCATG+TGG - chr5_2:10790433-10790452 None:intergenic 35.0%
CAAGAATCTACAAAAGGGAA+AGG + chr5_2:10790456-10790475 Msa0756490:CDS 35.0%
!! AAAAGCATTTACTGCAGCTT+TGG - chr5_2:10790524-10790543 None:intergenic 35.0%
GTGTCAAGAATTCACACAAT+GGG + chr5_2:10790608-10790627 Msa0756490:CDS 35.0%
CTACTTAATTGGGCATGAGT+AGG - chr5_2:10788035-10788054 None:intergenic 40.0%
TTACCTGAACAAAGCAGTCA+TGG - chr5_2:10788169-10788188 None:intergenic 40.0%
CCAGCCAATGAAAGATTATC+AGG - chr5_2:10788349-10788368 None:intergenic 40.0%
CCTGATAATCTTTCATTGGC+TGG + chr5_2:10788346-10788365 Msa0756490:CDS 40.0%
! AATCTTTCATTGGCTGGAGA+TGG + chr5_2:10788352-10788371 Msa0756490:CDS 40.0%
AACCCGTGATGTTATTGCAT+TGG + chr5_2:10788465-10788484 Msa0756490:CDS 40.0%
! GGATCATCTAGAACAGCATT+AGG + chr5_2:10788768-10788787 Msa0756490:intron 40.0%
AATTTGAATTTGCAGGCAGG+AGG + chr5_2:10788877-10788896 Msa0756490:intron 40.0%
CCCAATTCTACCTCATAGTA+TGG - chr5_2:10788904-10788923 None:intergenic 40.0%
GACCCTCATTATACTGTTTG+AGG + chr5_2:10789178-10789197 Msa0756490:intron 40.0%
! ACTGTTTGAGGGTATGAATG+AGG + chr5_2:10789190-10789209 Msa0756490:intron 40.0%
! CTGTTTGAGGGTATGAATGA+GGG + chr5_2:10789191-10789210 Msa0756490:intron 40.0%
AGGGAGAAAAAAGAAGAGAG+AGG + chr5_2:10789863-10789882 Msa0756490:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr5_2:10789984-10790003 None:intergenic 40.0%
ACATGATTCATTCCCTCTGT+AGG + chr5_2:10790235-10790254 Msa0756490:intron 40.0%
GTTGCAATGTGAGAATCCAA+CGG - chr5_2:10790269-10790288 None:intergenic 40.0%
GCGTAGTGTAAGTCTAATGT+AGG - chr5_2:10790340-10790359 None:intergenic 40.0%
! CAAAGGCATGTGGAGTAATT+GGG - chr5_2:10790423-10790442 None:intergenic 40.0%
! TCAAAGGCATGTGGAGTAAT+TGG - chr5_2:10790424-10790443 None:intergenic 40.0%
AACTCTACCCAATTTGGTCA+TGG - chr5_2:10790587-10790606 None:intergenic 40.0%
ATGACCAAATTGGGTAGAGT+TGG + chr5_2:10790586-10790605 Msa0756490:CDS 40.0%
GGTGTCAAGAATTCACACAA+TGG + chr5_2:10790607-10790626 Msa0756490:CDS 40.0%
ACACAATGGGAACATTCGTA+CGG + chr5_2:10790621-10790640 Msa0756490:CDS 40.0%
TTAGAATGTTGTGGTCCTTG+TGG + chr5_2:10790672-10790691 Msa0756490:three_prime_UTR 40.0%
ATGGAAGAAGAGACGTAGAG+TGG - chr5_2:10788150-10788169 None:intergenic 45.0%
! CTTCCATGACTGCTTTGTTC+AGG + chr5_2:10788163-10788182 Msa0756490:CDS 45.0%
GCCACATAATAGAGCAGAGA+GGG + chr5_2:10788318-10788337 Msa0756490:CDS 45.0%
TCCCTCTCTGCTCTATTATG+TGG - chr5_2:10788322-10788341 None:intergenic 45.0%
TATACAAGCCAAAGCAGCTG+TGG + chr5_2:10788387-10788406 Msa0756490:CDS 45.0%
AATGGAAAACTTCCTGAGCC+AGG + chr5_2:10788961-10788980 Msa0756490:CDS 45.0%
!! TTCAAGTTGAATCCTGGCTC+AGG - chr5_2:10788976-10788995 None:intergenic 45.0%
!! AGCTGGTTCAAGTTGAATCC+TGG - chr5_2:10788982-10789001 None:intergenic 45.0%
