AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771710 MtrunA17_Chr5g0425431 96.667 780 25 1 16 794 1 780 0.0 1561
Msa0771710 MtrunA17_Chr5g0425451 94.501 782 40 1 16 794 1 782 0.0 1509
Msa0771710 MtrunA17_Chr5g0425471 91.304 782 65 1 16 794 1 782 0.0 1461
Msa0771710 MtrunA17_Chr5g0425531 84.204 785 118 3 16 794 1 785 0.0 1349
Msa0771710 MtrunA17_Chr3g0115601 69.987 773 225 3 23 794 10 776 0.0 1168
Msa0771710 MtrunA17_Chr5g0411571 48.875 800 367 12 16 794 4 782 0.0 781
Msa0771710 MtrunA17_Chr1g0207281 49.800 751 360 12 42 784 34 775 0.0 743
Msa0771710 MtrunA17_Chr2g0278761 48.413 756 361 12 48 794 40 775 0.0 727
Msa0771710 MtrunA17_Chr7g0269871 47.278 753 370 12 48 792 28 761 0.0 722
Msa0771710 MtrunA17_Chr1g0194841 46.401 778 387 10 20 792 3 755 0.0 722
Msa0771710 MtrunA17_Chr2g0294751 46.675 782 384 14 16 792 1 754 0.0 722
Msa0771710 MtrunA17_Chr4g0050591 46.488 783 391 13 20 794 12 774 0.0 713
Msa0771710 MtrunA17_Chr6g0461231 27.803 669 356 30 48 650 14 621 3.39e-42 163
Msa0771710 MtrunA17_Chr6g0461191 27.736 667 355 29 50 650 16 621 4.91e-42 162
Msa0771710 MtrunA17_Chr3g0104081 27.695 603 344 22 62 607 22 589 1.42e-40 158
Msa0771710 MtrunA17_Chr3g0118971 27.015 670 364 29 52 656 18 627 2.21e-40 158
Msa0771710 MtrunA17_Chr2g0292341 27.619 630 331 26 69 625 37 614 3.10e-40 158
Msa0771710 MtrunA17_Chr6g0461221 26.786 672 367 28 48 654 15 626 1.74e-39 155
Msa0771710 MtrunA17_Chr6g0461211 28.130 647 340 29 69 650 35 621 5.34e-39 154
Msa0771710 MtrunA17_Chr7g0253561 27.477 666 334 30 62 650 4 597 8.85e-38 150
Msa0771710 MtrunA17_Chr5g0429581 26.412 602 350 22 64 607 7 573 1.50e-36 146
Msa0771710 MtrunA17_Chr5g0429541 26.351 592 339 21 69 607 12 559 1.17e-33 137
Msa0771710 MtrunA17_Chr7g0253551 27.740 447 231 20 59 448 26 437 1.90e-26 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771710 AT1G78060.1 63.214 753 266 7 46 794 22 767 0.0 1009
Msa0771710 AT5G10560.1 50.195 771 356 9 46 794 28 792 0.0 787
Msa0771710 AT3G19620.1 50.469 747 345 14 48 784 27 758 0.0 749
Msa0771710 AT5G09730.1 48.399 781 382 14 19 794 9 773 0.0 733
Msa0771710 AT5G64570.1 48.134 777 379 12 27 794 23 784 0.0 726
Msa0771710 AT1G02640.1 46.271 791 377 14 14 792 4 758 0.0 716
Msa0771710 AT5G49360.1 47.059 782 379 17 21 792 14 770 0.0 699
Msa0771710 AT5G64570.3 51.557 578 270 8 27 602 23 592 0.0 604
Msa0771710 AT5G64570.2 48.206 641 309 11 162 794 1 626 0.0 596
Msa0771710 AT5G09700.1 44.785 489 257 7 312 794 45 526 2.80e-134 409
Msa0771710 AT3G47040.4 26.656 649 368 26 62 653 10 607 2.33e-41 161
Msa0771710 AT3G47000.1 26.332 657 354 26 62 650 10 604 6.40e-40 156
Msa0771710 AT3G47040.1 25.826 666 377 27 62 653 10 632 1.33e-38 153
Msa0771710 AT3G47010.1 27.214 621 360 26 62 625 11 596 1.91e-38 152
Msa0771710 AT5G04885.3 26.324 623 357 25 68 629 36 617 2.63e-38 152
Msa0771710 AT5G04885.1 26.324 623 357 25 68 629 36 617 2.63e-38 152
Msa0771710 AT5G04885.2 26.324 623 357 25 68 629 53 634 3.57e-38 152
Msa0771710 AT3G47050.1 26.754 613 348 24 58 609 6 578 3.72e-37 148
Msa0771710 AT3G47010.2 26.966 623 358 28 62 625 11 595 8.17e-37 147
Msa0771710 AT5G20950.2 26.308 650 349 25 72 654 36 622 1.37e-35 144
Msa0771710 AT5G20950.1 26.308 650 349 25 72 654 36 622 1.37e-35 144
Msa0771710 AT5G20940.1 26.176 638 353 25 72 649 42 621 4.14e-34 139
Msa0771710 AT3G62710.1 26.699 618 337 29 74 649 105 648 2.79e-33 137
Msa0771710 AT5G20950.3 29.017 417 219 17 72 436 114 505 5.97e-33 136
Msa0771710 AT3G47000.3 28.868 433 220 17 62 436 10 412 3.63e-31 128
Msa0771710 AT3G47040.3 28.966 435 242 17 62 448 10 425 3.84e-31 127
Msa0771710 AT3G47040.2 24.779 678 377 30 62 653 10 640 1.53e-29 125
Msa0771710 AT3G47010.4 27.294 436 248 18 62 448 11 426 2.77e-28 119
Msa0771710 AT3G47000.2 25.910 467 282 19 206 650 3 427 7.39e-26 111
Msa0771710 AT3G47010.3 27.540 443 266 21 208 625 5 417 1.38e-25 110
Msa0771710 AT3G47050.2 26.064 376 218 13 58 389 6 365 1.37e-22 101

Find 206 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTATTGATGATTTAT+TGG 0.145046 5_2:+44879177 None:intergenic
AATAAGTGATTATGTTATTT+TGG 0.156153 5_2:-44879005 Msa0771710:CDS
CACCAAACATAAACATATTT+AGG 0.158019 5_2:-44881760 Msa0771710:CDS
TTCTAAGAAGCCTGTTATTT+TGG 0.174390 5_2:-44878882 Msa0771710:CDS
CTGCCTATGATTTGGAAAAT+TGG 0.179123 5_2:-44881577 Msa0771710:CDS
TTTGAAGGTGGGAAATTAAT+TGG 0.184712 5_2:-44881638 Msa0771710:CDS
GCTAAGAATAATGACAAAAT+TGG 0.212120 5_2:-44878824 Msa0771710:CDS
TTTCCATTTCTACCTTTCTT+TGG 0.223144 5_2:+44877495 None:intergenic
TCAGGTTACTTTACAAGATT+TGG 0.243170 5_2:-44881141 Msa0771710:intron
TTGATGATTTATTGGCATTA+GGG 0.250324 5_2:+44879185 None:intergenic
AAGCCCAAGGGATGACGTTT+TGG 0.261397 5_2:-44881784 Msa0771710:CDS
TCTTGTCCTCTTCCCCATCT+TGG 0.274411 5_2:+44881734 None:intergenic
AAACAAGTATCCATATTAAA+AGG 0.276787 5_2:-44879127 Msa0771710:CDS
ACACTTTACTGCCTATGATT+TGG 0.277559 5_2:-44881585 Msa0771710:CDS
GTAAATACCCTTGGAGTTAT+AGG 0.279725 5_2:-44879208 Msa0771710:CDS
ACAAAATTGGAGGCATCATT+TGG 0.281644 5_2:-44878811 Msa0771710:CDS
ACTGATTCGGTACCAAAGTT+TGG 0.290827 5_2:+44882351 None:intergenic
ATTGATGATTTATTGGCATT+AGG 0.294469 5_2:+44879184 None:intergenic
TCTTTAGAGCATACTTGATT+TGG 0.301730 5_2:+44879313 None:intergenic
CTTGTCCTCTTCCCCATCTT+GGG 0.306397 5_2:+44881735 None:intergenic
TATGTAATGGAAAGCTTGAT+TGG 0.321978 5_2:-44877190 Msa0771710:three_prime_UTR
AATTCTGCCATATTGAAGTT+TGG 0.332874 5_2:+44879339 None:intergenic
GGAGGTGGAAAGGGTGAAGT+TGG 0.339877 5_2:-44877429 Msa0771710:CDS
TACAAACTTGTTTCAGAGTT+AGG 0.340365 5_2:-44877615 Msa0771710:CDS
AAACTTCAATATGGCAGAAT+TGG 0.347201 5_2:-44879337 Msa0771710:CDS
CACAAAATTACCAAAATAAC+AGG 0.354358 5_2:+44878872 None:intergenic
CTGATTCGGTACCAAAGTTT+GGG 0.355066 5_2:+44882352 None:intergenic
CCTTTGGTAAATTCAAAGTA+TGG 0.359897 5_2:-44881695 Msa0771710:CDS
ACATTGGGAATTACAAATAC+TGG 0.364595 5_2:-44877558 Msa0771710:CDS
CTTCAAGGTGATTCCTTTGA+AGG 0.366164 5_2:-44881653 Msa0771710:CDS
ATGCATATTAATTTACTCAT+TGG 0.369435 5_2:+44877072 None:intergenic
TCCCTAAATATGTTTATGTT+TGG 0.371836 5_2:+44881758 None:intergenic
CATGTCCATTTCTGTAACAT+TGG 0.372834 5_2:-44877574 Msa0771710:CDS
TGGCTCTTTGAGTGATTGTA+AGG 0.376423 5_2:+44882587 None:intergenic
GGCACGGTCAATTTGAGATA+TGG 0.377737 5_2:+44879417 None:intergenic
AAGTAATGGTGATGGAAAAT+TGG 0.378794 5_2:+44882734 None:intergenic
ATCATTTGGGCTGGTTATCC+TGG 0.383440 5_2:-44878797 Msa0771710:CDS
GCTGGTTATCCTGGTGAAAC+TGG 0.384326 5_2:-44878788 Msa0771710:CDS
GGTCCAAAGGTCTACGAATT+CGG 0.387773 5_2:-44877753 Msa0771710:CDS
TTTGACGGAAATGAAGTTGT+AGG 0.388452 5_2:+44877704 None:intergenic
