AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731490 MtrunA17_Chr5g0425431 96.795 780 24 1 16 794 1 780 0.0 1562
Msa0731490 MtrunA17_Chr5g0425451 94.501 782 40 1 16 794 1 782 0.0 1510
Msa0731490 MtrunA17_Chr5g0425471 91.432 782 64 1 16 794 1 782 0.0 1464
Msa0731490 MtrunA17_Chr5g0425531 84.459 785 116 3 16 794 1 785 0.0 1354
Msa0731490 MtrunA17_Chr3g0115601 69.858 773 226 3 23 794 10 776 0.0 1168
Msa0731490 MtrunA17_Chr5g0411571 49.000 800 366 12 16 794 4 782 0.0 783
Msa0731490 MtrunA17_Chr1g0207281 49.933 751 359 12 42 784 34 775 0.0 746
Msa0731490 MtrunA17_Chr2g0278761 48.413 756 361 12 48 794 40 775 0.0 727
Msa0731490 MtrunA17_Chr2g0294751 46.675 782 384 14 16 792 1 754 0.0 724
Msa0731490 MtrunA17_Chr7g0269871 47.067 750 376 10 48 792 28 761 0.0 724
Msa0731490 MtrunA17_Chr1g0194841 46.401 778 387 11 20 792 3 755 0.0 723
Msa0731490 MtrunA17_Chr4g0050591 46.488 783 391 13 20 794 12 774 0.0 714
Msa0731490 MtrunA17_Chr6g0461231 27.952 669 355 30 48 650 14 621 1.51e-43 167
Msa0731490 MtrunA17_Chr6g0461191 28.036 667 353 29 50 650 16 621 3.39e-43 166
Msa0731490 MtrunA17_Chr2g0292341 28.095 630 328 26 69 625 37 614 3.37e-41 160
Msa0731490 MtrunA17_Chr3g0118971 27.164 670 363 29 52 656 18 627 9.51e-41 159
Msa0731490 MtrunA17_Chr3g0104081 27.032 603 348 22 62 607 22 589 5.58e-40 156
Msa0731490 MtrunA17_Chr6g0461211 27.666 647 343 28 69 650 35 621 1.56e-39 155
Msa0731490 MtrunA17_Chr6g0461221 26.637 672 368 28 48 654 15 626 3.38e-39 155
Msa0731490 MtrunA17_Chr7g0253561 27.545 668 331 30 62 650 4 597 1.21e-37 149
Msa0731490 MtrunA17_Chr5g0429581 25.748 602 354 22 64 607 7 573 5.98e-36 144
Msa0731490 MtrunA17_Chr5g0429541 25.676 592 343 22 69 607 12 559 6.67e-33 135
Msa0731490 MtrunA17_Chr7g0253551 27.740 447 231 20 59 448 26 437 7.66e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731490 AT1G78060.1 63.347 753 265 7 46 794 22 767 0.0 1012
Msa0731490 AT5G10560.1 50.195 771 356 9 46 794 28 792 0.0 788
Msa0731490 AT3G19620.1 50.602 747 344 14 48 784 27 758 0.0 753
Msa0731490 AT5G09730.1 48.280 785 377 14 19 794 9 773 0.0 733
Msa0731490 AT5G64570.1 48.325 776 379 13 27 794 23 784 0.0 728
Msa0731490 AT1G02640.1 46.360 783 388 13 14 792 4 758 0.0 717
Msa0731490 AT5G49360.1 46.999 783 378 17 21 792 14 770 0.0 704
Msa0731490 AT5G64570.3 51.557 578 270 8 27 602 23 592 0.0 604
Msa0731490 AT5G64570.2 48.438 640 309 12 162 794 1 626 0.0 597
Msa0731490 AT5G09700.1 44.581 489 258 7 312 794 45 526 4.89e-134 408
Msa0731490 AT3G47040.4 26.348 649 370 26 62 653 10 607 4.95e-41 160
Msa0731490 AT3G47000.1 26.027 657 356 27 62 650 10 604 2.45e-39 155
Msa0731490 AT5G04885.3 26.485 623 356 25 68 629 36 617 3.07e-39 155
Msa0731490 AT5G04885.1 26.485 623 356 25 68 629 36 617 3.07e-39 155
Msa0731490 AT5G04885.2 26.485 623 356 25 68 629 53 634 4.12e-39 155
Msa0731490 AT3G47040.1 25.526 666 379 27 62 653 10 632 2.35e-38 152
Msa0731490 AT3G47010.1 26.570 621 364 26 62 625 11 596 8.09e-38 150
Msa0731490 AT3G47050.1 26.101 613 352 24 58 609 6 578 1.01e-36 147
Msa0731490 AT3G47010.2 26.324 623 362 28 62 625 11 595 3.31e-36 145
Msa0731490 AT5G20950.2 29.257 417 218 17 72 436 36 427 2.50e-33 137
Msa0731490 AT5G20950.1 29.257 417 218 17 72 436 36 427 2.50e-33 137
Msa0731490 AT5G20950.3 29.257 417 218 17 72 436 114 505 2.98e-33 137
Msa0731490 AT3G62710.1 27.184 618 334 29 74 649 105 648 9.39e-33 135
Msa0731490 AT5G20940.1 28.605 423 238 16 72 448 42 446 7.42e-32 132
Msa0731490 AT3G47040.3 29.032 434 243 16 62 448 10 425 1.12e-30 126
Msa0731490 AT3G47000.3 28.868 433 220 17 62 436 10 412 1.20e-30 126
Msa0731490 AT3G47010.4 27.419 434 250 17 62 448 11 426 7.77e-28 118
Msa0731490 AT3G47000.2 25.482 467 284 20 206 650 3 427 3.33e-25 109
Msa0731490 AT3G47010.3 26.637 443 270 21 208 625 5 417 7.52e-25 108
Msa0731490 AT3G47050.2 26.064 376 218 13 58 389 6 365 4.33e-22 99.8

Find 206 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTATTGATGATTTAT+TGG 0.145046 5_1:+42346539 None:intergenic
AATAAGTGATTATGTTATTT+TGG 0.156153 5_1:-42346367 Msa0731490:CDS
CACCAAACATAAACATATTT+AGG 0.158019 5_1:-42349110 Msa0731490:CDS
TTCTAAGAAGCCTGTTATTT+TGG 0.174390 5_1:-42346244 Msa0731490:CDS
CTGCCTATGATTTGGAAAAT+TGG 0.179123 5_1:-42348927 Msa0731490:CDS
GCTAAGAATAATGACAAAAT+TGG 0.212120 5_1:-42346186 Msa0731490:CDS
TCAGGTTACTTTACAAGATT+TGG 0.243170 5_1:-42348491 Msa0731490:intron
TTGATGATTTATTGGCATTA+GGG 0.250324 5_1:+42346547 None:intergenic
TTTCCATTTCTGCCTTTCTT+TGG 0.251847 5_1:+42344860 None:intergenic
ACAGAGCATGTGTATTTATA+TGG 0.256453 5_1:+42350020 None:intergenic
AAGCTCAAGGGATGACGTTT+TGG 0.256760 5_1:-42349134 Msa0731490:CDS
TCTTGTCCTCTTCCCCATCT+TGG 0.274411 5_1:+42349084 None:intergenic
AAACAAGTATCCATATTAAA+AGG 0.276787 5_1:-42346489 Msa0731490:CDS
ACACTTTACTGCCTATGATT+TGG 0.277559 5_1:-42348935 Msa0731490:CDS
GTAAATACCCTTGGAGTTAT+AGG 0.279725 5_1:-42346570 Msa0731490:CDS
ACAAAATTGGAGGCATCATT+TGG 0.281644 5_1:-42346173 Msa0731490:CDS
ACTGATTCGGTACCAAAGTT+TGG 0.290827 5_1:+42349573 None:intergenic
ATTGATGATTTATTGGCATT+AGG 0.294469 5_1:+42346546 None:intergenic
TCTTTAGAGCATACTTGATT+TGG 0.301730 5_1:+42346675 None:intergenic
CTTGTCCTCTTCCCCATCTT+GGG 0.306397 5_1:+42349085 None:intergenic
TATGTAATGGAAAGCTTGAT+TGG 0.321978 5_1:-42344557 Msa0731490:three_prime_UTR
AATTCTGCCATATTGAAGTT+TGG 0.332874 5_1:+42346701 None:intergenic
GTATTTATATGGATAATTAT+AGG 0.339264 5_1:+42350031 None:intergenic
GGAGGTGGAAAGGGTGAAGT+TGG 0.339877 5_1:-42344794 Msa0731490:CDS
TACAAACTTGTTTCAGAGTT+AGG 0.340365 5_1:-42344980 Msa0731490:CDS
AAACTTCAATATGGCAGAAT+TGG 0.347201 5_1:-42346699 Msa0731490:CDS
CACAAAATTACCAAAATAAC+AGG 0.354358 5_1:+42346234 None:intergenic
CTGATTCGGTACCAAAGTTT+GGG 0.355066 5_1:+42349574 None:intergenic
CCTTTGGTAAATTCAAAGTA+TGG 0.359897 5_1:-42349045 Msa0731490:CDS
ACATTGGGAATTACAAATAC+TGG 0.364595 5_1:-42344923 Msa0731490:CDS
CTTCAAGGTGATTCCTTTGA+AGG 0.366164 5_1:-42349003 Msa0731490:CDS
CGGTGTTTCTTATGTTGGTA+AGG 0.366894 5_1:-42349671 Msa0731490:CDS
ATGCATATTAATTTACTCAT+TGG 0.369435 5_1:+42344436 None:intergenic
TCCCTAAATATGTTTATGTT+TGG 0.371836 5_1:+42349108 None:intergenic
CATGTCCATTTCTGTAACAT+TGG 0.372834 5_1:-42344939 Msa0731490:CDS
TGGCTCTTTGAGTGATTGTA+AGG 0.376423 5_1:+42349809 None:intergenic
GGCACGGTCGATTTGAGATA+TGG 0.377068 5_1:+42346779 None:intergenic
AAGTAATGGTGATGGAAAAT+TGG 0.378794 5_1:+42349956 None:intergenic