AGTGTAAACCGTAAACCACG+CGG - chr5_2:10789069-10789088 None:intergenic 45.0%
TAATGAGGGTCGCATAGCAT+AGG - chr5_2:10789169-10789188 None:intergenic 45.0%
! GAGGGTATGAATGAGGGTAT+TGG + chr5_2:10789197-10789216 Msa0756490:intron 45.0%
TAAAAATACTCCCTCCGTCC+CGG + chr5_2:10789963-10789982 Msa0756490:intron 45.0%
GATCAATTATATCGGGACGG+AGG + chr5_2:10790175-10790194 Msa0756490:intron 45.0%
! TCCAAGGGTTGCAGTTGATA+TGG + chr5_2:10790396-10790415 Msa0756490:CDS 45.0%
TCCATATCAACTGCAACCCT+TGG - chr5_2:10790400-10790419 None:intergenic 45.0%
TTGAATCCGTGAAGAGGACT+TGG - chr5_2:10790498-10790517 None:intergenic 45.0%
TGGATCTTGAATCCGTGAAG+AGG - chr5_2:10790504-10790523 None:intergenic 45.0%
TGTTGCTGCCATGACCAAAT+TGG + chr5_2:10790576-10790595 Msa0756490:CDS 45.0%
GTTGCTGCCATGACCAAATT+GGG + chr5_2:10790577-10790596 Msa0756490:CDS 45.0%
GACACCAACTCTACCCAATT+TGG - chr5_2:10790593-10790612 None:intergenic 45.0%
TTGGCATCATGTCATCCACA+AGG - chr5_2:10790690-10790709 None:intergenic 45.0%
!!! ATTATTTTACATTTATAAAT+TGG - chr5_2:10789709-10789728 None:intergenic 5.0%
AAGAAGAGACGTAGAGTGGC+AGG - chr5_2:10788146-10788165 None:intergenic 50.0%
CCATCACACCCCTGTGTAAT+TGG - chr5_2:10788277-10788296 None:intergenic 50.0%
! CCAATTACACAGGGGTGTGA+TGG + chr5_2:10788274-10788293 Msa0756490:intron 50.0%
CGCCACATAATAGAGCAGAG+AGG + chr5_2:10788317-10788336 Msa0756490:CDS 50.0%
AACAGCATCCACAGCTGCTT+TGG - chr5_2:10788398-10788417 None:intergenic 50.0%
GGTCGCATAGCATAGGAACA+TGG - chr5_2:10789162-10789181 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr5_2:10789980-10789999 None:intergenic 50.0%
ATCAATGTGCCCAAGGGATG+TGG + chr5_2:10790372-10790391 Msa0756490:CDS 50.0%
CTCAGACCAAGTCCTCTTCA+CGG + chr5_2:10790489-10790508 Msa0756490:CDS 50.0%
GGTCATGGCAGCAACAAAGT+TGG - chr5_2:10790572-10790591 None:intergenic 50.0%
GGCAGGAGGACCATACTATG+AGG + chr5_2:10788891-10788910 Msa0756490:intron 55.0%
GTAATGCGCCGCGTGGTTTA+CGG + chr5_2:10789058-10789077 Msa0756490:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr5_2:10789976-10789995 None:intergenic 55.0%
ACGGTGTGAGCACCTACAGA+GGG - chr5_2:10790250-10790269 None:intergenic 55.0%
AACGGTGTGAGCACCTACAG+AGG - chr5_2:10790251-10790270 None:intergenic 55.0%
TCTGTAGGTGCTCACACCGT+TGG + chr5_2:10790250-10790269 Msa0756490:intron 55.0%
CCCTTGGATCCACATCCCTT+GGG - chr5_2:10790384-10790403 None:intergenic 55.0%
CCCAAGGGATGTGGATCCAA+GGG + chr5_2:10790381-10790400 Msa0756490:CDS 55.0%
ACCCTTGGATCCACATCCCT+TGG - chr5_2:10790385-10790404 None:intergenic 55.0%
! CGTGAAGAGGACTTGGTCTG+AGG - chr5_2:10790491-10790510 None:intergenic 55.0%
! CTTTCAGGTAATGCGCCGCG+TGG + chr5_2:10789051-10789070 Msa0756490:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr5_2:10789977-10789996 None:intergenic 60.0%