ACAAATACTGGAAGCATGGC+TGG 0.392102 5_2:-44877546 Msa0771710:CDS
CGGTGTCTCTTATGTTGGTA+AGG 0.395796 5_2:-44882449 Msa0771710:CDS
AATTCCCAATGTTACAGAAA+TGG 0.398418 5_2:+44877569 None:intergenic
ACCAAACATAAACATATTTA+GGG 0.398770 5_2:-44881759 Msa0771710:CDS
AGATTGTAATCTGCACAGTT+TGG 0.398988 5_2:+44881029 None:intergenic
AATCCAACCAAACTTCAATA+TGG 0.399490 5_2:-44879346 Msa0771710:CDS
TGGTGGAAGGGCTCTGGCTC+AGG 0.399913 5_2:-44878768 Msa0771710:CDS
AGGAATAATTTGAGTAGCTT+AGG 0.401616 5_2:+44877724 None:intergenic
CAAACCTAGTCTTATTCTAA+TGG 0.402033 5_2:+44879378 None:intergenic
TGTAAGGTTGAGATTGCAAA+AGG 0.402973 5_2:+44882603 None:intergenic
GCTCTGGCTCAGGTTGTGTT+TGG 0.406314 5_2:-44878758 Msa0771710:CDS
TAGCCGAATTCGTAGACCTT+TGG 0.407677 5_2:+44877750 None:intergenic
ATAAGACTAGGTTTGTTTGA+TGG 0.411429 5_2:-44879370 Msa0771710:CDS
ACTCCAAGGGTATTTACTCT+TGG 0.414446 5_2:+44879214 None:intergenic
AACAGCTGGTGAAGATCCTT+TGG 0.418172 5_2:-44881711 Msa0771710:CDS
AACCCTACCAACTGTTTCAC+TGG 0.418928 5_2:+44877471 None:intergenic
TATTTATATTGAGCAATCAT+AGG 0.419428 5_2:+44882810 None:intergenic
AGGTGGTTATTTGTTGGTTG+TGG 0.420306 5_2:-44877340 Msa0771710:CDS
ATAAGTTTCTGTTGCTTACC+AGG 0.420753 5_2:+44878923 None:intergenic
ATCAAGTAAAGAATAACTAA+TGG 0.425783 5_2:-44877248 Msa0771710:three_prime_UTR
GTGCCCAAAACGTCATCCCT+TGG 0.426062 5_2:+44881780 None:intergenic
TGAAACTGGTGGAAGGGCTC+TGG 0.429489 5_2:-44878774 Msa0771710:CDS
TAAGACTAGGTTTGTTTGAT+GGG 0.430129 5_2:-44879369 Msa0771710:CDS
AATTAATTTCCCACCTTCAA+AGG 0.433759 5_2:+44881640 None:intergenic
CAGCTTCAAGAGCAAGGTCT+AGG 0.436293 5_2:+44879287 None:intergenic
AAGCCAAAGAAAGGTAGAAA+TGG 0.439382 5_2:-44877498 Msa0771710:CDS
CAAAATTGGAGGCATCATTT+GGG 0.439628 5_2:-44878810 Msa0771710:CDS
CTCATTCTCATGTCTGTCAT+TGG 0.443342 5_2:+44877825 None:intergenic
TGCCCAAAACGTCATCCCTT+GGG 0.443887 5_2:+44881781 None:intergenic
TTTGAGAGTGTGACGGTGGA+AGG 0.447503 5_2:-44877450 Msa0771710:CDS
TTTCCCTCAAATCATTCTTA+CGG 0.448886 5_2:-44882389 Msa0771710:CDS
TGAAGAAGGTGGTTATTTGT+TGG 0.451987 5_2:-44877346 Msa0771710:CDS
GAGGTGGAAAGGGTGAAGTT+GGG 0.452463 5_2:-44877428 Msa0771710:CDS
GTGTTTGGTGACTATAACCC+TGG 0.452505 5_2:-44878743 Msa0771710:intron
AGCCAGACACATTATCGTTC+TGG 0.456155 5_2:-44879088 Msa0771710:CDS
ATGTCCATTTCTGTAACATT+GGG 0.459363 5_2:-44877573 Msa0771710:CDS
AGTTACTGACCTTACTGATT+CGG 0.462510 5_2:+44882338 None:intergenic
ATATGACTCTACTTATGTAA+TGG 0.464666 5_2:-44877203 Msa0771710:three_prime_UTR
ACATATTTAGGGACCCAAGA+TGG 0.464899 5_2:-44881748 Msa0771710:CDS
GCACGGTCAATTTGAGATAT+GGG 0.467018 5_2:+44879418 None:intergenic
ACGGTGGAAGGAGGTGGAAA+GGG 0.469710 5_2:-44877438 Msa0771710:CDS
TTATTTGTTGGTTGTGGGAG+AGG 0.471909 5_2:-44877334 Msa0771710:CDS
TCTTATGTGAGAGGACTTCA+AGG 0.479398 5_2:-44881668 Msa0771710:CDS
CATATTTAGGGACCCAAGAT+GGG 0.480274 5_2:-44881747 Msa0771710:CDS
CTGCCATATTGAAGTTTGGT+TGG 0.480427 5_2:+44879343 None:intergenic
AATATGGATACTTGTTTACA+AGG 0.482332 5_2:+44879133 None:intergenic
GTTGAATGAATGAAGGTGAT+TGG 0.482850 5_2:-44881839 Msa0771710:intron
GTGTTTCCGTCTCTTGACTT+TGG 0.484702 5_2:+44878969 None:intergenic
GGTGGTTATTTGTTGGTTGT+GGG 0.491601 5_2:-44877339 Msa0771710:CDS
CAAGGTGATTCCTTTGAAGG+TGG 0.492851 5_2:-44881650 Msa0771710:CDS
AGGGTATTTACTCTTGGAAG+TGG 0.494590 5_2:+44879220 None:intergenic
CTTAATATGAGACGGAGGAT+AGG 0.499315 5_2:+44877128 None:intergenic
ATCCAGAACGATAATGTGTC+TGG 0.501407 5_2:+44879086 None:intergenic
GAGCCGTGATACGATGTCTT+TGG 0.502639 5_2:+44882567 None:intergenic
AGGTACATTAGTCGGTGAAT+CGG 0.504246 5_2:+44882669 None:intergenic
CTGTTTGTGAAGCCAAAGAA+AGG 0.504938 5_2:-44877507 Msa0771710:CDS
GACGGTGGAAGGAGGTGGAA+AGG 0.507657 5_2:-44877439 Msa0771710:CDS
GGTAAGGGGATAAGATTGAA+TGG 0.507764 5_2:-44882433 Msa0771710:CDS
TTGCACGGTGTCTCTTATGT+TGG 0.508557 5_2:-44882454 Msa0771710:CDS
ATGAGAGCTGATCCATCATC+AGG 0.511303 5_2:-44877807 Msa0771710:CDS
TTGGAGATGTCACAGGAGTA+AGG 0.511401 5_2:+44882646 None:intergenic
GTAGAAACGGTAGGTTCTAC+CGG 0.511605 5_2:+44877779 None:intergenic
CGGTATACCGAGTCGAGGAA+TGG 0.513844 5_2:+44882501 None:intergenic
ACATCAGCTACAACATCCTC+TGG 0.517153 5_2:+44880509 None:intergenic
CTACCGGGATAGCCTGATGA+TGG 0.517596 5_2:+44877795 None:intergenic
TGGTTGACTGGTTGATGTGA+AGG 0.523221 5_2:+44877673 None:intergenic
TTCTTGCAGCTTCAAGAGCA+AGG 0.526483 5_2:+44879281 None:intergenic
GGTTACTTTACAAGATTTGG+CGG 0.526554 5_2:-44881138 Msa0771710:CDS
TATCGTTCTGGATGTACTGA+TGG 0.530389 5_2:-44879076 Msa0771710:CDS
AAGAATAATGACAAAATTGG+AGG 0.530513 5_2:-44878821 Msa0771710:CDS
GGTGTCTCTTATGTTGGTAA+GGG 0.533887 5_2:-44882448 Msa0771710:CDS
GCTAGAGGAGTGTACAATGC+TGG 0.534160 5_2:-44881809 Msa0771710:CDS
ATACCGAGTCGAGGAATGGC+AGG 0.534851 5_2:+44882505 None:intergenic
TGTGCTTATAACCGTGTCAA+TGG 0.535016 5_2:-44881056 Msa0771710:CDS
ATTGGAGGCATCATTTGGGC+TGG 0.536363 5_2:-44878806 Msa0771710:CDS
CAGCCGTAAGAATGATTTGA+GGG 0.537119 5_2:+44882386 None:intergenic
TCTTGGAAGTGGGAGAATTG+AGG 0.537861 5_2:+44879231 None:intergenic
TTAATATGAGACGGAGGATA+GGG 0.539045 5_2:+44877129 None:intergenic
AAGGTCTACGAATTCGGCTA+TGG 0.539382 5_2:-44877747 Msa0771710:CDS
CCTTTGGACCTGTGTAGAAA+CGG 0.540578 5_2:+44877766 None:intergenic
AATGGTAAATAGATTGTGTA+GGG 0.541798 5_2:+44879396 None:intergenic
AAGGTGATTCCTTTGAAGGT+GGG 0.542147 5_2:-44881649 Msa0771710:CDS
ATCCAGTGAAACAGTTGGTA+GGG 0.542668 5_2:-44877473 Msa0771710:CDS
GATCCATCATCAGGCTATCC+CGG 0.542828 5_2:-44877798 Msa0771710:CDS
GCATAAATCCCCTCACAGCA+TGG 0.543300 5_2:-44882758 Msa0771710:CDS
GGCTTCACAAACAGCAACAC+AGG 0.545539 5_2:+44877516 None:intergenic
CTATGATTTGGAAAATTGGA+AGG 0.547121 5_2:-44881573 Msa0771710:CDS
GGTGTCAAGGTGGTTGAAGA+AGG 0.548262 5_2:-44877360 Msa0771710:CDS
CTTCCAAGAGTAAATACCCT+TGG 0.550798 5_2:-44879217 Msa0771710:CDS
CAATGTTACAGAAATGGACA+TGG 0.553553 5_2:+44877575 None:intergenic
TTGTATGCAACTATGAAATG+AGG 0.555935 5_2:+44881103 None:intergenic
AGAGTTCATTTAGAGTTACC+TGG 0.556126 5_2:-44878941 Msa0771710:CDS
GCCCTTCCACCAGTTTCACC+AGG 0.557917 5_2:+44878779 None:intergenic
GAAGGTGGGAAATTAATTGG+AGG 0.558780 5_2:-44881635 Msa0771710:CDS
AATCCAGTGAAACAGTTGGT+AGG 0.561271 5_2:-44877474 Msa0771710:CDS
AGGGACCCAAGATGGGGAAG+AGG 0.563005 5_2:-44881740 Msa0771710:CDS
TCGGTATACCGAGTTATCAA+TGG 0.563582 5_2:-44882489 Msa0771710:CDS
TCATTCCACCATTGATAACT+CGG 0.565942 5_2:+44882481 None:intergenic
CCATACTTTGAATTTACCAA+AGG 0.567024 5_2:+44881695 None:intergenic
TAATGGTAAATAGATTGTGT+AGG 0.569087 5_2:+44879395 None:intergenic
GTGAATCGGCATGAACGAGT+TGG 0.570073 5_2:+44882683 None:intergenic
ATCCTGGTGAAACTGGTGGA+AGG 0.570539 5_2:-44878781 Msa0771710:CDS
GCTCTTGAAGCTGCAAGAAG+TGG 0.571675 5_2:-44879277 Msa0771710:CDS