ATCATTTGGGCTGGTTATCC+TGG 0.383440 5_1:-42346159 Msa0731490:CDS
GCTGGTTATCCTGGTGAAAC+TGG 0.384326 5_1:-42346150 Msa0731490:CDS
GGTCCAAAGGTCTACGAATT+CGG 0.387773 5_1:-42345118 Msa0731490:CDS
TTTGACGGAAATGAAGTTGT+AGG 0.388452 5_1:+42345069 None:intergenic
ACAAATACTGGAAGCATGGC+TGG 0.392102 5_1:-42344911 Msa0731490:CDS
TTTGAAGGTGGGAAACTGAT+TGG 0.392699 5_1:-42348988 Msa0731490:CDS
AATTCCCAATGTTACAGAAA+TGG 0.398418 5_1:+42344934 None:intergenic
ACCAAACATAAACATATTTA+GGG 0.398770 5_1:-42349109 Msa0731490:CDS
AGATTGTAATCTGCACAGTT+TGG 0.398988 5_1:+42348379 None:intergenic
AATCCAACCAAACTTCAATA+TGG 0.399490 5_1:-42346708 Msa0731490:CDS
TGGTGGAAGGGCTCTGGCTC+AGG 0.399913 5_1:-42346130 Msa0731490:CDS
AGGAATAATTTGAGTAGCTT+AGG 0.401616 5_1:+42345089 None:intergenic
CAAACCTAGTCTTATTCTAA+TGG 0.402033 5_1:+42346740 None:intergenic
GCTCTGGCTCAGGTTGTGTT+TGG 0.406314 5_1:-42346120 Msa0731490:CDS
TAGCCGAATTCGTAGACCTT+TGG 0.407677 5_1:+42345115 None:intergenic
AAGCCAAAGAAAGGCAGAAA+TGG 0.409876 5_1:-42344863 Msa0731490:CDS
ATAAGACTAGGTTTGTTTGA+TGG 0.411429 5_1:-42346732 Msa0731490:CDS
ACTCCAAGGGTATTTACTCT+TGG 0.414446 5_1:+42346576 None:intergenic
AACAGCTGGTGAAGATCCTT+TGG 0.418172 5_1:-42349061 Msa0731490:CDS
AACCCTACCAACTGTTTCAC+TGG 0.418928 5_1:+42344836 None:intergenic
AGGTGGTTATTTGTTGGTTG+TGG 0.420306 5_1:-42344705 Msa0731490:CDS
ATAAGTTTCTGTTGCTTACC+AGG 0.420753 5_1:+42346285 None:intergenic
ATCAAGTAAAGAATAACTAA+TGG 0.425783 5_1:-42344613 Msa0731490:three_prime_UTR
TGAAACTGGTGGAAGGGCTC+TGG 0.429489 5_1:-42346136 Msa0731490:CDS
TAAGACTAGGTTTGTTTGAT+GGG 0.430129 5_1:-42346731 Msa0731490:CDS
ACTCTGAAACAAGTTTGTAA+TGG 0.431167 5_1:+42344984 None:intergenic
CAGCTTCAAGAGCAAGGTCT+AGG 0.436293 5_1:+42346649 None:intergenic
CAAAATTGGAGGCATCATTT+GGG 0.439628 5_1:-42346172 Msa0731490:CDS
CTCATTCTCATGTCTGTCAT+TGG 0.443342 5_1:+42345190 None:intergenic
TTTGAGAGTGTGACGGTGGA+AGG 0.447503 5_1:-42344815 Msa0731490:CDS
TGAAGAAGGTGGTTATTTGT+TGG 0.451987 5_1:-42344711 Msa0731490:CDS
GAGGTGGAAAGGGTGAAGTT+GGG 0.452463 5_1:-42344793 Msa0731490:CDS
GTGTTTGGTGACTATAACCC+TGG 0.452505 5_1:-42346105 Msa0731490:intron
TGTAAGGTTGAGATTGCAAA+AGG 0.454420 5_1:+42349825 None:intergenic
CAATATGACTACTTATGTAA+TGG 0.454429 5_1:-42344570 Msa0731490:three_prime_UTR
AGCCAGACACATTATCGTTC+TGG 0.456155 5_1:-42346450 Msa0731490:CDS
ATGTCCATTTCTGTAACATT+GGG 0.459363 5_1:-42344938 Msa0731490:CDS
AGTTACTGACCTTACTGATT+CGG 0.462510 5_1:+42349560 None:intergenic
GCACGGTCGATTTGAGATAT+GGG 0.464880 5_1:+42346780 None:intergenic
ACATATTTAGGGACCCAAGA+TGG 0.464899 5_1:-42349098 Msa0731490:CDS
TTAGCAAAAGTAATATCAAC+AGG 0.467973 5_1:+42346204 None:intergenic
ACGGTGGAAGGAGGTGGAAA+GGG 0.469710 5_1:-42344803 Msa0731490:CDS
TTATTTGTTGGTTGTGGGAG+AGG 0.471909 5_1:-42344699 Msa0731490:CDS
AATCAGTTTCCCACCTTCAA+AGG 0.474071 5_1:+42348990 None:intergenic
TCTTATGTGAGAGGACTTCA+AGG 0.479398 5_1:-42349018 Msa0731490:CDS
TTGCACGGTGTTTCTTATGT+TGG 0.479426 5_1:-42349676 Msa0731490:CDS
CATATTTAGGGACCCAAGAT+GGG 0.480274 5_1:-42349097 Msa0731490:CDS
CTGCCATATTGAAGTTTGGT+TGG 0.480427 5_1:+42346705 None:intergenic
AATATGGATACTTGTTTACA+AGG 0.482332 5_1:+42346495 None:intergenic
CTGTTTGTGAAGCCAAAGAA+AGG 0.483403 5_1:-42344872 Msa0731490:CDS
GTGTTTCCGTCTCTTGACTT+TGG 0.484702 5_1:+42346331 None:intergenic
GGTGGTTATTTGTTGGTTGT+GGG 0.491601 5_1:-42344704 Msa0731490:CDS
CAAGGTGATTCCTTTGAAGG+TGG 0.492851 5_1:-42349000 Msa0731490:CDS
AGGGTATTTACTCTTGGAAG+TGG 0.494590 5_1:+42346582 None:intergenic
GTTGTATGAATGAAGGTGAT+TGG 0.496646 5_1:-42349189 Msa0731490:intron
CTTAATATGAGACGGAGGAT+AGG 0.499315 5_1:+42344495 None:intergenic
ATCCAGAACGATAATGTGTC+TGG 0.501407 5_1:+42346448 None:intergenic
GGTGTTTCTTATGTTGGTAA+GGG 0.501707 5_1:-42349670 Msa0731490:CDS
GAGCCGTGATACGATGTCTT+TGG 0.502639 5_1:+42349789 None:intergenic
AGGTACATTAGTCGGTGAAT+CGG 0.504246 5_1:+42349891 None:intergenic
TAAGGTTGAGATTGCAAAAG+GGG 0.505884 5_1:+42349827 None:intergenic
GACGGTGGAAGGAGGTGGAA+AGG 0.507657 5_1:-42344804 Msa0731490:CDS
GGTAAGGGGATAAGATTGAA+TGG 0.507764 5_1:-42349655 Msa0731490:CDS
ATGAGAGCTGATCCATCATC+AGG 0.511303 5_1:-42345172 Msa0731490:CDS
TTGGAGATGTCACAGGAGTA+AGG 0.511401 5_1:+42349868 None:intergenic
GTAGAAACGGTAGGTTCTAC+CGG 0.511605 5_1:+42345144 None:intergenic
CGGTATACCGAGTCGAGGAA+TGG 0.513844 5_1:+42349723 None:intergenic
ACATCAGCTACAACATCCTC+TGG 0.517153 5_1:+42347861 None:intergenic
GCAGCAGTAAGAATAATTTG+AGG 0.517542 5_1:+42349607 None:intergenic
CTACCGGGATAGCCTGATGA+TGG 0.517596 5_1:+42345160 None:intergenic
TGGTTGACTGGTTGATGTGA+AGG 0.523221 5_1:+42345038 None:intergenic
TTCTTGCAGCTTCAAGAGCA+AGG 0.526483 5_1:+42346643 None:intergenic
GGTTACTTTACAAGATTTGG+CGG 0.526554 5_1:-42348488 Msa0731490:CDS
TGTGCTTACAACCGTGTCAA+TGG 0.530376 5_1:-42348406 Msa0731490:CDS
TATCGTTCTGGATGTACTGA+TGG 0.530389 5_1:-42346438 Msa0731490:CDS
AAGAATAATGACAAAATTGG+AGG 0.530513 5_1:-42346183 Msa0731490:CDS
GCTAGAGGAGTGTACAATGC+TGG 0.534160 5_1:-42349159 Msa0731490:CDS
ATACCGAGTCGAGGAATGGC+AGG 0.534851 5_1:+42349727 None:intergenic
ATTGGAGGCATCATTTGGGC+TGG 0.536363 5_1:-42346168 Msa0731490:CDS
CAGCAGTAAGAATAATTTGA+GGG 0.536364 5_1:+42349608 None:intergenic
TCTTGGAAGTGGGAGAATTG+AGG 0.537861 5_1:+42346593 None:intergenic
TTAATATGAGACGGAGGATA+GGG 0.539045 5_1:+42344496 None:intergenic
AAGGTCTACGAATTCGGCTA+TGG 0.539382 5_1:-42345112 Msa0731490:CDS
CCTTTGGACCTGTGTAGAAA+CGG 0.540578 5_1:+42345131 None:intergenic
AATGGTAAATAGATTGTGTA+GGG 0.541798 5_1:+42346758 None:intergenic
AAGGTGATTCCTTTGAAGGT+GGG 0.542147 5_1:-42348999 Msa0731490:CDS
ATCCAGTGAAACAGTTGGTA+GGG 0.542668 5_1:-42344838 Msa0731490:CDS
GATCCATCATCAGGCTATCC+CGG 0.542828 5_1:-42345163 Msa0731490:CDS
GCATAAATCCCCTCACAGCA+TGG 0.543300 5_1:-42349980 Msa0731490:CDS
GGCTTCACAAACAGCAACAC+AGG 0.545539 5_1:+42344881 None:intergenic
CTATGATTTGGAAAATTGGA+AGG 0.547121 5_1:-42348923 Msa0731490:CDS
GGTGTCAAGGTGGTTGAAGA+AGG 0.548262 5_1:-42344725 Msa0731490:CDS
TACAATGCTGGACAAGCTCA+AGG 0.548478 5_1:-42349147 Msa0731490:CDS
CTTCCAAGAGTAAATACCCT+TGG 0.550798 5_1:-42346579 Msa0731490:CDS
CAATGTTACAGAAATGGACA+TGG 0.553553 5_1:+42344940 None:intergenic
AGAGTTCATTTAGAGTTACC+TGG 0.556126 5_1:-42346303 Msa0731490:CDS
GCCCTTCCACCAGTTTCACC+AGG 0.557917 5_1:+42346141 None:intergenic
AATCCAGTGAAACAGTTGGT+AGG 0.561271 5_1:-42344839 Msa0731490:CDS
GTGTTTCTTATGTTGGTAAG+GGG 0.562805 5_1:-42349669 Msa0731490:CDS
