AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850280 MtrunA17_Chr5g0425431 96.795 780 24 1 16 794 1 780 0.0 1561
Msa0850280 MtrunA17_Chr5g0425451 94.373 782 41 1 16 794 1 782 0.0 1508
Msa0850280 MtrunA17_Chr5g0425471 91.432 782 64 1 16 794 1 782 0.0 1461
Msa0850280 MtrunA17_Chr5g0425531 84.331 785 117 3 16 794 1 785 0.0 1349
Msa0850280 MtrunA17_Chr3g0115601 69.987 773 225 3 23 794 10 776 0.0 1168
Msa0850280 MtrunA17_Chr5g0411571 48.875 800 367 12 16 794 4 782 0.0 782
Msa0850280 MtrunA17_Chr1g0207281 49.933 751 359 12 42 784 34 775 0.0 745
Msa0850280 MtrunA17_Chr2g0278761 48.280 756 362 12 48 794 40 775 0.0 725
Msa0850280 MtrunA17_Chr7g0269871 47.145 753 371 12 48 792 28 761 0.0 720
Msa0850280 MtrunA17_Chr1g0194841 46.272 778 388 10 20 792 3 755 0.0 720
Msa0850280 MtrunA17_Chr2g0294751 46.547 782 385 14 16 792 1 754 0.0 720
Msa0850280 MtrunA17_Chr4g0050591 46.360 783 392 13 20 794 12 774 0.0 711
Msa0850280 MtrunA17_Chr6g0461231 28.251 669 353 31 48 650 14 621 2.63e-42 164
Msa0850280 MtrunA17_Chr6g0461191 27.886 667 354 28 50 650 16 621 3.51e-42 163
Msa0850280 MtrunA17_Chr2g0292341 27.937 630 329 26 69 625 37 614 1.25e-40 159
Msa0850280 MtrunA17_Chr3g0118971 27.164 670 363 29 52 656 18 627 1.51e-40 158
Msa0850280 MtrunA17_Chr3g0104081 26.866 603 349 23 62 607 22 589 3.41e-40 157
Msa0850280 MtrunA17_Chr6g0461221 26.190 672 371 26 48 654 15 626 9.21e-39 154
Msa0850280 MtrunA17_Chr6g0461211 27.356 658 331 28 69 650 35 621 3.54e-38 151
Msa0850280 MtrunA17_Chr7g0253561 27.545 668 331 30 62 650 4 597 1.31e-37 149
Msa0850280 MtrunA17_Chr5g0429581 25.748 602 354 22 64 607 7 573 4.98e-36 144
Msa0850280 MtrunA17_Chr5g0429541 25.676 592 343 22 69 607 12 559 7.30e-33 134
Msa0850280 MtrunA17_Chr7g0253551 27.740 447 231 20 59 448 26 437 3.63e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850280 AT1G78060.1 63.479 753 264 7 46 794 22 767 0.0 1011
Msa0850280 AT5G10560.1 50.195 771 356 9 46 794 28 792 0.0 786
Msa0850280 AT3G19620.1 50.602 747 344 14 48 784 27 758 0.0 749
Msa0850280 AT5G09730.1 48.271 781 383 14 19 794 9 773 0.0 731
Msa0850280 AT5G64570.1 48.005 777 380 12 27 794 23 784 0.0 726
Msa0850280 AT1G02640.1 46.144 791 378 14 14 792 4 758 0.0 714
Msa0850280 AT5G49360.1 46.931 782 380 17 21 792 14 770 0.0 697
Msa0850280 AT5G64570.3 51.384 578 271 8 27 602 23 592 0.0 603
Msa0850280 AT5G64570.2 48.050 641 310 11 162 794 1 626 0.0 594
Msa0850280 AT5G09700.1 44.581 489 258 7 312 794 45 526 8.82e-134 408
Msa0850280 AT3G47040.4 26.348 649 370 26 62 653 10 607 2.33e-41 161
Msa0850280 AT3G47000.1 26.161 646 369 28 62 650 10 604 8.53e-39 153
Msa0850280 AT5G04885.3 26.324 623 357 25 68 629 36 617 1.61e-38 153
Msa0850280 AT5G04885.1 26.324 623 357 25 68 629 36 617 1.61e-38 153
Msa0850280 AT5G04885.2 26.324 623 357 25 68 629 53 634 1.62e-38 153
Msa0850280 AT3G47040.1 25.487 667 378 28 62 653 10 632 1.67e-38 152
Msa0850280 AT3G47010.1 26.892 621 362 26 62 625 11 596 1.15e-37 150
Msa0850280 AT3G47050.1 26.264 613 351 25 58 609 6 578 5.62e-37 148
Msa0850280 AT3G47010.2 26.645 623 360 28 62 625 11 595 6.05e-36 144
Msa0850280 AT5G20950.2 28.777 417 220 17 72 436 36 427 3.89e-33 136
Msa0850280 AT5G20950.1 28.777 417 220 17 72 436 36 427 3.89e-33 136
Msa0850280 AT5G20950.3 28.777 417 220 17 72 436 114 505 5.51e-33 136
Msa0850280 AT3G62710.1 27.023 618 335 29 74 649 105 648 3.32e-32 134
Msa0850280 AT5G20940.1 30.495 364 211 15 98 448 112 446 7.05e-31 129
Msa0850280 AT3G47040.3 29.032 434 243 16 62 448 10 425 8.13e-31 127
Msa0850280 AT3G47000.3 29.147 422 233 18 62 436 10 412 3.17e-30 125
Msa0850280 AT3G47040.2 24.484 678 379 30 62 653 10 640 1.71e-29 125
Msa0850280 AT3G47010.4 27.880 434 248 17 62 448 11 426 1.29e-27 117
Msa0850280 AT3G47000.2 25.482 467 284 20 206 650 3 427 2.16e-25 110
Msa0850280 AT3G47010.3 26.637 443 270 21 208 625 5 417 4.75e-25 109
Msa0850280 AT3G47050.2 26.064 376 218 13 58 389 6 365 2.59e-22 100

Find 206 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTATTGATGATTTAT+TGG 0.145046 5_4:+39114968 None:intergenic
CACCAAACATAAACATATTT+AGG 0.152169 5_4:-39117578 Msa0850280:CDS
AATAAGTGATTATGTTATTT+TGG 0.156153 5_4:-39114796 Msa0850280:CDS
TTCTAAGAAGCCTGTTATTT+TGG 0.174390 5_4:-39114673 Msa0850280:CDS
CTGCCTATGATTTGGAAAAT+TGG 0.179123 5_4:-39117395 Msa0850280:CDS
GCCAAGAATAATGACAAAAT+TGG 0.214168 5_4:-39114615 Msa0850280:CDS
TTTCCATTTCTACCTTTCTT+TGG 0.223144 5_4:+39113286 None:intergenic
TTTGAAGGTGGGAAACTAAT+TGG 0.240728 5_4:-39117456 Msa0850280:CDS
TCAGGTTACTTTACAAGATT+TGG 0.243170 5_4:-39116989 Msa0850280:intron
TTGATGATTTATTGGCATTA+GGG 0.250324 5_4:+39114976 None:intergenic
AAGCTCAAGGGATGACGTTT+TGG 0.256760 5_4:-39117602 Msa0850280:CDS
AAACAAGTATCCATATTAAA+AGG 0.276787 5_4:-39114918 Msa0850280:CDS
ACACTTTACTGCCTATGATT+TGG 0.277559 5_4:-39117403 Msa0850280:CDS
GTAAATACCCTTGGAGTTAT+AGG 0.279725 5_4:-39114999 Msa0850280:CDS
ACAAAATTGGAGGCATCATT+TGG 0.281644 5_4:-39114602 Msa0850280:CDS
ACTGATTCGGTACCAAAGTT+TGG 0.290827 5_4:+39118185 None:intergenic
ATTGATGATTTATTGGCATT+AGG 0.294469 5_4:+39114975 None:intergenic
TGTGCTTACAACCGTGTTAA+TGG 0.296603 5_4:-39116904 Msa0850280:CDS
TCTTTAGAGCATACTTGATT+TGG 0.301730 5_4:+39115104 None:intergenic
TCTTGTCCTCTTCCCCATCT+AGG 0.308544 5_4:+39117552 None:intergenic
TATGTAATGGAAAGCTTGAT+TGG 0.321978 5_4:-39112981 Msa0850280:three_prime_UTR
AATTCTGCCATATTGAAGTT+TGG 0.332874 5_4:+39115130 None:intergenic
GGAGGTGGAAAGGGTGAAGT+TGG 0.339877 5_4:-39113220 Msa0850280:CDS
TACAAACTTGTTTCAGAGTT+AGG 0.340365 5_4:-39113406 Msa0850280:CDS
AAACTTCAATATGGCAGAAT+TGG 0.347201 5_4:-39115128 Msa0850280:CDS
CACAAAATTACCAAAATAAC+AGG 0.354358 5_4:+39114663 None:intergenic
CTGATTCGGTACCAAAGTTT+GGG 0.355066 5_4:+39118186 None:intergenic
TCCCTAAATATGTTTATGTT+TGG 0.358184 5_4:+39117576 None:intergenic
CCTTTGGTAAATTCAAAGTA+TGG 0.359897 5_4:-39117513 Msa0850280:CDS
ACATATTTAGGGATCCTAGA+TGG 0.360448 5_4:-39117566 Msa0850280:CDS
ACATTGGGAATTACAAATAC+TGG 0.364595 5_4:-39113349 Msa0850280:CDS
CTTCAAGGTGATTCCTTTGA+AGG 0.366164 5_4:-39117471 Msa0850280:CDS
CGGTGTTTCTTATGTTGGTA+AGG 0.366894 5_4:-39118283 Msa0850280:CDS
ATGCATATTAATTTACTCAT+TGG 0.369435 5_4:+39112863 None:intergenic
CATGTCCATTTCTGTAACAT+TGG 0.372834 5_4:-39113365 Msa0850280:CDS
GGCACGGTCGATTTGAGATA+TGG 0.377068 5_4:+39115208 None:intergenic
AAGTAATGGTGATGGAAAAT+TGG 0.378794 5_4:+39118568 None:intergenic
ATCATTTGGGCTGGTTATCC+TGG 0.383440 5_4:-39114588 Msa0850280:CDS
GCTGGTTATCCTGGTGAAAC+TGG 0.384326 5_4:-39114579 Msa0850280:CDS
GGTCCAAAGGTCTACGAATT+CGG 0.387773 5_4:-39113544 Msa0850280:CDS
TTTGACGGAAATGAAGTTGT+AGG 0.388452 5_4:+39113495 None:intergenic
ACAAATACTGGAAGCATGGC+TGG 0.392102 5_4:-39113337 Msa0850280:CDS