CATAAATCCCCTCACAGCAT+GGG 0.572541 5_2:-44882757 Msa0771710:CDS
CAAATACTGGAAGCATGGCT+GGG 0.573487 5_2:-44877545 Msa0771710:CDS
ACTTTGGTACCGAATCAGTA+AGG 0.574437 5_2:-44882347 Msa0771710:intron
GAGAGTGTGACGGTGGAAGG+AGG 0.575492 5_2:-44877447 Msa0771710:CDS
AGTGTGACGGTGGAAGGAGG+TGG 0.578214 5_2:-44877444 Msa0771710:CDS
TACAATGCTGGACAAGCCCA+AGG 0.580349 5_2:-44881797 Msa0771710:CDS
AGAACGATAATGTGTCTGGC+TGG 0.580712 5_2:+44879090 None:intergenic
AGCAAATGAGAGTGGTGTCA+AGG 0.581128 5_2:-44877373 Msa0771710:CDS
GTATCGAATGAGTGGTTGAC+TGG 0.582453 5_2:+44877661 None:intergenic
AATTACAAATACTGGAAGCA+TGG 0.582605 5_2:-44877550 Msa0771710:CDS
GCAGCCGTAAGAATGATTTG+AGG 0.582798 5_2:+44882385 None:intergenic
CATCGTATCACGGCTCACAT+TGG 0.582953 5_2:-44882560 Msa0771710:CDS
GTAGCTGATGTACTTCGAGC+TGG 0.583158 5_2:-44880497 Msa0771710:intron
AAAATTGGCCCATGCTGTGA+GGG 0.583831 5_2:+44882749 None:intergenic
TCCTGGTGAAACTGGTGGAA+GGG 0.585464 5_2:-44878780 Msa0771710:CDS
TATGGTGTTTCTTATGTGAG+AGG 0.587329 5_2:-44881677 Msa0771710:CDS
GTAAGGTTGAGATTGCAAAA+GGG 0.590206 5_2:+44882604 None:intergenic
ACTCTGAAACAAGTTTGTAA+CGG 0.590668 5_2:+44877619 None:intergenic
GAGTAAGGAGGTACATTAGT+CGG 0.591459 5_2:+44882661 None:intergenic
CATTAGGGCCTATAACTCCA+AGG 0.594911 5_2:+44879200 None:intergenic
AAAAGACACTTAATATGAGA+CGG 0.601763 5_2:+44877120 None:intergenic
GGAAGAGGACAAGAAACAGC+TGG 0.605215 5_2:-44881725 Msa0771710:CDS
GGGTATTTACTCTTGGAAGT+GGG 0.605290 5_2:+44879221 None:intergenic
CCGTTTCTACACAGGTCCAA+AGG 0.609130 5_2:-44877766 Msa0771710:CDS
AGAACCTACCGTTTCTACAC+AGG 0.612051 5_2:-44877774 Msa0771710:CDS
GGTTATCCTGGTGAAACTGG+TGG 0.612813 5_2:-44878785 Msa0771710:CDS
ACGTGGGTTGGAGATGTCAC+AGG 0.612949 5_2:+44882639 None:intergenic
GTCAAGGTGGTTGAAGAAGG+TGG 0.614362 5_2:-44877357 Msa0771710:CDS
GTGTCTCTTATGTTGGTAAG+GGG 0.615641 5_2:-44882447 Msa0771710:CDS
TGGAAATCCAGTGAAACAGT+TGG 0.620701 5_2:-44877478 Msa0771710:CDS
GTATACCGAGTTATCAATGG+TGG 0.620903 5_2:-44882486 Msa0771710:CDS
TTAAATCAGGTATATTGCGT+CGG 0.624270 5_2:-44880582 Msa0771710:intron
GCTCCTGCCATTCCTCGACT+CGG 0.625159 5_2:-44882508 Msa0771710:CDS
TGGACCTGTGTAGAAACGGT+AGG 0.625209 5_2:+44877770 None:intergenic
TTTACCATTAGAATAAGACT+AGG 0.630221 5_2:-44879382 Msa0771710:CDS
TAAATAGATTGTGTAGGGCA+CGG 0.632594 5_2:+44879401 None:intergenic
CGATACATATATGAGAAACA+AGG 0.634724 5_2:-44880545 Msa0771710:CDS
GGTAGGGTTTGAGAGTGTGA+CGG 0.635292 5_2:-44877457 Msa0771710:CDS
AGGGTTTGAGAGTGTGACGG+TGG 0.638866 5_2:-44877454 Msa0771710:CDS
ATTGGACCAAAGTCAAGAGA+CGG 0.639353 5_2:-44878975 Msa0771710:CDS
GAGCCAAAGACATCGTATCA+CGG 0.640636 5_2:-44882570 Msa0771710:CDS
TAGAAACGGTAGGTTCTACC+GGG 0.648311 5_2:+44877780 None:intergenic
CTTAGTAGAGCAAATGAGAG+TGG 0.648348 5_2:-44877381 Msa0771710:CDS
TCAGGGATGGATCTAGAGTG+TGG 0.648701 5_2:-44879490 Msa0771710:intron
GTGATTGGAACTGAGGCTAG+AGG 0.649624 5_2:-44881824 Msa0771710:CDS
ATACAACAAGGACGATCTAG+TGG 0.653851 5_2:-44881086 Msa0771710:CDS
AATGAAGGTGATTGGAACTG+AGG 0.656984 5_2:-44881831 Msa0771710:intron
TGTATGCAACTATGAAATGA+GGG 0.659826 5_2:+44881104 None:intergenic
ATTAGGGCCTATAACTCCAA+GGG 0.662705 5_2:+44879201 None:intergenic
AGTTTGGAACTCCATTGACA+CGG 0.665349 5_2:+44881045 None:intergenic
TATGATTTGGAAAATTGGAA+GGG 0.673969 5_2:-44881572 Msa0771710:CDS
ATATTTAGGGACCCAAGATG+GGG 0.678025 5_2:-44881746 Msa0771710:CDS
GAGGGAGACTACCAATGACA+TGG 0.689428 5_2:-44877872 Msa0771710:CDS
TTTCATAGTTGCATACAACA+AGG 0.698799 5_2:-44881098 Msa0771710:CDS
TGGTGGAATGAAGCTTTGCA+CGG 0.702092 5_2:-44882469 Msa0771710:CDS
ATGGATACTTGTTTACAAGG+AGG 0.708927 5_2:+44879136 None:intergenic
GAAAATTGGCCCATGCTGTG+AGG 0.711405 5_2:+44882748 None:intergenic
AAATTGGCCCATGCTGTGAG+GGG 0.711472 5_2:+44882750 None:intergenic
TAACTCGGTATACCGAGTCG+AGG 0.711678 5_2:+44882496 None:intergenic
ACAATGCTGGACAAGCCCAA+GGG 0.711926 5_2:-44881796 Msa0771710:CDS
GAGATGTCACAGGAGTAAGG+AGG 0.715685 5_2:+44882649 None:intergenic
AGACACTTAATATGAGACGG+AGG 0.717375 5_2:+44877123 None:intergenic
AAATGAGAGTGGTGTCAAGG+TGG 0.736902 5_2:-44877370 Msa0771710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATGATAATTTATTTT+CGG - chr5_2:44882730-44882749 Msa0771710:CDS 10.0%
!! TCTTAAAAAAATCCAAATAT+GGG + chr5_2:44877775-44877794 None:intergenic 15.0%
!! ATCTTAAAAAAATCCAAATA+TGG + chr5_2:44877776-44877795 None:intergenic 15.0%
!! ATAGAATTATTATGTGTTTA+CGG - chr5_2:44879459-44879478 Msa0771710:CDS 15.0%
!!! TTCATCATAATTTTTAGTAT+AGG - chr5_2:44879824-44879843 Msa0771710:intron 15.0%
!!! TTTCTTAATTTTACTCAATT+TGG - chr5_2:44880062-44880081 Msa0771710:intron 15.0%
!!! AATAAGTGATTATGTTATTT+TGG - chr5_2:44880881-44880900 Msa0771710:intron 15.0%
!! TATACTAGAAAAAGTTATTT+GGG + chr5_2:44881931-44881950 None:intergenic 15.0%
!! ATATACTAGAAAAAGTTATT+TGG + chr5_2:44881932-44881951 None:intergenic 15.0%
!! TATTTATATTGAGCAATCAT+AGG + chr5_2:44877079-44877098 None:intergenic 20.0%
!! ACATAATTCAGTGTAATTAT+AGG + chr5_2:44877657-44877676 None:intergenic 20.0%
!! ATTACAATACAAACAAAACT+CGG + chr5_2:44878016-44878035 None:intergenic 20.0%
!! ACCAAACATAAACATATTTA+GGG - chr5_2:44878127-44878146 Msa0771710:intron 20.0%
!! ATGGATTTGGATTATTAAAA+TGG + chr5_2:44878716-44878735 None:intergenic 20.0%
!!! TTACAATCTTTTAACCAATA+CGG - chr5_2:44878871-44878890 Msa0771710:CDS 20.0%
!! GTTGTTATAAATTACAAAAG+TGG - chr5_2:44878973-44878992 Msa0771710:CDS 20.0%
!!! TTGATTAGTATGAATGATTT+TGG - chr5_2:44879278-44879297 Msa0771710:CDS 20.0%
!!! AGTAAGATAACGATATTTTA+AGG + chr5_2:44879569-44879588 None:intergenic 20.0%
!!! TTTCTCATTAGTATTTTTGT+CGG - chr5_2:44879616-44879635 Msa0771710:intron 20.0%
!! AAACAAAATACAAAAGAAGA+AGG + chr5_2:44879981-44880000 None:intergenic 20.0%
!! TTTGACATAAACTAAAACTA+AGG + chr5_2:44880127-44880146 None:intergenic 20.0%
!!! AAGAACTATTGATGATTTAT+TGG + chr5_2:44880712-44880731 None:intergenic 20.0%
!! AAACAAGTATCCATATTAAA+AGG - chr5_2:44880759-44880778 Msa0771710:intron 20.0%
!!! TGATTATGTTATTTTGGTTA+TGG - chr5_2:44880887-44880906 Msa0771710:intron 20.0%
!!! GATTATGTTATTTTGGTTAT+GGG - chr5_2:44880888-44880907 Msa0771710:intron 20.0%
!! TATGTATGTTTATTTGTTCA+TGG + chr5_2:44881189-44881208 None:intergenic 20.0%
!! ACAAATAAACATACATAATG+TGG - chr5_2:44881192-44881211 Msa0771710:intron 20.0%
!! TACATAATGTGGTAAAAAAA+TGG - chr5_2:44881203-44881222 Msa0771710:intron 20.0%
!! TGAAGTTTATACATGTTTAA+AGG + chr5_2:44881428-44881447 None:intergenic 20.0%
!!! TTATTTTATATTGGGAAACA+AGG - chr5_2:44881517-44881536 Msa0771710:intron 20.0%
!!! TATTTTATATTGGGAAACAA+GGG - chr5_2:44881518-44881537 Msa0771710:intron 20.0%