AGGGACCCAAGATGGGGAAG+AGG 0.563005 5_1:-42349090 Msa0731490:CDS
TCGGTATACCGAGTTATCAA+TGG 0.563582 5_1:-42349711 Msa0731490:CDS
GAAGGTGGGAAACTGATTGG+AGG 0.564373 5_1:-42348985 Msa0731490:CDS
TCATTCCACCATTGATAACT+CGG 0.565942 5_1:+42349703 None:intergenic
CCATACTTTGAATTTACCAA+AGG 0.567024 5_1:+42349045 None:intergenic
TAATGGTAAATAGATTGTGT+AGG 0.569087 5_1:+42346757 None:intergenic
GTGAATCGGCATGAACGAGT+TGG 0.570073 5_1:+42349905 None:intergenic
ATCCTGGTGAAACTGGTGGA+AGG 0.570539 5_1:-42346143 Msa0731490:CDS
GCTCTTGAAGCTGCAAGAAG+TGG 0.571675 5_1:-42346639 Msa0731490:CDS
CATAAATCCCCTCACAGCAT+GGG 0.572541 5_1:-42349979 Msa0731490:CDS
GTAAGGTTGAGATTGCAAAA+GGG 0.573349 5_1:+42349826 None:intergenic
CAAATACTGGAAGCATGGCT+GGG 0.573487 5_1:-42344910 Msa0731490:CDS
ACTTTGGTACCGAATCAGTA+AGG 0.574437 5_1:-42349569 Msa0731490:intron
GAGAGTGTGACGGTGGAAGG+AGG 0.575492 5_1:-42344812 Msa0731490:CDS
AGTGTGACGGTGGAAGGAGG+TGG 0.578214 5_1:-42344809 Msa0731490:CDS
AGAACGATAATGTGTCTGGC+TGG 0.580712 5_1:+42346452 None:intergenic
AGCAAATGAGAGTGGTGTCA+AGG 0.581128 5_1:-42344738 Msa0731490:CDS
GTATCGAATGAGTGGTTGAC+TGG 0.582453 5_1:+42345026 None:intergenic
AATTACAAATACTGGAAGCA+TGG 0.582605 5_1:-42344915 Msa0731490:CDS
CATCGTATCACGGCTCACAT+TGG 0.582953 5_1:-42349782 Msa0731490:CDS
GTAGCTGATGTACTTCGAGC+TGG 0.583158 5_1:-42347849 Msa0731490:intron
AAAATTGGCCCATGCTGTGA+GGG 0.583831 5_1:+42349971 None:intergenic
TCCTGGTGAAACTGGTGGAA+GGG 0.585464 5_1:-42346142 Msa0731490:CDS
CGATTCATATATGAGAAACA+AGG 0.585554 5_1:-42347897 Msa0731490:CDS
TTAAATCAGGTATATTGCGT+CGG 0.586898 5_1:-42347934 Msa0731490:intron
TATGGTGTTTCTTATGTGAG+AGG 0.587329 5_1:-42349027 Msa0731490:CDS
GAGTAAGGAGGTACATTAGT+CGG 0.591459 5_1:+42349883 None:intergenic
CATTAGGGCCTATAACTCCA+AGG 0.594911 5_1:+42346562 None:intergenic
AAAAGACACTTAATATGAGA+CGG 0.601763 5_1:+42344487 None:intergenic
GGAAGAGGACAAGAAACAGC+TGG 0.605215 5_1:-42349075 Msa0731490:CDS
GGGTATTTACTCTTGGAAGT+GGG 0.605290 5_1:+42346583 None:intergenic
CCGTTTCTACACAGGTCCAA+AGG 0.609130 5_1:-42345131 Msa0731490:CDS
TCAGGGATGGATGTAGAGTG+TGG 0.611464 5_1:-42346852 Msa0731490:intron
AGAACCTACCGTTTCTACAC+AGG 0.612051 5_1:-42345139 Msa0731490:CDS
GGTTATCCTGGTGAAACTGG+TGG 0.612813 5_1:-42346147 Msa0731490:CDS
ACGTGGGTTGGAGATGTCAC+AGG 0.612949 5_1:+42349861 None:intergenic
GTCAAGGTGGTTGAAGAAGG+TGG 0.614362 5_1:-42344722 Msa0731490:CDS
TGGAAATCCAGTGAAACAGT+TGG 0.620701 5_1:-42344843 Msa0731490:CDS
GTATACCGAGTTATCAATGG+TGG 0.620903 5_1:-42349708 Msa0731490:CDS
GCTCCTGCCATTCCTCGACT+CGG 0.625159 5_1:-42349730 Msa0731490:CDS
TGGACCTGTGTAGAAACGGT+AGG 0.625209 5_1:+42345135 None:intergenic
TTTACCATTAGAATAAGACT+AGG 0.630221 5_1:-42346744 Msa0731490:CDS
TAAATAGATTGTGTAGGGCA+CGG 0.632594 5_1:+42346763 None:intergenic
GGTAGGGTTTGAGAGTGTGA+CGG 0.635292 5_1:-42344822 Msa0731490:CDS
AGGGTTTGAGAGTGTGACGG+TGG 0.638866 5_1:-42344819 Msa0731490:CDS
ATTGGACCAAAGTCAAGAGA+CGG 0.639353 5_1:-42346337 Msa0731490:CDS
GAGCCAAAGACATCGTATCA+CGG 0.640636 5_1:-42349792 Msa0731490:CDS
TAGAAACGGTAGGTTCTACC+GGG 0.648311 5_1:+42345145 None:intergenic
CTTAGTAGAGCAAATGAGAG+TGG 0.648348 5_1:-42344746 Msa0731490:CDS
GTGATTGGAACTGAGGCTAG+AGG 0.649624 5_1:-42349174 Msa0731490:CDS
ATACAACAAGGACGATCTAG+TGG 0.653851 5_1:-42348436 Msa0731490:CDS
AGTTTGGAACTCCATTGACA+CGG 0.658172 5_1:+42348395 None:intergenic
ATTAGGGCCTATAACTCCAA+GGG 0.662705 5_1:+42346563 None:intergenic
TTGTATGCAACTATGAAACG+AGG 0.664632 5_1:+42348453 None:intergenic
AATGAAGGTGATTGGAACTG+AGG 0.666042 5_1:-42349181 Msa0731490:intron
TATGATTTGGAAAATTGGAA+GGG 0.673969 5_1:-42348922 Msa0731490:CDS
ACAATGCTGGACAAGCTCAA+GGG 0.675868 5_1:-42349146 Msa0731490:CDS
ATATTTAGGGACCCAAGATG+GGG 0.678025 5_1:-42349096 Msa0731490:CDS
GAGGGAGACTACCAATGACA+TGG 0.689428 5_1:-42345237 Msa0731490:CDS
TGGTGGAATGAAGCTTTGCA+CGG 0.702092 5_1:-42349691 Msa0731490:CDS
ATGGATACTTGTTTACAAGG+AGG 0.708927 5_1:+42346498 None:intergenic
GAAAATTGGCCCATGCTGTG+AGG 0.711405 5_1:+42349970 None:intergenic
AAATTGGCCCATGCTGTGAG+GGG 0.711472 5_1:+42349972 None:intergenic
TAACTCGGTATACCGAGTCG+AGG 0.711678 5_1:+42349718 None:intergenic
TTTCATAGTTGCATACAACA+AGG 0.712280 5_1:-42348448 Msa0731490:CDS
GAGATGTCACAGGAGTAAGG+AGG 0.715685 5_1:+42349871 None:intergenic
AGACACTTAATATGAGACGG+AGG 0.717375 5_1:+42344490 None:intergenic
AAATGAGAGTGGTGTCAAGG+TGG 0.736902 5_1:-42344735 Msa0731490:CDS
TGTATGCAACTATGAAACGA+GGG 0.751077 5_1:+42348454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAATTATATTAAAAT+CGG + chr5_1:42345174-42345193 None:intergenic 0.0%
!!! TATTCATGATAATTTATTTT+CGG - chr5_1:42349947-42349966 Msa0731490:CDS 10.0%
!! GTATTTATATGGATAATTAT+AGG + chr5_1:42344442-42344461 None:intergenic 15.0%
!! ATCCTCATTATAAAAATATA+AGG + chr5_1:42345201-42345220 None:intergenic 15.0%
!!! AATAAGTGATTATGTTATTT+TGG - chr5_1:42348103-42348122 Msa0731490:intron 15.0%
!! TATACTAGAAAAAGTTATTT+GGG + chr5_1:42349150-42349169 None:intergenic 15.0%
!! ATATACTAGAAAAAGTTATT+TGG + chr5_1:42349151-42349170 None:intergenic 15.0%
!! CATCAAAAAAATCTAAACAT+GGG + chr5_1:42344943-42344962 None:intergenic 20.0%
!! TCATCAAAAAAATCTAAACA+TGG + chr5_1:42344944-42344963 None:intergenic 20.0%
!!! GACCTTATATTTTTATAATG+AGG - chr5_1:42345196-42345215 Msa0731490:CDS 20.0%
!! ACCAAACATAAACATATTTA+GGG - chr5_1:42345361-42345380 Msa0731490:intron 20.0%
!! ATGGATTTGGATTATTAAAA+TGG + chr5_1:42345950-42345969 None:intergenic 20.0%
!!! TTACAATCTTTTAACCAATA+CGG - chr5_1:42346105-42346124 Msa0731490:intron 20.0%
!! GTTCTTATAAATTACAAAAG+TGG - chr5_1:42346205-42346224 Msa0731490:CDS 20.0%
!! CTGATTATGAAATAAAGAAA+GGG + chr5_1:42346661-42346680 None:intergenic 20.0%
!! TCTGATTATGAAATAAAGAA+AGG + chr5_1:42346662-42346681 None:intergenic 20.0%
!! ATAGAACTATTATGAGTTTA+CGG - chr5_1:42346691-42346710 Msa0731490:CDS 20.0%
!!! TTTCTCATTAGTATTTTTGT+CGG - chr5_1:42346846-42346865 Msa0731490:CDS 20.0%
!!! ATTTATGTGTATTTTCATCA+TGG - chr5_1:42347039-42347058 Msa0731490:intron 20.0%
!! AAACAAAATACAAAAGAAGA+AGG + chr5_1:42347205-42347224 None:intergenic 20.0%
!!! TGTCTTAATTTTACTCAATT+TGG - chr5_1:42347286-42347305 Msa0731490:intron 20.0%
!! TTTGACATAAACTAAAACTA+AGG + chr5_1:42347349-42347368 None:intergenic 20.0%
!!! ATTGTGTATGTTTGAAATTA+TGG + chr5_1:42347542-42347561 None:intergenic 20.0%
!!! AAGAACTATTGATGATTTAT+TGG + chr5_1:42347934-42347953 None:intergenic 20.0%