AATTCCCAATGTTACAGAAA+TGG 0.398418 5_4:+39113360 None:intergenic
ACCAAACATAAACATATTTA+GGG 0.398770 5_4:-39117577 Msa0850280:CDS
AGATTGTAATCTGCACAGTT+TGG 0.398988 5_4:+39116877 None:intergenic
AATCCAACCAAACTTCAATA+TGG 0.399490 5_4:-39115137 Msa0850280:CDS
TGGTGGAAGGGCTCTGGCTC+AGG 0.399913 5_4:-39114559 Msa0850280:CDS
AGGAATAATTTGAGTAGCTT+AGG 0.401616 5_4:+39113515 None:intergenic
CAAACCTAGTCTTATTCTAA+TGG 0.402033 5_4:+39115169 None:intergenic
GCTCTGGCTCAGGTTGTGTT+TGG 0.406314 5_4:-39114549 Msa0850280:CDS
TAGCCGAATTCGTAGACCTT+TGG 0.407677 5_4:+39113541 None:intergenic
ATAAGACTAGGTTTGTTTGA+TGG 0.411429 5_4:-39115161 Msa0850280:CDS
ACTCCAAGGGTATTTACTCT+TGG 0.414446 5_4:+39115005 None:intergenic
AACCCTACCAACTGTTTCAC+TGG 0.418928 5_4:+39113262 None:intergenic
AGGTGGTTATTTGTTGGTTG+TGG 0.420306 5_4:-39113131 Msa0850280:CDS
ATAAGTTTCTGTTGCTTACC+AGG 0.420753 5_4:+39114714 None:intergenic
ATCAAGTAAAGAATAACTAA+TGG 0.425783 5_4:-39113039 Msa0850280:three_prime_UTR
TGAAACTGGTGGAAGGGCTC+TGG 0.429489 5_4:-39114565 Msa0850280:CDS
TAAGACTAGGTTTGTTTGAT+GGG 0.430129 5_4:-39115160 Msa0850280:CDS
AACAGCTGGGGAAGATCCTT+TGG 0.430162 5_4:-39117529 Msa0850280:CDS
CAGCTTCAAGAGCAAGGTCT+AGG 0.436293 5_4:+39115078 None:intergenic
AAGCCAAAGAAAGGTAGAAA+TGG 0.439382 5_4:-39113289 Msa0850280:CDS
CAAAATTGGAGGCATCATTT+GGG 0.439628 5_4:-39114601 Msa0850280:CDS
CTCATTCTCATGTCTGTCAT+TGG 0.443342 5_4:+39113616 None:intergenic
TCCTATGTGAGAGGACTTCA+AGG 0.445249 5_4:-39117486 Msa0850280:CDS
TTTGAGAGTGTGACGGTGGA+AGG 0.447503 5_4:-39113241 Msa0850280:CDS
TTTCCCTCAAATCATTCTTA+CGG 0.448886 5_4:-39118223 Msa0850280:CDS
TGAAGAAGGTGGTTATTTGT+TGG 0.451987 5_4:-39113137 Msa0850280:CDS
GAGGTGGAAAGGGTGAAGTT+GGG 0.452463 5_4:-39113219 Msa0850280:CDS
GTGTTTGGTGACTATAACCC+TGG 0.452505 5_4:-39114534 Msa0850280:intron
AGCCAGACACATTATCGTTC+TGG 0.456155 5_4:-39114879 Msa0850280:CDS
TTGGCAAAAGTAATATCAAC+AGG 0.457189 5_4:+39114633 None:intergenic
ATGTCCATTTCTGTAACATT+GGG 0.459363 5_4:-39113364 Msa0850280:CDS
AATTAGTTTCCCACCTTCAA+AGG 0.461085 5_4:+39117458 None:intergenic
AGTTACTGACCTTACTGATT+CGG 0.462510 5_4:+39118172 None:intergenic
ATATGACTCTACTTATGTAA+TGG 0.464666 5_4:-39112994 Msa0850280:three_prime_UTR
GATCCATCATCAGGCTATCC+TGG 0.464763 5_4:-39113589 Msa0850280:CDS
GCACGGTCGATTTGAGATAT+GGG 0.464880 5_4:+39115209 None:intergenic
TGGCTCTTTGAGTGATGGTA+AGG 0.468209 5_4:+39118421 None:intergenic
ACGGTGGAAGGAGGTGGAAA+GGG 0.469710 5_4:-39113229 Msa0850280:CDS
CGGTATACCGAGTCGAAGAA+TGG 0.470866 5_4:+39118335 None:intergenic
TTATTTGTTGGTTGTGGGAG+AGG 0.471909 5_4:-39113125 Msa0850280:CDS
GGTAAGGTTGAGATTGCAAA+AGG 0.475896 5_4:+39118437 None:intergenic
CTGTTTGTCAAGCCAAAGAA+AGG 0.476513 5_4:-39113298 Msa0850280:CDS
TTGCACGGTGTTTCTTATGT+TGG 0.479426 5_4:-39118288 Msa0850280:CDS
CTGCCATATTGAAGTTTGGT+TGG 0.480427 5_4:+39115134 None:intergenic
AATATGGATACTTGTTTACA+AGG 0.482332 5_4:+39114924 None:intergenic
CATATTTAGGGATCCTAGAT+GGG 0.483048 5_4:-39117565 Msa0850280:CDS
GTGTTTCCGTCTCTTGACTT+TGG 0.484702 5_4:+39114760 None:intergenic
GGTGGTTATTTGTTGGTTGT+GGG 0.491601 5_4:-39113130 Msa0850280:CDS
CAAGGTGATTCCTTTGAAGG+TGG 0.492851 5_4:-39117468 Msa0850280:CDS
AGGGTATTTACTCTTGGAAG+TGG 0.494590 5_4:+39115011 None:intergenic
GTTGTATGAATGAAGGTGAT+TGG 0.496646 5_4:-39117657 Msa0850280:intron
CTTAATATGAGACGGAGGAT+AGG 0.499315 5_4:+39112919 None:intergenic
ATCCAGAACGATAATGTGTC+TGG 0.501407 5_4:+39114877 None:intergenic
GGTGTTTCTTATGTTGGTAA+GGG 0.501707 5_4:-39118282 Msa0850280:CDS
GAGCCGTGATACGATGTCTT+TGG 0.502639 5_4:+39118401 None:intergenic
GTCTTTGGCTCTTTGAGTGA+TGG 0.503686 5_4:+39118416 None:intergenic
AGGTACATTAGTCGGTGAAT+CGG 0.504246 5_4:+39118503 None:intergenic
GACGGTGGAAGGAGGTGGAA+AGG 0.507657 5_4:-39113230 Msa0850280:CDS
GGTAAGGGGATAAGATTGAA+TGG 0.507764 5_4:-39118267 Msa0850280:CDS
ATGAGAGCTGATCCATCATC+AGG 0.511303 5_4:-39113598 Msa0850280:CDS
TTGGAGATGTCACAGGAGTA+AGG 0.511401 5_4:+39118480 None:intergenic
ACATCAGCTACAACATCCTC+TGG 0.517153 5_4:+39116296 None:intergenic
TGGTTGACTGGTTGATGTGA+AGG 0.523221 5_4:+39113464 None:intergenic
CTACCAGGATAGCCTGATGA+TGG 0.523266 5_4:+39113586 None:intergenic
TTCTTGCAGCTTCAAGAGCA+AGG 0.526483 5_4:+39115072 None:intergenic
GGTTACTTTACAAGATTTGG+CGG 0.526554 5_4:-39116986 Msa0850280:CDS
TATCGTTCTGGATGTACTGA+TGG 0.530389 5_4:-39114867 Msa0850280:CDS
AAGAATAATGACAAAATTGG+AGG 0.530513 5_4:-39114612 Msa0850280:CDS
GGAAGAGGACAAGAAACAGC+TGG 0.534154 5_4:-39117543 Msa0850280:CDS
GCTAGAGGAGTGTACAATGC+TGG 0.534160 5_4:-39117627 Msa0850280:CDS
ATTGGAGGCATCATTTGGGC+TGG 0.536363 5_4:-39114597 Msa0850280:CDS
CAGCCGTAAGAATGATTTGA+GGG 0.537119 5_4:+39118220 None:intergenic
TCTTGGAAGTGGGAGAATTG+AGG 0.537861 5_4:+39115022 None:intergenic
TTAATATGAGACGGAGGATA+GGG 0.539045 5_4:+39112920 None:intergenic
AAGGTCTACGAATTCGGCTA+TGG 0.539382 5_4:-39113538 Msa0850280:CDS
CCTTTGGACCTGTGTAGAAA+CGG 0.540578 5_4:+39113557 None:intergenic
AATGGTAAATAGATTGTGTA+GGG 0.541798 5_4:+39115187 None:intergenic
AAGGTGATTCCTTTGAAGGT+GGG 0.542147 5_4:-39117467 Msa0850280:CDS
ATCCAGTGAAACAGTTGGTA+GGG 0.542668 5_4:-39113264 Msa0850280:CDS
GCATAAATCCCCTCACAGCA+TGG 0.543300 5_4:-39118592 Msa0850280:CDS
CTATGATTTGGAAAATTGGA+AGG 0.547121 5_4:-39117391 Msa0850280:CDS
GGTGTCAAGGTGGTTGAAGA+AGG 0.548262 5_4:-39113151 Msa0850280:CDS
TACAATGCTGGACAAGCTCA+AGG 0.548478 5_4:-39117615 Msa0850280:CDS
CTTCCAAGAGTAAATACCCT+TGG 0.550798 5_4:-39115008 Msa0850280:CDS
GGCTTGACAAACAGCAACAC+AGG 0.552059 5_4:+39113307 None:intergenic
AGGGATCCTAGATGGGGAAG+AGG 0.553305 5_4:-39117558 Msa0850280:CDS
CAATGTTACAGAAATGGACA+TGG 0.553553 5_4:+39113366 None:intergenic
AGAGTTCATTTAGAGTTACC+TGG 0.556126 5_4:-39114732 Msa0850280:CDS
GCCCTTCCACCAGTTTCACC+AGG 0.557917 5_4:+39114570 None:intergenic
TAAGGTTGAGATTGCAAAAG+GGG 0.559131 5_4:+39118439 None:intergenic
ATACCGAGTCGAAGAATGGC+AGG 0.560255 5_4:+39118339 None:intergenic
AATCCAGTGAAACAGTTGGT+AGG 0.561271 5_4:-39113265 Msa0850280:CDS
GTGTTTCTTATGTTGGTAAG+GGG 0.562805 5_4:-39118281 Msa0850280:CDS
TCGGTATACCGAGTTATCAA+TGG 0.563582 5_4:-39118323 Msa0850280:CDS
TCATTCCACCATTGATAACT+CGG 0.565942 5_4:+39118315 None:intergenic
CCATACTTTGAATTTACCAA+AGG 0.567024 5_4:+39117513 None:intergenic
TAATGGTAAATAGATTGTGT+AGG 0.569087 5_4:+39115186 None:intergenic
GTGAATCGGCATGAACGAGT+TGG 0.570073 5_4:+39118517 None:intergenic
ATCCTGGTGAAACTGGTGGA+AGG 0.570539 5_4:-39114572 Msa0850280:CDS
GAAGGTGGGAAACTAATTGG+AGG 0.571323 5_4:-39117453 Msa0850280:CDS
GCTCTTGAAGCTGCAAGAAG+TGG 0.571675 5_4:-39115068 Msa0850280:CDS
CATAAATCCCCTCACAGCAT+GGG 0.572541 5_4:-39118591 Msa0850280:CDS
CAAATACTGGAAGCATGGCT+GGG 0.573487 5_4:-39113336 Msa0850280:CDS
ACTTTGGTACCGAATCAGTA+AGG 0.574437 5_4:-39118181 Msa0850280:intron