!!! ATAATCAATGTTTTCAATTG+TGG + chr5_2:44881861-44881880 None:intergenic 20.0%
!! ATACTAGAAAAAGTTATTTG+GGG + chr5_2:44881930-44881949 None:intergenic 20.0%
!!! GTATTTTGATGAAATCTTTT+GGG + chr5_2:44882042-44882061 None:intergenic 20.0%
!! ATCAAGTAAAGAATAACTAA+TGG - chr5_2:44882638-44882657 Msa0771710:CDS 20.0%
!! ATGCATATTAATTTACTCAT+TGG + chr5_2:44882817-44882836 None:intergenic 20.0%
! AAAAATGAAAGTAATGGTGA+TGG + chr5_2:44877163-44877182 None:intergenic 25.0%
! GAAGAGAAAAATGAAAGTAA+TGG + chr5_2:44877169-44877188 None:intergenic 25.0%
!! AACAACATTTTGTCAAACAT+GGG + chr5_2:44877581-44877600 None:intergenic 25.0%
! CAAATCATTTAACCCATATT+TGG - chr5_2:44877760-44877779 Msa0771710:CDS 25.0%
! TTTCAAATGAATTCTACTAC+TGG - chr5_2:44877937-44877956 Msa0771710:intron 25.0%
! TTCAAATGAATTCTACTACT+GGG - chr5_2:44877938-44877957 Msa0771710:intron 25.0%
! ATTATGTGTTGAATGAATGA+AGG - chr5_2:44878040-44878059 Msa0771710:intron 25.0%
! CACCAAACATAAACATATTT+AGG - chr5_2:44878126-44878145 Msa0771710:intron 25.0%
! TCCCTAAATATGTTTATGTT+TGG + chr5_2:44878131-44878150 None:intergenic 25.0%
!! TATGATTTGGAAAATTGGAA+GGG - chr5_2:44878314-44878333 Msa0771710:intron 25.0%
! AGAGAAAAGAAAACTTACTT+TGG + chr5_2:44878363-44878382 None:intergenic 25.0%
!! AGTAAGTTTTCTTTTCTCTA+TGG - chr5_2:44878364-44878383 Msa0771710:intron 25.0%
! GTTTAGCATTCTTAAAATCA+TGG - chr5_2:44878437-44878456 Msa0771710:intron 25.0%
! ATAAGAATCATTAGCATAAC+AGG + chr5_2:44878664-44878683 None:intergenic 25.0%
!! CTGAATTATTAGAATGGATT+TGG + chr5_2:44878729-44878748 None:intergenic 25.0%
! CAAATCCATTCTAATAATTC+AGG - chr5_2:44878727-44878746 Msa0771710:intron 25.0%
! AGTAACCTGAATTATTAGAA+TGG + chr5_2:44878735-44878754 None:intergenic 25.0%
! AGGAAAAAATGGAATTTCAA+TGG - chr5_2:44878896-44878915 Msa0771710:CDS 25.0%
! GGAAAAAATGGAATTTCAAT+GGG - chr5_2:44878897-44878916 Msa0771710:CDS 25.0%
! TGGAAAACATTGTTTCATAA+AGG + chr5_2:44879115-44879134 None:intergenic 25.0%
!! AATGTTTTCCACTCTATTAA+AGG - chr5_2:44879124-44879143 Msa0771710:CDS 25.0%
! TCTGATTATGACATAAACAA+AGG + chr5_2:44879430-44879449 None:intergenic 25.0%
! TCGTTATCTTACTTTATCAA+TGG - chr5_2:44879576-44879595 Msa0771710:intron 25.0%
! TTTGCTTATATTAAGTCACA+TGG - chr5_2:44879648-44879667 Msa0771710:intron 25.0%
! TTATATTAAGTCACATGGTT+TGG - chr5_2:44879653-44879672 Msa0771710:intron 25.0%
! CAAAGATGTAACATAATTAG+AGG - chr5_2:44879854-44879873 Msa0771710:intron 25.0%
! AAGTGTGATTATAAAGCTTA+AGG + chr5_2:44880098-44880117 None:intergenic 25.0%
! CTAAACATAGACTAATTCTA+AGG + chr5_2:44880204-44880223 None:intergenic 25.0%
!! CTTAGAATTAGTCTATGTTT+AGG - chr5_2:44880202-44880221 Msa0771710:intron 25.0%
!! TATAACTTGTGCCAAAATAA+CGG + chr5_2:44880245-44880264 None:intergenic 25.0%
!! CTTGTGTATGTTTGAAATTA+TGG + chr5_2:44880320-44880339 None:intergenic 25.0%
! AATGGTAAATAGATTGTGTA+GGG + chr5_2:44880493-44880512 None:intergenic 25.0%
! TAATGGTAAATAGATTGTGT+AGG + chr5_2:44880494-44880513 None:intergenic 25.0%
! TTTACCATTAGAATAAGACT+AGG - chr5_2:44880504-44880523 Msa0771710:CDS 25.0%
!! TTGATGATTTATTGGCATTA+GGG + chr5_2:44880704-44880723 None:intergenic 25.0%
!! ATTGATGATTTATTGGCATT+AGG + chr5_2:44880705-44880724 None:intergenic 25.0%
!! GTTCTTTTAGCAAACTATTT+TGG - chr5_2:44880726-44880745 Msa0771710:intron 25.0%
! AATATGGATACTTGTTTACA+AGG + chr5_2:44880756-44880775 None:intergenic 25.0%
!! AGTGTAAAAGCCTTTTAATA+TGG + chr5_2:44880772-44880791 None:intergenic 25.0%
! CACAAAATTACCAAAATAAC+AGG + chr5_2:44881017-44881036 None:intergenic 25.0%
!!! GTTATTTTGGTAATTTTGTG+TGG - chr5_2:44881017-44881036 Msa0771710:CDS 25.0%
! GCTAAGAATAATGACAAAAT+TGG - chr5_2:44881062-44881081 Msa0771710:CDS 25.0%
! AAGAATAATGACAAAATTGG+AGG - chr5_2:44881065-44881084 Msa0771710:CDS 25.0%
!! ATGTGGTAAAAAAATGGATT+TGG - chr5_2:44881209-44881228 Msa0771710:intron 25.0%
! TTTAGTTGTGCTTACTAAAT+GGG + chr5_2:44881578-44881597 None:intergenic 25.0%
! ATTTAGTTGTGCTTACTAAA+TGG + chr5_2:44881579-44881598 None:intergenic 25.0%
!! TTAACTATTTTCTTGGAATC+TGG + chr5_2:44881679-44881698 None:intergenic 25.0%
! AGATTCCAAGAAAATAGTTA+AGG - chr5_2:44881678-44881697 Msa0771710:CDS 25.0%
! TAGAAAATAGTGTTTGTTTG+CGG + chr5_2:44881776-44881795 None:intergenic 25.0%
! ATATCAAATTGCTACATACA+TGG + chr5_2:44881801-44881820 None:intergenic 25.0%
! GGGATATATACAATGTATTT+CGG + chr5_2:44881909-44881928 None:intergenic 25.0%
! TACTAGAAAAAGTTATTTGG+GGG + chr5_2:44881929-44881948 None:intergenic 25.0%
!! AGTTGAGAAATAGTAGTTTT+AGG + chr5_2:44881958-44881977 None:intergenic 25.0%
!! ATATTTTATCATTGCAATGC+AGG - chr5_2:44881992-44882011 Msa0771710:intron 25.0%
!!! GGTATTTTGATGAAATCTTT+TGG + chr5_2:44882043-44882062 None:intergenic 25.0%
! ATATGACTCTACTTATGTAA+TGG - chr5_2:44882683-44882702 Msa0771710:CDS 25.0%
! AAAAGACACTTAATATGAGA+CGG + chr5_2:44882769-44882788 None:intergenic 25.0%
!! CTCATATTAAGTGTCTTTTA+AGG - chr5_2:44882770-44882789 Msa0771710:CDS 25.0%
!! AAGTAATGGTGATGGAAAAT+TGG + chr5_2:44877155-44877174 None:intergenic 30.0%
TTTCCCTCAAATCATTCTTA+CGG - chr5_2:44877497-44877516 Msa0771710:CDS 30.0%
! CAACAACATTTTGTCAAACA+TGG + chr5_2:44877582-44877601 None:intergenic 30.0%
CATGTTTGACAAAATGTTGT+TGG - chr5_2:44877580-44877599 Msa0771710:CDS 30.0%
GTTGAAACACTTCTTGAATT+AGG - chr5_2:44877602-44877621 Msa0771710:CDS 30.0%
TTCTCAAATTATTAGCGTGT+CGG - chr5_2:44877681-44877700 Msa0771710:CDS 30.0%
GATTTGAATGAAATGAAGCA+CGG + chr5_2:44877746-44877765 None:intergenic 30.0%
! TTTTAGTACTTACCCAATCT+CGG - chr5_2:44877833-44877852 Msa0771710:CDS 30.0%
CCATACTTTGAATTTACCAA+AGG + chr5_2:44878194-44878213 None:intergenic 30.0%
CCTTTGGTAAATTCAAAGTA+TGG - chr5_2:44878191-44878210 Msa0771710:intron 30.0%
AATTAATTTCCCACCTTCAA+AGG + chr5_2:44878249-44878268 None:intergenic 30.0%
TTTGAAGGTGGGAAATTAAT+TGG - chr5_2:44878248-44878267 Msa0771710:intron 30.0%
! CTTCCAATTTTCCAAATCAT+AGG + chr5_2:44878315-44878334 None:intergenic 30.0%
! CTATGATTTGGAAAATTGGA+AGG - chr5_2:44878313-44878332 Msa0771710:intron 30.0%
TAGAATTAATCATCCATCCA+AGG + chr5_2:44878398-44878417 None:intergenic 30.0%
TGGATGGATGATTAATTCTA+TGG - chr5_2:44878398-44878417 Msa0771710:intron 30.0%
! TCAGGTTACTTTACAAGATT+TGG - chr5_2:44878745-44878764 Msa0771710:CDS 30.0%
TGTATGCAACTATGAAATGA+GGG + chr5_2:44878785-44878804 None:intergenic 30.0%
TTGTATGCAACTATGAAATG+AGG + chr5_2:44878786-44878805 None:intergenic 30.0%
TTTCATAGTTGCATACAACA+AGG - chr5_2:44878788-44878807 Msa0771710:CDS 30.0%
ACGCAATATACCTGATTTAA+CGG + chr5_2:44879304-44879323 None:intergenic 30.0%
TTAAATCAGGTATATTGCGT+CGG - chr5_2:44879304-44879323 Msa0771710:CDS 30.0%
CGATACATATATGAGAAACA+AGG - chr5_2:44879341-44879360 Msa0771710:CDS 30.0%