!! AAACAAGTATCCATATTAAA+AGG - chr5_1:42347981-42348000 Msa0731490:intron 20.0%
!!! TGATTATGTTATTTTGGTTA+TGG - chr5_1:42348109-42348128 Msa0731490:intron 20.0%
!!! GATTATGTTATTTTGGTTAT+GGG - chr5_1:42348110-42348129 Msa0731490:intron 20.0%
!! TATGTATGTTTATTTGTTCA+TGG + chr5_1:42348411-42348430 None:intergenic 20.0%
!! ACAAATAAACATACATAATG+TGG - chr5_1:42348414-42348433 Msa0731490:CDS 20.0%
!! TACATAATGTGGTAAAAAAA+TGG - chr5_1:42348425-42348444 Msa0731490:CDS 20.0%
!! TGAAGTTTATACATGTTTAA+AGG + chr5_1:42348647-42348666 None:intergenic 20.0%
!! AAATGAGAGAATATTTAGTT+AGG - chr5_1:42348692-42348711 Msa0731490:intron 20.0%
!!! TTATTTTATATTGGGAAACA+AGG - chr5_1:42348736-42348755 Msa0731490:intron 20.0%
!!! TATTTTATATTGGGAAACAA+GGG - chr5_1:42348737-42348756 Msa0731490:intron 20.0%
!!! ATAATCAATGTTTTCAATTG+TGG + chr5_1:42349080-42349099 None:intergenic 20.0%
!! ATACTAGAAAAAGTTATTTG+GGG + chr5_1:42349149-42349168 None:intergenic 20.0%
!!! GTATTTTGATGAAATCTTTT+GGG + chr5_1:42349261-42349280 None:intergenic 20.0%
!! ATCAAGTAAAGAATAACTAA+TGG - chr5_1:42349857-42349876 Msa0731490:CDS 20.0%
!! ATGCATATTAATTTACTCAT+TGG + chr5_1:42350037-42350056 None:intergenic 20.0%
! AAAAATGAAAGTAATGGTGA+TGG + chr5_1:42344525-42344544 None:intergenic 25.0%
! GAAGAGAAAAATGAAAGTAA+TGG + chr5_1:42344531-42344550 None:intergenic 25.0%
! ATTATGTGTTGTATGAATGA+AGG - chr5_1:42345274-42345293 Msa0731490:intron 25.0%
! CACCAAACATAAACATATTT+AGG - chr5_1:42345360-42345379 Msa0731490:intron 25.0%
! TCCCTAAATATGTTTATGTT+TGG + chr5_1:42345365-42345384 None:intergenic 25.0%
!! TATGATTTGGAAAATTGGAA+GGG - chr5_1:42345548-42345567 Msa0731490:intron 25.0%
! AGAGAAAAGAAAACTTACTT+TGG + chr5_1:42345597-42345616 None:intergenic 25.0%
!! AGTAAGTTTTCTTTTCTCTA+TGG - chr5_1:42345598-42345617 Msa0731490:intron 25.0%
!! CTGAATTATTAGAATGGATT+TGG + chr5_1:42345963-42345982 None:intergenic 25.0%
! CAAATCCATTCTAATAATTC+AGG - chr5_1:42345961-42345980 Msa0731490:intron 25.0%
! AGTAACCTGAATTATTAGAA+TGG + chr5_1:42345969-42345988 None:intergenic 25.0%
!! AATGTTTTCCACTCTATTAA+AGG - chr5_1:42346356-42346375 Msa0731490:CDS 25.0%
! TTGATTAGTATGAATGATTC+TGG - chr5_1:42346510-42346529 Msa0731490:CDS 25.0%
! TCGTTATCTTACTTTATCAA+TGG - chr5_1:42346805-42346824 Msa0731490:CDS 25.0%
! TTTGCTTATATTAAGTCACA+TGG - chr5_1:42346878-42346897 Msa0731490:intron 25.0%
! TTATATTAAGTCACATGGTT+TGG - chr5_1:42346883-42346902 Msa0731490:intron 25.0%
!!! TTCATCATGGTTTTTAGTAT+AGG - chr5_1:42347052-42347071 Msa0731490:intron 25.0%
! CAAAGATGTAACATAATTAG+AGG - chr5_1:42347082-42347101 Msa0731490:intron 25.0%
! CTAAACATAGACTAATTCTA+AGG + chr5_1:42347424-42347443 None:intergenic 25.0%
!! CTTAGAATTAGTCTATGTTT+AGG - chr5_1:42347422-42347441 Msa0731490:intron 25.0%
!! TATAACTTGTACCGAAATAA+CGG + chr5_1:42347465-42347484 None:intergenic 25.0%
!!! ATTATAATTTTGATGAACCG+TGG - chr5_1:42347566-42347585 Msa0731490:intron 25.0%
!! TTTCGTGATCAAAATTTTTC+AGG - chr5_1:42347600-42347619 Msa0731490:intron 25.0%
!! TTCGTGATCAAAATTTTTCA+GGG - chr5_1:42347601-42347620 Msa0731490:intron 25.0%
! AATGGTAAATAGATTGTGTA+GGG + chr5_1:42347715-42347734 None:intergenic 25.0%
! TAATGGTAAATAGATTGTGT+AGG + chr5_1:42347716-42347735 None:intergenic 25.0%
! TTTACCATTAGAATAAGACT+AGG - chr5_1:42347726-42347745 Msa0731490:intron 25.0%
!! TTGATGATTTATTGGCATTA+GGG + chr5_1:42347926-42347945 None:intergenic 25.0%
!! ATTGATGATTTATTGGCATT+AGG + chr5_1:42347927-42347946 None:intergenic 25.0%
!! GTTCTTTTAGCAAACTATTT+TGG - chr5_1:42347948-42347967 Msa0731490:intron 25.0%
! AATATGGATACTTGTTTACA+AGG + chr5_1:42347978-42347997 None:intergenic 25.0%
!! AGTGTAAAAGCCTTTTAATA+TGG + chr5_1:42347994-42348013 None:intergenic 25.0%
! CACAAAATTACCAAAATAAC+AGG + chr5_1:42348239-42348258 None:intergenic 25.0%
!!! GTTATTTTGGTAATTTTGTG+TGG - chr5_1:42348239-42348258 Msa0731490:intron 25.0%
! TTAGCAAAAGTAATATCAAC+AGG + chr5_1:42348269-42348288 None:intergenic 25.0%
! GCTAAGAATAATGACAAAAT+TGG - chr5_1:42348284-42348303 Msa0731490:intron 25.0%
! AAGAATAATGACAAAATTGG+AGG - chr5_1:42348287-42348306 Msa0731490:intron 25.0%
!! ATGTGGTAAAAAAATGGATT+TGG - chr5_1:42348431-42348450 Msa0731490:CDS 25.0%
! TATACATGTTTAAAGGATCT+TGG + chr5_1:42348640-42348659 None:intergenic 25.0%
! TTTAGTTGTGCTTACTAAAT+GGG + chr5_1:42348797-42348816 None:intergenic 25.0%
! ATTTAGTTGTGCTTACTAAA+TGG + chr5_1:42348798-42348817 None:intergenic 25.0%
!! TTAACTATTTTCTTGGAATC+TGG + chr5_1:42348898-42348917 None:intergenic 25.0%
! AGATTCCAAGAAAATAGTTA+AGG - chr5_1:42348897-42348916 Msa0731490:CDS 25.0%
! TAGAAAATAGTGTTTGTTTG+CGG + chr5_1:42348995-42349014 None:intergenic 25.0%
! ATATCAAATTGCTACATACA+TGG + chr5_1:42349020-42349039 None:intergenic 25.0%
! GGGATATATACAATGTATTT+CGG + chr5_1:42349128-42349147 None:intergenic 25.0%
! TACTAGAAAAAGTTATTTGG+GGG + chr5_1:42349148-42349167 None:intergenic 25.0%
!! AGTTGAGAAATAGTAGTTTT+AGG + chr5_1:42349177-42349196 None:intergenic 25.0%
!! ATATTTTATCATTGCAATGC+AGG - chr5_1:42349211-42349230 Msa0731490:intron 25.0%
!!! GGTATTTTGATGAAATCTTT+TGG + chr5_1:42349262-42349281 None:intergenic 25.0%
! CAATATGACTACTTATGTAA+TGG - chr5_1:42349900-42349919 Msa0731490:CDS 25.0%
! AAAAGACACTTAATATGAGA+CGG + chr5_1:42349986-42350005 None:intergenic 25.0%
!! CTCATATTAAGTGTCTTTTA+AGG - chr5_1:42349987-42350006 Msa0731490:CDS 25.0%
ACAGAGCATGTGTATTTATA+TGG + chr5_1:42344453-42344472 None:intergenic 30.0%
!! AAGTAATGGTGATGGAAAAT+TGG + chr5_1:42344517-42344536 None:intergenic 30.0%
CAGCAGTAAGAATAATTTGA+GGG + chr5_1:42344865-42344884 None:intergenic 30.0%
TTTCAAATGAATCTTGCTAC+TGG - chr5_1:42345107-42345126 Msa0731490:CDS 30.0%
CCATACTTTGAATTTACCAA+AGG + chr5_1:42345428-42345447 None:intergenic 30.0%
CCTTTGGTAAATTCAAAGTA+TGG - chr5_1:42345425-42345444 Msa0731490:intron 30.0%
! CTTCCAATTTTCCAAATCAT+AGG + chr5_1:42345549-42345568 None:intergenic 30.0%
! CTATGATTTGGAAAATTGGA+AGG - chr5_1:42345547-42345566 Msa0731490:intron 30.0%
AAGTCATGATTCAATTTCCA+AGG + chr5_1:42345816-42345835 None:intergenic 30.0%
! TCAGGTTACTTTACAAGATT+TGG - chr5_1:42345979-42345998 Msa0731490:intron 30.0%
TTTCATAGTTGCATACAACA+AGG - chr5_1:42346022-42346041 Msa0731490:intron 30.0%
AGGAAAAAATGGAAGTTCAA+TGG - chr5_1:42346130-42346149 Msa0731490:CDS 30.0%
GGAAAAAATGGAAGTTCAAT+GGG - chr5_1:42346131-42346150 Msa0731490:CDS 30.0%
TTAAATCAGGTATATTGCGT+CGG - chr5_1:42346536-42346555 Msa0731490:CDS 30.0%