GAGAGTGTGACGGTGGAAGG+AGG 0.575492 5_4:-39113238 Msa0850280:CDS
AGTGTGACGGTGGAAGGAGG+TGG 0.578214 5_4:-39113235 Msa0850280:CDS
GTAAGGTTGAGATTGCAAAA+GGG 0.580172 5_4:+39118438 None:intergenic
AGAACGATAATGTGTCTGGC+TGG 0.580712 5_4:+39114881 None:intergenic
AGCAAATGAGAGTGGTGTCA+AGG 0.581128 5_4:-39113164 Msa0850280:CDS
GTATCGAATGAGTGGTTGAC+TGG 0.582453 5_4:+39113452 None:intergenic
AATTACAAATACTGGAAGCA+TGG 0.582605 5_4:-39113341 Msa0850280:CDS
GCAGCCGTAAGAATGATTTG+AGG 0.582798 5_4:+39118219 None:intergenic
CATCGTATCACGGCTCACAT+TGG 0.582953 5_4:-39118394 Msa0850280:CDS
GTAGCTGATGTACTTCGAGC+TGG 0.583158 5_4:-39116284 Msa0850280:intron
AAAATTGGCCCATGCTGTGA+GGG 0.583831 5_4:+39118583 None:intergenic
TCCTGGTGAAACTGGTGGAA+GGG 0.585464 5_4:-39114571 Msa0850280:CDS
ACTCTGAAACAAGTTTGTAA+CGG 0.590668 5_4:+39113410 None:intergenic
GAGTAAGGAGGTACATTAGT+CGG 0.591459 5_4:+39118495 None:intergenic
CATTAGGGCCTATAACTCCA+AGG 0.594911 5_4:+39114991 None:intergenic
GAAGAGGACAAGAAACAGCT+GGG 0.598422 5_4:-39117542 Msa0850280:CDS
AAAAGACACTTAATATGAGA+CGG 0.601763 5_4:+39112911 None:intergenic
GGGTATTTACTCTTGGAAGT+GGG 0.605290 5_4:+39115012 None:intergenic
TAGAAACGGTAGGTTCTACC+AGG 0.607742 5_4:+39113571 None:intergenic
CCGTTTCTACACAGGTCCAA+AGG 0.609130 5_4:-39113557 Msa0850280:CDS
TCAGGGATGGATGTAGAGTG+TGG 0.611464 5_4:-39115281 Msa0850280:intron
AGAACCTACCGTTTCTACAC+AGG 0.612051 5_4:-39113565 Msa0850280:CDS
GGTTATCCTGGTGAAACTGG+TGG 0.612813 5_4:-39114576 Msa0850280:CDS
ACGTGGGTTGGAGATGTCAC+AGG 0.612949 5_4:+39118473 None:intergenic
GTCAAGGTGGTTGAAGAAGG+TGG 0.614362 5_4:-39113148 Msa0850280:CDS
TGGAAATCCAGTGAAACAGT+TGG 0.620701 5_4:-39113269 Msa0850280:CDS
GTATACCGAGTTATCAATGG+TGG 0.620903 5_4:-39118320 Msa0850280:CDS
TTCTATGCAACTATGAAACG+AGG 0.622993 5_4:+39116951 None:intergenic
TTAAATCAGGTATATTGCGT+CGG 0.624270 5_4:-39116369 Msa0850280:intron
TGGACCTGTGTAGAAACGGT+AGG 0.625209 5_4:+39113561 None:intergenic
TTTACCATTAGAATAAGACT+AGG 0.630221 5_4:-39115173 Msa0850280:CDS
TATGGTGTTTCCTATGTGAG+AGG 0.630566 5_4:-39117495 Msa0850280:CDS
TAAATAGATTGTGTAGGGCA+CGG 0.632594 5_4:+39115192 None:intergenic
CGATACATATATGAGAAACA+AGG 0.634724 5_4:-39116332 Msa0850280:CDS
GGTAGGGTTTGAGAGTGTGA+CGG 0.635292 5_4:-39113248 Msa0850280:CDS
GCTCCTGCCATTCTTCGACT+CGG 0.637161 5_4:-39118342 Msa0850280:CDS
AGGGTTTGAGAGTGTGACGG+TGG 0.638866 5_4:-39113245 Msa0850280:CDS
ATTGGACCAAAGTCAAGAGA+CGG 0.639353 5_4:-39114766 Msa0850280:CDS
GAGCCAAAGACATCGTATCA+CGG 0.640636 5_4:-39118404 Msa0850280:CDS
ATAGAACAAGGACGATCTAG+TGG 0.641432 5_4:-39116934 Msa0850280:CDS
TTTCATAGTTGCATAGAACA+AGG 0.642706 5_4:-39116946 Msa0850280:CDS
CTTAGTAGAGCAAATGAGAG+TGG 0.648348 5_4:-39113172 Msa0850280:CDS
GTGATTGGAACTGAGGCTAG+AGG 0.649624 5_4:-39117642 Msa0850280:CDS
ATTAGGGCCTATAACTCCAA+GGG 0.662705 5_4:+39114992 None:intergenic
AATGAAGGTGATTGGAACTG+AGG 0.666042 5_4:-39117649 Msa0850280:intron
AGTTTGGAACTCCATTAACA+CGG 0.668614 5_4:+39116893 None:intergenic
ATATTTAGGGATCCTAGATG+GGG 0.672629 5_4:-39117564 Msa0850280:CDS
TATGATTTGGAAAATTGGAA+GGG 0.673969 5_4:-39117390 Msa0850280:CDS
ACAATGCTGGACAAGCTCAA+GGG 0.675868 5_4:-39117614 Msa0850280:CDS
ACCTTGAAGTCCTCTCACAT+AGG 0.676616 5_4:+39117485 None:intergenic
TCTATGCAACTATGAAACGA+GGG 0.684013 5_4:+39116952 None:intergenic
GAGGTAGACTACCAATGACA+TGG 0.687132 5_4:-39113663 Msa0850280:CDS
AAGAGGACAAGAAACAGCTG+GGG 0.694770 5_4:-39117541 Msa0850280:CDS
TGGTGGAATGAAGCTTTGCA+CGG 0.702092 5_4:-39118303 Msa0850280:CDS
ATGGATACTTGTTTACAAGG+AGG 0.708927 5_4:+39114927 None:intergenic
GAAAATTGGCCCATGCTGTG+AGG 0.711405 5_4:+39118582 None:intergenic
AAATTGGCCCATGCTGTGAG+GGG 0.711472 5_4:+39118584 None:intergenic
GAGATGTCACAGGAGTAAGG+AGG 0.715685 5_4:+39118483 None:intergenic
AGACACTTAATATGAGACGG+AGG 0.717375 5_4:+39112914 None:intergenic
AAATGAGAGTGGTGTCAAGG+TGG 0.736902 5_4:-39113161 Msa0850280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATGATAATTTATTTT+CGG - chr5_4:39118564-39118583 Msa0850280:CDS 10.0%
!! TATTGTTTAATAGAAGATAT+TGG + chr5_4:39114929-39114948 None:intergenic 15.0%
!! ATAGAATTATTATGTGTTTA+CGG - chr5_4:39115297-39115316 Msa0850280:intron 15.0%
!!! TTTCTCATTAGTATTTTTAT+CGG - chr5_4:39115454-39115473 Msa0850280:intron 15.0%
!!! TTCATCATAATTTTTAGTAT+AGG - chr5_4:39115662-39115681 Msa0850280:intron 15.0%
!!! TTTCTTAATTTTACTCAATT+TGG - chr5_4:39115896-39115915 Msa0850280:intron 15.0%
!!! AATAAGTGATTATGTTATTT+TGG - chr5_4:39116715-39116734 Msa0850280:intron 15.0%
!! TATACTAGAAAAAGTTATTT+GGG + chr5_4:39117765-39117784 None:intergenic 15.0%
!! ATATACTAGAAAAAGTTATT+TGG + chr5_4:39117766-39117785 None:intergenic 15.0%
!! ACATAATTCAGTGTAATTAT+AGG + chr5_4:39113448-39113467 None:intergenic 20.0%
!! CTTCAAAAAAATCCAAATAT+GGG + chr5_4:39113566-39113585 None:intergenic 20.0%
!! TCTTCAAAAAAATCCAAATA+TGG + chr5_4:39113567-39113586 None:intergenic 20.0%
!! ATTACAATACAAACAAAACT+CGG + chr5_4:39113809-39113828 None:intergenic 20.0%
!! ACCAAACATAAACATATTTA+GGG - chr5_4:39113934-39113953 Msa0850280:intron 20.0%
!! ATGGATTTGGATTATTAAAA+TGG + chr5_4:39114493-39114512 None:intergenic 20.0%
!!! TTACAATCTTTTAACCAATA+CGG - chr5_4:39114648-39114667 Msa0850280:CDS 20.0%
!! GTTCTTATAAATTACAAAAG+TGG - chr5_4:39114748-39114767 Msa0850280:CDS 20.0%
!!! TTGATTAGTATGAATGATTT+TGG - chr5_4:39115116-39115135 Msa0850280:CDS 20.0%
!!! AGTAAGATAACGATATTTTA+AGG + chr5_4:39115407-39115426 None:intergenic 20.0%
!! AAACAAAATACAAAAGAAGA+AGG + chr5_4:39115815-39115834 None:intergenic 20.0%
!! TTTGACATAAACTAAAACTA+AGG + chr5_4:39115961-39115980 None:intergenic 20.0%
!!! AAGAACTATTGATGATTTAT+TGG + chr5_4:39116546-39116565 None:intergenic 20.0%
!! AAACAAGTATCCATATTAAA+AGG - chr5_4:39116593-39116612 Msa0850280:intron 20.0%
!!! TGATTATGTTATTTTGGTTA+TGG - chr5_4:39116721-39116740 Msa0850280:intron 20.0%
!!! GATTATGTTATTTTGGTTAT+GGG - chr5_4:39116722-39116741 Msa0850280:intron 20.0%
!! TATGTATGTTTATTTGTTCA+TGG + chr5_4:39117023-39117042 None:intergenic 20.0%
!! ACAAATAAACATACATAATG+TGG - chr5_4:39117026-39117045 Msa0850280:intron 20.0%
!! TACATAATGTGGTAAAAAAA+TGG - chr5_4:39117037-39117056 Msa0850280:intron 20.0%
!! TGAAGTTTATACATGTTTAA+AGG + chr5_4:39117262-39117281 None:intergenic 20.0%
!! AAATGAGAGAATATTTAGTT+AGG - chr5_4:39117307-39117326 Msa0850280:intron 20.0%
!!! TTATTTTATATTGGGAAACA+AGG - chr5_4:39117351-39117370 Msa0850280:intron 20.0%
!!! TATTTTATATTGGGAAACAA+GGG - chr5_4:39117352-39117371 Msa0850280:intron 20.0%
!!! ATAATCAATGTTTTCAATTG+TGG + chr5_4:39117695-39117714 None:intergenic 20.0%
!! ATACTAGAAAAAGTTATTTG+GGG + chr5_4:39117764-39117783 None:intergenic 20.0%
!!! GTATTTTGATGAAATCTTTT+GGG + chr5_4:39117876-39117895 None:intergenic 20.0%