TACTTTATCAATGGTCTCAA+TGG - chr5_2:44879585-44879604 Msa0771710:intron 30.0%
!!! TATCACCAACTTTTTTCCAA+TGG + chr5_2:44879772-44879791 None:intergenic 30.0%
!!! TCACTTAGTTGTTTTAGTTC+TGG - chr5_2:44879935-44879954 Msa0771710:intron 30.0%
TTATAGAACTAGAGACAAAG+AGG + chr5_2:44880150-44880169 None:intergenic 30.0%
! ATGTTGTACTACCGTTATTT+TGG - chr5_2:44880231-44880250 Msa0771710:intron 30.0%
!! ACTATAATTTTGATGAACCG+TGG - chr5_2:44880344-44880363 Msa0771710:intron 30.0%
! TTGCGTGATCAAAAATTTTC+AGG - chr5_2:44880378-44880397 Msa0771710:intron 30.0%
! TGCGTGATCAAAAATTTTCA+GGG - chr5_2:44880379-44880398 Msa0771710:intron 30.0%
!! TGATCAAAAATTTTCAGGGA+TGG - chr5_2:44880383-44880402 Msa0771710:intron 30.0%
!! CAAACCTAGTCTTATTCTAA+TGG + chr5_2:44880511-44880530 None:intergenic 30.0%
! ATAAGACTAGGTTTGTTTGA+TGG - chr5_2:44880516-44880535 Msa0771710:CDS 30.0%
! TAAGACTAGGTTTGTTTGAT+GGG - chr5_2:44880517-44880536 Msa0771710:CDS 30.0%
AATCCAACCAAACTTCAATA+TGG - chr5_2:44880540-44880559 Msa0771710:CDS 30.0%
AATTCTGCCATATTGAAGTT+TGG + chr5_2:44880550-44880569 None:intergenic 30.0%
AAACTTCAATATGGCAGAAT+TGG - chr5_2:44880549-44880568 Msa0771710:CDS 30.0%
!! TCTTTAGAGCATACTTGATT+TGG + chr5_2:44880576-44880595 None:intergenic 30.0%
!!! TGTTATTTTGGTTATGGGAT+TGG - chr5_2:44880893-44880912 Msa0771710:intron 30.0%
!! TTCTAAGAAGCCTGTTATTT+TGG - chr5_2:44881004-44881023 Msa0771710:CDS 30.0%
!! ATTTTGGTAATTTTGTGTGG+TGG - chr5_2:44881020-44881039 Msa0771710:CDS 30.0%
CACAACTAAATCTCAATTAC+TGG - chr5_2:44881588-44881607 Msa0771710:CDS 30.0%
TAAATCTCAATTACTGGATG+CGG - chr5_2:44881594-44881613 Msa0771710:CDS 30.0%
ATTTGGTTGAATTGACTAGA+TGG - chr5_2:44881642-44881661 Msa0771710:CDS 30.0%
AGGAATAATTTGAGTAGCTT+AGG + chr5_2:44882165-44882184 None:intergenic 30.0%
!! ACTCTGAAACAAGTTTGTAA+CGG + chr5_2:44882270-44882289 None:intergenic 30.0%
! TACAAACTTGTTTCAGAGTT+AGG - chr5_2:44882271-44882290 Msa0771710:intron 30.0%
ATGTCCATTTCTGTAACATT+GGG - chr5_2:44882313-44882332 Msa0771710:intron 30.0%
AATTCCCAATGTTACAGAAA+TGG + chr5_2:44882320-44882339 None:intergenic 30.0%
ACATTGGGAATTACAAATAC+TGG - chr5_2:44882328-44882347 Msa0771710:intron 30.0%
AATTACAAATACTGGAAGCA+TGG - chr5_2:44882336-44882355 Msa0771710:intron 30.0%
TTTCCATTTCTACCTTTCTT+TGG + chr5_2:44882394-44882413 None:intergenic 30.0%
! TATGTAATGGAAAGCTTGAT+TGG - chr5_2:44882696-44882715 Msa0771710:CDS 30.0%
! AAAGAATTTTGTACGTGGGT+TGG + chr5_2:44877262-44877281 None:intergenic 35.0%
! AGGGAAAGAATTTTGTACGT+GGG + chr5_2:44877266-44877285 None:intergenic 35.0%
! AAGGGAAAGAATTTTGTACG+TGG + chr5_2:44877267-44877286 None:intergenic 35.0%
GTAAGGTTGAGATTGCAAAA+GGG + chr5_2:44877285-44877304 None:intergenic 35.0%
TGTAAGGTTGAGATTGCAAA+AGG + chr5_2:44877286-44877305 None:intergenic 35.0%
! TCATTCCACCATTGATAACT+CGG + chr5_2:44877408-44877427 None:intergenic 35.0%
! CTTCTTTTGATCCCAAACTT+TGG - chr5_2:44877523-44877542 Msa0771710:CDS 35.0%
! AGTTACTGACCTTACTGATT+CGG + chr5_2:44877551-44877570 None:intergenic 35.0%
TTCAGTGTAATTATAGGCGT+CGG + chr5_2:44877651-44877670 None:intergenic 35.0%
TCTCAAATTATTAGCGTGTC+GGG - chr5_2:44877682-44877701 Msa0771710:CDS 35.0%
AATGAAATGAAGCACGGATA+CGG + chr5_2:44877740-44877759 None:intergenic 35.0%
TTTAGTACTTACCCAATCTC+GGG - chr5_2:44877834-44877853 Msa0771710:CDS 35.0%
! CTACACTTCTAGTATTGAGT+GGG - chr5_2:44877897-44877916 Msa0771710:intron 35.0%
AAATGAATTCTACTACTGGG+CGG - chr5_2:44877941-44877960 Msa0771710:intron 35.0%
!! GATTAGTCTCCTGAAGTATT+CGG - chr5_2:44877967-44877986 Msa0771710:intron 35.0%
GTTGAATGAATGAAGGTGAT+TGG - chr5_2:44878047-44878066 Msa0771710:intron 35.0%
TATGGTGTTTCTTATGTGAG+AGG - chr5_2:44878209-44878228 Msa0771710:intron 35.0%
ACACTTTACTGCCTATGATT+TGG - chr5_2:44878301-44878320 Msa0771710:intron 35.0%
! CTGCCTATGATTTGGAAAAT+TGG - chr5_2:44878309-44878328 Msa0771710:intron 35.0%
TCTCTATGGTATATAGTCCT+TGG - chr5_2:44878378-44878397 Msa0771710:intron 35.0%
TATGGTATATAGTCCTTGGA+TGG - chr5_2:44878382-44878401 Msa0771710:intron 35.0%
CATTCTTAAAATCATGGTCG+AGG - chr5_2:44878443-44878462 Msa0771710:intron 35.0%
! TTATGTCGTTGATGAATCCT+TGG - chr5_2:44878562-44878581 Msa0771710:intron 35.0%
AAGTCATGATTCGATTTCCA+AGG + chr5_2:44878582-44878601 None:intergenic 35.0%
! GGTTACTTTACAAGATTTGG+CGG - chr5_2:44878748-44878767 Msa0771710:CDS 35.0%
AGATTGTAATCTGCACAGTT+TGG + chr5_2:44878860-44878879 None:intergenic 35.0%
! ATCTTTTAACCAATACGGCA+AGG - chr5_2:44878876-44878895 Msa0771710:CDS 35.0%
AACTGTTTCACCAACTAAGT+AGG + chr5_2:44879161-44879180 None:intergenic 35.0%
!! ATGATTTTGGCCGTTAAATC+AGG - chr5_2:44879291-44879310 Msa0771710:CDS 35.0%
TTATCAATGGTCTCAATGGA+AGG - chr5_2:44879589-44879608 Msa0771710:intron 35.0%
! ATGGCTTGCCTCATATATAT+GGG + chr5_2:44879704-44879723 None:intergenic 35.0%
! AATGGCTTGCCTCATATATA+TGG + chr5_2:44879705-44879724 None:intergenic 35.0%
! TTTTCCAATGGAGACTATGA+TGG + chr5_2:44879760-44879779 None:intergenic 35.0%
AGTCTCCATTGGAAAAAAGT+TGG - chr5_2:44879764-44879783 Msa0771710:intron 35.0%
TAAATAGATTGTGTAGGGCA+CGG + chr5_2:44880488-44880507 None:intergenic 35.0%
GTAAATACCCTTGGAGTTAT+AGG - chr5_2:44880678-44880697 Msa0771710:intron 35.0%
ATGGATACTTGTTTACAAGG+AGG + chr5_2:44880753-44880772 None:intergenic 35.0%
! TTTTAGCAACTTCAACTGCT+CGG + chr5_2:44880863-44880882 None:intergenic 35.0%
! AGAGTTCATTTAGAGTTACC+TGG - chr5_2:44880945-44880964 Msa0771710:intron 35.0%
! ATAAGTTTCTGTTGCTTACC+AGG + chr5_2:44880966-44880985 None:intergenic 35.0%
!! ACAAAATTGGAGGCATCATT+TGG - chr5_2:44881075-44881094 Msa0771710:CDS 35.0%
!! CAAAATTGGAGGCATCATTT+GGG - chr5_2:44881076-44881095 Msa0771710:CDS 35.0%
AGACAGAAGAAAACTAACCA+GGG + chr5_2:44881163-44881182 None:intergenic 35.0%
AAGACAGAAGAAAACTAACC+AGG + chr5_2:44881164-44881183 None:intergenic 35.0%
ACCATTCAATCAAGATTGAG+CGG + chr5_2:44881350-44881369 None:intergenic 35.0%
!! AAATCTCTATCGTTGGTTCA+AGG + chr5_2:44881626-44881645 None:intergenic 35.0%
TTGAACCAACGATAGAGATT+TGG - chr5_2:44881625-44881644 Msa0771710:CDS 35.0%
TTCAACCAAATCTCTATCGT+TGG + chr5_2:44881633-44881652 None:intergenic 35.0%
! TGCGACCTTAACTATTTTCT+TGG + chr5_2:44881686-44881705 None:intergenic 35.0%
! TTTTATCATTGCAATGCAGG+AGG - chr5_2:44881995-44882014 Msa0771710:intron 35.0%
TTTATCATTGCAATGCAGGA+GGG - chr5_2:44881996-44882015 Msa0771710:intron 35.0%
TTTGACGGAAATGAAGTTGT+AGG + chr5_2:44882185-44882204 None:intergenic 35.0%
!!! GTGAAGGTTGTTGTTTTTGA+CGG + chr5_2:44882200-44882219 None:intergenic 35.0%
CAATGTTACAGAAATGGACA+TGG + chr5_2:44882314-44882333 None:intergenic 35.0%
CATGTCCATTTCTGTAACAT+TGG - chr5_2:44882312-44882331 Msa0771710:intron 35.0%