CGATTCATATATGAGAAACA+AGG - chr5_1:42346573-42346592 Msa0731490:CDS 30.0%
ACTTTATCAATGGTCTTCAA+TGG - chr5_1:42346815-42346834 Msa0731490:CDS 30.0%
CTTTATCAATGGTCTTCAAT+GGG - chr5_1:42346816-42346835 Msa0731490:CDS 30.0%
!!! TATCACCAACTTTTTTCCAA+TGG + chr5_1:42347002-42347021 None:intergenic 30.0%
!!! TCACTTAGTTGTTTTAGTTC+TGG - chr5_1:42347159-42347178 Msa0731490:intron 30.0%
ATGTTGTACTACCGTTATTT+CGG - chr5_1:42347451-42347470 Msa0731490:intron 30.0%
!!! TGATCAAAATTTTTCAGGGA+TGG - chr5_1:42347605-42347624 Msa0731490:intron 30.0%
!! CAAACCTAGTCTTATTCTAA+TGG + chr5_1:42347733-42347752 None:intergenic 30.0%
! ATAAGACTAGGTTTGTTTGA+TGG - chr5_1:42347738-42347757 Msa0731490:intron 30.0%
! TAAGACTAGGTTTGTTTGAT+GGG - chr5_1:42347739-42347758 Msa0731490:intron 30.0%
AATCCAACCAAACTTCAATA+TGG - chr5_1:42347762-42347781 Msa0731490:intron 30.0%
AATTCTGCCATATTGAAGTT+TGG + chr5_1:42347772-42347791 None:intergenic 30.0%
AAACTTCAATATGGCAGAAT+TGG - chr5_1:42347771-42347790 Msa0731490:intron 30.0%
!! TCTTTAGAGCATACTTGATT+TGG + chr5_1:42347798-42347817 None:intergenic 30.0%
!!! TGTTATTTTGGTTATGGGAT+TGG - chr5_1:42348115-42348134 Msa0731490:intron 30.0%
!! TTCTAAGAAGCCTGTTATTT+TGG - chr5_1:42348226-42348245 Msa0731490:intron 30.0%
!! ATTTTGGTAATTTTGTGTGG+TGG - chr5_1:42348242-42348261 Msa0731490:intron 30.0%
TTAAACTGCTCAATCTTGAT+TGG - chr5_1:42348561-42348580 Msa0731490:intron 30.0%
CACAACTAAATCTCAATTAC+TGG - chr5_1:42348807-42348826 Msa0731490:intron 30.0%
TAAATCTCAATTACTGGATG+CGG - chr5_1:42348813-42348832 Msa0731490:intron 30.0%
ATTTGGTTGAATTGACTAGA+TGG - chr5_1:42348861-42348880 Msa0731490:intron 30.0%
AGGAATAATTTGAGTAGCTT+AGG + chr5_1:42349384-42349403 None:intergenic 30.0%
!! ACTCTGAAACAAGTTTGTAA+TGG + chr5_1:42349489-42349508 None:intergenic 30.0%
! TACAAACTTGTTTCAGAGTT+AGG - chr5_1:42349490-42349509 Msa0731490:intron 30.0%
ATGTCCATTTCTGTAACATT+GGG - chr5_1:42349532-42349551 Msa0731490:intron 30.0%
AATTCCCAATGTTACAGAAA+TGG + chr5_1:42349539-42349558 None:intergenic 30.0%
ACATTGGGAATTACAAATAC+TGG - chr5_1:42349547-42349566 Msa0731490:intron 30.0%
AATTACAAATACTGGAAGCA+TGG - chr5_1:42349555-42349574 Msa0731490:intron 30.0%
! TATGTAATGGAAAGCTTGAT+TGG - chr5_1:42349913-42349932 Msa0731490:CDS 30.0%
TAAGGTTGAGATTGCAAAAG+GGG + chr5_1:42344646-42344665 None:intergenic 35.0%
GTAAGGTTGAGATTGCAAAA+GGG + chr5_1:42344647-42344666 None:intergenic 35.0%
TGTAAGGTTGAGATTGCAAA+AGG + chr5_1:42344648-42344667 None:intergenic 35.0%
! TCATTCCACCATTGATAACT+CGG + chr5_1:42344770-42344789 None:intergenic 35.0%
! GGTGTTTCTTATGTTGGTAA+GGG - chr5_1:42344800-42344819 Msa0731490:CDS 35.0%
! GTGTTTCTTATGTTGGTAAG+GGG - chr5_1:42344801-42344820 Msa0731490:CDS 35.0%
GCAGCAGTAAGAATAATTTG+AGG + chr5_1:42344866-42344885 None:intergenic 35.0%
! CTTCTTTTGATCCCAAACTT+TGG - chr5_1:42344885-42344904 Msa0731490:CDS 35.0%
! AGTTACTGACCTTACTGATT+CGG + chr5_1:42344913-42344932 None:intergenic 35.0%
! TTTTAGTACTTACCCAATCC+CGG - chr5_1:42345002-42345021 Msa0731490:CDS 35.0%
CGACTGAATACTAGAATTGT+TGG + chr5_1:42345069-42345088 None:intergenic 35.0%
AAATGAATCTTGCTACTGGA+AGG - chr5_1:42345111-42345130 Msa0731490:CDS 35.0%
ATGACGTGACATACTATTTC+AGG + chr5_1:42345149-42345168 None:intergenic 35.0%
GTTGTATGAATGAAGGTGAT+TGG - chr5_1:42345281-42345300 Msa0731490:intron 35.0%
TATGGTGTTTCTTATGTGAG+AGG - chr5_1:42345443-42345462 Msa0731490:intron 35.0%
ACACTTTACTGCCTATGATT+TGG - chr5_1:42345535-42345554 Msa0731490:intron 35.0%
! CTGCCTATGATTTGGAAAAT+TGG - chr5_1:42345543-42345562 Msa0731490:intron 35.0%
TCTCTATGGTATATAGTCCT+CGG - chr5_1:42345612-42345631 Msa0731490:intron 35.0%
GTTTAGCATTCTTGAAATCG+TGG - chr5_1:42345671-42345690 Msa0731490:intron 35.0%
! TTATGTCGTTGATGAATCCT+TGG - chr5_1:42345796-42345815 Msa0731490:intron 35.0%
! GGTTACTTTACAAGATTTGG+CGG - chr5_1:42345982-42346001 Msa0731490:intron 35.0%
TGTATGCAACTATGAAACGA+GGG + chr5_1:42346019-42346038 None:intergenic 35.0%
TTGTATGCAACTATGAAACG+AGG + chr5_1:42346020-42346039 None:intergenic 35.0%
AGATTGTAATCTGCACAGTT+TGG + chr5_1:42346094-42346113 None:intergenic 35.0%
! ATCTTTTAACCAATACGGCA+AGG - chr5_1:42346110-42346129 Msa0731490:CDS 35.0%
AACTGTTTCACCAACTAAGT+AGG + chr5_1:42346393-42346412 None:intergenic 35.0%
! ATGATTCTGGCTGTTAAATC+AGG - chr5_1:42346523-42346542 Msa0731490:CDS 35.0%
ATGGCATGCCTCATATATAT+GGG + chr5_1:42346934-42346953 None:intergenic 35.0%
AATGGCATGCCTCATATATA+TGG + chr5_1:42346935-42346954 None:intergenic 35.0%
! TTTTCCAATGGAGACTATGA+TGG + chr5_1:42346990-42347009 None:intergenic 35.0%
AGTCTCCATTGGAAAAAAGT+TGG - chr5_1:42346994-42347013 Msa0731490:intron 35.0%
GATTATAGAACTAGAGACAG+AGG + chr5_1:42347372-42347391 None:intergenic 35.0%
ACGAAACATGTAAATTGCCA+CGG + chr5_1:42347586-42347605 None:intergenic 35.0%
TAAATAGATTGTGTAGGGCA+CGG + chr5_1:42347710-42347729 None:intergenic 35.0%
GTAAATACCCTTGGAGTTAT+AGG - chr5_1:42347900-42347919 Msa0731490:CDS 35.0%
ATGGATACTTGTTTACAAGG+AGG + chr5_1:42347975-42347994 None:intergenic 35.0%
! TTTTAGCAACTTCAACTGCT+CGG + chr5_1:42348085-42348104 None:intergenic 35.0%
! AGAGTTCATTTAGAGTTACC+TGG - chr5_1:42348167-42348186 Msa0731490:intron 35.0%
! ATAAGTTTCTGTTGCTTACC+AGG + chr5_1:42348188-42348207 None:intergenic 35.0%
!! ACAAAATTGGAGGCATCATT+TGG - chr5_1:42348297-42348316 Msa0731490:intron 35.0%
!! CAAAATTGGAGGCATCATTT+GGG - chr5_1:42348298-42348317 Msa0731490:intron 35.0%
AGACAGAAGAAAACTAACCA+GGG + chr5_1:42348385-42348404 None:intergenic 35.0%
AAGACAGAAGAAAACTAACC+AGG + chr5_1:42348386-42348405 None:intergenic 35.0%
GTCAGGTAATATCTGAAGAT+TGG - chr5_1:42348479-42348498 Msa0731490:CDS 35.0%
!! AAATCTCTATCGTTGGTTCA+AGG + chr5_1:42348845-42348864 None:intergenic 35.0%
TTGAACCAACGATAGAGATT+TGG - chr5_1:42348844-42348863 Msa0731490:intron 35.0%
TTCAACCAAATCTCTATCGT+TGG + chr5_1:42348852-42348871 None:intergenic 35.0%
! TGCGACCTTAACTATTTTCT+TGG + chr5_1:42348905-42348924 None:intergenic 35.0%
! TTTTATCATTGCAATGCAGG+AGG - chr5_1:42349214-42349233 Msa0731490:intron 35.0%
TTTATCATTGCAATGCAGGA+GGG - chr5_1:42349215-42349234 Msa0731490:intron 35.0%
TTTGACGGAAATGAAGTTGT+AGG + chr5_1:42349404-42349423 None:intergenic 35.0%
CAATGTTACAGAAATGGACA+TGG + chr5_1:42349533-42349552 None:intergenic 35.0%
CATGTCCATTTCTGTAACAT+TGG - chr5_1:42349531-42349550 Msa0731490:intron 35.0%
TTTCCATTTCTGCCTTTCTT+TGG + chr5_1:42349613-42349632 None:intergenic 35.0%