!! ATCAAGTAAAGAATAACTAA+TGG - chr5_4:39118472-39118491 Msa0850280:CDS 20.0%
!! ATGCATATTAATTTACTCAT+TGG + chr5_4:39118651-39118670 None:intergenic 20.0%
! AAAAATGAAAGTAATGGTGA+TGG + chr5_4:39112954-39112973 None:intergenic 25.0%
! GAAGAGAAAAATGAAAGTAA+TGG + chr5_4:39112960-39112979 None:intergenic 25.0%
! CAAATCATTTAACCCATATT+TGG - chr5_4:39113551-39113570 Msa0850280:CDS 25.0%
! TTTCAAATGAATTCTACTAC+TGG - chr5_4:39113729-39113748 Msa0850280:intron 25.0%
! TTCAAATGAATTCTACTACT+GGG - chr5_4:39113730-39113749 Msa0850280:intron 25.0%
! TTACAATACAAACAAAACTC+GGG + chr5_4:39113808-39113827 None:intergenic 25.0%
! ATTATGTGTTGTATGAATGA+AGG - chr5_4:39113847-39113866 Msa0850280:intron 25.0%
! CACCAAACATAAACATATTT+AGG - chr5_4:39113933-39113952 Msa0850280:intron 25.0%
! TCCCTAAATATGTTTATGTT+TGG + chr5_4:39113938-39113957 None:intergenic 25.0%
!! TATGATTTGGAAAATTGGAA+GGG - chr5_4:39114121-39114140 Msa0850280:intron 25.0%
! AGAGAAAAGAAAACTTACTT+TGG + chr5_4:39114170-39114189 None:intergenic 25.0%
!! AGTAAGTTTTCTTTTCTCTA+TGG - chr5_4:39114171-39114190 Msa0850280:intron 25.0%
! AAACTAAAAGACAAATTCGA+GGG + chr5_4:39114280-39114299 None:intergenic 25.0%
! AAAACTAAAAGACAAATTCG+AGG + chr5_4:39114281-39114300 None:intergenic 25.0%
! AGCATAACAGTATATAGAAA+AGG + chr5_4:39114429-39114448 None:intergenic 25.0%
!! CTGAATTATTAGAATGGATT+TGG + chr5_4:39114506-39114525 None:intergenic 25.0%
! CAAATCCATTCTAATAATTC+AGG - chr5_4:39114504-39114523 Msa0850280:intron 25.0%
! AGTAACCTGAATTATTAGAA+TGG + chr5_4:39114512-39114531 None:intergenic 25.0%
! AGGAAAAAATGGAATTTCAA+TGG - chr5_4:39114673-39114692 Msa0850280:CDS 25.0%
! GGAAAAAATGGAATTTCAAT+GGG - chr5_4:39114674-39114693 Msa0850280:CDS 25.0%
! GTTTAATAGAAGATATTGGT+GGG + chr5_4:39114925-39114944 None:intergenic 25.0%
! TGTTTAATAGAAGATATTGG+TGG + chr5_4:39114926-39114945 None:intergenic 25.0%
! TGGAAAACATTGTTTCATAA+AGG + chr5_4:39114955-39114974 None:intergenic 25.0%
!! AATGTTTTCCACTCTATTAA+AGG - chr5_4:39114964-39114983 Msa0850280:CDS 25.0%
! TCGTTATCTTACTTTATCAA+TGG - chr5_4:39115414-39115433 Msa0850280:intron 25.0%
! TTTGCTTATATTAAGTCACA+TGG - chr5_4:39115486-39115505 Msa0850280:intron 25.0%
! TTATATTAAGTCACATGGTT+TGG - chr5_4:39115491-39115510 Msa0850280:intron 25.0%
! CAAAGATGTAACATAATTAG+AGG - chr5_4:39115692-39115711 Msa0850280:intron 25.0%
! AAGTGTGATTATAAAGCTTA+AGG + chr5_4:39115932-39115951 None:intergenic 25.0%
! CTAAACATAGACTAATTCTA+AGG + chr5_4:39116038-39116057 None:intergenic 25.0%
!! CTTAGAATTAGTCTATGTTT+AGG - chr5_4:39116036-39116055 Msa0850280:intron 25.0%
!! TATAACTTGTACCGAAATAA+CGG + chr5_4:39116079-39116098 None:intergenic 25.0%
!! CTTGTGTATGTTTGAAATTA+TGG + chr5_4:39116154-39116173 None:intergenic 25.0%
!!! ATTATAATTTTGATGAACCG+TGG - chr5_4:39116178-39116197 Msa0850280:intron 25.0%
! AATGGTAAATAGATTGTGTA+GGG + chr5_4:39116327-39116346 None:intergenic 25.0%
! TAATGGTAAATAGATTGTGT+AGG + chr5_4:39116328-39116347 None:intergenic 25.0%
! TTTACCATTAGAATAAGACT+AGG - chr5_4:39116338-39116357 Msa0850280:CDS 25.0%
!! TTGATGATTTATTGGCATTA+GGG + chr5_4:39116538-39116557 None:intergenic 25.0%
!! ATTGATGATTTATTGGCATT+AGG + chr5_4:39116539-39116558 None:intergenic 25.0%
!! GTTCTTTTAGCAAACTATTT+TGG - chr5_4:39116560-39116579 Msa0850280:intron 25.0%
! AATATGGATACTTGTTTACA+AGG + chr5_4:39116590-39116609 None:intergenic 25.0%
!! AGTGTAAAAGCCTTTTAATA+TGG + chr5_4:39116606-39116625 None:intergenic 25.0%
! CACAAAATTACCAAAATAAC+AGG + chr5_4:39116851-39116870 None:intergenic 25.0%
!!! GTTATTTTGGTAATTTTGTG+TGG - chr5_4:39116851-39116870 Msa0850280:CDS 25.0%
!! TCCAATTTTGTCATTATTCT+TGG + chr5_4:39116900-39116919 None:intergenic 25.0%
! AAGAATAATGACAAAATTGG+AGG - chr5_4:39116899-39116918 Msa0850280:CDS 25.0%
!! ATGTGGTAAAAAAATGGATT+TGG - chr5_4:39117043-39117062 Msa0850280:intron 25.0%
! TATACATGTTTAAAGGATCT+TGG + chr5_4:39117255-39117274 None:intergenic 25.0%
! TTTAGTTGTGCTTACTAAAT+GGG + chr5_4:39117412-39117431 None:intergenic 25.0%
! ATTTAGTTGTGCTTACTAAA+TGG + chr5_4:39117413-39117432 None:intergenic 25.0%
! TAAATCTCAATTACTAGATG+CGG - chr5_4:39117428-39117447 Msa0850280:CDS 25.0%
!! TTAACTATTTTCTTGGAATC+TGG + chr5_4:39117513-39117532 None:intergenic 25.0%
! AGATTCCAAGAAAATAGTTA+AGG - chr5_4:39117512-39117531 Msa0850280:CDS 25.0%
! TAGAAAATAGTGTTTGTTTG+CGG + chr5_4:39117610-39117629 None:intergenic 25.0%
! ATATCAAATTGCTACATACA+TGG + chr5_4:39117635-39117654 None:intergenic 25.0%
! GGGATATATACAATGTATTT+CGG + chr5_4:39117743-39117762 None:intergenic 25.0%
! TACTAGAAAAAGTTATTTGG+GGG + chr5_4:39117763-39117782 None:intergenic 25.0%
!! AGTTGAGAAATAGTAGTTTT+AGG + chr5_4:39117792-39117811 None:intergenic 25.0%
!! ATATTTTATCATTGCAATGC+AGG - chr5_4:39117826-39117845 Msa0850280:intron 25.0%
!!! GGTATTTTGATGAAATCTTT+TGG + chr5_4:39117877-39117896 None:intergenic 25.0%
! ATATGACTCTACTTATGTAA+TGG - chr5_4:39118517-39118536 Msa0850280:CDS 25.0%
! AAAAGACACTTAATATGAGA+CGG + chr5_4:39118603-39118622 None:intergenic 25.0%
!! CTCATATTAAGTGTCTTTTA+AGG - chr5_4:39118604-39118623 Msa0850280:CDS 25.0%
!! AAGTAATGGTGATGGAAAAT+TGG + chr5_4:39112946-39112965 None:intergenic 30.0%
TTTCCCTCAAATCATTCTTA+CGG - chr5_4:39113288-39113307 Msa0850280:CDS 30.0%
CATGTTTGACAAAATGTTGT+TGG - chr5_4:39113371-39113390 Msa0850280:CDS 30.0%
GTTGAAACACTTCTTGAATT+AGG - chr5_4:39113393-39113412 Msa0850280:CDS 30.0%
TTCTCAAATTATTAGCGTGT+CGG - chr5_4:39113472-39113491 Msa0850280:CDS 30.0%
! TTTTAGTACTTACCCAATCT+CGG - chr5_4:39113625-39113644 Msa0850280:CDS 30.0%
! CTACAATTCTAGTATTGAGT+GGG - chr5_4:39113689-39113708 Msa0850280:intron 30.0%
CCATACTTTGAATTTACCAA+AGG + chr5_4:39114001-39114020 None:intergenic 30.0%
CCTTTGGTAAATTCAAAGTA+TGG - chr5_4:39113998-39114017 Msa0850280:intron 30.0%
! CTTCCAATTTTCCAAATCAT+AGG + chr5_4:39114122-39114141 None:intergenic 30.0%
! CTATGATTTGGAAAATTGGA+AGG - chr5_4:39114120-39114139 Msa0850280:intron 30.0%
GTCTAGTATTCTTAAAATCG+TGG - chr5_4:39114238-39114257 Msa0850280:intron 30.0%
AGTATTCTTAAAATCGTGGT+TGG - chr5_4:39114242-39114261 Msa0850280:intron 30.0%
AAGTCATGATTCAATTTCCA+AGG + chr5_4:39114359-39114378 None:intergenic 30.0%
! TCAGGTTACTTTACAAGATT+TGG - chr5_4:39114522-39114541 Msa0850280:intron 30.0%
TTTCATAGTTGCATAGAACA+AGG - chr5_4:39114565-39114584 Msa0850280:CDS 30.0%
AAAACATATAAAAGGCAACC+CGG - chr5_4:39114859-39114878 Msa0850280:CDS 30.0%
AACTGTTTCACCAACTAAAT+AGG + chr5_4:39114999-39115018 None:intergenic 30.0%
ACGCAATATACCTGATTTAA+CGG + chr5_4:39115142-39115161 None:intergenic 30.0%
TTAAATCAGGTATATTGCGT+CGG - chr5_4:39115142-39115161 Msa0850280:CDS 30.0%
CGATACATATATGAGAAACA+AGG - chr5_4:39115179-39115198 Msa0850280:CDS 30.0%
TCTGATTCTGACATAAACAA+AGG + chr5_4:39115268-39115287 None:intergenic 30.0%