GCCCAAGGGATGTGGATCCA+AGG + chr5_2:10790380-10790399 Msa0756490:CDS 60.0%
TGTCGGGGTCACGAGCCAGT+TGG - chr5_2:10787810-10787829 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10787783 10790854 10787783 ID=Msa0756490;Name=Msa0756490
chr5_2 mRNA 10787783 10790854 10787783 ID=Msa0756490-mRNA-1;Parent=Msa0756490;Name=Msa0756490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=186|1|1|1|1|1|4|194|328
chr5_2 exon 10787783 10788184 10787783 ID=Msa0756490-mRNA-1:exon:4887;Parent=Msa0756490-mRNA-1
chr5_2 exon 10788286 10788486 10788286 ID=Msa0756490-mRNA-1:exon:4888;Parent=Msa0756490-mRNA-1
chr5_2 exon 10788892 10789057 10788892 ID=Msa0756490-mRNA-1:exon:4889;Parent=Msa0756490-mRNA-1
chr5_2 exon 10790257 10790854 10790257 ID=Msa0756490-mRNA-1:exon:4890;Parent=Msa0756490-mRNA-1
chr5_2 five_prime_UTR 10787783 10787968 10787783 ID=Msa0756490-mRNA-1:five_prime_utr;Parent=Msa0756490-mRNA-1
chr5_2 CDS 10787969 10788184 10787969 ID=Msa0756490-mRNA-1:cds;Parent=Msa0756490-mRNA-1
chr5_2 CDS 10788286 10788486 10788286 ID=Msa0756490-mRNA-1:cds;Parent=Msa0756490-mRNA-1
chr5_2 CDS 10788892 10789057 10788892 ID=Msa0756490-mRNA-1:cds;Parent=Msa0756490-mRNA-1
chr5_2 CDS 10790257 10790660 10790257 ID=Msa0756490-mRNA-1:cds;Parent=Msa0756490-mRNA-1
chr5_2 three_prime_UTR 10790661 10790854 10790661 ID=Msa0756490-mRNA-1:three_prime_utr;Parent=Msa0756490-mRNA-1
Gene Sequence

>Msa0756490

ATGGCTCAGCTTAATCTTATACTTGTTTGGTTACTCTTCTTAACTCTCTTTCTTCATTCATGTCCTACTCATGCCCAATTAAGTAGACACCACTACAAGAATTCTTGTCCTAATGTTGAAAACATTGTCAGACAAGCTGTCAAAAAGAAATTTCATCAAACATTTACAACAGTTCCTGCCACTCTACGTCTCTTCTTCCATGACTGCTTTGTTCAGGGGTGTGATGGTTCTATTCTTGTAGCATCAACGCCACATAATAGAGCAGAGAGGGATCACCCTGATAATCTTTCATTGGCTGGAGATGGATTTGATACTGTTATACAAGCCAAAGCAGCTGTGGATGCTGTTCCTCTTTGCCAGAATAAAGTTTCTTGTGCTGATATTCTAGCTATGGCAACCCGTGATGTTATTGCATTGGCAGGAGGACCATACTATGAGGTAGAATTGGGAAGATTTGATGGGCTAAGATCTAAAGATTCTGATGTAAATGGAAAACTTCCTGAGCCAGGATTCAACTTGAACCAGCTTAATACATTGTTTAAACATCACGGGCTTACACAAACAGAAATGATTGCACTTTCAGGTGCTCACACCGTTGGATTCTCACATTGCAACAAATTCACCAATAGAGTGTACAATTTCAAGACAACAAGTCGAGTAGACCCTACATTAGACTTACACTACGCAGCAAAATTAAAATCAATGTGCCCAAGGGATGTGGATCCAAGGGTTGCAGTTGATATGGACCCAATTACTCCACATGCCTTTGATAATGTCTATTTCAAGAATCTACAAAAGGGAAAGGGTTTATTCACCTCAGACCAAGTCCTCTTCACGGATTCAAGATCCAAAGCTGCAGTAAATGCTTTTGCTAGTAGTAACAAAATATTTCGTGCCAACTTTGTTGCTGCCATGACCAAATTGGGTAGAGTTGGTGTCAAGAATTCACACAATGGGAACATTCGTACGGATTGTTCTGTGATTTAA
Protein sequence

>Msa0756490

MAQLNLILVWLLFLTLFLHSCPTHAQLSRHHYKNSCPNVENIVRQAVKKKFHQTFTTVPATLRLFFHDCFVQGCDGSILVASTPHNRAERDHPDNLSLAGDGFDTVIQAKAAVDAVPLCQNKVSCADILAMATRDVIALAGGPYYEVELGRFDGLRSKDSDVNGKLPEPGFNLNQLNTLFKHHGLTQTEMIALSGAHTVGFSHCNKFTNRVYNFKTTSRVDPTLDLHYAAKLKSMCPRDVDPRVAVDMDPITPHAFDNVYFKNLQKGKGLFTSDQVLFTDSRSKAAVNAFASSNKIFRANFVAAMTKLGRVGVKNSHNGNIRTDCSVI*