TGAAGAAGGTGGTTATTTGT+TGG - chr5_1:42349759-42349778 Msa0731490:CDS 35.0%
TTAATATGAGACGGAGGATA+GGG + chr5_1:42349977-42349996 None:intergenic 35.0%
AGGTACATTAGTCGGTGAAT+CGG + chr5_1:42344582-42344601 None:intergenic 40.0%
! GAGTAAGGAGGTACATTAGT+CGG + chr5_1:42344590-42344609 None:intergenic 40.0%
! GAAGAATTTTGTACGTGGGT+TGG + chr5_1:42344624-42344643 None:intergenic 40.0%
! AGGGGAAGAATTTTGTACGT+GGG + chr5_1:42344628-42344647 None:intergenic 40.0%
! AAGGGGAAGAATTTTGTACG+TGG + chr5_1:42344629-42344648 None:intergenic 40.0%
TGGCTCTTTGAGTGATTGTA+AGG + chr5_1:42344664-42344683 None:intergenic 40.0%
TCGGTATACCGAGTTATCAA+TGG - chr5_1:42344759-42344778 Msa0731490:CDS 40.0%
GTATACCGAGTTATCAATGG+TGG - chr5_1:42344762-42344781 Msa0731490:CDS 40.0%
TTGCACGGTGTTTCTTATGT+TGG - chr5_1:42344794-42344813 Msa0731490:CDS 40.0%
CGGTGTTTCTTATGTTGGTA+AGG - chr5_1:42344799-42344818 Msa0731490:CDS 40.0%
GGTAAGGGGATAAGATTGAA+TGG - chr5_1:42344815-42344834 Msa0731490:CDS 40.0%
!! CTGATTCGGTACCAAAGTTT+GGG + chr5_1:42344899-42344918 None:intergenic 40.0%
!! ACTGATTCGGTACCAAAGTT+TGG + chr5_1:42344900-42344919 None:intergenic 40.0%
! ACTTTGGTACCGAATCAGTA+AGG - chr5_1:42344901-42344920 Msa0731490:CDS 40.0%
TTTAGTACTTACCCAATCCC+GGG - chr5_1:42345003-42345022 Msa0731490:CDS 40.0%
TCTCAAACCATATACCATCG+GGG + chr5_1:42345033-42345052 None:intergenic 40.0%
GTCTCAAACCATATACCATC+GGG + chr5_1:42345034-42345053 None:intergenic 40.0%
GGTCTCAAACCATATACCAT+CGG + chr5_1:42345035-42345054 None:intergenic 40.0%
! TGGTATATGGTTTGAGACCT+AGG - chr5_1:42345036-42345055 Msa0731490:CDS 40.0%
AATGAAGGTGATTGGAACTG+AGG - chr5_1:42345289-42345308 Msa0731490:intron 40.0%
ACATATTTAGGGACCCAAGA+TGG - chr5_1:42345372-42345391 Msa0731490:intron 40.0%
CATATTTAGGGACCCAAGAT+GGG - chr5_1:42345373-42345392 Msa0731490:intron 40.0%
ATATTTAGGGACCCAAGATG+GGG - chr5_1:42345374-42345393 Msa0731490:intron 40.0%
TCTTATGTGAGAGGACTTCA+AGG - chr5_1:42345452-42345471 Msa0731490:intron 40.0%
CTTCAAGGTGATTCCTTTGA+AGG - chr5_1:42345467-42345486 Msa0731490:intron 40.0%
! AAGGTGATTCCTTTGAAGGT+GGG - chr5_1:42345471-42345490 Msa0731490:intron 40.0%
AATCAGTTTCCCACCTTCAA+AGG + chr5_1:42345483-42345502 None:intergenic 40.0%
TTTGAAGGTGGGAAACTGAT+TGG - chr5_1:42345482-42345501 Msa0731490:intron 40.0%
TATGGTATATAGTCCTCGGA+TGG - chr5_1:42345616-42345635 Msa0731490:intron 40.0%
CAGAATTAATCATCCATCCG+AGG + chr5_1:42345632-42345651 None:intergenic 40.0%
CGGATGGATGATTAATTCTG+TGG - chr5_1:42345632-42345651 Msa0731490:intron 40.0%
CATTCTTGAAATCGTGGTTG+AGG - chr5_1:42345677-42345696 Msa0731490:intron 40.0%
ATACAACAAGGACGATCTAG+TGG - chr5_1:42346034-42346053 Msa0731490:intron 40.0%
! AGTTTGGAACTCCATTGACA+CGG + chr5_1:42346078-42346097 None:intergenic 40.0%
!!! CCATTTTTTCCTTGCCGTAT+TGG + chr5_1:42346122-42346141 None:intergenic 40.0%
CCAATACGGCAAGGAAAAAA+TGG - chr5_1:42346119-42346138 Msa0731490:CDS 40.0%
TGCTCACACCTTTAATAGAG+TGG + chr5_1:42346367-42346386 None:intergenic 40.0%
! CTCTATTAAAGGTGTGAGCA+TGG - chr5_1:42346367-42346386 Msa0731490:CDS 40.0%
AGGTTATGCAAAAACACCAG+AGG - chr5_1:42346593-42346612 Msa0731490:CDS 40.0%
GTGGGGTCTAATGAAAATGT+AGG + chr5_1:42346909-42346928 None:intergenic 40.0%
TGGCATGCCTCATATATATG+GGG + chr5_1:42346933-42346952 None:intergenic 40.0%
! CCATCATTGATGGCTTAGAA+TGG + chr5_1:42346953-42346972 None:intergenic 40.0%
CCATTCTAAGCCATCAATGA+TGG - chr5_1:42346950-42346969 Msa0731490:intron 40.0%
TAAGCCATCAATGATGGTCA+TGG - chr5_1:42346956-42346975 Msa0731490:intron 40.0%
!! TGGAGACTATGATGGACATT+GGG + chr5_1:42346982-42347001 None:intergenic 40.0%
!! ATGGAGACTATGATGGACAT+TGG + chr5_1:42346983-42347002 None:intergenic 40.0%
ATGTCCATCATAGTCTCCAT+TGG - chr5_1:42346983-42347002 Msa0731490:intron 40.0%
CTGCCATATTGAAGTTTGGT+TGG + chr5_1:42347768-42347787 None:intergenic 40.0%
GGGTATTTACTCTTGGAAGT+GGG + chr5_1:42347890-42347909 None:intergenic 40.0%
! AGGGTATTTACTCTTGGAAG+TGG + chr5_1:42347891-42347910 None:intergenic 40.0%
CTTCCAAGAGTAAATACCCT+TGG - chr5_1:42347891-42347910 Msa0731490:CDS 40.0%
!! ACTCCAAGGGTATTTACTCT+TGG + chr5_1:42347897-42347916 None:intergenic 40.0%
ATTAGGGCCTATAACTCCAA+GGG + chr5_1:42347910-42347929 None:intergenic 40.0%
ATCCAGAACGATAATGTGTC+TGG + chr5_1:42348025-42348044 None:intergenic 40.0%
! TATCGTTCTGGATGTACTGA+TGG - chr5_1:42348032-42348051 Msa0731490:intron 40.0%
ATTGGACCAAAGTCAAGAGA+CGG - chr5_1:42348133-42348152 Msa0731490:intron 40.0%
ACTGCTCAATCTTGATTGGA+TGG - chr5_1:42348565-42348584 Msa0731490:intron 40.0%
TTCACGCAGTTATGTAGTTG+TGG - chr5_1:42348604-42348623 Msa0731490:intron 40.0%
AGACTTTGTAGCTGCAATTG+TGG + chr5_1:42348929-42348948 None:intergenic 40.0%
!! TCTTTTGGGTACCATGTCAT+TGG + chr5_1:42349247-42349266 None:intergenic 40.0%
CTCATTCTCATGTCTGTCAT+TGG + chr5_1:42349283-42349302 None:intergenic 40.0%
!!! GTTTTCGAGTATCGAATGAG+TGG + chr5_1:42349455-42349474 None:intergenic 40.0%
CTGTTTGTGAAGCCAAAGAA+AGG - chr5_1:42349598-42349617 Msa0731490:CDS 40.0%
AAGCCAAAGAAAGGCAGAAA+TGG - chr5_1:42349607-42349626 Msa0731490:CDS 40.0%
TGGAAATCCAGTGAAACAGT+TGG - chr5_1:42349627-42349646 Msa0731490:CDS 40.0%
AATCCAGTGAAACAGTTGGT+AGG - chr5_1:42349631-42349650 Msa0731490:CDS 40.0%
! ATCCAGTGAAACAGTTGGTA+GGG - chr5_1:42349632-42349651 Msa0731490:CDS 40.0%
CTTAGTAGAGCAAATGAGAG+TGG - chr5_1:42349724-42349743 Msa0731490:CDS 40.0%
! AGGTGGTTATTTGTTGGTTG+TGG - chr5_1:42349765-42349784 Msa0731490:CDS 40.0%
! GGTGGTTATTTGTTGGTTGT+GGG - chr5_1:42349766-42349785 Msa0731490:CDS 40.0%
! TTATTTGTTGGTTGTGGGAG+AGG - chr5_1:42349771-42349790 Msa0731490:CDS 40.0%
CTTAATATGAGACGGAGGAT+AGG + chr5_1:42349978-42349997 None:intergenic 40.0%
AGACACTTAATATGAGACGG+AGG + chr5_1:42349983-42350002 None:intergenic 40.0%
CATAAATCCCCTCACAGCAT+GGG - chr5_1:42344491-42344510 Msa0731490:three_prime_UTR 45.0%
AAAATTGGCCCATGCTGTGA+GGG + chr5_1:42344502-42344521 None:intergenic 45.0%
TTGGAGATGTCACAGGAGTA+AGG + chr5_1:42344605-42344624 None:intergenic 45.0%
GAGCCAAAGACATCGTATCA+CGG - chr5_1:42344678-42344697 Msa0731490:CDS 45.0%
TGGTGGAATGAAGCTTTGCA+CGG - chr5_1:42344779-42344798 Msa0731490:CDS 45.0%
TTAGTACTTACCCAATCCCG+GGG - chr5_1:42345004-42345023 Msa0731490:CDS 45.0%
! TGGTTTGAGACCTAGGAATG+TGG - chr5_1:42345043-42345062 Msa0731490:CDS 45.0%
GAATTGTTGGCCACATTCCT+AGG + chr5_1:42345056-42345075 None:intergenic 45.0%
TACAATGCTGGACAAGCTCA+AGG - chr5_1:42345323-42345342 Msa0731490:intron 45.0%