AAGCCAAAGAAAGGTAGAAA+TGG - chr5_2:44882388-44882407 Msa0771710:CDS 35.0%
TGAAGAAGGTGGTTATTTGT+TGG - chr5_2:44882540-44882559 Msa0771710:CDS 35.0%
TTAATATGAGACGGAGGATA+GGG + chr5_2:44882760-44882779 None:intergenic 35.0%
AGGTACATTAGTCGGTGAAT+CGG + chr5_2:44877220-44877239 None:intergenic 40.0%
! GAGTAAGGAGGTACATTAGT+CGG + chr5_2:44877228-44877247 None:intergenic 40.0%
TGGCTCTTTGAGTGATTGTA+AGG + chr5_2:44877302-44877321 None:intergenic 40.0%
TCGGTATACCGAGTTATCAA+TGG - chr5_2:44877397-44877416 Msa0771710:CDS 40.0%
GTATACCGAGTTATCAATGG+TGG - chr5_2:44877400-44877419 Msa0771710:CDS 40.0%
! GGTGTCTCTTATGTTGGTAA+GGG - chr5_2:44877438-44877457 Msa0771710:CDS 40.0%
! GTGTCTCTTATGTTGGTAAG+GGG - chr5_2:44877439-44877458 Msa0771710:CDS 40.0%
GGTAAGGGGATAAGATTGAA+TGG - chr5_2:44877453-44877472 Msa0771710:CDS 40.0%
CAGCCGTAAGAATGATTTGA+GGG + chr5_2:44877503-44877522 None:intergenic 40.0%
!! CTGATTCGGTACCAAAGTTT+GGG + chr5_2:44877537-44877556 None:intergenic 40.0%
!! ACTGATTCGGTACCAAAGTT+TGG + chr5_2:44877538-44877557 None:intergenic 40.0%
! ACTTTGGTACCGAATCAGTA+AGG - chr5_2:44877539-44877558 Msa0771710:CDS 40.0%
CTCAAATTATTAGCGTGTCG+GGG - chr5_2:44877683-44877702 Msa0771710:CDS 40.0%
TTAGTACTTACCCAATCTCG+GGG - chr5_2:44877835-44877854 Msa0771710:CDS 40.0%
GGTCTCAAACCATATACCAT+CGG + chr5_2:44877865-44877884 None:intergenic 40.0%
! TGGTATATGGTTTGAGACCT+AGG - chr5_2:44877866-44877885 Msa0771710:CDS 40.0%
! CCACTCAATACTAGAAGTGT+AGG + chr5_2:44877899-44877918 None:intergenic 40.0%
! CCTACACTTCTAGTATTGAG+TGG - chr5_2:44877896-44877915 Msa0771710:intron 40.0%
! GTATTGAGTGGGTTCATACA+TGG - chr5_2:44877908-44877927 Msa0771710:intron 40.0%
AACAAAACTCGGTATCTGCT+TGG + chr5_2:44878005-44878024 None:intergenic 40.0%
AATGAAGGTGATTGGAACTG+AGG - chr5_2:44878055-44878074 Msa0771710:intron 40.0%
ACATATTTAGGGACCCAAGA+TGG - chr5_2:44878138-44878157 Msa0771710:intron 40.0%
CATATTTAGGGACCCAAGAT+GGG - chr5_2:44878139-44878158 Msa0771710:intron 40.0%
ATATTTAGGGACCCAAGATG+GGG - chr5_2:44878140-44878159 Msa0771710:intron 40.0%
TCTTATGTGAGAGGACTTCA+AGG - chr5_2:44878218-44878237 Msa0771710:intron 40.0%
CTTCAAGGTGATTCCTTTGA+AGG - chr5_2:44878233-44878252 Msa0771710:intron 40.0%
! AAGGTGATTCCTTTGAAGGT+GGG - chr5_2:44878237-44878256 Msa0771710:intron 40.0%
GAAGGTGGGAAATTAATTGG+AGG - chr5_2:44878251-44878270 Msa0771710:intron 40.0%
ATACAACAAGGACGATCTAG+TGG - chr5_2:44878800-44878819 Msa0771710:CDS 40.0%
TGTGCTTATAACCGTGTCAA+TGG - chr5_2:44878830-44878849 Msa0771710:CDS 40.0%
! AGTTTGGAACTCCATTGACA+CGG + chr5_2:44878844-44878863 None:intergenic 40.0%
!!! CCATTTTTTCCTTGCCGTAT+TGG + chr5_2:44878888-44878907 None:intergenic 40.0%
CCAATACGGCAAGGAAAAAA+TGG - chr5_2:44878885-44878904 Msa0771710:CDS 40.0%
TGCTCACACCTTTAATAGAG+TGG + chr5_2:44879135-44879154 None:intergenic 40.0%
! CTCTATTAAAGGTGTGAGCA+TGG - chr5_2:44879135-44879154 Msa0771710:CDS 40.0%
AGGTTATGCAAAAACACCAG+AGG - chr5_2:44879361-44879380 Msa0771710:CDS 40.0%
GTGGGGTCTAATGAAAATGT+AGG + chr5_2:44879679-44879698 None:intergenic 40.0%
! TGGCTTGCCTCATATATATG+GGG + chr5_2:44879703-44879722 None:intergenic 40.0%
! CCATCATTGATGGCTTAGAA+TGG + chr5_2:44879723-44879742 None:intergenic 40.0%
CCATTCTAAGCCATCAATGA+TGG - chr5_2:44879720-44879739 Msa0771710:intron 40.0%
TAAGCCATCAATGATGGTCA+TGG - chr5_2:44879726-44879745 Msa0771710:intron 40.0%
!! TGGAGACTATGATGGACATT+GGG + chr5_2:44879752-44879771 None:intergenic 40.0%
!! ATGGAGACTATGATGGACAT+TGG + chr5_2:44879753-44879772 None:intergenic 40.0%
ATGTCCATCATAGTCTCCAT+TGG - chr5_2:44879753-44879772 Msa0771710:intron 40.0%
ACGCAACATGTAAATTGCCA+CGG + chr5_2:44880364-44880383 None:intergenic 40.0%
! GCACGGTCAATTTGAGATAT+GGG + chr5_2:44880471-44880490 None:intergenic 40.0%
CTGCCATATTGAAGTTTGGT+TGG + chr5_2:44880546-44880565 None:intergenic 40.0%
GGGTATTTACTCTTGGAAGT+GGG + chr5_2:44880668-44880687 None:intergenic 40.0%
! AGGGTATTTACTCTTGGAAG+TGG + chr5_2:44880669-44880688 None:intergenic 40.0%
CTTCCAAGAGTAAATACCCT+TGG - chr5_2:44880669-44880688 Msa0771710:intron 40.0%
!! ACTCCAAGGGTATTTACTCT+TGG + chr5_2:44880675-44880694 None:intergenic 40.0%
ATTAGGGCCTATAACTCCAA+GGG + chr5_2:44880688-44880707 None:intergenic 40.0%
ATCCAGAACGATAATGTGTC+TGG + chr5_2:44880803-44880822 None:intergenic 40.0%
! TATCGTTCTGGATGTACTGA+TGG - chr5_2:44880810-44880829 Msa0771710:intron 40.0%
ATTGGACCAAAGTCAAGAGA+CGG - chr5_2:44880911-44880930 Msa0771710:intron 40.0%
TCAGGTTACATCTGGAGATT+GGG - chr5_2:44881258-44881277 Msa0771710:intron 40.0%
ACCGCTCAATCTTGATTGAA+TGG - chr5_2:44881346-44881365 Msa0771710:intron 40.0%
AGACTTTGTAGCTGCAATTG+TGG + chr5_2:44881710-44881729 None:intergenic 40.0%
!! TCTTTTGGGTACCATGTCAT+TGG + chr5_2:44882028-44882047 None:intergenic 40.0%
!!! GTTTTCGAGTATCGAATGAG+TGG + chr5_2:44882236-44882255 None:intergenic 40.0%
CTGTTTGTGAAGCCAAAGAA+AGG - chr5_2:44882379-44882398 Msa0771710:CDS 40.0%
TGGAAATCCAGTGAAACAGT+TGG - chr5_2:44882408-44882427 Msa0771710:CDS 40.0%
AATCCAGTGAAACAGTTGGT+AGG - chr5_2:44882412-44882431 Msa0771710:CDS 40.0%
! ATCCAGTGAAACAGTTGGTA+GGG - chr5_2:44882413-44882432 Msa0771710:CDS 40.0%
CTTAGTAGAGCAAATGAGAG+TGG - chr5_2:44882505-44882524 Msa0771710:CDS 40.0%
! AGGTGGTTATTTGTTGGTTG+TGG - chr5_2:44882546-44882565 Msa0771710:CDS 40.0%
! GGTGGTTATTTGTTGGTTGT+GGG - chr5_2:44882547-44882566 Msa0771710:CDS 40.0%
! TTATTTGTTGGTTGTGGGAG+AGG - chr5_2:44882552-44882571 Msa0771710:CDS 40.0%
CTTAATATGAGACGGAGGAT+AGG + chr5_2:44882761-44882780 None:intergenic 40.0%
AGACACTTAATATGAGACGG+AGG + chr5_2:44882766-44882785 None:intergenic 40.0%
CATAAATCCCCTCACAGCAT+GGG - chr5_2:44877129-44877148 Msa0771710:three_prime_UTR 45.0%
AAAATTGGCCCATGCTGTGA+GGG + chr5_2:44877140-44877159 None:intergenic 45.0%
TTGGAGATGTCACAGGAGTA+AGG + chr5_2:44877243-44877262 None:intergenic 45.0%
GAGCCAAAGACATCGTATCA+CGG - chr5_2:44877316-44877335 Msa0771710:CDS 45.0%
TGGTGGAATGAAGCTTTGCA+CGG - chr5_2:44877417-44877436 Msa0771710:CDS 45.0%
TTGCACGGTGTCTCTTATGT+TGG - chr5_2:44877432-44877451 Msa0771710:CDS 45.0%
CGGTGTCTCTTATGTTGGTA+AGG - chr5_2:44877437-44877456 Msa0771710:CDS 45.0%
GCAGCCGTAAGAATGATTTG+AGG + chr5_2:44877504-44877523 None:intergenic 45.0%
!! GTAATTATAGGCGTCGGTGT+CGG + chr5_2:44877645-44877664 None:intergenic 45.0%
AACAGCTGGTGAAGATCCTT+TGG - chr5_2:44878175-44878194 Msa0771710:intron 45.0%
! CAAGGTGATTCCTTTGAAGG+TGG - chr5_2:44878236-44878255 Msa0771710:intron 45.0%
CTAACACAACCCCACAAAAC+CGG - chr5_2:44878467-44878486 Msa0771710:intron 45.0%
ATTCGAAGACATGCACAAGC+CGG + chr5_2:44878489-44878508 None:intergenic 45.0%