TACTTTATCAATGGTCTCAA+TGG - chr5_4:39115423-39115442 Msa0850280:intron 30.0%
!!! TATCACCAACTTTTTTCCAA+TGG + chr5_4:39115610-39115629 None:intergenic 30.0%
!!! TCACTTAGTTGTTTTAGTTC+TGG - chr5_4:39115769-39115788 Msa0850280:intron 30.0%
TTATAGAACTAGAGACAAAG+AGG + chr5_4:39115984-39116003 None:intergenic 30.0%
ATGTTGTACTACCGTTATTT+CGG - chr5_4:39116065-39116084 Msa0850280:intron 30.0%
! TTGCGTGATCAAAATTTTTC+AGG - chr5_4:39116212-39116231 Msa0850280:intron 30.0%
! TGCGTGATCAAAATTTTTCA+GGG - chr5_4:39116213-39116232 Msa0850280:intron 30.0%
!!! TGATCAAAATTTTTCAGGGA+TGG - chr5_4:39116217-39116236 Msa0850280:intron 30.0%
!! CAAACCTAGTCTTATTCTAA+TGG + chr5_4:39116345-39116364 None:intergenic 30.0%
! ATAAGACTAGGTTTGTTTGA+TGG - chr5_4:39116350-39116369 Msa0850280:CDS 30.0%
! TAAGACTAGGTTTGTTTGAT+GGG - chr5_4:39116351-39116370 Msa0850280:CDS 30.0%
AATCCAACCAAACTTCAATA+TGG - chr5_4:39116374-39116393 Msa0850280:intron 30.0%
AATTCTGCCATATTGAAGTT+TGG + chr5_4:39116384-39116403 None:intergenic 30.0%
AAACTTCAATATGGCAGAAT+TGG - chr5_4:39116383-39116402 Msa0850280:intron 30.0%
!! TCTTTAGAGCATACTTGATT+TGG + chr5_4:39116410-39116429 None:intergenic 30.0%
!!! TGTTATTTTGGTTATGGGAT+TGG - chr5_4:39116727-39116746 Msa0850280:intron 30.0%
!! TTCTAAGAAGCCTGTTATTT+TGG - chr5_4:39116838-39116857 Msa0850280:CDS 30.0%
!! ATTTTGGTAATTTTGTGTGG+TGG - chr5_4:39116854-39116873 Msa0850280:CDS 30.0%
TTGGCAAAAGTAATATCAAC+AGG + chr5_4:39116881-39116900 None:intergenic 30.0%
GCCAAGAATAATGACAAAAT+TGG - chr5_4:39116896-39116915 Msa0850280:CDS 30.0%
ATTTGGTTGAATTGACTAGA+TGG - chr5_4:39117476-39117495 Msa0850280:CDS 30.0%
AGGAATAATTTGAGTAGCTT+AGG + chr5_4:39117999-39118018 None:intergenic 30.0%
!! ACTCTGAAACAAGTTTGTAA+CGG + chr5_4:39118104-39118123 None:intergenic 30.0%
! TACAAACTTGTTTCAGAGTT+AGG - chr5_4:39118105-39118124 Msa0850280:intron 30.0%
ATGTCCATTTCTGTAACATT+GGG - chr5_4:39118147-39118166 Msa0850280:intron 30.0%
AATTCCCAATGTTACAGAAA+TGG + chr5_4:39118154-39118173 None:intergenic 30.0%
ACATTGGGAATTACAAATAC+TGG - chr5_4:39118162-39118181 Msa0850280:intron 30.0%
AATTACAAATACTGGAAGCA+TGG - chr5_4:39118170-39118189 Msa0850280:intron 30.0%
TTTCCATTTCTACCTTTCTT+TGG + chr5_4:39118228-39118247 None:intergenic 30.0%
! TATGTAATGGAAAGCTTGAT+TGG - chr5_4:39118530-39118549 Msa0850280:CDS 30.0%
TAAGGTTGAGATTGCAAAAG+GGG + chr5_4:39113075-39113094 None:intergenic 35.0%
GTAAGGTTGAGATTGCAAAA+GGG + chr5_4:39113076-39113095 None:intergenic 35.0%
! TCATTCCACCATTGATAACT+CGG + chr5_4:39113199-39113218 None:intergenic 35.0%
! GGTGTTTCTTATGTTGGTAA+GGG - chr5_4:39113229-39113248 Msa0850280:CDS 35.0%
! GTGTTTCTTATGTTGGTAAG+GGG - chr5_4:39113230-39113249 Msa0850280:CDS 35.0%
! CTTCTTTTGATCCCAAACTT+TGG - chr5_4:39113314-39113333 Msa0850280:CDS 35.0%
! AGTTACTGACCTTACTGATT+CGG + chr5_4:39113342-39113361 None:intergenic 35.0%
TTCAGTGTAATTATAGGCGT+CGG + chr5_4:39113442-39113461 None:intergenic 35.0%
TCTCAAATTATTAGCGTGTC+GGG - chr5_4:39113473-39113492 Msa0850280:CDS 35.0%
AATGAAACGAAGCACAGATA+CGG + chr5_4:39113531-39113550 None:intergenic 35.0%
TTTAGTACTTACCCAATCTC+GGG - chr5_4:39113626-39113645 Msa0850280:CDS 35.0%
CCACTCAATACTAGAATTGT+AGG + chr5_4:39113691-39113710 None:intergenic 35.0%
! CCTACAATTCTAGTATTGAG+TGG - chr5_4:39113688-39113707 Msa0850280:intron 35.0%
AAATGAATTCTACTACTGGG+CGG - chr5_4:39113733-39113752 Msa0850280:intron 35.0%
!! GATTAGTCTCCTGAAGTATT+CGG - chr5_4:39113759-39113778 Msa0850280:intron 35.0%
GTTGTATGAATGAAGGTGAT+TGG - chr5_4:39113854-39113873 Msa0850280:intron 35.0%
ACATATTTAGGGATCCTAGA+TGG - chr5_4:39113945-39113964 Msa0850280:intron 35.0%
CATATTTAGGGATCCTAGAT+GGG - chr5_4:39113946-39113965 Msa0850280:intron 35.0%
ATATTTAGGGATCCTAGATG+GGG - chr5_4:39113947-39113966 Msa0850280:intron 35.0%
! AATTAGTTTCCCACCTTCAA+AGG + chr5_4:39114056-39114075 None:intergenic 35.0%
TTTGAAGGTGGGAAACTAAT+TGG - chr5_4:39114055-39114074 Msa0850280:intron 35.0%
ACACTTTACTGCCTATGATT+TGG - chr5_4:39114108-39114127 Msa0850280:intron 35.0%
! CTGCCTATGATTTGGAAAAT+TGG - chr5_4:39114116-39114135 Msa0850280:intron 35.0%
TTTCTCTATGGTTTAGTCCT+AGG - chr5_4:39114183-39114202 Msa0850280:intron 35.0%
TTCTCTATGGTTTAGTCCTA+GGG - chr5_4:39114184-39114203 Msa0850280:intron 35.0%
TCCTAGGGTGATTAATTCTA+TGG - chr5_4:39114199-39114218 Msa0850280:intron 35.0%
ACCATAGAATTAATCACCCT+AGG + chr5_4:39114203-39114222 None:intergenic 35.0%
TTATGTCGTTGTTGAATCCT+TGG - chr5_4:39114339-39114358 Msa0850280:intron 35.0%
! GGTTACTTTACAAGATTTGG+CGG - chr5_4:39114525-39114544 Msa0850280:intron 35.0%
TCTATGCAACTATGAAACGA+GGG + chr5_4:39114562-39114581 None:intergenic 35.0%
TTCTATGCAACTATGAAACG+AGG + chr5_4:39114563-39114582 None:intergenic 35.0%
! AGTTTGGAACTCCATTAACA+CGG + chr5_4:39114621-39114640 None:intergenic 35.0%
AGATTGTAATCTGCACAGTT+TGG + chr5_4:39114637-39114656 None:intergenic 35.0%
! ATCTTTTAACCAATACGGCA+AGG - chr5_4:39114653-39114672 Msa0850280:CDS 35.0%
!! ATGATTTTGGCCGTTAAATC+AGG - chr5_4:39115129-39115148 Msa0850280:CDS 35.0%
TTATCAATGGTCTCAATGGA+AGG - chr5_4:39115427-39115446 Msa0850280:intron 35.0%
! ATGGCTTGCCTCATATATAT+GGG + chr5_4:39115542-39115561 None:intergenic 35.0%
! AATGGCTTGCCTCATATATA+TGG + chr5_4:39115543-39115562 None:intergenic 35.0%
! TTTTCCAATGGAGACTATGA+TGG + chr5_4:39115598-39115617 None:intergenic 35.0%
AGTCTCCATTGGAAAAAAGT+TGG - chr5_4:39115602-39115621 Msa0850280:intron 35.0%
TAAATAGATTGTGTAGGGCA+CGG + chr5_4:39116322-39116341 None:intergenic 35.0%
GTAAATACCCTTGGAGTTAT+AGG - chr5_4:39116512-39116531 Msa0850280:intron 35.0%
ATGGATACTTGTTTACAAGG+AGG + chr5_4:39116587-39116606 None:intergenic 35.0%
! TTTTAGCAACTTCAACTGCT+CGG + chr5_4:39116697-39116716 None:intergenic 35.0%
! AGAGTTCATTTAGAGTTACC+TGG - chr5_4:39116779-39116798 Msa0850280:intron 35.0%
! ATAAGTTTCTGTTGCTTACC+AGG + chr5_4:39116800-39116819 None:intergenic 35.0%
!! ACAAAATTGGAGGCATCATT+TGG - chr5_4:39116909-39116928 Msa0850280:CDS 35.0%
!! CAAAATTGGAGGCATCATTT+GGG - chr5_4:39116910-39116929 Msa0850280:CDS 35.0%
AGACAGAAGAAAACTAACCA+GGG + chr5_4:39116997-39117016 None:intergenic 35.0%
AAGACAGAAGAAAACTAACC+AGG + chr5_4:39116998-39117017 None:intergenic 35.0%
ACCATTCAATCAAGATTGAG+CGG + chr5_4:39117184-39117203 None:intergenic 35.0%
!! AAATCTCTATCGTTGGTTCA+AGG + chr5_4:39117460-39117479 None:intergenic 35.0%
TTGAACCAACGATAGAGATT+TGG - chr5_4:39117459-39117478 Msa0850280:CDS 35.0%
TTCAACCAAATCTCTATCGT+TGG + chr5_4:39117467-39117486 None:intergenic 35.0%
! TGCGACCTTAACTATTTTCT+TGG + chr5_4:39117520-39117539 None:intergenic 35.0%
! TTTTATCATTGCAATGCAGG+AGG - chr5_4:39117829-39117848 Msa0850280:intron 35.0%
TTTGACGGAAATGAAGTTGT+AGG + chr5_4:39118019-39118038 None:intergenic 35.0%