ACAATGCTGGACAAGCTCAA+GGG - chr5_1:42345324-42345343 Msa0731490:intron 45.0%
! AAGCTCAAGGGATGACGTTT+TGG - chr5_1:42345336-42345355 Msa0731490:intron 45.0%
! AGCTCAAGGGATGACGTTTT+GGG - chr5_1:42345337-42345356 Msa0731490:intron 45.0%
AACAGCTGGTGAAGATCCTT+TGG - chr5_1:42345409-42345428 Msa0731490:intron 45.0%
! CAAGGTGATTCCTTTGAAGG+TGG - chr5_1:42345470-42345489 Msa0731490:intron 45.0%
CTAACACAACCCCACAAAAC+CGG - chr5_1:42345701-42345720 Msa0731490:intron 45.0%
ATTCGAAGACATGCACAAGC+CGG + chr5_1:42345723-42345742 None:intergenic 45.0%
TGTGCTTACAACCGTGTCAA+TGG - chr5_1:42346064-42346083 Msa0731490:intron 45.0%
ACATCAGCTACAACATCCTC+TGG + chr5_1:42346612-42346631 None:intergenic 45.0%
CCTCATATATATGGGGAGTG+GGG + chr5_1:42346926-42346945 None:intergenic 45.0%
GCCTCATATATATGGGGAGT+GGG + chr5_1:42346927-42346946 None:intergenic 45.0%
TGCCTCATATATATGGGGAG+TGG + chr5_1:42346928-42346947 None:intergenic 45.0%
!! GCACGGTCGATTTGAGATAT+GGG + chr5_1:42347693-42347712 None:intergenic 45.0%
TTCTTGCAGCTTCAAGAGCA+AGG + chr5_1:42347830-42347849 None:intergenic 45.0%
TCTTGGAAGTGGGAGAATTG+AGG + chr5_1:42347880-42347899 None:intergenic 45.0%
CATTAGGGCCTATAACTCCA+AGG + chr5_1:42347911-42347930 None:intergenic 45.0%
AGAACGATAATGTGTCTGGC+TGG + chr5_1:42348021-42348040 None:intergenic 45.0%
AGCCAGACACATTATCGTTC+TGG - chr5_1:42348020-42348039 Msa0731490:intron 45.0%
GTGTTTCCGTCTCTTGACTT+TGG + chr5_1:42348142-42348161 None:intergenic 45.0%
!! ATCATTTGGGCTGGTTATCC+TGG - chr5_1:42348311-42348330 Msa0731490:intron 45.0%
! GTGTTTGGTGACTATAACCC+TGG - chr5_1:42348365-42348384 Msa0731490:CDS 45.0%
TGCTTACTAAATGGGTGCAC+AGG + chr5_1:42348789-42348808 None:intergenic 45.0%
ATGAGAGCTGATCCATCATC+AGG - chr5_1:42349298-42349317 Msa0731490:intron 45.0%
TAGAAACGGTAGGTTCTACC+GGG + chr5_1:42349328-42349347 None:intergenic 45.0%
GTAGAAACGGTAGGTTCTAC+CGG + chr5_1:42349329-42349348 None:intergenic 45.0%
AGAACCTACCGTTTCTACAC+AGG - chr5_1:42349331-42349350 Msa0731490:intron 45.0%
CCTTTGGACCTGTGTAGAAA+CGG + chr5_1:42349342-42349361 None:intergenic 45.0%
GGTCCAAAGGTCTACGAATT+CGG - chr5_1:42349352-42349371 Msa0731490:intron 45.0%
TAGCCGAATTCGTAGACCTT+TGG + chr5_1:42349358-42349377 None:intergenic 45.0%
AAGGTCTACGAATTCGGCTA+TGG - chr5_1:42349358-42349377 Msa0731490:intron 45.0%
GTATCGAATGAGTGGTTGAC+TGG + chr5_1:42349447-42349466 None:intergenic 45.0%
! ACAAATACTGGAAGCATGGC+TGG - chr5_1:42349559-42349578 Msa0731490:intron 45.0%
! CAAATACTGGAAGCATGGCT+GGG - chr5_1:42349560-42349579 Msa0731490:intron 45.0%
AACCCTACCAACTGTTTCAC+TGG + chr5_1:42349637-42349656 None:intergenic 45.0%
! AGCAAATGAGAGTGGTGTCA+AGG - chr5_1:42349732-42349751 Msa0731490:CDS 45.0%
! AAATGAGAGTGGTGTCAAGG+TGG - chr5_1:42349735-42349754 Msa0731490:CDS 45.0%
!! AATTTAATTATATTAAAATC+GGG + chr5_1:42345173-42345192 None:intergenic 5.0%
!!! TTTTATTGTTTATTTTATAT+TGG - chr5_1:42348727-42348746 Msa0731490:intron 5.0%
!!! TTTATTGTTTATTTTATATT+GGG - chr5_1:42348728-42348747 Msa0731490:intron 5.0%
GCATAAATCCCCTCACAGCA+TGG - chr5_1:42344490-42344509 Msa0731490:three_prime_UTR 50.0%
AAATTGGCCCATGCTGTGAG+GGG + chr5_1:42344501-42344520 None:intergenic 50.0%
GAAAATTGGCCCATGCTGTG+AGG + chr5_1:42344503-42344522 None:intergenic 50.0%
GTGAATCGGCATGAACGAGT+TGG + chr5_1:42344568-42344587 None:intergenic 50.0%
GAGATGTCACAGGAGTAAGG+AGG + chr5_1:42344602-42344621 None:intergenic 50.0%
GAGCCGTGATACGATGTCTT+TGG + chr5_1:42344684-42344703 None:intergenic 50.0%
CATCGTATCACGGCTCACAT+TGG - chr5_1:42344688-42344707 Msa0731490:CDS 50.0%
TAACTCGGTATACCGAGTCG+AGG + chr5_1:42344755-42344774 None:intergenic 50.0%
ATATACCATCGGGGAAACCC+CGG + chr5_1:42345024-42345043 None:intergenic 50.0%
GTGATTGGAACTGAGGCTAG+AGG - chr5_1:42345296-42345315 Msa0731490:intron 50.0%
! GCTAGAGGAGTGTACAATGC+TGG - chr5_1:42345311-42345330 Msa0731490:intron 50.0%
CTTGTCCTCTTCCCCATCTT+GGG + chr5_1:42345388-42345407 None:intergenic 50.0%
TCTTGTCCTCTTCCCCATCT+TGG + chr5_1:42345389-42345408 None:intergenic 50.0%
GGAAGAGGACAAGAAACAGC+TGG - chr5_1:42345395-42345414 Msa0731490:intron 50.0%
GAAGGTGGGAAACTGATTGG+AGG - chr5_1:42345485-42345504 Msa0731490:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + chr5_1:42345703-42345722 None:intergenic 50.0%
!! ATGCACAAGCCGGTTTTGTG+GGG + chr5_1:42345713-42345732 None:intergenic 50.0%
!! CATGCACAAGCCGGTTTTGT+GGG + chr5_1:42345714-42345733 None:intergenic 50.0%
!! ACATGCACAAGCCGGTTTTG+TGG + chr5_1:42345715-42345734 None:intergenic 50.0%
GTGAGCATGGCCTACTTAGT+TGG - chr5_1:42346380-42346399 Msa0731490:CDS 50.0%
GTAGCTGATGTACTTCGAGC+TGG - chr5_1:42346621-42346640 Msa0731490:CDS 50.0%
CCCCACTCCCCATATATATG+AGG - chr5_1:42346923-42346942 Msa0731490:intron 50.0%
TGGGCCATGACCATCATTGA+TGG + chr5_1:42346963-42346982 None:intergenic 50.0%
TCAGGGATGGATGTAGAGTG+TGG - chr5_1:42347618-42347637 Msa0731490:intron 50.0%
!! GGCACGGTCGATTTGAGATA+TGG + chr5_1:42347694-42347713 None:intergenic 50.0%
CAGCTTCAAGAGCAAGGTCT+AGG + chr5_1:42347824-42347843 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGAAG+TGG - chr5_1:42347831-42347850 Msa0731490:intron 50.0%
!! ATTGGAGGCATCATTTGGGC+TGG - chr5_1:42348302-42348321 Msa0731490:intron 50.0%
GCTGGTTATCCTGGTGAAAC+TGG - chr5_1:42348320-42348339 Msa0731490:intron 50.0%
GGTTATCCTGGTGAAACTGG+TGG - chr5_1:42348323-42348342 Msa0731490:intron 50.0%
ATCCTGGTGAAACTGGTGGA+AGG - chr5_1:42348327-42348346 Msa0731490:intron 50.0%
TCCTGGTGAAACTGGTGGAA+GGG - chr5_1:42348328-42348347 Msa0731490:intron 50.0%
GAGGGAGACTACCAATGACA+TGG - chr5_1:42349233-42349252 Msa0731490:intron 50.0%
GATCCATCATCAGGCTATCC+CGG - chr5_1:42349307-42349326 Msa0731490:intron 50.0%
TGGACCTGTGTAGAAACGGT+AGG + chr5_1:42349338-42349357 None:intergenic 50.0%
CCGTTTCTACACAGGTCCAA+AGG - chr5_1:42349339-42349358 Msa0731490:intron 50.0%
GGCTTCACAAACAGCAACAC+AGG + chr5_1:42349592-42349611 None:intergenic 50.0%
! GGTAGGGTTTGAGAGTGTGA+CGG - chr5_1:42349648-42349667 Msa0731490:CDS 50.0%
! TTTGAGAGTGTGACGGTGGA+AGG - chr5_1:42349655-42349674 Msa0731490:CDS 50.0%
GAGGTGGAAAGGGTGAAGTT+GGG - chr5_1:42349677-42349696 Msa0731490:CDS 50.0%
GGTGTCAAGGTGGTTGAAGA+AGG - chr5_1:42349745-42349764 Msa0731490:CDS 50.0%
GTCAAGGTGGTTGAAGAAGG+TGG - chr5_1:42349748-42349767 Msa0731490:CDS 50.0%
!! ACGTGGGTTGGAGATGTCAC+AGG + chr5_1:42344612-42344631 None:intergenic 55.0%
ATACCGAGTCGAGGAATGGC+AGG + chr5_1:42344746-42344765 None:intergenic 55.0%