ACATCAGCTACAACATCCTC+TGG + chr5_2:44879380-44879399 None:intergenic 45.0%
CCTCATATATATGGGGAGTG+GGG + chr5_2:44879696-44879715 None:intergenic 45.0%
GCCTCATATATATGGGGAGT+GGG + chr5_2:44879697-44879716 None:intergenic 45.0%
TGCCTCATATATATGGGGAG+TGG + chr5_2:44879698-44879717 None:intergenic 45.0%
! GGCACGGTCAATTTGAGATA+TGG + chr5_2:44880472-44880491 None:intergenic 45.0%
TTCTTGCAGCTTCAAGAGCA+AGG + chr5_2:44880608-44880627 None:intergenic 45.0%
TCTTGGAAGTGGGAGAATTG+AGG + chr5_2:44880658-44880677 None:intergenic 45.0%
CATTAGGGCCTATAACTCCA+AGG + chr5_2:44880689-44880708 None:intergenic 45.0%
AGAACGATAATGTGTCTGGC+TGG + chr5_2:44880799-44880818 None:intergenic 45.0%
AGCCAGACACATTATCGTTC+TGG - chr5_2:44880798-44880817 Msa0771710:intron 45.0%
GTGTTTCCGTCTCTTGACTT+TGG + chr5_2:44880920-44880939 None:intergenic 45.0%
!! ATCATTTGGGCTGGTTATCC+TGG - chr5_2:44881089-44881108 Msa0771710:CDS 45.0%
! GTGTTTGGTGACTATAACCC+TGG - chr5_2:44881143-44881162 Msa0771710:intron 45.0%
GTCAGGTTACATCTGGAGAT+TGG - chr5_2:44881257-44881276 Msa0771710:intron 45.0%
TGCACGCAGTTATGTAGTTG+TGG - chr5_2:44881385-44881404 Msa0771710:intron 45.0%
TGCTTACTAAATGGGTGCAC+AGG + chr5_2:44881570-44881589 None:intergenic 45.0%
ATGAGAGCTGATCCATCATC+AGG - chr5_2:44882079-44882098 Msa0771710:intron 45.0%
TAGAAACGGTAGGTTCTACC+GGG + chr5_2:44882109-44882128 None:intergenic 45.0%
GTAGAAACGGTAGGTTCTAC+CGG + chr5_2:44882110-44882129 None:intergenic 45.0%
AGAACCTACCGTTTCTACAC+AGG - chr5_2:44882112-44882131 Msa0771710:intron 45.0%
CCTTTGGACCTGTGTAGAAA+CGG + chr5_2:44882123-44882142 None:intergenic 45.0%
GGTCCAAAGGTCTACGAATT+CGG - chr5_2:44882133-44882152 Msa0771710:intron 45.0%
TAGCCGAATTCGTAGACCTT+TGG + chr5_2:44882139-44882158 None:intergenic 45.0%
AAGGTCTACGAATTCGGCTA+TGG - chr5_2:44882139-44882158 Msa0771710:intron 45.0%
! TGGTTGACTGGTTGATGTGA+AGG + chr5_2:44882216-44882235 None:intergenic 45.0%
GTATCGAATGAGTGGTTGAC+TGG + chr5_2:44882228-44882247 None:intergenic 45.0%
! ACAAATACTGGAAGCATGGC+TGG - chr5_2:44882340-44882359 Msa0771710:intron 45.0%
! CAAATACTGGAAGCATGGCT+GGG - chr5_2:44882341-44882360 Msa0771710:intron 45.0%
AACCCTACCAACTGTTTCAC+TGG + chr5_2:44882418-44882437 None:intergenic 45.0%
! AGCAAATGAGAGTGGTGTCA+AGG - chr5_2:44882513-44882532 Msa0771710:CDS 45.0%
! AAATGAGAGTGGTGTCAAGG+TGG - chr5_2:44882516-44882535 Msa0771710:CDS 45.0%
!!! TTTTATTGTTTATTTTATAT+TGG - chr5_2:44881508-44881527 Msa0771710:intron 5.0%
!!! TTTATTGTTTATTTTATATT+GGG - chr5_2:44881509-44881528 Msa0771710:intron 5.0%
GCATAAATCCCCTCACAGCA+TGG - chr5_2:44877128-44877147 Msa0771710:three_prime_UTR 50.0%
AAATTGGCCCATGCTGTGAG+GGG + chr5_2:44877139-44877158 None:intergenic 50.0%
GAAAATTGGCCCATGCTGTG+AGG + chr5_2:44877141-44877160 None:intergenic 50.0%
GTGAATCGGCATGAACGAGT+TGG + chr5_2:44877206-44877225 None:intergenic 50.0%
GAGATGTCACAGGAGTAAGG+AGG + chr5_2:44877240-44877259 None:intergenic 50.0%
GAGCCGTGATACGATGTCTT+TGG + chr5_2:44877322-44877341 None:intergenic 50.0%
CATCGTATCACGGCTCACAT+TGG - chr5_2:44877326-44877345 Msa0771710:CDS 50.0%
TAACTCGGTATACCGAGTCG+AGG + chr5_2:44877393-44877412 None:intergenic 50.0%
ACGGATACGGACATAGACAC+CGG + chr5_2:44877727-44877746 None:intergenic 50.0%
CATCGGAAAACCCCGAGATT+GGG + chr5_2:44877848-44877867 None:intergenic 50.0%
! CGGGGTTTTCCGATGGTATA+TGG - chr5_2:44877853-44877872 Msa0771710:CDS 50.0%
! TGGTTTGAGACCTAGGAGTG+TGG - chr5_2:44877873-44877892 Msa0771710:CDS 50.0%
CTGACGTGACCGAATACTTC+AGG + chr5_2:44877979-44877998 None:intergenic 50.0%
GTGATTGGAACTGAGGCTAG+AGG - chr5_2:44878062-44878081 Msa0771710:intron 50.0%
! GCTAGAGGAGTGTACAATGC+TGG - chr5_2:44878077-44878096 Msa0771710:intron 50.0%
TACAATGCTGGACAAGCCCA+AGG - chr5_2:44878089-44878108 Msa0771710:intron 50.0%
ACAATGCTGGACAAGCCCAA+GGG - chr5_2:44878090-44878109 Msa0771710:intron 50.0%
! AAGCCCAAGGGATGACGTTT+TGG - chr5_2:44878102-44878121 Msa0771710:intron 50.0%
! AGCCCAAGGGATGACGTTTT+GGG - chr5_2:44878103-44878122 Msa0771710:intron 50.0%
TGCCCAAAACGTCATCCCTT+GGG + chr5_2:44878108-44878127 None:intergenic 50.0%
CTTGTCCTCTTCCCCATCTT+GGG + chr5_2:44878154-44878173 None:intergenic 50.0%
TCTTGTCCTCTTCCCCATCT+TGG + chr5_2:44878155-44878174 None:intergenic 50.0%
GGAAGAGGACAAGAAACAGC+TGG - chr5_2:44878161-44878180 Msa0771710:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + chr5_2:44878469-44878488 None:intergenic 50.0%
!! ATGCACAAGCCGGTTTTGTG+GGG + chr5_2:44878479-44878498 None:intergenic 50.0%
!! CATGCACAAGCCGGTTTTGT+GGG + chr5_2:44878480-44878499 None:intergenic 50.0%
!! ACATGCACAAGCCGGTTTTG+TGG + chr5_2:44878481-44878500 None:intergenic 50.0%
GTGAGCATGGCCTACTTAGT+TGG - chr5_2:44879148-44879167 Msa0771710:CDS 50.0%
GTAGCTGATGTACTTCGAGC+TGG - chr5_2:44879389-44879408 Msa0771710:CDS 50.0%
CCCCACTCCCCATATATATG+AGG - chr5_2:44879693-44879712 Msa0771710:intron 50.0%
TGGGCCATGACCATCATTGA+TGG + chr5_2:44879733-44879752 None:intergenic 50.0%
! TCAGGGATGGATCTAGAGTG+TGG - chr5_2:44880396-44880415 Msa0771710:intron 50.0%
CAGCTTCAAGAGCAAGGTCT+AGG + chr5_2:44880602-44880621 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGAAG+TGG - chr5_2:44880609-44880628 Msa0771710:intron 50.0%
!! ATTGGAGGCATCATTTGGGC+TGG - chr5_2:44881080-44881099 Msa0771710:CDS 50.0%
GCTGGTTATCCTGGTGAAAC+TGG - chr5_2:44881098-44881117 Msa0771710:CDS 50.0%
GGTTATCCTGGTGAAACTGG+TGG - chr5_2:44881101-44881120 Msa0771710:CDS 50.0%
ATCCTGGTGAAACTGGTGGA+AGG - chr5_2:44881105-44881124 Msa0771710:CDS 50.0%
TCCTGGTGAAACTGGTGGAA+GGG - chr5_2:44881106-44881125 Msa0771710:CDS 50.0%
GGTTACATCTGGAGATTGGG+CGG - chr5_2:44881261-44881280 Msa0771710:intron 50.0%
GAGGGAGACTACCAATGACA+TGG - chr5_2:44882014-44882033 Msa0771710:intron 50.0%
GATCCATCATCAGGCTATCC+CGG - chr5_2:44882088-44882107 Msa0771710:intron 50.0%
TGGACCTGTGTAGAAACGGT+AGG + chr5_2:44882119-44882138 None:intergenic 50.0%
CCGTTTCTACACAGGTCCAA+AGG - chr5_2:44882120-44882139 Msa0771710:intron 50.0%
GGCTTCACAAACAGCAACAC+AGG + chr5_2:44882373-44882392 None:intergenic 50.0%
! GGTAGGGTTTGAGAGTGTGA+CGG - chr5_2:44882429-44882448 Msa0771710:CDS 50.0%
! TTTGAGAGTGTGACGGTGGA+AGG - chr5_2:44882436-44882455 Msa0771710:CDS 50.0%
GAGGTGGAAAGGGTGAAGTT+GGG - chr5_2:44882458-44882477 Msa0771710:CDS 50.0%
GGTGTCAAGGTGGTTGAAGA+AGG - chr5_2:44882526-44882545 Msa0771710:CDS 50.0%
GTCAAGGTGGTTGAAGAAGG+TGG - chr5_2:44882529-44882548 Msa0771710:CDS 50.0%
!! ACGTGGGTTGGAGATGTCAC+AGG + chr5_2:44877250-44877269 None:intergenic 55.0%
ATACCGAGTCGAGGAATGGC+AGG + chr5_2:44877384-44877403 None:intergenic 55.0%
CGGTATACCGAGTCGAGGAA+TGG + chr5_2:44877388-44877407 None:intergenic 55.0%
GTCAGTGTCCTTGTCGTGTC+CGG - chr5_2:44877705-44877724 Msa0771710:CDS 55.0%