!!! GTGAAGGTTGTTGTTTTTGA+CGG + chr5_4:39118034-39118053 None:intergenic 35.0%
CAATGTTACAGAAATGGACA+TGG + chr5_4:39118148-39118167 None:intergenic 35.0%
CATGTCCATTTCTGTAACAT+TGG - chr5_4:39118146-39118165 Msa0850280:intron 35.0%
AAGCCAAAGAAAGGTAGAAA+TGG - chr5_4:39118222-39118241 Msa0850280:CDS 35.0%
TGAAGAAGGTGGTTATTTGT+TGG - chr5_4:39118374-39118393 Msa0850280:CDS 35.0%
TTAATATGAGACGGAGGATA+GGG + chr5_4:39118594-39118613 None:intergenic 35.0%
AGGTACATTAGTCGGTGAAT+CGG + chr5_4:39113011-39113030 None:intergenic 40.0%
! GAGTAAGGAGGTACATTAGT+CGG + chr5_4:39113019-39113038 None:intergenic 40.0%
! GAAGAATTTTGTACGTGGGT+TGG + chr5_4:39113053-39113072 None:intergenic 40.0%
! AGGGGAAGAATTTTGTACGT+GGG + chr5_4:39113057-39113076 None:intergenic 40.0%
! AAGGGGAAGAATTTTGTACG+TGG + chr5_4:39113058-39113077 None:intergenic 40.0%
GGTAAGGTTGAGATTGCAAA+AGG + chr5_4:39113077-39113096 None:intergenic 40.0%
TCGGTATACCGAGTTATCAA+TGG - chr5_4:39113188-39113207 Msa0850280:CDS 40.0%
GTATACCGAGTTATCAATGG+TGG - chr5_4:39113191-39113210 Msa0850280:CDS 40.0%
TTGCACGGTGTTTCTTATGT+TGG - chr5_4:39113223-39113242 Msa0850280:CDS 40.0%
CGGTGTTTCTTATGTTGGTA+AGG - chr5_4:39113228-39113247 Msa0850280:CDS 40.0%
GGTAAGGGGATAAGATTGAA+TGG - chr5_4:39113244-39113263 Msa0850280:CDS 40.0%
CAGCCGTAAGAATGATTTGA+GGG + chr5_4:39113294-39113313 None:intergenic 40.0%
!! CTGATTCGGTACCAAAGTTT+GGG + chr5_4:39113328-39113347 None:intergenic 40.0%
!! ACTGATTCGGTACCAAAGTT+TGG + chr5_4:39113329-39113348 None:intergenic 40.0%
! ACTTTGGTACCGAATCAGTA+AGG - chr5_4:39113330-39113349 Msa0850280:CDS 40.0%
CTCAAATTATTAGCGTGTCG+GGG - chr5_4:39113474-39113493 Msa0850280:CDS 40.0%
TTAGTACTTACCCAATCTCG+GGG - chr5_4:39113627-39113646 Msa0850280:CDS 40.0%
GGTCTCAAACCATATACCAT+CGG + chr5_4:39113657-39113676 None:intergenic 40.0%
! TGGTATATGGTTTGAGACCT+AGG - chr5_4:39113658-39113677 Msa0850280:CDS 40.0%
! GTATTGAGTGGGTTCATACA+TGG - chr5_4:39113700-39113719 Msa0850280:intron 40.0%
AATGAAGGTGATTGGAACTG+AGG - chr5_4:39113862-39113881 Msa0850280:intron 40.0%
TATGGTGTTTCCTATGTGAG+AGG - chr5_4:39114016-39114035 Msa0850280:intron 40.0%
CTTCAAGGTGATTCCTTTGA+AGG - chr5_4:39114040-39114059 Msa0850280:intron 40.0%
! AAGGTGATTCCTTTGAAGGT+GGG - chr5_4:39114044-39114063 Msa0850280:intron 40.0%
ATAGAACAAGGACGATCTAG+TGG - chr5_4:39114577-39114596 Msa0850280:CDS 40.0%
TGTGCTTACAACCGTGTTAA+TGG - chr5_4:39114607-39114626 Msa0850280:CDS 40.0%
!!! CCATTTTTTCCTTGCCGTAT+TGG + chr5_4:39114665-39114684 None:intergenic 40.0%
CCAATACGGCAAGGAAAAAA+TGG - chr5_4:39114662-39114681 Msa0850280:CDS 40.0%
CATGCTCACCTTTAATAGAG+TGG + chr5_4:39114975-39114994 None:intergenic 40.0%
CACTCTATTAAAGGTGAGCA+TGG - chr5_4:39114973-39114992 Msa0850280:CDS 40.0%
AGGTTATGCAAAAACACCAG+AGG - chr5_4:39115199-39115218 Msa0850280:CDS 40.0%
GTGGGGTCTAATGAAAATGT+AGG + chr5_4:39115517-39115536 None:intergenic 40.0%
! TGGCTTGCCTCATATATATG+GGG + chr5_4:39115541-39115560 None:intergenic 40.0%
! CCATCATTGATGGCTTAGAA+TGG + chr5_4:39115561-39115580 None:intergenic 40.0%
CCATTCTAAGCCATCAATGA+TGG - chr5_4:39115558-39115577 Msa0850280:intron 40.0%
TAAGCCATCAATGATGGTCA+TGG - chr5_4:39115564-39115583 Msa0850280:intron 40.0%
!! TGGAGACTATGATGGACATT+GGG + chr5_4:39115590-39115609 None:intergenic 40.0%
!! ATGGAGACTATGATGGACAT+TGG + chr5_4:39115591-39115610 None:intergenic 40.0%
ATGTCCATCATAGTCTCCAT+TGG - chr5_4:39115591-39115610 Msa0850280:intron 40.0%
ACGCAACATGTAAATTGCCA+CGG + chr5_4:39116198-39116217 None:intergenic 40.0%
CTGCCATATTGAAGTTTGGT+TGG + chr5_4:39116380-39116399 None:intergenic 40.0%
GGGTATTTACTCTTGGAAGT+GGG + chr5_4:39116502-39116521 None:intergenic 40.0%
! AGGGTATTTACTCTTGGAAG+TGG + chr5_4:39116503-39116522 None:intergenic 40.0%
CTTCCAAGAGTAAATACCCT+TGG - chr5_4:39116503-39116522 Msa0850280:intron 40.0%
!! ACTCCAAGGGTATTTACTCT+TGG + chr5_4:39116509-39116528 None:intergenic 40.0%
ATTAGGGCCTATAACTCCAA+GGG + chr5_4:39116522-39116541 None:intergenic 40.0%
ATCCAGAACGATAATGTGTC+TGG + chr5_4:39116637-39116656 None:intergenic 40.0%
! TATCGTTCTGGATGTACTGA+TGG - chr5_4:39116644-39116663 Msa0850280:intron 40.0%
ATTGGACCAAAGTCAAGAGA+CGG - chr5_4:39116745-39116764 Msa0850280:intron 40.0%
TCAGGTTACATCTGGAGATT+GGG - chr5_4:39117092-39117111 Msa0850280:intron 40.0%
ACCGCTCAATCTTGATTGAA+TGG - chr5_4:39117180-39117199 Msa0850280:intron 40.0%
AGACTTTGTAGCTGCAATTG+TGG + chr5_4:39117544-39117563 None:intergenic 40.0%
CTCATTCTCATGTCTGTCAT+TGG + chr5_4:39117898-39117917 None:intergenic 40.0%
!!! GTTTTCGAGTATCGAATGAG+TGG + chr5_4:39118070-39118089 None:intergenic 40.0%
CTGTTTGTCAAGCCAAAGAA+AGG - chr5_4:39118213-39118232 Msa0850280:CDS 40.0%
TGGAAATCCAGTGAAACAGT+TGG - chr5_4:39118242-39118261 Msa0850280:CDS 40.0%
AATCCAGTGAAACAGTTGGT+AGG - chr5_4:39118246-39118265 Msa0850280:CDS 40.0%
! ATCCAGTGAAACAGTTGGTA+GGG - chr5_4:39118247-39118266 Msa0850280:CDS 40.0%
CTTAGTAGAGCAAATGAGAG+TGG - chr5_4:39118339-39118358 Msa0850280:CDS 40.0%
! AGGTGGTTATTTGTTGGTTG+TGG - chr5_4:39118380-39118399 Msa0850280:CDS 40.0%
! GGTGGTTATTTGTTGGTTGT+GGG - chr5_4:39118381-39118400 Msa0850280:CDS 40.0%
! TTATTTGTTGGTTGTGGGAG+AGG - chr5_4:39118386-39118405 Msa0850280:CDS 40.0%
CTTAATATGAGACGGAGGAT+AGG + chr5_4:39118595-39118614 None:intergenic 40.0%
AGACACTTAATATGAGACGG+AGG + chr5_4:39118600-39118619 None:intergenic 40.0%
CATAAATCCCCTCACAGCAT+GGG - chr5_4:39112920-39112939 Msa0850280:three_prime_UTR 45.0%
AAAATTGGCCCATGCTGTGA+GGG + chr5_4:39112931-39112950 None:intergenic 45.0%
TTGGAGATGTCACAGGAGTA+AGG + chr5_4:39113034-39113053 None:intergenic 45.0%
TGGCTCTTTGAGTGATGGTA+AGG + chr5_4:39113093-39113112 None:intergenic 45.0%
!! GTCTTTGGCTCTTTGAGTGA+TGG + chr5_4:39113098-39113117 None:intergenic 45.0%
GAGCCAAAGACATCGTATCA+CGG - chr5_4:39113107-39113126 Msa0850280:CDS 45.0%
TGGTGGAATGAAGCTTTGCA+CGG - chr5_4:39113208-39113227 Msa0850280:CDS 45.0%
GCAGCCGTAAGAATGATTTG+AGG + chr5_4:39113295-39113314 None:intergenic 45.0%
!! GTAATTATAGGCGTCGGTGT+CGG + chr5_4:39113436-39113455 None:intergenic 45.0%
ACAAAACTCGGGTATCTGCT+TGG + chr5_4:39113797-39113816 None:intergenic 45.0%
TACAATGCTGGACAAGCTCA+AGG - chr5_4:39113896-39113915 Msa0850280:intron 45.0%
ACAATGCTGGACAAGCTCAA+GGG - chr5_4:39113897-39113916 Msa0850280:intron 45.0%
! AAGCTCAAGGGATGACGTTT+TGG - chr5_4:39113909-39113928 Msa0850280:intron 45.0%
! AGCTCAAGGGATGACGTTTT+GGG - chr5_4:39113910-39113929 Msa0850280:intron 45.0%
GAAGAGGACAAGAAACAGCT+GGG - chr5_4:39113969-39113988 Msa0850280:intron 45.0%
AAGAGGACAAGAAACAGCTG+GGG - chr5_4:39113970-39113989 Msa0850280:intron 45.0%
TCCTATGTGAGAGGACTTCA+AGG - chr5_4:39114025-39114044 Msa0850280:intron 45.0%
ACCTTGAAGTCCTCTCACAT+AGG + chr5_4:39114029-39114048 None:intergenic 45.0%