CGGTATACCGAGTCGAGGAA+TGG + chr5_1:42344750-42344769 None:intergenic 55.0%
TATACCATCGGGGAAACCCC+GGG + chr5_1:42345023-42345042 None:intergenic 55.0%
GGGGTTTCCCCGATGGTATA+TGG - chr5_1:42345023-42345042 Msa0731490:CDS 55.0%
TGAAACTGGTGGAAGGGCTC+TGG - chr5_1:42348334-42348353 Msa0731490:intron 55.0%
! GCTCTGGCTCAGGTTGTGTT+TGG - chr5_1:42348350-42348369 Msa0731490:CDS 55.0%
! CAGTGTTACTGCACGCAGTC+AGG - chr5_1:42348462-42348481 Msa0731490:CDS 55.0%
CTACCGGGATAGCCTGATGA+TGG + chr5_1:42349313-42349332 None:intergenic 55.0%
! AGGGTTTGAGAGTGTGACGG+TGG - chr5_1:42349651-42349670 Msa0731490:CDS 55.0%
ACGGTGGAAGGAGGTGGAAA+GGG - chr5_1:42349667-42349686 Msa0731490:CDS 55.0%
GGAGGTGGAAAGGGTGAAGT+TGG - chr5_1:42349676-42349695 Msa0731490:CDS 55.0%
GCTCCTGCCATTCCTCGACT+CGG - chr5_1:42344740-42344759 Msa0731490:CDS 60.0%
ATCGGGGAAACCCCGGGATT+GGG + chr5_1:42345017-42345036 None:intergenic 60.0%
AGGGACCCAAGATGGGGAAG+AGG - chr5_1:42345380-42345399 Msa0731490:intron 60.0%
GCCCTTCCACCAGTTTCACC+AGG + chr5_1:42348332-42348351 None:intergenic 60.0%
! GAGAGTGTGACGGTGGAAGG+AGG - chr5_1:42349658-42349677 Msa0731490:CDS 60.0%
AGTGTGACGGTGGAAGGAGG+TGG - chr5_1:42349661-42349680 Msa0731490:CDS 60.0%
GACGGTGGAAGGAGGTGGAA+AGG - chr5_1:42349666-42349685 Msa0731490:CDS 60.0%
CATCGGGGAAACCCCGGGAT+TGG + chr5_1:42345018-42345037 None:intergenic 65.0%
CAATCCCGGGGTTTCCCCGA+TGG - chr5_1:42345016-42345035 Msa0731490:CDS 65.0%
! TGGTGGAAGGGCTCTGGCTC+AGG - chr5_1:42348340-42348359 Msa0731490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 42344433 42350059 42344433 ID=Msa0731490;Name=Msa0731490
chr5_1 mRNA 42344433 42350059 42344433 ID=Msa0731490-mRNA-1;Parent=Msa0731490;Name=Msa0731490-mRNA-1;_AED=0.26;_eAED=0.26;_QI=31|1|1|1|1|1|6|237|794
chr5_1 exon 42344433 42345259 42344433 ID=Msa0731490-mRNA-1:exon:12248;Parent=Msa0731490-mRNA-1
chr5_1 exon 42346106 42346870 42346106 ID=Msa0731490-mRNA-1:exon:12247;Parent=Msa0731490-mRNA-1
chr5_1 exon 42347850 42347947 42347850 ID=Msa0731490-mRNA-1:exon:12246;Parent=Msa0731490-mRNA-1
chr5_1 exon 42348340 42348509 42348340 ID=Msa0731490-mRNA-1:exon:12245;Parent=Msa0731490-mRNA-1
chr5_1 exon 42348894 42349196 42348894 ID=Msa0731490-mRNA-1:exon:12244;Parent=Msa0731490-mRNA-1
chr5_1 exon 42349570 42350059 42349570 ID=Msa0731490-mRNA-1:exon:12243;Parent=Msa0731490-mRNA-1
chr5_1 five_prime_UTR 42350029 42350059 42350029 ID=Msa0731490-mRNA-1:five_prime_utr;Parent=Msa0731490-mRNA-1
chr5_1 CDS 42349570 42350028 42349570 ID=Msa0731490-mRNA-1:cds;Parent=Msa0731490-mRNA-1
chr5_1 CDS 42348894 42349196 42348894 ID=Msa0731490-mRNA-1:cds;Parent=Msa0731490-mRNA-1
chr5_1 CDS 42348340 42348509 42348340 ID=Msa0731490-mRNA-1:cds;Parent=Msa0731490-mRNA-1
chr5_1 CDS 42347850 42347947 42347850 ID=Msa0731490-mRNA-1:cds;Parent=Msa0731490-mRNA-1
chr5_1 CDS 42346106 42346870 42346106 ID=Msa0731490-mRNA-1:cds;Parent=Msa0731490-mRNA-1
chr5_1 CDS 42344670 42345259 42344670 ID=Msa0731490-mRNA-1:cds;Parent=Msa0731490-mRNA-1
chr5_1 three_prime_UTR 42344433 42344669 42344433 ID=Msa0731490-mRNA-1:three_prime_utr;Parent=Msa0731490-mRNA-1
Gene Sequence

>Msa0731490

ATGCTCTGTAATCTGTTCAGCACGTTGCATAAATCCCCTCACAGCATGGGCCAATTTTCCATCACCATTACTTTCATTTTTCTCTTCTTAACTCGCTACAACCAACTCGTTCATGCCGATTCACCGACTAATGTACCTCCTTACTCCTGTGACATCTCCAACCCACGTACAAAATTCTTCCCCTTTTGCAATCTCAACCTTACAATCACTCAAAGAGCCAAAGACATCGTATCACGGCTCACATTGGATGAGAAAATCTCTCAACTCGTTAACACAGCTCCTGCCATTCCTCGACTCGGTATACCGAGTTATCAATGGTGGAATGAAGCTTTGCACGGTGTTTCTTATGTTGGTAAGGGGATAAGATTGAATGGTAGTGTTACAGCTGCAACTAGTTTCCCTCAAATTATTCTTACTGCTGCTTCTTTTGATCCCAAACTTTGGTACCGAATCAGTAAGGTGATTGGAACTGAGGCTAGAGGAGTGTACAATGCTGGACAAGCTCAAGGGATGACGTTTTGGGCACCAAACATAAACATATTTAGGGACCCAAGATGGGGAAGAGGACAAGAAACAGCTGGTGAAGATCCTTTGGTAAATTCAAAGTATGGTGTTTCTTATGTGAGAGGACTTCAAGGTGATTCCTTTGAAGGTGGGAAACTGATTGGAGGTCGTCTTAAAGCTTCTGCTTGTTGCAAACACTTTACTGCCTATGATTTGGAAAATTGGAAGGGTGTGAATCGTTATGTTTTTGATGCCAAAGTTACTTTACAAGATTTGGCGGATACGTATCAACCCTCGTTTCATAGTTGCATACAACAAGGACGATCTAGTGGAATAATGTGTGCTTACAACCGTGTCAATGGAGTTCCAAACTGTGCAGATTACAATCTTTTAACCAATACGGCAAGGAAAAAATGGAAGTTCAATGGGTATATTGCGTCGGATTGTGACGCAGTTCGATTCATATATGAGAAACAAGGTTATGCAAAAACACCAGAGGATGTTGTAGCTGATGTACTTCGAGCTGGGATGGATGTAGAGTGTGGTGATTACATGACAAAGCATGCAAAGTCAGCAGTATTACAAAAAAAAATTCCCATATCTCAAATCGACCGTGCCCTACACAATCTATTTACCATTAGAATAAGACTAGGTTTGTTTGATGGGAATCCAACCAAACTTCAATATGGCAGAATTGGTCCAAATCAAGTATGCTCTAAAGAAAACCTAGACCTTGCTCTTGAAGCTGCAAGAAGTGGCATTGTACTTTTAAAAAACACTGCCTCAATTCTCCCACTTCCAAGAGTAAATACCCTTGGAGTTATAGGCCCTAATGCCAATAAATCATCAATAGTTCTTTTAGCAAACTATTTTGGTCCTCCTTGTAAACAAGTATCCATATTAAAAGGCTTTTACACTTATGCCAGCCAGACACATTATCGTTCTGGATGTACTGATGGAGTAAAGTGTGCTTCAGCTGAAATTGACCGAGCAGTTGAAGTTGCTAAAATAAGTGATTATGTTATTTTGGTTATGGGATTGGACCAAAGTCAAGAGACGGAAACACTTGATAGAGTTCATTTAGAGTTACCTGGTAAGCAACAGAAACTTATTAACAGTGTTGCTAAAGCTTCTAAGAAGCCTGTTATTTTGGTAATTTTGTGTGGTGGTCCTGTTGATATTACTTTTGCTAAGAATAATGACAAAATTGGAGGCATCATTTGGGCTGGTTATCCTGGTGAAACTGGTGGAAGGGCTCTGGCTCAGGTTGTGTTTGGTGACTATAACCCTGGAGGGAGACTACCAATGACATGGTACCCAAAAGATTTCATCAAAATACCAATGACAGACATGAGAATGAGAGCTGATCCATCATCAGGCTATCCCGGTAGAACCTACCGTTTCTACACAGGTCCAAAGGTCTACGAATTCGGCTATGGCCTAAGCTACTCAAATTATTCCTACAACTTCATTTCCGTCAAAAACAACAACCTTCACATCAACCAGTCAACCACTCATTCGATACTCGAAAACTCTGAAACAATCCATTACAAACTTGTTTCAGAGTTAGGCAAAAAAGCATGTAAAACCATGTCCATTTCTGTAACATTGGGAATTACAAATACTGGAAGCATGGCTGGGAAACATCCTGTGTTGCTGTTTGTGAAGCCAAAGAAAGGCAGAAATGGAAATCCAGTGAAACAGTTGGTAGGGTTTGAGAGTGTGACGGTGGAAGGAGGTGGAAAGGGTGAAGTTGGGTTCGAAGTTAGTGTTTGTGAGCATCTTAGTAGAGCAAATGAGAGTGGTGTCAAGGTGGTTGAAGAAGGTGGTTATTTGTTGGTTGTGGGAGAGGAAGAGTACTCAATAAGTATCACTCTTTGA
Protein sequence

>Msa0731490

MLCNLFSTLHKSPHSMGQFSITITFIFLFLTRYNQLVHADSPTNVPPYSCDISNPRTKFFPFCNLNLTITQRAKDIVSRLTLDEKISQLVNTAPAIPRLGIPSYQWWNEALHGVSYVGKGIRLNGSVTAATSFPQIILTAASFDPKLWYRISKVIGTEARGVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPLVNSKYGVSYVRGLQGDSFEGGKLIGGRLKASACCKHFTAYDLENWKGVNRYVFDAKVTLQDLADTYQPSFHSCIQQGRSSGIMCAYNRVNGVPNCADYNLLTNTARKKWKFNGYIASDCDAVRFIYEKQGYAKTPEDVVADVLRAGMDVECGDYMTKHAKSAVLQKKIPISQIDRALHNLFTIRIRLGLFDGNPTKLQYGRIGPNQVCSKENLDLALEAARSGIVLLKNTASILPLPRVNTLGVIGPNANKSSIVLLANYFGPPCKQVSILKGFYTYASQTHYRSGCTDGVKCASAEIDRAVEVAKISDYVILVMGLDQSQETETLDRVHLELPGKQQKLINSVAKASKKPVILVILCGGPVDITFAKNNDKIGGIIWAGYPGETGGRALAQVVFGDYNPGGRLPMTWYPKDFIKIPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSNYSYNFISVKNNNLHINQSTTHSILENSETIHYKLVSELGKKACKTMSISVTLGITNTGSMAGKHPVLLFVKPKKGRNGNPVKQLVGFESVTVEGGGKGEVGFEVSVCEHLSRANESGVKVVEEGGYLLVVGEEEYSISITL*