CATAGACACCGGACACGACA+AGG + chr5_2:44877716-44877735 None:intergenic 55.0%
CCATCGGAAAACCCCGAGAT+TGG + chr5_2:44877849-44877868 None:intergenic 55.0%
! CCAATCTCGGGGTTTTCCGA+TGG - chr5_2:44877846-44877865 Msa0771710:CDS 55.0%
GAAGTGTAGGCCACACTCCT+AGG + chr5_2:44877886-44877905 None:intergenic 55.0%
GTGCCCAAAACGTCATCCCT+TGG + chr5_2:44878109-44878128 None:intergenic 55.0%
TGAAACTGGTGGAAGGGCTC+TGG - chr5_2:44881112-44881131 Msa0771710:CDS 55.0%
! GCTCTGGCTCAGGTTGTGTT+TGG - chr5_2:44881128-44881147 Msa0771710:CDS 55.0%
! CAGTGTTACTGCACGCAGTC+AGG - chr5_2:44881240-44881259 Msa0771710:intron 55.0%
GCACGCAGTCAGGTTACATC+TGG - chr5_2:44881250-44881269 Msa0771710:intron 55.0%
CTACCGGGATAGCCTGATGA+TGG + chr5_2:44882094-44882113 None:intergenic 55.0%
! AGGGTTTGAGAGTGTGACGG+TGG - chr5_2:44882432-44882451 Msa0771710:CDS 55.0%
ACGGTGGAAGGAGGTGGAAA+GGG - chr5_2:44882448-44882467 Msa0771710:CDS 55.0%
GGAGGTGGAAAGGGTGAAGT+TGG - chr5_2:44882457-44882476 Msa0771710:CDS 55.0%
GCTCCTGCCATTCCTCGACT+CGG - chr5_2:44877378-44877397 Msa0771710:CDS 60.0%
AGGGACCCAAGATGGGGAAG+AGG - chr5_2:44878146-44878165 Msa0771710:intron 60.0%
GCCCTTCCACCAGTTTCACC+AGG + chr5_2:44881110-44881129 None:intergenic 60.0%
! GAGAGTGTGACGGTGGAAGG+AGG - chr5_2:44882439-44882458 Msa0771710:CDS 60.0%
AGTGTGACGGTGGAAGGAGG+TGG - chr5_2:44882442-44882461 Msa0771710:CDS 60.0%
GACGGTGGAAGGAGGTGGAA+AGG - chr5_2:44882447-44882466 Msa0771710:CDS 60.0%
!! GTCGGTGTCGGACACGACAC+GGG + chr5_2:44877633-44877652 None:intergenic 65.0%
!! CGTCGGTGTCGGACACGACA+CGG + chr5_2:44877634-44877653 None:intergenic 65.0%
! TGGTGGAAGGGCTCTGGCTC+AGG - chr5_2:44881118-44881137 Msa0771710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 44877069 44882839 44877069 ID=Msa0771710;Name=Msa0771710
chr5_2 mRNA 44877069 44882839 44877069 ID=Msa0771710-mRNA-1;Parent=Msa0771710;Name=Msa0771710-mRNA-1;_AED=0.25;_eAED=0.25;_QI=33|1|1|1|1|1|6|236|794
chr5_2 exon 44877069 44877894 44877069 ID=Msa0771710-mRNA-1:exon:13648;Parent=Msa0771710-mRNA-1
chr5_2 exon 44878744 44879508 44878744 ID=Msa0771710-mRNA-1:exon:13647;Parent=Msa0771710-mRNA-1
chr5_2 exon 44880498 44880595 44880498 ID=Msa0771710-mRNA-1:exon:13646;Parent=Msa0771710-mRNA-1
chr5_2 exon 44880990 44881159 44880990 ID=Msa0771710-mRNA-1:exon:13645;Parent=Msa0771710-mRNA-1
chr5_2 exon 44881544 44881846 44881544 ID=Msa0771710-mRNA-1:exon:13644;Parent=Msa0771710-mRNA-1
chr5_2 exon 44882348 44882839 44882348 ID=Msa0771710-mRNA-1:exon:13643;Parent=Msa0771710-mRNA-1
chr5_2 five_prime_UTR 44882807 44882839 44882807 ID=Msa0771710-mRNA-1:five_prime_utr;Parent=Msa0771710-mRNA-1
chr5_2 CDS 44882348 44882806 44882348 ID=Msa0771710-mRNA-1:cds;Parent=Msa0771710-mRNA-1
chr5_2 CDS 44881544 44881846 44881544 ID=Msa0771710-mRNA-1:cds;Parent=Msa0771710-mRNA-1
chr5_2 CDS 44880990 44881159 44880990 ID=Msa0771710-mRNA-1:cds;Parent=Msa0771710-mRNA-1
chr5_2 CDS 44880498 44880595 44880498 ID=Msa0771710-mRNA-1:cds;Parent=Msa0771710-mRNA-1
chr5_2 CDS 44878744 44879508 44878744 ID=Msa0771710-mRNA-1:cds;Parent=Msa0771710-mRNA-1
chr5_2 CDS 44877305 44877894 44877305 ID=Msa0771710-mRNA-1:cds;Parent=Msa0771710-mRNA-1
chr5_2 three_prime_UTR 44877069 44877304 44877069 ID=Msa0771710-mRNA-1:three_prime_utr;Parent=Msa0771710-mRNA-1
Gene Sequence

>Msa0771710

ATGCTCTGTAATCTGTTCAGCACGTTGCATAAATCCCCTCACAGCATGGGCCAATTTTCCATCACCATTACTTTCATTTTTCTCTTCTTAACTCGCTACAACCAACTCGTTCATGCCGATTCACCGACTAATGTACCTCCTTACTCCTGTGACATCTCCAACCCACGTACAAAATTCTTTCCCTTTTGCAATCTCAACCTTACAATCACTCAAAGAGCCAAAGACATCGTATCACGGCTCACATTGGATGAGAAAATCTCTCAACTCGTTAACACAGCTCCTGCCATTCCTCGACTCGGTATACCGAGTTATCAATGGTGGAATGAAGCTTTGCACGGTGTCTCTTATGTTGGTAAGGGGATAAGATTGAATGGTAGTGTTACAGCTGCAACTAGTTTCCCTCAAATCATTCTTACGGCTGCTTCTTTTGATCCCAAACTTTGGTACCGAATCAGTAAGGTGATTGGAACTGAGGCTAGAGGAGTGTACAATGCTGGACAAGCCCAAGGGATGACGTTTTGGGCACCAAACATAAACATATTTAGGGACCCAAGATGGGGAAGAGGACAAGAAACAGCTGGTGAAGATCCTTTGGTAAATTCAAAGTATGGTGTTTCTTATGTGAGAGGACTTCAAGGTGATTCCTTTGAAGGTGGGAAATTAATTGGAGGTCGTCTTAAAGCTTCTGCTTGTTGCAAACACTTTACTGCCTATGATTTGGAAAATTGGAAGGGTGTGAATCGTTATGTTTTTGATGCCAAAGTTACTTTACAAGATTTGGCGGATACGTATCAACCCTCATTTCATAGTTGCATACAACAAGGACGATCTAGTGGAATAATGTGTGCTTATAACCGTGTCAATGGAGTTCCAAACTGTGCAGATTACAATCTTTTAACCAATACGGCAAGGAAAAAATGGAATTTCAATGGGTATATTGCGTCGGATTGTGACGCAGTTCGATACATATATGAGAAACAAGGTTATGCAAAAACACCAGAGGATGTTGTAGCTGATGTACTTCGAGCTGGGATGGATCTAGAGTGTGGTGATTACATGACAAAGCATGCAAAGTCAGCAGTATTACAAAAAAAAATTCCCATATCTCAAATTGACCGTGCCCTACACAATCTATTTACCATTAGAATAAGACTAGGTTTGTTTGATGGGAATCCAACCAAACTTCAATATGGCAGAATTGGTCCAAATCAAGTATGCTCTAAAGAAAACCTAGACCTTGCTCTTGAAGCTGCAAGAAGTGGCATTGTACTTTTAAAAAACACTGCCTCAATTCTCCCACTTCCAAGAGTAAATACCCTTGGAGTTATAGGCCCTAATGCCAATAAATCATCAATAGTTCTTTTAGCAAACTATTTTGGTCCTCCTTGTAAACAAGTATCCATATTAAAAGGCTTTTACACTTATGCCAGCCAGACACATTATCGTTCTGGATGTACTGATGGAGTAAAGTGTGCTTCAGCTGAAATTGACCGAGCAGTTGAAGTTGCTAAAATAAGTGATTATGTTATTTTGGTTATGGGATTGGACCAAAGTCAAGAGACGGAAACACTTGATAGAGTTCATTTAGAGTTACCTGGTAAGCAACAGAAACTTATTAACAGTGTTGCTAAAGCTTCTAAGAAGCCTGTTATTTTGGTAATTTTGTGTGGTGGTCGTGTTGATATTACTTTTGCTAAGAATAATGACAAAATTGGAGGCATCATTTGGGCTGGTTATCCTGGTGAAACTGGTGGAAGGGCTCTGGCTCAGGTTGTGTTTGGTGACTATAACCCTGGAGGGAGACTACCAATGACATGGTACCCAAAAGATTTCATCAAAATACCAATGACAGACATGAGAATGAGAGCTGATCCATCATCAGGCTATCCCGGTAGAACCTACCGTTTCTACACAGGTCCAAAGGTCTACGAATTCGGCTATGGCCTAAGCTACTCAAATTATTCCTACAACTTCATTTCCGTCAAAAACAACAACCTTCACATCAACCAGTCAACCACTCATTCGATACTCGAAAACTCTGAAACAATCCGTTACAAACTTGTTTCAGAGTTAGGCAAAAAAGCATGTAAAACCATGTCCATTTCTGTAACATTGGGAATTACAAATACTGGAAGCATGGCTGGGAAACATCCTGTGTTGCTGTTTGTGAAGCCAAAGAAAGGTAGAAATGGAAATCCAGTGAAACAGTTGGTAGGGTTTGAGAGTGTGACGGTGGAAGGAGGTGGAAAGGGTGAAGTTGGGTTCGAAGTTAGTGTTTGTGAGCATCTTAGTAGAGCAAATGAGAGTGGTGTCAAGGTGGTTGAAGAAGGTGGTTATTTGTTGGTTGTGGGAGAGGAAGAGTACTCAATAAGTATCACTCTTTGA
Protein sequence

>Msa0771710

MLCNLFSTLHKSPHSMGQFSITITFIFLFLTRYNQLVHADSPTNVPPYSCDISNPRTKFFPFCNLNLTITQRAKDIVSRLTLDEKISQLVNTAPAIPRLGIPSYQWWNEALHGVSYVGKGIRLNGSVTAATSFPQIILTAASFDPKLWYRISKVIGTEARGVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPLVNSKYGVSYVRGLQGDSFEGGKLIGGRLKASACCKHFTAYDLENWKGVNRYVFDAKVTLQDLADTYQPSFHSCIQQGRSSGIMCAYNRVNGVPNCADYNLLTNTARKKWNFNGYIASDCDAVRYIYEKQGYAKTPEDVVADVLRAGMDLECGDYMTKHAKSAVLQKKIPISQIDRALHNLFTIRIRLGLFDGNPTKLQYGRIGPNQVCSKENLDLALEAARSGIVLLKNTASILPLPRVNTLGVIGPNANKSSIVLLANYFGPPCKQVSILKGFYTYASQTHYRSGCTDGVKCASAEIDRAVEVAKISDYVILVMGLDQSQETETLDRVHLELPGKQQKLINSVAKASKKPVILVILCGGRVDITFAKNNDKIGGIIWAGYPGETGGRALAQVVFGDYNPGGRLPMTWYPKDFIKIPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSNYSYNFISVKNNNLHINQSTTHSILENSETIRYKLVSELGKKACKTMSISVTLGITNTGSMAGKHPVLLFVKPKKGRNGNPVKQLVGFESVTVEGGGKGEVGFEVSVCEHLSRANESGVKVVEEGGYLLVVGEEEYSISITL*