! CAAGGTGATTCCTTTGAAGG+TGG - chr5_4:39114043-39114062 Msa0850280:intron 45.0%
GAAGGTGGGAAACTAATTGG+AGG - chr5_4:39114058-39114077 Msa0850280:intron 45.0%
GTGAGCATGGCCTATTTAGT+TGG - chr5_4:39114986-39115005 Msa0850280:CDS 45.0%
ACATCAGCTACAACATCCTC+TGG + chr5_4:39115218-39115237 None:intergenic 45.0%
CCTCATATATATGGGGAGTG+GGG + chr5_4:39115534-39115553 None:intergenic 45.0%
GCCTCATATATATGGGGAGT+GGG + chr5_4:39115535-39115554 None:intergenic 45.0%
TGCCTCATATATATGGGGAG+TGG + chr5_4:39115536-39115555 None:intergenic 45.0%
!! GCACGGTCGATTTGAGATAT+GGG + chr5_4:39116305-39116324 None:intergenic 45.0%
TTCTTGCAGCTTCAAGAGCA+AGG + chr5_4:39116442-39116461 None:intergenic 45.0%
TCTTGGAAGTGGGAGAATTG+AGG + chr5_4:39116492-39116511 None:intergenic 45.0%
CATTAGGGCCTATAACTCCA+AGG + chr5_4:39116523-39116542 None:intergenic 45.0%
AGAACGATAATGTGTCTGGC+TGG + chr5_4:39116633-39116652 None:intergenic 45.0%
AGCCAGACACATTATCGTTC+TGG - chr5_4:39116632-39116651 Msa0850280:intron 45.0%
GTGTTTCCGTCTCTTGACTT+TGG + chr5_4:39116754-39116773 None:intergenic 45.0%
!! ATCATTTGGGCTGGTTATCC+TGG - chr5_4:39116923-39116942 Msa0850280:CDS 45.0%
! GTGTTTGGTGACTATAACCC+TGG - chr5_4:39116977-39116996 Msa0850280:CDS 45.0%
GTCAGGTTACATCTGGAGAT+TGG - chr5_4:39117091-39117110 Msa0850280:intron 45.0%
TGCACGCAGTTATGTAGTTG+TGG - chr5_4:39117219-39117238 Msa0850280:intron 45.0%
TGCTTACTAAATGGGTGCAC+AGG + chr5_4:39117404-39117423 None:intergenic 45.0%
ATGAGAGCTGATCCATCATC+AGG - chr5_4:39117913-39117932 Msa0850280:intron 45.0%
TAGAAACGGTAGGTTCTACC+AGG + chr5_4:39117943-39117962 None:intergenic 45.0%
AGAACCTACCGTTTCTACAC+AGG - chr5_4:39117946-39117965 Msa0850280:intron 45.0%
CCTTTGGACCTGTGTAGAAA+CGG + chr5_4:39117957-39117976 None:intergenic 45.0%
GGTCCAAAGGTCTACGAATT+CGG - chr5_4:39117967-39117986 Msa0850280:intron 45.0%
TAGCCGAATTCGTAGACCTT+TGG + chr5_4:39117973-39117992 None:intergenic 45.0%
AAGGTCTACGAATTCGGCTA+TGG - chr5_4:39117973-39117992 Msa0850280:intron 45.0%
! TGGTTGACTGGTTGATGTGA+AGG + chr5_4:39118050-39118069 None:intergenic 45.0%
GTATCGAATGAGTGGTTGAC+TGG + chr5_4:39118062-39118081 None:intergenic 45.0%
! ACAAATACTGGAAGCATGGC+TGG - chr5_4:39118174-39118193 Msa0850280:intron 45.0%
! CAAATACTGGAAGCATGGCT+GGG - chr5_4:39118175-39118194 Msa0850280:intron 45.0%
AACCCTACCAACTGTTTCAC+TGG + chr5_4:39118252-39118271 None:intergenic 45.0%
! AGCAAATGAGAGTGGTGTCA+AGG - chr5_4:39118347-39118366 Msa0850280:CDS 45.0%
! AAATGAGAGTGGTGTCAAGG+TGG - chr5_4:39118350-39118369 Msa0850280:CDS 45.0%
!! TATATTTAAAAACATATAAA+AGG - chr5_4:39114851-39114870 Msa0850280:CDS 5.0%
!!! TTTTATTGTTTATTTTATAT+TGG - chr5_4:39117342-39117361 Msa0850280:intron 5.0%
!!! TTTATTGTTTATTTTATATT+GGG - chr5_4:39117343-39117362 Msa0850280:intron 5.0%
GCATAAATCCCCTCACAGCA+TGG - chr5_4:39112919-39112938 Msa0850280:three_prime_UTR 50.0%
AAATTGGCCCATGCTGTGAG+GGG + chr5_4:39112930-39112949 None:intergenic 50.0%
GAAAATTGGCCCATGCTGTG+AGG + chr5_4:39112932-39112951 None:intergenic 50.0%
GTGAATCGGCATGAACGAGT+TGG + chr5_4:39112997-39113016 None:intergenic 50.0%
GAGATGTCACAGGAGTAAGG+AGG + chr5_4:39113031-39113050 None:intergenic 50.0%
GAGCCGTGATACGATGTCTT+TGG + chr5_4:39113113-39113132 None:intergenic 50.0%
CATCGTATCACGGCTCACAT+TGG - chr5_4:39113117-39113136 Msa0850280:CDS 50.0%
ATACCGAGTCGAAGAATGGC+AGG + chr5_4:39113175-39113194 None:intergenic 50.0%
CGGTATACCGAGTCGAAGAA+TGG + chr5_4:39113179-39113198 None:intergenic 50.0%
GTCAGTGTCCTTGTCGTGTT+CGG - chr5_4:39113496-39113515 Msa0850280:CDS 50.0%
CATAGACACCGAACACGACA+AGG + chr5_4:39113507-39113526 None:intergenic 50.0%
CATCGGAAAACCCCGAGATT+GGG + chr5_4:39113640-39113659 None:intergenic 50.0%
! CGGGGTTTTCCGATGGTATA+TGG - chr5_4:39113645-39113664 Msa0850280:CDS 50.0%
! TGGTTTGAGACCTAGGAGTG+TGG - chr5_4:39113665-39113684 Msa0850280:CDS 50.0%
GAATTGTAGGCCACACTCCT+AGG + chr5_4:39113678-39113697 None:intergenic 50.0%
CTGACGTGACCGAATACTTC+AGG + chr5_4:39113771-39113790 None:intergenic 50.0%
GTGATTGGAACTGAGGCTAG+AGG - chr5_4:39113869-39113888 Msa0850280:intron 50.0%
! GCTAGAGGAGTGTACAATGC+TGG - chr5_4:39113884-39113903 Msa0850280:intron 50.0%
TCTTGTCCTCTTCCCCATCT+AGG + chr5_4:39113962-39113981 None:intergenic 50.0%
GGAAGAGGACAAGAAACAGC+TGG - chr5_4:39113968-39113987 Msa0850280:intron 50.0%
AACAGCTGGGGAAGATCCTT+TGG - chr5_4:39113982-39114001 Msa0850280:intron 50.0%
GTAGCTGATGTACTTCGAGC+TGG - chr5_4:39115227-39115246 Msa0850280:CDS 50.0%
CCCCACTCCCCATATATATG+AGG - chr5_4:39115531-39115550 Msa0850280:intron 50.0%
TGGGCCATGACCATCATTGA+TGG + chr5_4:39115571-39115590 None:intergenic 50.0%
TCAGGGATGGATGTAGAGTG+TGG - chr5_4:39116230-39116249 Msa0850280:intron 50.0%
!! GGCACGGTCGATTTGAGATA+TGG + chr5_4:39116306-39116325 None:intergenic 50.0%
CAGCTTCAAGAGCAAGGTCT+AGG + chr5_4:39116436-39116455 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGAAG+TGG - chr5_4:39116443-39116462 Msa0850280:intron 50.0%
!! ATTGGAGGCATCATTTGGGC+TGG - chr5_4:39116914-39116933 Msa0850280:CDS 50.0%
GCTGGTTATCCTGGTGAAAC+TGG - chr5_4:39116932-39116951 Msa0850280:CDS 50.0%
GGTTATCCTGGTGAAACTGG+TGG - chr5_4:39116935-39116954 Msa0850280:CDS 50.0%
ATCCTGGTGAAACTGGTGGA+AGG - chr5_4:39116939-39116958 Msa0850280:CDS 50.0%
TCCTGGTGAAACTGGTGGAA+GGG - chr5_4:39116940-39116959 Msa0850280:CDS 50.0%
! TAGTGTTACTGCACGCAGTC+AGG - chr5_4:39117074-39117093 Msa0850280:intron 50.0%
GGTTACATCTGGAGATTGGG+CGG - chr5_4:39117095-39117114 Msa0850280:intron 50.0%
GATCCATCATCAGGCTATCC+TGG - chr5_4:39117922-39117941 Msa0850280:intron 50.0%
CTACCAGGATAGCCTGATGA+TGG + chr5_4:39117928-39117947 None:intergenic 50.0%
TGGACCTGTGTAGAAACGGT+AGG + chr5_4:39117953-39117972 None:intergenic 50.0%
CCGTTTCTACACAGGTCCAA+AGG - chr5_4:39117954-39117973 Msa0850280:intron 50.0%
GGCTTGACAAACAGCAACAC+AGG + chr5_4:39118207-39118226 None:intergenic 50.0%
! GGTAGGGTTTGAGAGTGTGA+CGG - chr5_4:39118263-39118282 Msa0850280:CDS 50.0%
! TTTGAGAGTGTGACGGTGGA+AGG - chr5_4:39118270-39118289 Msa0850280:CDS 50.0%
GAGGTGGAAAGGGTGAAGTT+GGG - chr5_4:39118292-39118311 Msa0850280:CDS 50.0%
GGTGTCAAGGTGGTTGAAGA+AGG - chr5_4:39118360-39118379 Msa0850280:CDS 50.0%
GTCAAGGTGGTTGAAGAAGG+TGG - chr5_4:39118363-39118382 Msa0850280:CDS 50.0%
!! ACGTGGGTTGGAGATGTCAC+AGG + chr5_4:39113041-39113060 None:intergenic 55.0%
GCTCCTGCCATTCTTCGACT+CGG - chr5_4:39113169-39113188 Msa0850280:CDS 55.0%
CCATCGGAAAACCCCGAGAT+TGG + chr5_4:39113641-39113660 None:intergenic 55.0%
! CCAATCTCGGGGTTTTCCGA+TGG - chr5_4:39113638-39113657 Msa0850280:CDS 55.0%
AGGGATCCTAGATGGGGAAG+AGG - chr5_4:39113953-39113972 Msa0850280:intron 55.0%
ATATTGGTGGGACCCCTTCC+CGG + chr5_4:39114913-39114932 None:intergenic 55.0%
TGAAACTGGTGGAAGGGCTC+TGG - chr5_4:39116946-39116965 Msa0850280:CDS 55.0%
! GCTCTGGCTCAGGTTGTGTT+TGG - chr5_4:39116962-39116981 Msa0850280:CDS 55.0%
GCACGCAGTCAGGTTACATC+TGG - chr5_4:39117084-39117103 Msa0850280:intron 55.0%
! AGGGTTTGAGAGTGTGACGG+TGG - chr5_4:39118266-39118285 Msa0850280:CDS 55.0%
ACGGTGGAAGGAGGTGGAAA+GGG - chr5_4:39118282-39118301 Msa0850280:CDS 55.0%
GGAGGTGGAAAGGGTGAAGT+TGG - chr5_4:39118291-39118310 Msa0850280:CDS 55.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr5_4:39114881-39114900 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr5_4:39114885-39114904 Msa0850280:CDS 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr5_4:39114886-39114905 Msa0850280:CDS 60.0%
GCCCTTCCACCAGTTTCACC+AGG + chr5_4:39116944-39116963 None:intergenic 60.0%
! GAGAGTGTGACGGTGGAAGG+AGG - chr5_4:39118273-39118292 Msa0850280:CDS 60.0%
AGTGTGACGGTGGAAGGAGG+TGG - chr5_4:39118276-39118295 Msa0850280:CDS 60.0%
GACGGTGGAAGGAGGTGGAA+AGG - chr5_4:39118281-39118300 Msa0850280:CDS 60.0%
!! GTCGGTGTCGGACACGACAC+AGG + chr5_4:39113424-39113443 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr5_4:39114880-39114899 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr5_4:39114897-39114916 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr5_4:39114898-39114917 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr5_4:39114897-39114916 Msa0850280:CDS 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr5_4:39114898-39114917 Msa0850280:CDS 65.0%
! TGGTGGAAGGGCTCTGGCTC+AGG - chr5_4:39116952-39116971 Msa0850280:CDS 65.0%
GCTCCCGCATACGCAGGGTC+CGG - chr5_4:39114891-39114910 Msa0850280:CDS 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr5_4:39114892-39114911 Msa0850280:CDS 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr5_4:39114896-39114915 Msa0850280:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 39112860 39118673 39112860 ID=Msa0850280;Name=Msa0850280
chr5_4 mRNA 39112860 39118673 39112860 ID=Msa0850280-mRNA-1;Parent=Msa0850280;Name=Msa0850280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=33|1|1|1|1|1|6|236|794
chr5_4 exon 39112860 39113685 39112860 ID=Msa0850280-mRNA-1:exon:12520;Parent=Msa0850280-mRNA-1
chr5_4 exon 39114535 39115299 39114535 ID=Msa0850280-mRNA-1:exon:12519;Parent=Msa0850280-mRNA-1
chr5_4 exon 39116285 39116382 39116285 ID=Msa0850280-mRNA-1:exon:12518;Parent=Msa0850280-mRNA-1
chr5_4 exon 39116838 39117007 39116838 ID=Msa0850280-mRNA-1:exon:12517;Parent=Msa0850280-mRNA-1
chr5_4 exon 39117362 39117664 39117362 ID=Msa0850280-mRNA-1:exon:12516;Parent=Msa0850280-mRNA-1
chr5_4 exon 39118182 39118673 39118182 ID=Msa0850280-mRNA-1:exon:12515;Parent=Msa0850280-mRNA-1
chr5_4 five_prime_UTR 39118641 39118673 39118641 ID=Msa0850280-mRNA-1:five_prime_utr;Parent=Msa0850280-mRNA-1
chr5_4 CDS 39118182 39118640 39118182 ID=Msa0850280-mRNA-1:cds;Parent=Msa0850280-mRNA-1
chr5_4 CDS 39117362 39117664 39117362 ID=Msa0850280-mRNA-1:cds;Parent=Msa0850280-mRNA-1
chr5_4 CDS 39116838 39117007 39116838 ID=Msa0850280-mRNA-1:cds;Parent=Msa0850280-mRNA-1
chr5_4 CDS 39116285 39116382 39116285 ID=Msa0850280-mRNA-1:cds;Parent=Msa0850280-mRNA-1
chr5_4 CDS 39114535 39115299 39114535 ID=Msa0850280-mRNA-1:cds;Parent=Msa0850280-mRNA-1
chr5_4 CDS 39113096 39113685 39113096 ID=Msa0850280-mRNA-1:cds;Parent=Msa0850280-mRNA-1
chr5_4 three_prime_UTR 39112860 39113095 39112860 ID=Msa0850280-mRNA-1:three_prime_utr;Parent=Msa0850280-mRNA-1
Gene Sequence

>Msa0850280

ATGCTCTGTAATTTGTTCAGCACGTTGCATAAATCCCCTCACAGCATGGGCCAATTTTCCATCACCATTACTTTCATTTTTCTCTTCTTAACTCGCTACAACCAACTCGTTCATGCCGATTCACCGACTAATGTACCTCCTTACTCCTGTGACATCTCCAACCCACGTACAAAATTCTTCCCCTTTTGCAATCTCAACCTTACCATCACTCAAAGAGCCAAAGACATCGTATCACGGCTCACATTGGATGAGAAAATCTCTCAACTCGTTAACACAGCTCCTGCCATTCTTCGACTCGGTATACCGAGTTATCAATGGTGGAATGAAGCTTTGCACGGTGTTTCTTATGTTGGTAAGGGGATAAGATTGAATGGTAGTGTTACAGCTGCAACTAGTTTCCCTCAAATCATTCTTACGGCTGCTTCTTTTGATCCCAAACTTTGGTACCGAATCAGTAAGGTGATTGGAACTGAGGCTAGAGGAGTGTACAATGCTGGACAAGCTCAAGGGATGACGTTTTGGGCACCAAACATAAACATATTTAGGGATCCTAGATGGGGAAGAGGACAAGAAACAGCTGGGGAAGATCCTTTGGTAAATTCAAAGTATGGTGTTTCCTATGTGAGAGGACTTCAAGGTGATTCCTTTGAAGGTGGGAAACTAATTGGAGGTCGTCTTAAAGCTTCTGCTTGTTGCAAACACTTTACTGCCTATGATTTGGAAAATTGGAAGGGTGTGAATCGTTATGTTTTTGATGCCAAAGTTACTTTACAAGATTTGGCGGATACGTATCAACCCTCGTTTCATAGTTGCATAGAACAAGGACGATCTAGTGGAATAATGTGTGCTTACAACCGTGTTAATGGAGTTCCAAACTGTGCAGATTACAATCTTTTAACCAATACGGCAAGGAAAAAATGGAATTTCAATGGGTATATTGCGTCGGATTGTGACGCAGTTCGATACATATATGAGAAACAAGGTTATGCAAAAACACCAGAGGATGTTGTAGCTGATGTACTTCGAGCTGGGATGGATGTAGAGTGTGGTGATTACATGACAAAGCATGCAAAGTCAGCAGTATTACAAAAAAAAATTCCCATATCTCAAATCGACCGTGCCCTACACAATCTATTTACCATTAGAATAAGACTAGGTTTGTTTGATGGGAATCCAACCAAACTTCAATATGGCAGAATTGGTCCAAATCAAGTATGCTCTAAAGAAAACCTAGACCTTGCTCTTGAAGCTGCAAGAAGTGGCATTGTACTTTTAAAAAACACTGCCTCAATTCTCCCACTTCCAAGAGTAAATACCCTTGGAGTTATAGGCCCTAATGCCAATAAATCATCAATAGTTCTTTTAGCAAACTATTTTGGTCCTCCTTGTAAACAAGTATCCATATTAAAAGGCTTTTACACTTATGCCAGCCAGACACATTATCGTTCTGGATGTACTGATGGAGTAAAGTGTGCTTCAGCTGAAATTGACCGAGCAGTTGAAGTTGCTAAAATAAGTGATTATGTTATTTTGGTTATGGGATTGGACCAAAGTCAAGAGACGGAAACACTTGATAGAGTTCATTTAGAGTTACCTGGTAAGCAACAGAAACTTATTAACAGTGTTGCTAAAGCTTCTAAGAAGCCTGTTATTTTGGTAATTTTGTGTGGTGGTCCTGTTGATATTACTTTTGCCAAGAATAATGACAAAATTGGAGGCATCATTTGGGCTGGTTATCCTGGTGAAACTGGTGGAAGGGCTCTGGCTCAGGTTGTGTTTGGTGACTATAACCCTGGAGGTAGACTACCAATGACATGGTACCCAAAAGATTTCATCAAAATACCAATGACAGACATGAGAATGAGAGCTGATCCATCATCAGGCTATCCTGGTAGAACCTACCGTTTCTACACAGGTCCAAAGGTCTACGAATTCGGCTATGGCCTAAGCTACTCAAATTATTCCTACAACTTCATTTCCGTCAAAAACAACAACCTTCACATCAACCAGTCAACCACTCATTCGATACTCGAAAACTCTGAAACAATCCGTTACAAACTTGTTTCAGAGTTAGGCAAAAAAGCATGTAAAACCATGTCCATTTCTGTAACATTGGGAATTACAAATACTGGAAGCATGGCTGGGAAACATCCTGTGTTGCTGTTTGTCAAGCCAAAGAAAGGTAGAAATGGAAATCCAGTGAAACAGTTGGTAGGGTTTGAGAGTGTGACGGTGGAAGGAGGTGGAAAGGGTGAAGTTGGGTTCGAAGTTAGTGTTTGTGAGCATCTTAGTAGAGCAAATGAGAGTGGTGTCAAGGTGGTTGAAGAAGGTGGTTATTTGTTGGTTGTGGGAGAGGAAGAGTACTCAATAAGTATCACTCTTTGA
Protein sequence

>Msa0850280

MLCNLFSTLHKSPHSMGQFSITITFIFLFLTRYNQLVHADSPTNVPPYSCDISNPRTKFFPFCNLNLTITQRAKDIVSRLTLDEKISQLVNTAPAILRLGIPSYQWWNEALHGVSYVGKGIRLNGSVTAATSFPQIILTAASFDPKLWYRISKVIGTEARGVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPLVNSKYGVSYVRGLQGDSFEGGKLIGGRLKASACCKHFTAYDLENWKGVNRYVFDAKVTLQDLADTYQPSFHSCIEQGRSSGIMCAYNRVNGVPNCADYNLLTNTARKKWNFNGYIASDCDAVRYIYEKQGYAKTPEDVVADVLRAGMDVECGDYMTKHAKSAVLQKKIPISQIDRALHNLFTIRIRLGLFDGNPTKLQYGRIGPNQVCSKENLDLALEAARSGIVLLKNTASILPLPRVNTLGVIGPNANKSSIVLLANYFGPPCKQVSILKGFYTYASQTHYRSGCTDGVKCASAEIDRAVEVAKISDYVILVMGLDQSQETETLDRVHLELPGKQQKLINSVAKASKKPVILVILCGGPVDITFAKNNDKIGGIIWAGYPGETGGRALAQVVFGDYNPGGRLPMTWYPKDFIKIPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSNYSYNFISVKNNNLHINQSTTHSILENSETIRYKLVSELGKKACKTMSISVTLGITNTGSMAGKHPVLLFVKPKKGRNGNPVKQLVGFESVTVEGGGKGEVGFEVSVCEHLSRANESGVKVVEEGGYLLVVGEEEYSISITL*